This file contains Rif1 extended gene region sequences for the Rif1[1] allele, the Rif1[2] allele and the wild type Rif1 gene. Sequence of the Rif1 extended gene region from the Rif1[1] allele. LOCUS Rif1_52I (Rif1[1]) extended_gene_region 4975 bp ds-DNA linear 13-JUN-2018 DEFINITION . ACCESSION VERSION SOURCE . ORGANISM . COMMENT JNpr559 - 1861-1886 COMMENT JNpr560 - 2363-2388 COMMENT COMMENT ApEinfo:methylated:1 ORIGIN 1 ATATATACAT TTATATATCT ATCTTATCCT TCGACATTGT GCTCGCAAAT GCGGACACTT 61 CCTTGCTACA CATGTATTCT ATATATTCGC ATATATCAAT TTACTAGTGC AAGCTACCCA 121 GGCGATGTAC ATAATAACAG AACCATAATA CGGCGATCGA TCGATCCGGA TATCTATGTA 181 TTTATGTGAG ACGCAACTGT AGCCCCTGCC ACACTCCGCC GGAAATTAGC TGACCCACGT 241 CACTTCTTCC CCGTTCCTTC TTTCGCACGT TGTGTGCCCT ATTTTCCCCT CCCATGTAGG 301 ACATTCTCAA TCACATCAGC GTATACAAGC TTTAAGCAAG TCATTGCATG TGCCACGCCC 361 CCTCGAACTG AACTGAACTC AACGCCCAAC CCGCCCAGCA TGAGTCCCGC AGCAAATACA 421 TTCCCTCCAT CCCCCCACCA TCCGTCATCC GCCAGAGGAA CCAGTCGAGG AGCTCGGAAA 481 TTGAACGTAG AACAGATTCC TTTTGTAGAT AGAAAACGAA ACAGTTGTTG GGAGATGGTA 541 ACCAGACGAA TGTCGAATGA CAAACGATAA ATAATGATAA ACTAAACTAA AGTTCTAAAC 601 AAAACAAAAC ACAGTAAAAT CGCACAGAAG CGCACGCATT ACAAAATACA AAAACCTGCA 661 ACGGTCGTTT TAAACGCTCC GTTCAGTTGT CTCAAAGAAA CGAGTAAACG ATAATAAGTG 721 CATAACGAAA ACCTTCTTTA GTCTAAGTTG CTCAAAGGAT AAAGTATTTT GATAGAACCG 781 GAAAGGATCG AGAAACAAAC CAATAAACCA CAAAGAATCG AATTGAATCG TAACGAAACA 841 AAGGCCCCAA ACGTGTAACG AATTTCCAAC AAATTGTTGC AAGTGTTTTC CTAGAATTAG 901 TCCTAATTAA ACTAAATGTG TGCAAATCGA AGCGTAACTA ATATTACAAT TAATCTAAAC 961 TAATTGAGGA AACATAAACC TAAACATAAA TCGGATAACA ACATCTAAGC TGGGTAGTCG 1021 CATGTAAATC TCTAACAATT AACAATTACC GACCTAAGTT AGACCTAAAA ATCGAAACAA 1081 AATCGAATCG CATTTAAAGA AATCTACATA ATAATAATAA TTTATACTAA TCTATATATA 1141 CTTATATGTA TGCTGTATGT ATGTATGACC CTATATGTAT ATGTAAAATG TTTTTGACTA 1201 TTTTTCACTA TTTATATTCA TATATATTAT ATATGCATAT ACGATACATG TGTAATAGCC 1261 CCTTTTGGTC ATTTTAGTTG TCTTTTATAT ATATTTAATA CGTGTATTAT TTTTATTAAT 1321 TATTCAAGTA TAACTATGCG CACCAATTAA ACGCATACCT TATGTATAAC CTATTGACAA 1381 ATATATATAT ATATATTATG TGTAATAGCT GTTGCTAAAC CAAGTTTAAT TATCAGTTTT 1441 TTATTTAACC TTTTTCCGGC GAAGCTTTCG ACGGTTCACA GCCGCAAAAT TGTGTTCAGC 1501 TAATTAATTA GGAAGAGAAC GTGTCCCGAG CAATAATGGG GGAAATGACA ATTATAATAT 1561 TCATTTCTGT GTGTAACAAT TATTTCCTAA TAAAATTGAC AAAGAAAAAT GTTTAAAATT 1621 AAACGAGTTT GTGTTTTGCA ACTATGTCGA TCCATAAAAG GTGCAGATTC TGTATGATTT 1681 GCAATTCCAC GTTTTAAATA CTTTTTAGCT TGTAATTGGG GAGTTTAAAA TGTTTAAAAA 1741 TCCAATTGAG TCCCGCCAGT TACAAAGTTA TTTTACGGAA ATCAGTTGAG GACGGCGGTT 1801 CTTGAGCTCT ACAATATCGA GTAAAAAGCA ATAAACGAGT AAAAGCTAAA ATAATAATAA 1861 CGGTAGTCCT TTGTGATGTT GCTAGGATTT TAAATTTAAA TTATTTTTAA CTTCCGGCGT 1921 TGCACAAGTC TGGCAACTCT GAGTTTCACA ATTTTGGTAT TTTCATACTG TCGGCGATAA 1981 CTTGTCGATG ACATATCGAC CTGCTTTTGC CACCTCTAGC CATAGCAATT CGCGCGCTTT 2041 TTTCTTCGAC AGTCTTTAAA ACTGCGGGAA AATAACTTGT GGCGTTCGCA GGCGGAAGAA 2101 AATAATATAA TTAAATAAGC GTATCATCCA GCGTACGAGC CATGGATGTA GACTTCGGCG 2161 CGCAGGCGGG GCAGTcctac cAGGATCTAG CCATCATGGA TCCAGAAGCC GCTCTTGATC 2221 TGGCGGTGGC GCAATTACCG CTGGAGTCGG TTTTGCAGCG CTACTTTGAC AAGAGTCCGC 2281 TGAAGAGCGC CGGCATGTTG GCTAAGTTTC TGTCCGCCCA AATGACGGCA AACGAAAAAC 2341 TTAAGACCAA CGTGCTAGAG ACTCTGTCGG AGAACCACTC CAAGGATTTC CTGGACCACG 2401 CTGTGCGCGA GAATCTGTCG TCGGTGGTGT GCGACCGCCT GAACCCGACC TCTGTGCTGG 2461 AGTACGTATG CGCCAAGTCC AAGATCAGCG CAAGTTGCCG CAACGGGCTG CTGGCCCAGG 2521 TACCCGAAAT TCTGAAAAGC GGCCCACGTT CCGATTCTGA GCGCCTGGCC TTCGTACAAC 2581 AACTGATGGT GCAGTGCAGC CCCGGTGACG ACCTGCTCCT CGATCTCATT GACCTTCTGA 2641 TGCGTACGCG TCGGGAGCGG AACAACAGCA CCTCCACTCA CATCTCCAAG GGCGTCGTAT 2701 CCGCCGTTGG AAGCCCTGAC AACGTGGCCG AGACCGCGGC CGACTCCTCA TCAAACTTAT 2761 AGATTGGACC TGACTTGAAA TTACGAATGA AATATTAAGC ACTTGGCCAT TGAACTCGAT 2821 TAAGTATGGG AAGTTCGATT GTAACTAGTT GGTTCTAGAT AGTTAAGTTT AAATTGCATT 2881 ATGTTTAAGA TTTATATTAT GCCCGTTGGT GTATTATGTT TTGCTGCAAA AACTTGCTTC 2941 ATATTCTTAC AATAAATTTA ATATTTTATT ATTATAAAAA GTAGAAAGTC ATCAATATAT 3001 TAGATAATAT ATATATATTG GTGGGAGAAC TTATTTATTT TTAAGTACAT CGATCATAAT 3061 TCCTATAGAT AAAGGAAAAC AGCAAAAGGA ACGAATTTGA TAAGAAAACC CAGACAATTA 3121 TTTTAACTTG TTTTCGAATT AAAATTAGTG TATTTAACTC TGGGAGTTCA TATACTCAAA 3181 AGTCCACACT GCAGACAATG TTACCTAAAA TCGTAATCGA TTGCCATATA ATCTAGGGAA 3241 ATCTTATCAG TACGTCAAAA GTGACGTGAC AGATACGTTT CCCATCAGGC AGATAAATAA 3301 TTAGTATGAT TTGTGTTAAC TTCGTGTTAG CTATTCAGCG AGTTCAATGG TACATTGATC 3361 AAATATTGTC AGGTAATCAT GATGGAATTG AAACGACTAT TCTGAGTGAT AAAGTGGTGC 3421 TGAATAGGTG TAGGGCATTC CAAAGTCTTA GAGTTGCGCT TTTTAGGTGC TTGTGATTAT 3481 GCTGGATACT TTTGGGGGTC AGGTAGTGGC ACCTTCAGTG GAGGGCAAGC TCCACGTAGA 3541 AACCTCCACT GGTGCCGGCC CAACCCTATC TGGTTGATTT GTTGTTCTGG TCGCGGCAAA 3601 GTCAAATTAC CCCGCCATGT CCGCCGCATC CATTGATAAT GTTCACGTGC TAGCAAACAA 3661 CGCGTCGTCG CCGACATCGG CAGATAGAGA TACGTCGACT GGCGACGCCG ACGATCTTTA 3721 AAATATATAC ACTACACTAT ATGGCATACA TGTGTGTAGG AATACGTCTA CGGCGACGTC 3781 TTTCGCTGGC ATTTGTGCAA ATACTACAAT ATAATATTAT GTTCCAACGT GGGCGGAGCG 3841 CTCTACACGC CACGGATGCG TGTTAGGTGC TCCGTCGGTG CTCCAACAAA GACGTTGGAT 3901 ACTTTGTATC AGTTACAGGC GGCGTGATAA GTGCGCTTTC GGCACAATTA GCCAGACGTT 3961 TTAATTTGGG AATGCCAAGG TCGTTTGTAG GTCTGTACTT AGCACTGCTG TTCGTAGGAT 4021 CCCGATCGCC AAATCGGCGG ATCTGGCCGC CCATATATAT AAATAGCGAT GGAAAGTTCT 4081 TGCCCAATTG CGCAAGTGAA ACTGACCTAC CTAACCCAGG CCATCTCGTG TACGATGACG 4141 CAGTCCGTCC GTACTTAAGT CTTCTGCTCC GTCTGCTCTC TGTCTGCGGA ATCGGCCAGC 4201 CAGTCAGCCG ATCGAGAGCA CAGTCAAATG TGTCTAACCC TCCCCTCGCA ACAAAGATAC 4261 TACATATTCA TACGCCCCAT GGACCGGTCG TATCCATATG TGATTCATTC ATAAGCCGGG 4321 TGCCCTCGAA ACGCGTGAGG CACTTGTGAA ATGGCCTCTC TTATCAGGCG GTTAGTTCCC 4381 GAATCGATTT CGATGGCGAG CCGTGGAAAT TCACGGAAGA GCAGCCTTGC TGGCCCGCGT 4441 TCCTATCAGC AGCACTCGCC GCATAATTGA ATAATCTGAA TCTGCCGAGC GAAGAGCGCG 4501 AAACAATAAA AATATCAGAT ACGCTGCCCG ACCGCCGCCA GTTACAGAAC AAATTCGCTG 4561 CGAACACAAC GTGGGCGCAT CTCGCAGGTG CCAAAAACGA GGTAGAAAGA CAAAGACAAG 4621 CAAATGTGCG GGGGGTTTTT GAAAGCCACC TATATAGAGA TCGGTTTATA GCCACATAAA 4681 TATGTACATA TATCCGTCGG GTATTTTGCT TAATTTTCGA TGAAACAATT TGTGACACAG 4741 AATAAACTTG TATAAAAAAA ACTAATGCTT ATCGCATTCT TGGATAACAC TTTTCAAAAT 4801 AAAATACGGC ATGTGTAAAT AGTGTTGAAA TGAGAAAATT GTTGGCTGTA CTGACATAAT 4861 TGCCTACATT TAACTATATT TATTTATGGT GAAGTGATTA AGGATGCTTG TGAAAATTGA 4921 ATTAATTCTG GTTAAGTGTC AAAAACTACT GTTTGCACAA AAAATAAGAA TGCTC // Sequence of the Rif1 extended gene region from the Rif1[2] allele. LOCUS Rif1_52O (Rif1[2] extended_gene_region 6790 bp ds-DNA linear 13-JUN-2018 DEFINITION . ACCESSION VERSION SOURCE . ORGANISM . COMMENT JNpr559 - 1861-1886 COMMENT JNpr560 - 4187-4203 COMMENT COMMENT ApEinfo:methylated:1 ORIGIN 1 atatatacat ttatatatct atcttatcct tcgacattgt gctcgcaaat gcggacactt 61 ccttgctaca catgtattct atatattcgc atatatcaat ttactagtgc aagctaccca 121 ggcgatgtac ataataacag aaccataata cggcgatcga tcgatccgga tatctatgta 181 tttatgtgag acgcaactgt agcccctgcc acactccgcc ggaaattagc tgacccacgt 241 cacttcttcc ccgttccttc tttcgcacgt tgtgtgccct attttcccct cccatgtagg 301 acattctcaa tcacatcagc gtatacaagc tttaagcaag tcattgcatg tgccacgccc 361 cctcgaactg aactgaactc aacgcccaac ccgcccagca tgagtcccgc agcaaataca 421 ttccctccat ccccccacca tccgtcatcc gccagaggaa ccagtcgagg agctcggaaa 481 ttgaacgtag aacagattcc ttttgtagat agaaaacgaa acagttgttg ggagatggta 541 accagacgaa tgtcgaatga caaacgataa ataatgataa actaaactaa agttctaaac 601 aaaacaaaac acagtaaaat cgcacagaag cgcacgcatt acaaaataca aaaacctgca 661 acggtcgttt taaacgctcc gttcagttgt ctcaaagaaa cgagtaaacg ataataagtg 721 cataacgaaa accttcttta gtctaagttg ctcaaaggat aaagtatttt gatagaaccg 781 gaaaggatcg agaaacaaac caataaacca caaagaatcg aattgaatcg taacgaaaca 841 aaggccccaa acgtgtaacg aatttccaac aaattgttgc aagtgttttc ctagaattag 901 tcctaattaa actaaatgtg tgcaaatcga agcgtaacta atattacaat taatctaaac 961 taattgagga aacataaacc taaacataaa tcggataaca acatctaagc tgggtagtcg 1021 catgtaaatc tctaacaatt aacaattacc gacctaagtt agacctaaaa atcgaaacaa 1081 aatcgaatcg catttaaaga aatctacata ataataataa tttatactaa tctatatata 1141 cttatatgta tgctgtatgt atgtatgacc ctatatgtat atgtaaaatg tttttgacta 1201 tttttcacta tttatattca tatatattat atatgcatat acgatacatg tgtaatagcc 1261 ccttttggtc attttagttg tcttttatat atatttaata cgtgtattat ttttattaat 1321 tattcaagta taactatgcg caccaattaa acgcatacct tatgtataac ctattgacaa 1381 atatatatat atatattatg tgtaatagct gttgctaaac caagtttaat tatcagtttt 1441 ttatttaacc tttttccggc gaagctttcg acggttcaca gccgcaaaat tgtgttcagc 1501 taattaatta ggaagagaac gtgtcccgag caataatggg ggaaatgaca attataatat 1561 tcatttctgt gtgtaacaat tatttcctaa taaaattgac aaagaaaaat gtttaaaatt 1621 aaacgagttt gtgttttgca actatgtcga tccataaaag gtgcagattc tgtatgattt 1681 gcaattccac gttttaaata ctttttagct tgtaattggg gagtttaaaa tgtttaaaaa 1741 tccaattgag tcccgccagt tacaaagtta ttttacggaa atcagttgag gacggcggtt 1801 cttgagctct acaatatcga gtaaaaagca ataaacgagt aaaagctaaa ataataataa 1861 cggtagtcct ttgtgatgtt gctaggattt taaatttaaa ttatttttaa cttccggcgt 1921 tgcacaagtc tggcaactct gagtttcaca attttggtat tttcatactg tcggcgataa 1981 cttgtcgatg acatatcgac ctgcttttgc cacctctagc catagcaatt cgcgcgcttt 2041 tttcttcgac agtctttaaa actgcgggaa aataacttgt ggcgttcgca ggcggaagaa 2101 aataatataa ttaaataagc gtatcatcca gcgtacgagc catggatgta gacttcggcg 2161 cgcaggcggg gccccgGGGG AATTCAAGAA AAGTTTCGCA AGCTACCCAT GAAGACGATG 2221 GCCAATCAGC TCAAAGAACT CTTTAAGGCA GATGATCTCT TCGTGATCAT CCCATCAGTG 2281 TGGAGTCTGA ATCCAGAGAA GCTGACGGAT CGTCAAAAGG AGCGCTTCGC TGAAAAGTCG 2341 GACATTCCAG CTCTGTACAA TGATATGTCG CAGTCTCAGG ACTCGGCTTC CATTAAGCCC 2401 TGGACCCCTA AGAAGGTGGT TATTGCAAAG AGCAAACAGG GTGAGCTGGC CTTAACCGGC 2461 AAGGATGACA ACGGCGAGGT GATCGATATA ACGGCCAGCG AGGAGTCTGA GAAGGAACCA 2521 GTGAGAGTTG ACGTAGTTAC ACCCATCCGA AAGAAACCGG GGCGTAAGTC CCAAGCTCAA 2581 AAAGAACTCG AGGCCGCTGC CAGGGCTGCT TCTCTTGCCG AGGAGCCGCC AAAGCGTCAG 2641 ACGCGAACAC GGGCGGCTCA AAAAGAAACG GAACAGGTGG CTCAGCCACA GCCAGCGTTT 2701 GAACCACAGC TCAGATCGCC AAAGAAATTG CCACCGTCCC CGGTCGTTCA ATCTACAGCA 2761 GGTACGTGAA ACAAGTAACA GGTGAGCTAA GGATGTTAAT CCCAACACTT GAATTTTTGC 2821 AGCTGCCGTT AAGCAGGCAA AGGTTGCAAA ACCCACCCCC GTTGTGGTAA TCGCGCAGAG 2881 CGAGGATCTT TTCCCGGAAG TCGCAGCTGA GCCAGAGCCT CAGCCAGAAC CGGTTAAGAA 2941 ACCCGACCCT GTTCCAGAAA CAACACAACT GACCCCGCCT GATGTACCCT TGGAAGCTGT 3001 ACCCTCTACC CAACTGCCTG GAAGCAGCGG AGATCCTGCC GCTTCTGCGG GGGCTGTGGC 3061 TGCCGGTGAG ATGTCTCCAA AGAAATCAGG CACGCGAATA TACAATTTGG TAAGTAAATC 3121 GCATTAGACT TGGTTAAAAC GGTTACTTTA TTACAATGTT TTTATGAACT TTTTTAATTT 3181 CCGCCTTCTT TTCGCAGAGC TCTCCACCTG ATCGCAAGCA GACAAACAAC TCCTCGAGTC 3241 CAACATTGCG GCCCAAGCCC ACGGGACATC TGACTGGACG CGGTGCTCAG TTGATCAATA 3301 TGATTCGCAA CAAGAAGCTG GACGCTGCTT CCGGCTCGCC GTATGCGTGC ATGTCTACTT 3361 CGCGCCTGGT TCACCAAGTG ACGCCGGCCC GTGCCCAGGA TCGCGCCGAG CAGGTGTCCA 3421 CTCCCACCAG CGAGCTAAAC GAGCTGACGG GCACGGATCA CACTTCCACA CCGATTCAGG 3481 CACCTCCCTC GAAGGATCTA TTGGTGTTTT CCAAACGACT GCCATCCCCA TCGGCCAGTC 3541 CCTCCGTAAG CATCTTGAAG CGCAAGCTAC GATGCGAAAG TCTCGATGAT GTTACTCTGG 3601 ACTCGCCGGC TCTAAAGCGT AAGCGAGTTA GTTTCCACGA CCCACCGGTG TCCGTCACCA 3661 AGGAGTATCT ACGCGATGCT GAGGAGACGC GCAGCAGTTT GAAGCCCAAA CGCTGTCTGC 3721 TTATGGACAA GGTGGCCCAG ACCACCGAGA TGCGCCAGGC GTTGAGGAGA CGTGGTCGGT 3781 TAGACAGCAT AATCGAAATA GAGCGTTTCG CTAGCGAACA GACGGCCAGA ACAGCGACGA 3841 CGGACAAGAG CCTGGACAAA TCCACTGGCG AAGCACCCGA GGAGGATGCT TTCACCAGCT 3901 TAAAGTGGAA CGACACAGGC AACGCGCACA ACATTAGCAT ATCCGAAGAA CCCGTCAAGG 3961 CGATGGAAGT GGAGTCTGAA CTCGAGACAG CCGGCCAGGA TCTAGCCATC ATGGATCCAG 4021 AAGCCGCTCT TGATCTGGCG GTGGCGCAAT TACCGCTGGA GTCGGTTTTG CAGCGCTACT 4081 TTGACAAGAG TCCGCTGAAG AGCGCCGGCA TGTTGGCTAA GTTTCTGTCC GCCCAAATGA 4141 CGGCAAACGA AAAACTTAAG ACCAACGTGC TAGAGACTCT GTCGGAGAAC CACTCCAAGG 4201 ATTTCCTGGA CCACGCTGTG CGCGAGAATC TGTCGTCGGT GGTGTGCGAC CGCCTGAACC 4261 CGACCTCTGT GCTGGAGTAC GTATGCGCCA AGTCCAAGAT CAGCGCAAGT TGCCGCAACG 4321 GGCTGCTGGC CCAGGTACCC GAAATTCTGA AAAGCGGCCC ACGTTCCGAT TCTGAGCGCC 4381 TGGCCTTCGT ACAACAACTG ATGGTGCAGT GCAGCCCCGG TGACGACCTG CTCCTCGATC 4441 TCATTGACCT TCTGATGCGT ACGCGTCGGG AGCGGAACAA CAGCACCTCC ACTCACATCT 4501 CCAAGGGCGT CGTATCCGCC GTTGGAAGCC CTGACAACGT GGCCGAGACC GCGGCCGACT 4561 CCTCATCAAA CTTATAGATT GGACCTGACT TGAAATTACG AATGAAATAT TAAGCACTTG 4621 GCCATTGAAC TCGATTAAGT ATGGGAAGTT CGATTGTAAC TAGTTGGTTC TAGATAGTTA 4681 AGTTTAAATT GCATTATGTT TAAGATTTAT ATTATGCCCG TTGGTGTATT ATGTTTTGCT 4741 GCAAAAACTT GCTTCATATT CTTACAATAA ATTTAATATT TTATTATTAT AAAAAGTAGA 4801 AAGTCATCAA TATATTAGAT AATATATATA TATTGGTGGG AGAACTTATT TATTTTTAAG 4861 TACATCGATC ATAATTCCTA TAGATAAAGG AAAACAGCAA AAGGAACGAA TTTGATAAGA 4921 AAACCCAGAC AATTATTTTA ACTTGTTTTC GAATTAAAAT TAGTGTATTT AACTCTGGGA 4981 GTTCATATAC TCAAAAGTCC ACACTGCAGA CAATGTTACC TAAAATCGTA ATCGATTGCC 5041 ATATAATCTA GGGAAATCTT ATCAGTACGT CAAAAGTGAC GTGACAGATA CGTTTCCCAT 5101 CAGGCAGATA AATAATTAGT ATGATTTGTG TTAACTTCGT GTTAGCTATT CAGCGAGTTC 5161 AATGGTACAT TGATCAAATA TTGTCAGGTA ATCATGATGG AATTGAAACG ACTATTCTGA 5221 GTGATAAAGT GGTGCTGAAT AGGTGTAGGG CATTCCAAAG TCTTAGAGTT GCGCTTTTTA 5281 GGTGCTTGTG ATTATGCTGG ATACTTTTGG GGGTCAGGTA GTGGCACCTT CAGTGGAGGG 5341 CAAGCTCCAC GTAGAAACCT CCACTGGTGC CGGCCCAACC CTATCTGGTT GATTTGTTGT 5401 TCTGGTCGCG GCAAAGTCAA ATTACCCCGC CATGTCCGCC GCATCCATTG ATAATGTTCA 5461 CGTGCTAGCA AACAACGCGT CGTCGCCGAC ATCGGCAGAT AGAGATACGT CGACTGGCGA 5521 CGCCGACGAT CTTTAAAATA TATACACTAC ACTATATGGC ATACATGTGT GTAGGAATAC 5581 GTCTACGGCG ACGTCTTTCG CTGGCATTTG TGCAAATACT ACAATATAAT ATTATGTTCC 5641 AACGTGGGCG GAGCGCTCTA CACGCCACGG ATGCGTGTTA GGTGCTCCGT CGGTGCTCCA 5701 ACAAAGACGT TGGATACTTT GTATCAGTTA CAGGCGGCGT GATAAGTGCG CTTTCGGCAC 5761 AATTAGCCAG ACGTTTTAAT TTGGGAATGC CAAGGTCGTT TGTAGGTCTG TACTTAGCAC 5821 TGCTGTTCGT AGGATCCCGA TCGCCAAATC GGCGGATCTG GCCGCCCATA TATATAAATA 5881 GCGATGGAAA GTTCTTGCCC AATTGCGCAA GTGAAACTGA CCTACCTAAC CCAGGCCATC 5941 TCGTGTACGA TGACGCAGTC CGTCCGTACT TAAGTCTTCT GCTCCGTCTG CTCTCTGTCT 6001 GCGGAATCGG CCAGCCAGTC AGCCGATCGA GAGCACAGTC AAATGTGTCT AACCCTCCCC 6061 TCGCAACAAA GATACTACAT ATTCATACGC CCCATGGACC GGTCGTATCC ATATGTGATT 6121 CATTCATAAG CCGGGTGCCC TCGAAACGCG TGAGGCACTT GTGAAATGGC CTCTCTTATC 6181 AGGCGGTTAG TTCCCGAATC GATTTCGATG GCGAGCCGTG GAAATTCACG GAAGAGCAGC 6241 CTTGCTGGCC CGCGTTCCTA TCAGCAGCAC TCGCCGCATA ATTGAATAAT CTGAATCTGC 6301 CGAGCGAAGA GCGCGAAACA ATAAAAATAT CAGATACGCT GCCCGACCGC CGCCAGTTAC 6361 AGAACAAATT CGCTGCGAAC ACAACGTGGG CGCATCTCGC AGGTGCCAAA AACGAGGTAG 6421 AAAGACAAAG ACAAGCAAAT GTGCGGGGGG TTTTTGAAAG CCACCTATAT AGAGATCGGT 6481 TTATAGCCAC ATAAATATGT ACATATATCC GTCGGGTATT TTGCTTAATT TTCGATGAAA 6541 CAATTTGTGA CACAGAATAA ACTTGTATAA AAAAAACTAA TGCTTATCGC ATTCTTGGAT 6601 AACACTTTTC AAAATAAAAT ACGGCATGTG TAAATAGTGT TGAAATGAGA AAATTGTTGG 6661 CTGTACTGAC ATAATTGCCT ACATTTAACT ATATTTATTT ATGGTGAAGT GATTAAGGAT 6721 GCTTGTGAAA ATTGAATTAA TTCTGGTTAA GTGTCAAAAA CTACTGTTTG CACAAAAAAT 6781 AAGAATGCTC // Extended gene region sequence for wild type Rif1[1]. LOCUS Rif1_extended_gene_region 8839 bp ds-DNA linear 13-JUN-2018 DEFINITION . ACCESSION VERSION SOURCE . ORGANISM . COMMENT JNpr559 - 1861-1886 COMMENT JNpr560 - 6227-6252 COMMENT COMMENT ApEinfo:methylated:1 ORIGIN 1 ATATATACAT TTATATATCT ATCTTATCCT TCGACATTGT GCTCGCAAAT GCGGACACTT 61 CCTTGCTACA CATGTATTCT ATATATTCGC ATATATCAAT TTACTAGTGC AAGCTACCCA 121 GGCGATGTAC ATAATAACAG AACCATAATA CGGCGATCGA TCGATCCGGA TATCTATGTA 181 TTTATGTGAG ACGCAACTGT AGCCCCTGCC ACACTCCGCC GGAAATTAGC TGACCCACGT 241 CACTTCTTCC CCGTTCCTTC TTTCGCACGT TGTGTGCCCT ATTTTCCCCT CCCATGTAGG 301 ACATTCTCAA TCACATCAGC GTATACAAGC TTTAAGCAAG TCATTGCATG TGCCACGCCC 361 CCTCGAACTG AACTGAACTC AACGCCCAAC CCGCCCAGCA TGAGTCCCGC AGCAAATACA 421 TTCCCTCCAT CCCCCCACCA TCCGTCATCC GCCAGAGGAA CCAGTCGAGG AGCTCGGAAA 481 TTGAACGTAG AACAGATTCC TTTTGTAGAT AGAAAACGAA ACAGTTGTTG GGAGATGGTA 541 ACCAGACGAA TGTCGAATGA CAAACGATAA ATAATGATAA ACTAAACTAA AGTTCTAAAC 601 AAAACAAAAC ACAGTAAAAT CGCACAGAAG CGCACGCATT ACAAAATACA AAAACCTGCA 661 ACGGTCGTTT TAAACGCTCC GTTCAGTTGT CTCAAAGAAA CGAGTAAACG ATAATAAGTG 721 CATAACGAAA ACCTTCTTTA GTCTAAGTTG CTCAAAGGAT AAAGTATTTT GATAGAACCG 781 GAAAGGATCG AGAAACAAAC CAATAAACCA CAAAGAATCG AATTGAATCG TAACGAAACA 841 AAGGCCCCAA ACGTGTAACG AATTTCCAAC AAATTGTTGC AAGTGTTTTC CTAGAATTAG 901 TCCTAATTAA ACTAAATGTG TGCAAATCGA AGCGTAACTA ATATTACAAT TAATCTAAAC 961 TAATTGAGGA AACATAAACC TAAACATAAA TCGGATAACA ACATCTAAGC TGGGTAGTCG 1021 CATGTAAATC TCTAACAATT AACAATTACC GACCTAAGTT AGACCTAAAA ATCGAAACAA 1081 AATCGAATCG CATTTAAAGA AATCTACATA ATAATAATAA TTTATACTAA TCTATATATA 1141 CTTATATGTA TGCTGTATGT ATGTATGACC CTATATGTAT ATGTAAAATG TTTTTGACTA 1201 TTTTTCACTA TTTATATTCA TATATATTAT ATATGCATAT ACGATACATG TGTAATAGCC 1261 CCTTTTGGTC ATTTTAGTTG TCTTTTATAT ATATTTAATA CGTGTATTAT TTTTATTAAT 1321 TATTCAAGTA TAACTATGCG CACCAATTAA ACGCATACCT TATGTATAAC CTATTGACAA 1381 ATATATATAT ATATATTATG TGTAATAGCT GTTGCTAAAC CAAGTTTAAT TATCAGTTTT 1441 TTATTTAACC TTTTTCCGGC GAAGCTTTCG ACGGTTCACA GCCGCAAAAT TGTGTTCAGC 1501 TAATTAATTA GGAAGAGAAC GTGTCCCGAG CAATAATGGG GGAAATGACA ATTATAATAT 1561 TCATTTCTGT GTGTAACAAT TATTTCCTAA TAAAATTGAC AAAGAAAAAT GTTTAAAATT 1621 AAACGAGTTT GTGTTTTGCA ACTATGTCGA TCCATAAAAG GTGCAGATTC TGTATGATTT 1681 GCAATTCCAC GTTTTAAATA CTTTTTAGCT TGTAATTGGG GAGTTTAAAA TGTTTAAAAA 1741 TCCAATTGAG TCCCGCCAGT TACAAAGTTA TTTTACGGAA ATCAGTTGAG GACGGCGGTT 1801 CTTGAGCTCT ACAATATCGA GTAAAAAGCA ATAAACGAGT AAAAGCTAAA ATAATAATAA 1861 CGGTAGTCCT TTGTGATGTT GCTAGGATTT TAAATTTAAA TTATTTTTAA CTTCCGGCGT 1921 TGCACAAGTC TGGCAACTCT GAGTTTCACA ATTTTGGTAT TTTCATACTG TCGGCGATAA 1981 CTTGTCGATG ACATATCGAC CTGCTTTTGC CACCTCTAGC CATAGCAATT CGCGCGCTTT 2041 TTTCTTCGAC AGTCTTTAAA ACTGCGGGAA AATAACTTGT GGCGTTCGCA GGCGGAAGAA 2101 AATAATATAA TTAAATAAGC GTATCATCCA GCGTACGAGC CATGGATGTA GACTTCGGCG 2161 CGCAGGCGGG GCAGTCCTAC CGCACGGTGC AGCTTTCCGC GAAAGAAGTG CTCGCTGCTG 2221 GCCGCCGTCA GCATTATTGC AACGTAAGTA GGGCACCCAA TTGCAGCGCC AAGTATGTAT 2281 CTCACTATAG CTCCGGCCCC CCACCTATAT TTCCATGTGC ACCACCAGAT GATCGACTTG 2341 TTGGCCAGCA GCTGCAAAAG CTCCGGTTTG ATAGCCACTT CCTTTACGGA TGACGAACTG 2401 GTGGAGTTCT GGCTGGGAGA TATCCTGCCG CTTATGTTCG ATGCGGACCG AAAGATCCAG 2461 GACTGTGCCG TGGCAGCTCT TGCGGAGGCA CTGGTGGCTC TTGACGTGTC CGTTATCCAC 2521 TCGGCCAAGT GCTGGCCTCA GATCCGCAGT GAATTTGTCG ACAAATACAC CATCATCATC 2581 GGGGAGATGC GCGATGCTAA GAACTCCAAC TGGCACAAAA TATGGACGCT GCTGGTACAA 2641 ATCATGGACG AGGATTTGCT CAGGGGCTGT GTATATATCA ACAAATTCTT GGCTCTGGTT 2701 GAATTGGGCT TCCGCAACCC GGATAATGGT GTGCGGTCGG AGGCATTTCT TTGCTGGCGC 2761 GTGCTCATCA AGATCTTTGC CGCCTACGAC GAACTGACAT CCGCGAAGAG GCTTCGTTTG 2821 CTGCTGATCC CCCTGCGCAC TTCACAATCG CGATCCTCGC ACGTGAGTGG CATCAAGTTG 2881 CGAGTGTGGT GGTATCTGCT CAGCTGCCTG GACCACGAGT TACCCAAGTC TTTTGACAGC 2941 GCCGTGGAGC ACTTTTTGGC TTTTATGCTA GGCGGAGGTC CACGAAATCT GGCTACGGGT 3001 CTGGCGCACA ACTACCAGAC GGCTCGGGAG TTGGCCCTGC CCTGCCTTGT GGCCCTTTGG 3061 GGCGTGGAGT CCAGTGAACC GTTGCAGCGT CTAATGAGAG AGCTACGCTT GGAGACCTTG 3121 GTCCAGCCCT CGCCTCTGAT GAGCGTAGAG GTATTCCAAC AGCATTGGAA ACCTCTTTTG 3181 GCCGCTGCCG TTTCCGGTTT AAAGTTGCTT ACCGAGAACG ATGCCACAGA AGCGGAACAA 3241 CTCCTGCTGC AGTTGCTCGT GCGGAATCTG TGCCTTGCCA TGTTTCGGTT GGCAGTTGCT 3301 CCCTTCAATG TGGCGTGCTG CAGTGAAATC GAGAAAATCC TGCAGGCTGA AGATAACTCC 3361 GGTGGCCGAG TTGTACGCGC TCTTTTCAAT ACCATAGCCG CAGATAACTT GGTAATGGAG 3421 CGTGTGTCTG GAAGCGACCA TCTTGATGTT CTGGAGGCCT ACTTGAAACT TGTACTGAAA 3481 TCCAAGACAG AAGTTCCGGC AGCAATTCTG CAGCGAAGTA TCGCATGCAT TTTCGCAGTC 3541 GATCGTATCG AGGCGAACAA TCAGAACGAG TTCCGGATGC TGGGCTCCTT CGCTGAGCTT 3601 CTGATGCAGG CCAACGACGA AGAGGACTTT GAGGGATTCG CATTCAAGCT GCAGGTGTGG 3661 CGACAGGTGT CGCAGGCGTT GTCCAACTAT CTGCGAAACA ATGCGCTTGA ATACCGTGTG 3721 GCACACAACG CTTCCCTTTT GGACACTTGG CTTTTATGGC CACTTCAGAC ACTGGCTGCC 3781 TTTGCGGGAC GGCGTGCTAG CAACTCCTTC GATGCCTCTT TTTGCGATCA ATGGCGCCAA 3841 CTGGTAAACG CAGGCCAAAA CGCGCCGGGG AGGAAGAAGT TCTTGACGGA CCTGAAAGCC 3901 ACACTTACAG ACCTCCTAAA GAGCAAGGAT GAACCGCTCT TTGCAGAGCT CTTCGATGCT 3961 TATGTGACCT CCTTAATCAA GTTTGGACTC TGTAAGGAGG CACCTTTGTA TAAGGACGTT 4021 TTTGGGCTAC TTCAAACCAT TTTCGAGCAG CCCTCCTCCC AGAAAACGCT CGAAGCCTGT 4081 TTAAACACCC TCCGCAACCT GGTGGTGGAG TTGCGGCAAA ACGAACTAAT GGTAGTGTTC 4141 GATTCATTGA AACCAACATT GTCTTCTGGC ATCCAGTGCT GGAATAAGAT GAAGTGCGAA 4201 GGCGGATTCT TGGAGGAGTG GAAGCGGGGA ATTCAAGAAA AGTTTCGCAA GCTACCCATG 4261 AAGACGATGG CCAATCAGCT CAAAGAACTC TTTAAGGCAG ATGATCTCTT CGTGATCATC 4321 CCATCAGTGT GGAGTCTGAA TCCAGAGAAG CTGACGGATC GTCAAAAGGA GCGCTTCGCT 4381 GAAAAGTCGG ACATTCCAGC TCTGTACAAT GATATGTCGC AGTCTCAGGA CTCGGCTTCC 4441 ATTAAGCCCT GGACCCCTAA GAAGGTGGTT ATTGCAAAGA GCAAACAGGG TGAGCTGGCC 4501 TTAACCGGCA AGGATGACAA CGGCGAGGTG ATCGATATAA CGGCCAGCGA GGAGTCTGAG 4561 AAGGAACCAG TGAGAGTTGA CGTAGTTACA CCCATCCGAA AGAAACCGGG GCGTAAGTCC 4621 CAAGCTCAAA AAGAACTCGA GGCCGCTGCC AGGGCTGCTT CTCTTGCCGA GGAGCCGCCA 4681 AAGCGTCAGA CGCGAACACG GGCGGCTCAA AAAGAAACGG AACAGGTGGC TCAGCCACAG 4741 CCAGCGTTTG AACCACAGCT CAGATCGCCA AAGAAATTGC CACCGTCCCC GGTCGTTCAA 4801 TCTACAGCAG GTACGTGAAA CAAGTAACAG GTGAGCTAAG GATGTTAATC CCAACACTTG 4861 AATTTTTGCA GCTGCCGTTA AGCAGGCAAA GGTTGCAAAA CCCACCCCCG TTGTGGTAAT 4921 CGCGCAGAGC GAGGATCTTT TCCCGGAAGT CGCAGCTGAG CCAGAGCCTC AGCCAGAACC 4981 GGTTAAGAAA CCCGACCCTG TTCCAGAAAC AACACAACTG ACCCCGCCTG ATGTACCCTT 5041 GGAAGCTGTA CCCTCTACCC AACTGCCTGG AAGCAGCGGA GATCCTGCCG CTTCTGCGGG 5101 GGCTGTGGCT GCCGGTGAGA TGTCTCCAAA GAAATCAGGC ACGCGAATAT ACAATTTGGT 5161 AAGTAAATCG CATTAGACTT GGTTAAAACG GTTACTTTAT TACAATGTTT TTATGAACTT 5221 TTTTAATTTC CGCCTTCTTT TCGCAGAGCT CTCCACCTGA TCGCAAGCAG ACAAACAACT 5281 CCTCGAGTCC AACATTGCGG CCCAAGCCCA CGGGACATCT GACTGGACGC GGTGCTCAGT 5341 TGATCAATAT GATTCGCAAC AAGAAGCTGG ACGCTGCTTC CGGCTCGCCG TATGCGTGCA 5401 TGTCTACTTC GCGCCTGGTT CACCAAGTGA CGCCGGCCCG TGCCCAGGAT CGCGCCGAGC 5461 AGGTGTCCAC TCCCACCAGC GAGCTAAACG AGCTGACGGG CACGGATCAC ACTTCCACAC 5521 CGATTCAGGC ACCTCCCTCG AAGGATCTAT TGGTGTTTTC CAAACGACTG CCATCCCCAT 5581 CGGCCAGTCC CTCCGTAAGC ATCTTGAAGC GCAAGCTACG ATGCGAAAGT CTCGATGATG 5641 TTACTCTGGA CTCGCCGGCT CTAAAGCGTA AGCGAGTTAG TTTCCACGAC CCACCGGTGT 5701 CCGTCACCAA GGAGTATCTA CGCGATGCTG AGGAGACGCG CAGCAGTTTG AAGCCCAAAC 5761 GCTGTCTGCT TATGGACAAG GTGGCCCAGA CCACCGAGAT GCGCCAGGCG TTGAGGAGAC 5821 GTGGTCGGTT AGACAGCATA ATCGAAATAG AGCGTTTCGC TAGCGAACAG ACGGCCAGAA 5881 CAGCGACGAC GGACAAGAGC CTGGACAAAT CCACTGGCGA AGCACCCGAG GAGGATGCTT 5941 TCACCAGCTT AAAGTGGAAC GACACAGGCA ACGCGCACAA CATTAGCATA TCCGAAGAAC 6001 CCGTCAAGGC GATGGAAGTG GAGTCTGAAC TCGAGACAGC CGGCCAGGAT CTAGCCATCA 6061 TGGATCCAGA AGCCGCTCTT GATCTGGCGG TGGCGCAATT ACCGCTGGAG TCGGTTTTGC 6121 AGCGCTACTT TGACAAGAGT CCGCTGAAGA GCGCCGGCAT GTTGGCTAAG TTTCTGTCCG 6181 CCCAAATGAC GGCAAACGAA AAACTTAAGA CCAACGTGCT AGAGACTCTG TCGGAGAACC 6241 ACTCCAAGGA TTTCCTGGAC CACGCTGTGC GCGAGAATCT GTCGTCGGTG GTGTGCGACC 6301 GCCTGAACCC GACCTCTGTG CTGGAGTACG TATGCGCCAA GTCCAAGATC AGCGCAAGTT 6361 GCCGCAACGG GCTGCTGGCC CAGGTACCCG AAATTCTGAA AAGCGGCCCA CGTTCCGATT 6421 CTGAGCGCCT GGCCTTCGTA CAACAACTGA TGGTGCAGTG CAGCCCCGGT GACGACCTGC 6481 TCCTCGATCT CATTGACCTT CTGATGCGTA CGCGTCGGGA GCGGAACAAC AGCACCTCCA 6541 CTCACATCTC CAAGGGCGTC GTATCCGCCG TTGGAAGCCC TGACAACGTG GCCGAGACCG 6601 CGGCCGACTC CTCATCAAAC TTATAGATTG GACCTGACTT GAAATTACGA ATGAAATATT 6661 AAGCACTTGG CCATTGAACT CGATTAAGTA TGGGAAGTTC GATTGTAACT AGTTGGTTCT 6721 AGATAGTTAA GTTTAAATTG CATTATGTTT AAGATTTATA TTATGCCCGT TGGTGTATTA 6781 TGTTTTGCTG CAAAAACTTG CTTCATATTC TTACAATAAA TTTAATATTT TATTATTATA 6841 AAAAGTAGAA AGTCATCAAT ATATTAGATA ATATATATAT ATTGGTGGGA GAACTTATTT 6901 ATTTTTAAGT ACATCGATCA TAATTCCTAT AGATAAAGGA AAACAGCAAA AGGAACGAAT 6961 TTGATAAGAA AACCCAGACA ATTATTTTAA CTTGTTTTCG AATTAAAATT AGTGTATTTA 7021 ACTCTGGGAG TTCATATACT CAAAAGTCCA CACTGCAGAC AATGTTACCT AAAATCGTAA 7081 TCGATTGCCA TATAATCTAG GGAAATCTTA TCAGTACGTC AAAAGTGACG TGACAGATAC 7141 GTTTCCCATC AGGCAGATAA ATAATTAGTA TGATTTGTGT TAACTTCGTG TTAGCTATTC 7201 AGCGAGTTCA ATGGTACATT GATCAAATAT TGTCAGGTAA TCATGATGGA ATTGAAACGA 7261 CTATTCTGAG TGATAAAGTG GTGCTGAATA GGTGTAGGGC ATTCCAAAGT CTTAGAGTTG 7321 CGCTTTTTAG GTGCTTGTGA TTATGCTGGA TACTTTTGGG GGTCAGGTAG TGGCACCTTC 7381 AGTGGAGGGC AAGCTCCACG TAGAAACCTC CACTGGTGCC GGCCCAACCC TATCTGGTTG 7441 ATTTGTTGTT CTGGTCGCGG CAAAGTCAAA TTACCCCGCC ATGTCCGCCG CATCCATTGA 7501 TAATGTTCAC GTGCTAGCAA ACAACGCGTC GTCGCCGACA TCGGCAGATA GAGATACGTC 7561 GACTGGCGAC GCCGACGATC TTTAAAATAT ATACACTACA CTATATGGCA TACATGTGTG 7621 TAGGAATACG TCTACGGCGA CGTCTTTCGC TGGCATTTGT GCAAATACTA CAATATAATA 7681 TTATGTTCCA ACGTGGGCGG AGCGCTCTAC ACGCCACGGA TGCGTGTTAG GTGCTCCGTC 7741 GGTGCTCCAA CAAAGACGTT GGATACTTTG TATCAGTTAC AGGCGGCGTG ATAAGTGCGC 7801 TTTCGGCACA ATTAGCCAGA CGTTTTAATT TGGGAATGCC AAGGTCGTTT GTAGGTCTGT 7861 ACTTAGCACT GCTGTTCGTA GGATCCCGAT CGCCAAATCG GCGGATCTGG CCGCCCATAT 7921 ATATAAATAG CGATGGAAAG TTCTTGCCCA ATTGCGCAAG TGAAACTGAC CTACCTAACC 7981 CAGGCCATCT CGTGTACGAT GACGCAGTCC GTCCGTACTT AAGTCTTCTG CTCCGTCTGC 8041 TCTCTGTCTG CGGAATCGGC CAGCCAGTCA GCCGATCGAG AGCACAGTCA AATGTGTCTA 8101 ACCCTCCCCT CGCAACAAAG ATACTACATA TTCATACGCC CCATGGACCG GTCGTATCCA 8161 TATGTGATTC ATTCATAAGC CGGGTGCCCT CGAAACGCGT GAGGCACTTG TGAAATGGCC 8221 TCTCTTATCA GGCGGTTAGT TCCCGAATCG ATTTCGATGG CGAGCCGTGG AAATTCACGG 8281 AAGAGCAGCC TTGCTGGCCC GCGTTCCTAT CAGCAGCACT CGCCGCATAA TTGAATAATC 8341 TGAATCTGCC GAGCGAAGAG CGCGAAACAA TAAAAATATC AGATACGCTG CCCGACCGCC 8401 GCCAGTTACA GAACAAATTC GCTGCGAACA CAACGTGGGC GCATCTCGCA GGTGCCAAAA 8461 ACGAGGTAGA AAGACAAAGA CAAGCAAATG TGCGGGGGGT TTTTGAAAGC CACCTATATA 8521 GAGATCGGTT TATAGCCACA TAAATATGTA CATATATCCG TCGGGTATTT TGCTTAATTT 8581 TCGATGAAAC AATTTGTGAC ACAGAATAAA CTTGTATAAA AAAAACTAAT GCTTATCGCA 8641 TTCTTGGATA ACACTTTTCA AAATAAAATA CGGCATGTGT AAATAGTGTT GAAATGAGAA 8701 AATTGTTGGC TGTACTGACA TAATTGCCTA CATTTAACTA TATTTATTTA TGGTGAAGTG 8761 ATTAAGGATG CTTGTGAAAA TTGAATTAAT TCTGGTTAAG TGTCAAAAAC TACTGTTTGC 8821 ACAAAAAATA AGAATGCTC //