# Genome feature summary of dmel from Genome Feature merge (genomic and cytology features) [20040821] # ALL chromosomes BAC 706 CDS 18941 DNA_motif 5 aberration_junction 86 chromosome_arm 6 chromosome_band 5770 enhancer 27 five_prime_UTR 14641 gene 13449 insertion_site 457 intron 16362 mRNA 19572 match:HDP 139 match:RNAiHDP 110 match:assembly:path 434 match:blastx:aa_SPTR.dmel 207911 match:blastx:aa_SPTR.insect 16610 match:blastx:aa_SPTR.othinv 21451 match:blastx:aa_SPTR.othvert 18036 match:blastx:aa_SPTR.plant 11997 match:blastx:aa_SPTR.primate 20850 match:blastx:aa_SPTR.rodent 21644 match:blastx:aa_SPTR.worm 13765 match:blastx:aa_SPTR.yeast 5593 match:genie 11063 match:genscan 17811 match:repeatmasker 11758 match:sim4:na_ARGs.dros 1062 match:sim4:na_ARGsCDS.dros 984 match:sim4:na_DGC_dros 6458 match:sim4:na_dbEST.diff.dmel 85910 match:sim4:na_dbEST.same.dmel 169078 match:sim4:na_gadfly_dmel_r2 14249 match:sim4:na_gb.dmel 26531 match:sim4:na_gb.tpa.dmel 2214 match:sim4:na_smallRNA.dros 98 match:sim4:na_transcript_dmel_r31 19001 match:sim4:na_transcript_dmel_r32 18799 match:sim4tandem:na_gb.dmel 28787 match:tRNAscan-SE 295 match:tblastx:na_agambiae 101190 match:tblastx:na_dbEST.insect 34107 match:tblastx:na_dpse 263465 mature_peptide 7 ncRNA 130 oligo 197525 point_mutation 485 polyA_site 107 protein_binding_site 90 pseudogene 39 rRNA 96 region 30 regulatory_region 137 repeat_region 9199 rescue_fragment 136 scaffold 437 sequence_variant 232 snRNA 29 snoRNA 28 source 6 tRNA 295 three_prime_UTR 15018 transcription_start_site 36921 transposable_element 1571 transposable_element_insertion_site 16404 #================================================== # Chromosome 2L BAC 180 CDS 3353 aberration_junction 22 chromosome_arm 1 chromosome_band 946 enhancer 5 five_prime_UTR 2560 gene 2438 insertion_site 217 intron 2873 mRNA 3454 match:RNAiHDP 13 match:assembly:path 83 match:blastx:aa_SPTR.dmel 40528 match:blastx:aa_SPTR.insect 3440 match:blastx:aa_SPTR.othinv 4233 match:blastx:aa_SPTR.othvert 3631 match:blastx:aa_SPTR.plant 2524 match:blastx:aa_SPTR.primate 4095 match:blastx:aa_SPTR.rodent 4251 match:blastx:aa_SPTR.worm 2825 match:blastx:aa_SPTR.yeast 1237 match:genscan 3534 match:repeatmasker 1726 match:sim4:na_ARGs.dros 368 match:sim4:na_ARGsCDS.dros 335 match:sim4:na_DGC_dros 1151 match:sim4:na_dbEST.diff.dmel 14735 match:sim4:na_dbEST.same.dmel 29988 match:sim4:na_gadfly_dmel_r2 2507 match:sim4:na_gb.dmel 4317 match:sim4:na_gb.tpa.dmel 357 match:sim4:na_smallRNA.dros 43 match:sim4:na_transcript_dmel_r31 3387 match:sim4:na_transcript_dmel_r32 3400 match:sim4tandem:na_gb.dmel 4531 match:tRNAscan-SE 40 match:tblastx:na_agambiae 21593 match:tblastx:na_dbEST.insect 7223 match:tblastx:na_dpse 49872 mature_peptide 2 ncRNA 28 oligo 35420 point_mutation 179 polyA_site 41 protein_binding_site 17 pseudogene 11 region 11 regulatory_region 18 rescue_fragment 41 scaffold 83 sequence_variant 84 snRNA 15 snoRNA 4 source 1 tRNA 41 three_prime_UTR 2637 transcription_start_site 6850 transposable_element 305 transposable_element_insertion_site 3116 #================================================== # Chromosome 2R BAC 166 CDS 3854 DNA_motif 1 aberration_junction 7 chromosome_arm 1 chromosome_band 1278 enhancer 14 five_prime_UTR 3018 gene 2685 insertion_site 128 intron 3358 mRNA 4117 match:RNAiHDP 19 match:assembly:path 75 match:blastx:aa_SPTR.dmel 40382 match:blastx:aa_SPTR.insect 3364 match:blastx:aa_SPTR.othinv 4081 match:blastx:aa_SPTR.othvert 3457 match:blastx:aa_SPTR.plant 2365 match:blastx:aa_SPTR.primate 4131 match:blastx:aa_SPTR.rodent 4326 match:blastx:aa_SPTR.worm 2681 match:blastx:aa_SPTR.yeast 1008 match:genie 2639 match:genscan 3169 match:repeatmasker 2652 match:sim4:na_ARGs.dros 286 match:sim4:na_ARGsCDS.dros 270 match:sim4:na_DGC_dros 1241 match:sim4:na_dbEST.diff.dmel 18055 match:sim4:na_dbEST.same.dmel 34275 match:sim4:na_gadfly_dmel_r2 2834 match:sim4:na_gb.dmel 4653 match:sim4:na_gb.tpa.dmel 403 match:sim4:na_smallRNA.dros 6 match:sim4:na_transcript_dmel_r31 3875 match:sim4:na_transcript_dmel_r32 3849 match:sim4tandem:na_gb.dmel 5073 match:tRNAscan-SE 100 match:tblastx:na_agambiae 20514 match:tblastx:na_dbEST.insect 6350 match:tblastx:na_dpse 52828 mature_peptide 4 ncRNA 38 oligo 38879 point_mutation 143 polyA_site 31 protein_binding_site 9 pseudogene 12 rRNA 96 region 5 regulatory_region 13 repeat_region 2463 rescue_fragment 30 scaffold 74 sequence_variant 40 snoRNA 18 source 1 tRNA 98 three_prime_UTR 3141 transcription_start_site 5700 transposable_element 312 transposable_element_insertion_site 3913 #================================================== # Chromosome 3L BAC 32 CDS 3681 DNA_motif 4 aberration_junction 1 chromosome_arm 1 chromosome_band 1025 enhancer 1 five_prime_UTR 2817 gene 2636 insertion_site 17 intron 3143 mRNA 3763 match:RNAiHDP 32 match:assembly:path 84 match:blastx:aa_SPTR.dmel 36506 match:blastx:aa_SPTR.insect 2984 match:blastx:aa_SPTR.othinv 4046 match:blastx:aa_SPTR.othvert 3181 match:blastx:aa_SPTR.plant 2133 match:blastx:aa_SPTR.primate 3836 match:blastx:aa_SPTR.rodent 3968 match:blastx:aa_SPTR.worm 2427 match:blastx:aa_SPTR.yeast 998 match:genie 2662 match:genscan 3606 match:repeatmasker 2353 match:sim4:na_ARGs.dros 65 match:sim4:na_ARGsCDS.dros 62 match:sim4:na_DGC_dros 1355 match:sim4:na_dbEST.diff.dmel 17888 match:sim4:na_dbEST.same.dmel 33322 match:sim4:na_gadfly_dmel_r2 2797 match:sim4:na_gb.dmel 4405 match:sim4:na_gb.tpa.dmel 476 match:sim4:na_smallRNA.dros 4 match:sim4:na_transcript_dmel_r31 3650 match:sim4:na_transcript_dmel_r32 3522 match:sim4tandem:na_gb.dmel 4539 match:tRNAscan-SE 49 match:tblastx:na_agambiae 17793 match:tblastx:na_dbEST.insect 6442 match:tblastx:na_dpse 49825 mature_peptide 1 ncRNA 23 oligo 38372 point_mutation 17 polyA_site 7 protein_binding_site 1 pseudogene 3 region 9 regulatory_region 6 repeat_region 2298 rescue_fragment 5 scaffold 83 sequence_variant 11 snRNA 3 snoRNA 3 source 1 tRNA 50 three_prime_UTR 2894 transcription_start_site 7829 transposable_element 288 transposable_element_insertion_site 2790 #================================================== # Chromosome 3R BAC 234 CDS 4722 aberration_junction 39 chromosome_arm 1 chromosome_band 1313 enhancer 4 five_prime_UTR 3683 gene 3377 insertion_site 62 intron 4107 mRNA 4853 match:RNAiHDP 23 match:assembly:path 118 match:blastx:aa_SPTR.dmel 55768 match:blastx:aa_SPTR.insect 4160 match:blastx:aa_SPTR.othinv 5509 match:blastx:aa_SPTR.othvert 4707 match:blastx:aa_SPTR.plant 2993 match:blastx:aa_SPTR.primate 5265 match:blastx:aa_SPTR.rodent 5482 match:blastx:aa_SPTR.worm 3545 match:blastx:aa_SPTR.yeast 1378 match:genie 3338 match:genscan 4289 match:repeatmasker 1730 match:sim4:na_ARGs.dros 219 match:sim4:na_ARGsCDS.dros 211 match:sim4:na_DGC_dros 1572 match:sim4:na_dbEST.diff.dmel 21492 match:sim4:na_dbEST.same.dmel 40660 match:sim4:na_gadfly_dmel_r2 3547 match:sim4:na_gb.dmel 5439 match:sim4:na_gb.tpa.dmel 652 match:sim4:na_smallRNA.dros 34 match:sim4:na_transcript_dmel_r31 4697 match:sim4:na_transcript_dmel_r32 4706 match:sim4tandem:na_gb.dmel 5737 match:tRNAscan-SE 80 match:tblastx:na_agambiae 25021 match:tblastx:na_dbEST.insect 8045 match:tblastx:na_dpse 71436 ncRNA 26 oligo 49768 point_mutation 102 polyA_site 21 protein_binding_site 45 pseudogene 9 region 1 regulatory_region 90 repeat_region 1942 rescue_fragment 28 scaffold 118 sequence_variant 66 snRNA 9 snoRNA 1 source 1 tRNA 80 three_prime_UTR 3717 transcription_start_site 8122 transposable_element 288 transposable_element_insertion_site 3513 #================================================== # Chromosome 4 BAC 16 CDS 204 chromosome_arm 1 chromosome_band 53 five_prime_UTR 195 gene 80 intron 197 mRNA 207 match:HDP 139 match:blastx:aa_SPTR.dmel 2367 match:blastx:aa_SPTR.insect 186 match:blastx:aa_SPTR.othinv 204 match:blastx:aa_SPTR.othvert 207 match:blastx:aa_SPTR.plant 71 match:blastx:aa_SPTR.primate 227 match:blastx:aa_SPTR.rodent 158 match:blastx:aa_SPTR.worm 153 match:blastx:aa_SPTR.yeast 48 match:genie 25 match:genscan 82 match:repeatmasker 882 match:sim4:na_DGC_dros 85 match:sim4:na_dbEST.diff.dmel 429 match:sim4:na_dbEST.same.dmel 1524 match:sim4:na_gadfly_dmel_r2 100 match:sim4:na_gb.dmel 504 match:sim4:na_gb.tpa.dmel 7 match:sim4:na_transcript_dmel_r31 324 match:sim4:na_transcript_dmel_r32 190 match:sim4tandem:na_gb.dmel 508 match:tblastx:na_agambiae 1139 match:tblastx:na_dbEST.insect 390 match:tblastx:na_dpse 1796 oligo 1249 pseudogene 3 scaffold 5 source 1 three_prime_UTR 193 transcription_start_site 690 transposable_element 102 transposable_element_insertion_site 49 #================================================== # Chromosome X BAC 78 CDS 3127 aberration_junction 17 chromosome_arm 1 chromosome_band 1155 enhancer 3 five_prime_UTR 2368 gene 2233 insertion_site 33 intron 2684 mRNA 3178 match:RNAiHDP 23 match:assembly:path 74 match:blastx:aa_SPTR.dmel 32360 match:blastx:aa_SPTR.insect 2476 match:blastx:aa_SPTR.othinv 3378 match:blastx:aa_SPTR.othvert 2853 match:blastx:aa_SPTR.plant 1911 match:blastx:aa_SPTR.primate 3296 match:blastx:aa_SPTR.rodent 3459 match:blastx:aa_SPTR.worm 2134 match:blastx:aa_SPTR.yeast 924 match:genie 2399 match:genscan 3131 match:repeatmasker 2415 match:sim4:na_ARGs.dros 124 match:sim4:na_ARGsCDS.dros 106 match:sim4:na_DGC_dros 1054 match:sim4:na_dbEST.diff.dmel 13311 match:sim4:na_dbEST.same.dmel 29309 match:sim4:na_gadfly_dmel_r2 2464 match:sim4:na_gb.dmel 7213 match:sim4:na_gb.tpa.dmel 319 match:sim4:na_smallRNA.dros 11 match:sim4:na_transcript_dmel_r31 3068 match:sim4:na_transcript_dmel_r32 3132 match:sim4tandem:na_gb.dmel 8399 match:tRNAscan-SE 26 match:tblastx:na_agambiae 15130 match:tblastx:na_dbEST.insect 5657 match:tblastx:na_dpse 37708 ncRNA 15 oligo 33837 point_mutation 44 polyA_site 7 protein_binding_site 18 pseudogene 1 region 4 regulatory_region 10 repeat_region 2496 rescue_fragment 32 scaffold 74 sequence_variant 31 snRNA 2 snoRNA 2 source 1 tRNA 26 three_prime_UTR 2436 transcription_start_site 7730 transposable_element 276 transposable_element_insertion_site 3023 #==================================================