# Genome feature summary of from Genome Feature merge (genomic and cytology features) [20040821] # ALL chromosomes BAC 949 CDS 18747 DNA_motif 5 RNA_motif 1 aberration_junction 86 chromosome_arm 7 chromosome_band 5715 cytobreakpoint_inv 4565 cytobreakpoint_other 791 cytobreakpoint_ttp 6243 cytodeleted_segment 11073 cytoduplicated_segment 880 cytogene 5671 cytoins 16363 enhancer 27 five_prime_UTR 15769 gene 13472 insertion_site 457 intron 16153 mRNA 19302 mRNA:genscan 19189 mRNA:piecegenie 13794 match:HDP 2448 match:RNAiHDP 40 match:blastx_masked:aa_SP.hyp.dros 354 match:blastx_masked:aa_SP.real.dros 22163 match:blastx_masked:aa_SPTR.dros 68846 match:blastx_masked:aa_SPTR.insect 7492 match:blastx_masked:aa_SPTR.othinv 12471 match:blastx_masked:aa_SPTR.othvert 11774 match:blastx_masked:aa_SPTR.plant 9609 match:blastx_masked:aa_SPTR.primate 16345 match:blastx_masked:aa_SPTR.rodent 16081 match:blastx_masked:aa_SPTR.worm 12679 match:blastx_masked:aa_SPTR.yeast 5211 match:blastx_masked:aa_TR.real.dros 43823 match:blastx_masked:aa_users_i.dros 4633 match:fgenesh 14837 match:sim4:na_DGC.dros 15270 match:sim4:na_EST.all_nr.dros 267828 match:sim4:na_adh.cDNAs.dros 51 match:sim4:na_cDNA.dros 10319 match:sim4:na_gadfly.dros.RELEASE2 14389 match:sim4:na_gb.dros 14977 match:sim4:na_pe.dros 3201 match:tblastx:na_dbEST.insect 16818 match:tblastx:na_unigene.rodent 11707 mature_peptide 7 ncRNA 70 oligo 197726 orthologous_region 12101 point_mutation 485 polyA_site 107 protein_binding_site 90 pseudogene 40 rRNA 96 region 30 regulatory_region 137 repeat_region 4652 rescue_fragment 136 scaffold 437 sequence_variant 232 snRNA 28 snoRNA 28 source 7 syntenic_region 1230 tRNA 288 tRNA:trnascan 297 three_prime_UTR 16777 transcription_start_site 35737 transposable_element 1572 transposable_element_insertion_site 3257 transposable_element_pred 1572 #================================================== # Chromosome 2L BAC 180 CDS 3340 RNA_motif 1 aberration_junction 22 chromosome_arm 1 chromosome_band 946 cytobreakpoint_inv 957 cytobreakpoint_other 228 cytobreakpoint_ttp 1368 cytodeleted_segment 2041 cytoduplicated_segment 160 cytogene 853 cytoins 3516 enhancer 5 five_prime_UTR 2793 gene 2443 insertion_site 217 intron 2857 mRNA 3430 mRNA:genscan 3672 mRNA:piecegenie 2503 match:HDP 395 match:RNAiHDP 7 match:blastx_masked:aa_SP.hyp.dros 56 match:blastx_masked:aa_SP.real.dros 4028 match:blastx_masked:aa_SPTR.dros 8183 match:blastx_masked:aa_SPTR.insect 1479 match:blastx_masked:aa_SPTR.othinv 2337 match:blastx_masked:aa_SPTR.othvert 2253 match:blastx_masked:aa_SPTR.plant 1690 match:blastx_masked:aa_SPTR.primate 3254 match:blastx_masked:aa_SPTR.rodent 3034 match:blastx_masked:aa_SPTR.worm 2652 match:blastx_masked:aa_SPTR.yeast 1131 match:blastx_masked:aa_TR.real.dros 10953 match:blastx_masked:aa_users_i.dros 761 match:fgenesh 2726 match:sim4:na_DGC.dros 2677 match:sim4:na_EST.all_nr.dros 48930 match:sim4:na_adh.cDNAs.dros 51 match:sim4:na_cDNA.dros 1806 match:sim4:na_gadfly.dros.RELEASE2 2532 match:sim4:na_gb.dros 2346 match:sim4:na_pe.dros 633 match:tblastx:na_dbEST.insect 1606 match:tblastx:na_unigene.rodent 2156 mature_peptide 2 ncRNA 16 oligo 35420 orthologous_region 2149 point_mutation 179 polyA_site 41 protein_binding_site 17 pseudogene 12 region 11 regulatory_region 18 repeat_region 740 rescue_fragment 41 scaffold 83 sequence_variant 84 snRNA 15 snoRNA 4 source 1 syntenic_region 190 tRNA 41 tRNA:trnascan 40 three_prime_UTR 2990 transcription_start_site 6489 transposable_element 305 transposable_element_insertion_site 631 transposable_element_pred 305 #================================================== # Chromosome 2R BAC 161 CDS 3816 DNA_motif 1 aberration_junction 7 chromosome_arm 1 chromosome_band 1259 cytobreakpoint_inv 994 cytobreakpoint_other 175 cytobreakpoint_ttp 1015 cytodeleted_segment 3060 cytoduplicated_segment 61 cytogene 990 cytoins 3608 enhancer 14 five_prime_UTR 3243 gene 2683 insertion_site 128 intron 3319 mRNA 4055 mRNA:genscan 3394 mRNA:piecegenie 2656 match:HDP 433 match:RNAiHDP 6 match:blastx_masked:aa_SP.hyp.dros 54 match:blastx_masked:aa_SP.real.dros 4576 match:blastx_masked:aa_SPTR.dros 15675 match:blastx_masked:aa_SPTR.insect 1601 match:blastx_masked:aa_SPTR.othinv 2565 match:blastx_masked:aa_SPTR.othvert 2565 match:blastx_masked:aa_SPTR.plant 2130 match:blastx_masked:aa_SPTR.primate 4223 match:blastx_masked:aa_SPTR.rodent 3805 match:blastx_masked:aa_SPTR.worm 2716 match:blastx_masked:aa_SPTR.yeast 1048 match:blastx_masked:aa_TR.real.dros 10382 match:blastx_masked:aa_users_i.dros 1741 match:fgenesh 2941 match:sim4:na_DGC.dros 3156 match:sim4:na_EST.all_nr.dros 54867 match:sim4:na_cDNA.dros 2191 match:sim4:na_gadfly.dros.RELEASE2 2831 match:sim4:na_gb.dros 2282 match:sim4:na_pe.dros 819 match:tblastx:na_dbEST.insect 2972 match:tblastx:na_unigene.rodent 2388 mature_peptide 4 ncRNA 17 oligo 38879 orthologous_region 2462 point_mutation 143 polyA_site 31 protein_binding_site 9 pseudogene 12 rRNA 96 region 5 regulatory_region 13 repeat_region 1615 rescue_fragment 30 scaffold 74 sequence_variant 40 snoRNA 18 source 1 syntenic_region 241 tRNA 94 tRNA:trnascan 98 three_prime_UTR 3448 transcription_start_site 5337 transposable_element 313 transposable_element_insertion_site 814 transposable_element_pred 313 #================================================== # Chromosome 3L BAC 186 CDS 3644 DNA_motif 4 aberration_junction 1 chromosome_arm 1 chromosome_band 1018 cytobreakpoint_inv 641 cytobreakpoint_other 125 cytobreakpoint_ttp 807 cytodeleted_segment 1360 cytoduplicated_segment 87 cytogene 984 cytoins 2668 enhancer 1 five_prime_UTR 3025 gene 2640 insertion_site 17 intron 3103 mRNA 3710 mRNA:genscan 3835 mRNA:piecegenie 2747 match:HDP 525 match:RNAiHDP 14 match:blastx_masked:aa_SP.hyp.dros 101 match:blastx_masked:aa_SP.real.dros 3978 match:blastx_masked:aa_SPTR.dros 11508 match:blastx_masked:aa_SPTR.insect 1015 match:blastx_masked:aa_SPTR.othinv 2157 match:blastx_masked:aa_SPTR.othvert 1580 match:blastx_masked:aa_SPTR.plant 1456 match:blastx_masked:aa_SPTR.primate 1405 match:blastx_masked:aa_SPTR.rodent 1735 match:blastx_masked:aa_SPTR.worm 1537 match:blastx_masked:aa_SPTR.yeast 655 match:blastx_masked:aa_TR.real.dros 5628 match:blastx_masked:aa_users_i.dros 472 match:fgenesh 2902 match:sim4:na_DGC.dros 3051 match:sim4:na_EST.all_nr.dros 52772 match:sim4:na_cDNA.dros 1999 match:sim4:na_gadfly.dros.RELEASE2 2791 match:sim4:na_gb.dros 3053 match:sim4:na_pe.dros 559 match:tblastx:na_dbEST.insect 4123 match:tblastx:na_unigene.rodent 147 mature_peptide 1 ncRNA 8 oligo 38533 orthologous_region 2359 point_mutation 17 polyA_site 7 protein_binding_site 1 pseudogene 3 region 9 regulatory_region 6 repeat_region 503 rescue_fragment 5 scaffold 83 sequence_variant 11 snRNA 2 snoRNA 3 source 1 syntenic_region 205 tRNA 50 tRNA:trnascan 50 three_prime_UTR 3251 transcription_start_site 7547 transposable_element 288 transposable_element_insertion_site 576 transposable_element_pred 288 #================================================== # Chromosome 3R BAC 235 CDS 4666 aberration_junction 39 chromosome_arm 1 chromosome_band 1295 cytobreakpoint_inv 975 cytobreakpoint_other 165 cytobreakpoint_ttp 1140 cytodeleted_segment 1989 cytoduplicated_segment 193 cytogene 1406 cytoins 3462 enhancer 4 five_prime_UTR 3989 gene 3385 insertion_site 62 intron 4047 mRNA 4779 mRNA:genscan 4652 mRNA:piecegenie 3374 match:HDP 723 match:RNAiHDP 8 match:blastx_masked:aa_SP.hyp.dros 82 match:blastx_masked:aa_SP.real.dros 5444 match:blastx_masked:aa_SPTR.dros 20841 match:blastx_masked:aa_SPTR.insect 1960 match:blastx_masked:aa_SPTR.othinv 3245 match:blastx_masked:aa_SPTR.othvert 3300 match:blastx_masked:aa_SPTR.plant 2599 match:blastx_masked:aa_SPTR.primate 5159 match:blastx_masked:aa_SPTR.rodent 4765 match:blastx_masked:aa_SPTR.worm 3612 match:blastx_masked:aa_SPTR.yeast 1389 match:blastx_masked:aa_TR.real.dros 14264 match:blastx_masked:aa_users_i.dros 924 match:fgenesh 3713 match:sim4:na_DGC.dros 3864 match:sim4:na_EST.all_nr.dros 66619 match:sim4:na_cDNA.dros 2616 match:sim4:na_gadfly.dros.RELEASE2 3576 match:sim4:na_gb.dros 2950 match:sim4:na_pe.dros 716 match:tblastx:na_dbEST.insect 4621 match:tblastx:na_unigene.rodent 4467 ncRNA 17 oligo 49768 orthologous_region 3126 point_mutation 102 polyA_site 21 protein_binding_site 45 pseudogene 9 region 1 regulatory_region 90 repeat_region 912 rescue_fragment 28 scaffold 118 sequence_variant 66 snRNA 9 snoRNA 1 source 1 syntenic_region 259 tRNA 77 tRNA:trnascan 83 three_prime_UTR 4144 transcription_start_site 8057 transposable_element 288 transposable_element_insertion_site 736 transposable_element_pred 288 #================================================== # Chromosome 4 BAC 14 CDS 186 chromosome_arm 1 chromosome_band 52 cytobreakpoint_inv 1 cytobreakpoint_other 18 cytobreakpoint_ttp 218 cytodeleted_segment 38 cytoduplicated_segment 7 cytogene 44 five_prime_UTR 176 gene 80 intron 178 mRNA 189 mRNA:genscan 227 mRNA:piecegenie 66 match:HDP 10 match:blastx_masked:aa_SP.real.dros 315 match:blastx_masked:aa_SPTR.dros 684 match:blastx_masked:aa_SPTR.insect 157 match:blastx_masked:aa_SPTR.othinv 163 match:blastx_masked:aa_SPTR.othvert 154 match:blastx_masked:aa_SPTR.plant 68 match:blastx_masked:aa_SPTR.primate 126 match:blastx_masked:aa_SPTR.rodent 177 match:blastx_masked:aa_SPTR.worm 139 match:blastx_masked:aa_SPTR.yeast 53 match:blastx_masked:aa_TR.real.dros 483 match:blastx_masked:aa_users_i.dros 9 match:fgenesh 81 match:sim4:na_DGC.dros 251 match:sim4:na_EST.all_nr.dros 2751 match:sim4:na_cDNA.dros 146 match:sim4:na_gadfly.dros.RELEASE2 190 match:sim4:na_gb.dros 523 match:sim4:na_pe.dros 5 match:tblastx:na_dbEST.insect 242 match:tblastx:na_unigene.rodent 166 oligo 1249 orthologous_region 65 pseudogene 3 repeat_region 368 scaffold 5 source 1 syntenic_region 30 three_prime_UTR 178 transcription_start_site 675 transposable_element 102 transposable_element_insertion_site 4 transposable_element_pred 102 #================================================== # Chromosome U chromosome_arm 1 source 1 #================================================== # Chromosome X BAC 173 CDS 3095 aberration_junction 17 chromosome_arm 1 chromosome_band 1145 cytobreakpoint_inv 997 cytobreakpoint_other 80 cytobreakpoint_ttp 1695 cytodeleted_segment 2585 cytoduplicated_segment 372 cytogene 1394 cytoins 3109 enhancer 3 five_prime_UTR 2543 gene 2241 insertion_site 33 intron 2649 mRNA 3139 mRNA:genscan 3409 mRNA:piecegenie 2448 match:HDP 362 match:RNAiHDP 5 match:blastx_masked:aa_SP.hyp.dros 61 match:blastx_masked:aa_SP.real.dros 3822 match:blastx_masked:aa_SPTR.dros 11955 match:blastx_masked:aa_SPTR.insect 1280 match:blastx_masked:aa_SPTR.othinv 2004 match:blastx_masked:aa_SPTR.othvert 1922 match:blastx_masked:aa_SPTR.plant 1666 match:blastx_masked:aa_SPTR.primate 2178 match:blastx_masked:aa_SPTR.rodent 2565 match:blastx_masked:aa_SPTR.worm 2023 match:blastx_masked:aa_SPTR.yeast 935 match:blastx_masked:aa_TR.real.dros 2113 match:blastx_masked:aa_users_i.dros 726 match:fgenesh 2474 match:sim4:na_DGC.dros 2271 match:sim4:na_EST.all_nr.dros 41889 match:sim4:na_cDNA.dros 1561 match:sim4:na_gadfly.dros.RELEASE2 2469 match:sim4:na_gb.dros 3823 match:sim4:na_pe.dros 469 match:tblastx:na_dbEST.insect 3254 match:tblastx:na_unigene.rodent 2383 ncRNA 12 oligo 33877 orthologous_region 1940 point_mutation 44 polyA_site 7 protein_binding_site 18 pseudogene 1 region 4 regulatory_region 10 repeat_region 514 rescue_fragment 32 scaffold 74 sequence_variant 31 snRNA 2 snoRNA 2 source 1 syntenic_region 305 tRNA 26 tRNA:trnascan 26 three_prime_UTR 2766 transcription_start_site 7632 transposable_element 276 transposable_element_insertion_site 496 transposable_element_pred 276 #==================================================