D. melanogaster heterochomatin genome data from Drosophila Heterochromatin Genome Project, www.dhgp.org Release hetr32b2, dated 20050110. See http://flybase.net/annot/dmel_het_release3.2b2.txt DATA CONTENTS Feature count ------------------------------------------------------------ CDS 430 chromosome_arm 6 gene 320 mRNA 446 match:HDP 187 match:blastx:aa_SP.hyp.dros 5 match:blastx:aa_SP.real.dros 4962 match:blastx:aa_SPTR.dros 17736 match:blastx:aa_SPTR.insect 4441 match:blastx:aa_SPTR.othinv 2468 match:blastx:aa_SPTR.othvert 2036 match:blastx:aa_SPTR.plant 563 match:blastx:aa_SPTR.primate 673 match:blastx:aa_SPTR.rodent 619 match:blastx:aa_SPTR.worm 2403 match:blastx:aa_SPTR.yeast 975 match:blastx:aa_TR.real.dros 5661 match:blastx:aa_users_i.dros 7 match:genscan 1734 match:groupest:na_DGC.dros 720 match:groupest:na_EST.all_nr.dros 2483 match:groupest:na_EST.complete.dros 2161 match:piecegenie 443 match:piler 107 match:piler_raw 3765 match:repeatmasker 3683 match:sim4:P_U.fa 6949 match:sim4:gad_mrna.r3 4431 match:sim4:na_ARGsregion.dros 19 match:sim4:na_DGC.dros 938 match:sim4:na_DGC_dros 841 match:sim4:na_EST.all_nr.dros 5627 match:sim4:na_EST.complete.dros 11410 match:sim4:na_STS.dros 13983 match:sim4:na_cDNA.dros 131 match:sim4:na_gadfly_dmel_r2 121 match:sim4:na_gb.dmel 1257 match:sim4:na_gb.dros 987 match:sim4:na_pe.dros 877 match:sim4:na_snRNA.dros 38 match:sim4:r3_noncoding.FASTA 16 match:tblastx:P_U.fa 2526 match:tblastx:na_dbEST.insect 3882 match:tblastx:na_unigene.rodent 303 ncRNA 8 pseudogene 1 rRNA 6 repeat_region 5504 source 6 transcription_start_site 3254 transposable_element 63 ------------------------------------------------------------ The 'U' chromosome is the unordered collection of contigs which are not assigned to other units. These are artifically ordered by ID in one collection for presentation purposes. Do not be misled by sequence positions which are not valid outside the contig. Computational features are :genewise, :genscan, :twinscan and match: Data are from Postgres Chado database, release 3.2, Copy at ftp://flybase.net/genomes/Drosophila_melanogaster/dmel_hetr32b2_20050110/pgsql/ BULK FILE SET See ftp://flybase.net/genomes/Drosophila_melanogaster/current_hetchr/ blast/ - NCBI blast database set for selected fasta/ feature sets. dna/ - contains dna raw format files per chromosome-arm fasta/ - dna and protein data per chromosome and feature type; gff/ - GFF v3 standard feature files per chromosome gnomap/ - Gnomap standard feature files per chromosome (drive genome map views) These last two contain chromosome locations of above listed features -------------------------------------------------