BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060839 AY060839|AY060839 Drosophila melanogaster GM02002 full insert cDNA. (2029 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8776-RD feature: mRNA loc=2R:complement(7724295..7725098,77251... 379 e-104 >CG8776-RD feature: mRNA loc=2R:complement(7724295..7725098,7725170..7725334, 7725391..7725613,7725686..7725909,7772321..7772514, 7772566..7772642);ID=FBan0008776;gene_id=FBgn0033764;gene _sym=CG8776;sym=CG8776;scaffold=AE003821;len=1687 Length = 1687 Score = 379 bits (191), Expect = e-104 Identities = 194/195 (99%) Strand = Plus / Minus Query: 1055 caattttgggctccgttcatatcttatgtaaatgaatcgagagcgataaattatatttag 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 caattttgggctccgttcatatcttatgtaaatgaatcgagagcgataaattatatttag 213 Query: 1115 gattttgttatctaaggcgacatgggtgcattgctcaaaaacatgtaatttaagtgcaca 1174 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 212 gattttgttatctaaggcgacatgggtgcattgctcaaaaacatgtaatttaagtacaca 153 Query: 1175 ctacatgagtcagtcacttgagatcgttccccgcctcctaaaatagtcccttagtgggag 1234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 ctacatgagtcagtcacttgagatcgttccccgcctcctaaaatagtcccttagtgggag 93 Query: 1235 accacagataaggtc 1249 ||||||||||||||| Sbjct: 92 accacagataaggtc 78 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 41,791 Number of Sequences: 18737 Number of extensions: 41791 Number of successful extensions: 864 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 862 Number of HSP's gapped (non-prelim): 2 length of query: 2029 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2011 effective length of database: 40,933,732 effective search space: 82317735052 effective search space used: 82317735052 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA246705 AA246705|DMAA46705 LD05623.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD05623 5, mRNA sequence. (505 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9686 Number of Sequences: 18737 Number of extensions: 9686 Number of successful extensions: 166 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166 Number of HSP's gapped (non-prelim): 0 length of query: 505 length of database: 41,270,998 effective HSP length: 17 effective length of query: 488 effective length of database: 40,952,469 effective search space: 19984804872 effective search space used: 19984804872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA246748 AA246748|DMAA46748 LD05680.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD05680 5 similar to CG8728: FBan0008728 GO:[endopeptidase (GO:0004175)] located on: 2R 43F6-43F6;: 08/13/2002, mRNA sequence. (518 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8728-RA feature: mRNA loc=2R:complement(2997758..2998044,29981... 1027 0.0 >CG8728-RA feature: mRNA loc=2R:complement(2997758..2998044,2998105..2998609, 2998663..2998803,2998860..2999276,2999338..2999716, 2999801..3000070);ID=FBan0008728;gene_id=FBgn0033235;gene _sym=CG8728;sym=CG8728;scaffold=AE003839;len=1999 Length = 1999 Score = 1027 bits (518), Expect = 0.0 Identities = 518/518 (100%) Strand = Plus / Minus Query: 1 ttttgggaattttggtttttagccaatttaaacttaacacggttgcccttcgcacaatat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1994 ttttgggaattttggtttttagccaatttaaacttaacacggttgcccttcgcacaatat 1935 Query: 61 tgtaaacaaagcgaaatgatatccaatggaggcggtctcacacccagcgctatttgaaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1934 tgtaaacaaagcgaaatgatatccaatggaggcggtctcacacccagcgctatttgaaca 1875 Query: 121 aggaaagcctacgtcccagcccggtacgtcctgaaccactgaccgcgttggtgatgtggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1874 aggaaagcctacgtcccagcccggtacgtcctgaaccactgaccgcgttggtgatgtggc 1815 Query: 181 tcatctcgggaagattgtggatgtcgccgcgggcggccacagaaggcggcgagctcagga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1814 tcatctcgggaagattgtggatgtcgccgcgggcggccacagaaggcggcgagctcagga 1755 Query: 241 gacgttgagcaacgcgttggatatcggcggcagttacactttcaatttccttgataaaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1754 gacgttgagcaacgcgttggatatcggcggcagttacactttcaatttccttgataaaat 1695 Query: 301 gctgcggtcgttttcgctgccccgtcaccagcacttggcggcccacgtcctcgaacacaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1694 gctgcggtcgttttcgctgccccgtcaccagcacttggcggcccacgtcctcgaacacaa 1635 Query: 361 cgggtctcgactccaggttcattagtaacatggactgaagctggatcttcgagcgcatta 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1634 cgggtctcgactccaggttcattagtaacatggactgaagctggatcttcgagcgcatta 1575 Query: 421 gctcttcacggcctggctctgcggccatgcccatcatctcgcgggtcaggacctcgacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1574 gctcttcacggcctggctctgcggccatgcccatcatctcgcgggtcaggacctcgacca 1515 Query: 481 tgtcgttcatgtgctgtggcggtgcgctaccgtgaaca 518 |||||||||||||||||||||||||||||||||||||| Sbjct: 1514 tgtcgttcatgtgctgtggcggtgcgctaccgtgaaca 1477 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,312 Number of Sequences: 18737 Number of extensions: 11312 Number of successful extensions: 247 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 246 Number of HSP's gapped (non-prelim): 1 length of query: 518 length of database: 41,270,998 effective HSP length: 17 effective length of query: 501 effective length of database: 40,952,469 effective search space: 20517186969 effective search space used: 20517186969 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA264147 AA264147|DMAA64147 LD07701.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD07701 5, mRNA sequence. (658 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,303 Number of Sequences: 18737 Number of extensions: 12303 Number of successful extensions: 266 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 266 Number of HSP's gapped (non-prelim): 0 length of query: 658 length of database: 41,270,998 effective HSP length: 17 effective length of query: 641 effective length of database: 40,952,469 effective search space: 26250532629 effective search space used: 26250532629 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA264626 AA264626|DMAA64626 LD08233.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08233 5 similar to CG5346: FBan0005346 GO:[] located on: 3R 94B5-94B5;: 08/13/2002, mRNA sequence. (597 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5346-RA feature: mRNA loc=3R:complement(18336460..18336764,183... 1181 0.0 >CG5346-RA feature: mRNA loc=3R:complement(18336460..18336764,18336882..18337066, 18337413..18338168,18338412..18338527,18343166..18343461, 18344774..18345039);ID=FBan0005346;gene_id=FBgn0038981;ge ne_sym=CG5346;sym=CG5346;scaffold=AE003739;len=1924 Length = 1924 Score = 1181 bits (596), Expect = 0.0 Identities = 596/596 (100%) Strand = Plus / Minus Query: 2 tttacggtgtatgcatgtattgtatatagtatctcgatacatataaattaatgaaatgaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1922 tttacggtgtatgcatgtattgtatatagtatctcgatacatataaattaatgaaatgaa 1863 Query: 62 gcaattacaatcgtatggaataaaagtaaaggtaataataaaaaggttcaaaacatcatc 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1862 gcaattacaatcgtatggaataaaagtaaaggtaataataaaaaggttcaaaacatcatc 1803 Query: 122 atatgagttgctgcttttcattttccccatccgttcccacaacgaacttcatcccagctt 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1802 atatgagttgctgcttttcattttccccatccgttcccacaacgaacttcatcccagctt 1743 Query: 182 aggtagagatgcgatggatggctcgaccgactatggtctatggttgttactgcttatgag 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1742 aggtagagatgcgatggatggctcgaccgactatggtctatggttgttactgcttatgag 1683 Query: 242 tgattgttactgctatacgtatctctaaactttttctgtatcaactgataggcattgtag 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1682 tgattgttactgctatacgtatctctaaactttttctgtatcaactgataggcattgtag 1623 Query: 302 actctttctttcgccgccttgaaggacttcttgcgctgcttgagacacgccttgtcctgg 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1622 actctttctttcgccgccttgaaggacttcttgcgctgcttgagacacgccttgtcctgg 1563 Query: 362 acggcatctggattgggcagatcggtgggcgatatcgtggtgatgttgtccggatggcag 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 acggcatctggattgggcagatcggtgggcgatatcgtggtgatgttgtccggatggcag 1503 Query: 422 aagaacgctatcgagtggcggccacgagcccgaatagtttcctgctccggtattatcacg 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 aagaacgctatcgagtggcggccacgagcccgaatagtttcctgctccggtattatcacg 1443 Query: 482 cgatgttgcaatgccggatatcgtccctgtgtccagatatttaagatctcgccacagttg 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 cgatgttgcaatgccggatatcgtccctgtgtccagatatttaagatctcgccacagttg 1383 Query: 542 acgagtatggagccgggcaggtggcccacgcgattccacttttcgctgccgggcag 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 acgagtatggagccgggcaggtggcccacgcgattccacttttcgctgccgggcag 1327 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,625 Number of Sequences: 18737 Number of extensions: 13625 Number of successful extensions: 273 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 272 Number of HSP's gapped (non-prelim): 1 length of query: 597 length of database: 41,270,998 effective HSP length: 17 effective length of query: 580 effective length of database: 40,952,469 effective search space: 23752432020 effective search space used: 23752432020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA264951 AA264951|DMAA64951 LD08911.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08911 5 similar to CG9253: FBan0009253 GO:[ATP dependent RNA helicase (GO:0004004); RNA helicase (GO:0003724)] located on: 2L 39B1-39B2;: 08/13/2002, mRNA sequence. (813 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9253-RA feature: mRNA loc=2L:join(21112976..21113247,21113308.... 1546 0.0 >CG9253-RA feature: mRNA loc=2L:join(21112976..21113247,21113308..21113566, 21113756..21114895);ID=FBan0009253;gene_id=FBgn0032919;ge ne_sym=CG9253;sym=CG9253;scaffold=AE003669;len=1671 Length = 1671 Score = 1546 bits (780), Expect = 0.0 Identities = 800/804 (99%), Gaps = 2/804 (0%) Strand = Plus / Minus Query: 12 actttctatttaaaacttttattacattattcttagagtagcactaataaaaatcgagac 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1667 actttctatttaaaacttttattacattattcttagagtagcactaataaaaatcgagac 1608 Query: 72 tgatctgacctatctcttctgcttgcccttgctccaattctttttgccaaagctctttct 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1607 tgatctgacctatctcttctgcttgcccttgctccaattctttttgccaaagctctttct 1548 Query: 132 tccaccaccgccagtgccgcccatcggtttcatgcgtttgcgtgcgcccgtgaagttctc 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1547 tccaccaccgccagtgccgcccatcggtttcatgcgtttgcgtgcgcccgtgaagttctc 1488 Query: 192 cgaatcatcgtgggtgtccccgcccctcttgtgaccaccccttgtatcttccagatcctt 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1487 cgaatcatcgtgggtgtccccgcccctcttgtgaccaccccttgtatcttccagatcctt 1428 Query: 252 cagctccagttttgcagtgcgctgtgcttcggctactcgttcttgaagggccatcacctc 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1427 cagctccagttttgcagtgcgctgtgcttcggctactcgttcttgaagggccatcacctc 1368 Query: 312 atcctcctcgcacttatacagtgtcagttgcttccccagtagatgttcgatgcgctgata 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1367 atcctcctcgcacttatacagtgtcagttgcttccccagtagatgttcgatgcgctgata 1308 Query: 372 caactcaatgtcgtactggctcacgagggttatggctttgccggagcgacctgctcttgc 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1307 caactcaatgtcgtactggctcacgagggttatggctttgccggagcgacctgctcttgc 1248 Query: 432 tgttcttcccacgcggtgaatgtagtctttgctgtgcgttggtatgtcgaaattaacgac 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1247 tgttcttcccacgcggtgaatgtagtctttgctgtgcgttggtatgtcgaaattaacgac 1188 Query: 492 gacatccacatgaggaatgtccaagccgcgggacgccacgtccgtcgaaatgagtattga 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1187 gacatccacatgaggaatgtccaagccgcgggacgccacgtccgtcgaaatgagtattga 1128 Query: 552 ccggtttttggccttgaatttgtttaaagcagctagtcgcttgttttgcgacatttgacc 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1127 ccggtttttggccttgaatttgtttaaagcagctagtcgcttgttttgcgacatttgacc 1068 Query: 612 gtgcagcgtaatagcagccaatcccaacgcacgaagcattaacgctgtcttaaccgtgtt 671 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 gtgcagcggaatagcagccaatcccaacgcacgaagcattaacgctgtcttaaccgtgtt 1008 Query: 672 gttgcaggtgctgcaaaatatcatgaaactgttgcctgccagctcattaaggatatg-ac 730 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1007 gttgcaggtgctgcaaaatatcatgaaactgttgcctgccagctcattaaggatatgaac 948 Query: 731 catatacacatccttgtatttgacagggat-aacaaatatgattgctgcagctgctcaac 789 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 947 caaatacacatccttgtatttgacagggataaacaaatatgattgctgcagctgctcaac 888 Query: 790 cgtctgatacttgttagacacctc 813 |||||||||||||||||||||||| Sbjct: 887 cgtctgatacttgttagacacctc 864 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,746 Number of Sequences: 18737 Number of extensions: 20746 Number of successful extensions: 604 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 601 Number of HSP's gapped (non-prelim): 1 length of query: 813 length of database: 41,270,998 effective HSP length: 17 effective length of query: 796 effective length of database: 40,952,469 effective search space: 32598165324 effective search space used: 32598165324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA392749 AA392749|DMAA92749 LD11885.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD11885 5, mRNA sequence. (651 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,005 Number of Sequences: 18737 Number of extensions: 18005 Number of successful extensions: 534 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 534 Number of HSP's gapped (non-prelim): 0 length of query: 651 length of database: 41,270,998 effective HSP length: 17 effective length of query: 634 effective length of database: 40,952,469 effective search space: 25963865346 effective search space used: 25963865346 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA439758 AA439758|DMAA39758 LD14406.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD14406 5, mRNA sequence. (561 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,405 Number of Sequences: 18737 Number of extensions: 10405 Number of successful extensions: 255 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 255 Number of HSP's gapped (non-prelim): 0 length of query: 561 length of database: 41,270,998 effective HSP length: 17 effective length of query: 544 effective length of database: 40,952,469 effective search space: 22278143136 effective search space used: 22278143136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA536227 AA536227|DMAA36227 LD16711.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD16711 5, mRNA sequence. (557 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,733 Number of Sequences: 18737 Number of extensions: 11733 Number of successful extensions: 245 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 245 Number of HSP's gapped (non-prelim): 0 length of query: 557 length of database: 41,270,998 effective HSP length: 17 effective length of query: 540 effective length of database: 40,952,469 effective search space: 22114333260 effective search space used: 22114333260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA540217 AA540217|DM1329066 LD19629.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD19629 5, mRNA sequence. (540 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,867 Number of Sequences: 18737 Number of extensions: 12867 Number of successful extensions: 303 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 303 Number of HSP's gapped (non-prelim): 0 length of query: 540 length of database: 41,270,998 effective HSP length: 17 effective length of query: 523 effective length of database: 40,952,469 effective search space: 21418141287 effective search space used: 21418141287 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA567174 AA567174|AA567174 GM01206.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01206 5, mRNA sequence. (616 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,020 Number of Sequences: 18737 Number of extensions: 11020 Number of successful extensions: 248 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 248 Number of HSP's gapped (non-prelim): 0 length of query: 616 length of database: 41,270,998 effective HSP length: 17 effective length of query: 599 effective length of database: 40,952,469 effective search space: 24530528931 effective search space used: 24530528931 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA567570 AA567570|AA567570 HL01468.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL01468 5, mRNA sequence. (716 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,275 Number of Sequences: 18737 Number of extensions: 14275 Number of successful extensions: 420 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 420 Number of HSP's gapped (non-prelim): 0 length of query: 716 length of database: 41,270,998 effective HSP length: 17 effective length of query: 699 effective length of database: 40,952,469 effective search space: 28625775831 effective search space used: 28625775831 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA568064 AA568064|AA568064 HL01242.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL01242 5prime similar to X05951: Drosophila melanogaster calmodulin gene exon 4 and intron III (partial), mRNA sequence. (385 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2591 Number of Sequences: 18737 Number of extensions: 2591 Number of successful extensions: 212 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 212 Number of HSP's gapped (non-prelim): 0 length of query: 385 length of database: 41,270,998 effective HSP length: 17 effective length of query: 368 effective length of database: 40,952,469 effective search space: 15070508592 effective search space used: 15070508592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA694681 AA694681|AA694681 GM01267.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01267 5 similar to mbf1: FBan0004143 GO:[] located on: 3L 73A7-73A7;: 08/13/2002, mRNA sequence. (654 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mbf1-RB feature: mRNA loc=3L:join(16523654..16523855,16524066..1... 597 e-170 mbf1-RA feature: mRNA loc=3L:join(16523575..16523631,16523732..1... 597 e-170 >mbf1-RB feature: mRNA loc=3L:join(16523654..16523855,16524066..16524226, 16524596..16525360);ID=FBan0004143;gene_id=FBgn0026208;ge ne_sym=mbf1;sym=CG4143;scaffold=AE003527;len=1128 Length = 1128 Score = 597 bits (301), Expect = e-170 Identities = 301/301 (100%) Strand = Plus / Plus Query: 208 tcactacctttgccgataaattaaccattgtaattacccacaacacatacagtcacacac 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 828 tcactacctttgccgataaattaaccattgtaattacccacaacacatacagtcacacac 887 Query: 268 gagatgcacacaagtcggaaacggaagcgagacggacgtgaaacgcaaaagactaatctg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 888 gagatgcacacaagtcggaaacggaagcgagacggacgtgaaacgcaaaagactaatctg 947 Query: 328 atattaacgcgctcatagcttggagtagtgttattcgttcattttggcattagagtatgt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 948 atattaacgcgctcatagcttggagtagtgttattcgttcattttggcattagagtatgt 1007 Query: 388 tttgaaacttaatctaagttatggaattaaaaacaagacataaaaagcatgtaaaacact 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1008 tttgaaacttaatctaagttatggaattaaaaacaagacataaaaagcatgtaaaacact 1067 Query: 448 ctaatttctttctttttgtacacccaatcagccgtacacaatatttacataaacgatcca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1068 ctaatttctttctttttgtacacccaatcagccgtacacaatatttacataaacgatcca 1127 Query: 508 t 508 | Sbjct: 1128 t 1128 Score = 418 bits (211), Expect = e-116 Identities = 211/211 (100%) Strand = Plus / Plus Query: 1 cagtggtgctccacacacggtcacctcaggacgcagcgcccggcaacagaaccatcaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 cagtggtgctccacacacggtcacctcaggacgcagcgcccggcaacagaaccatcaaca 599 Query: 61 cacggattctggaggctggagcactgtaagcggcagacgcaaataaagcattatcgggag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 cacggattctggaggctggagcactgtaagcggcagacgcaaataaagcattatcgggag 659 Query: 121 gctggagaaccaaatcaaatcgggtcatacagcagcagctgccgacgcagcaaacacaga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 gctggagaaccaaatcaaatcgggtcatacagcagcagctgccgacgcagcaaacacaga 719 Query: 181 agcatacaaaaccgaagatctaactaatcac 211 ||||||||||||||||||||||||||||||| Sbjct: 720 agcatacaaaaccgaagatctaactaatcac 750 >mbf1-RA feature: mRNA loc=3L:join(16523575..16523631,16523732..16523855, 16524066..16524226, 16524596..16525360);ID=FBan0004143;gene_id=FBgn0026208;ge ne_sym=mbf1;sym=CG4143;scaffold=AE003527;len=1107 Length = 1107 Score = 597 bits (301), Expect = e-170 Identities = 301/301 (100%) Strand = Plus / Plus Query: 208 tcactacctttgccgataaattaaccattgtaattacccacaacacatacagtcacacac 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 tcactacctttgccgataaattaaccattgtaattacccacaacacatacagtcacacac 866 Query: 268 gagatgcacacaagtcggaaacggaagcgagacggacgtgaaacgcaaaagactaatctg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 gagatgcacacaagtcggaaacggaagcgagacggacgtgaaacgcaaaagactaatctg 926 Query: 328 atattaacgcgctcatagcttggagtagtgttattcgttcattttggcattagagtatgt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 atattaacgcgctcatagcttggagtagtgttattcgttcattttggcattagagtatgt 986 Query: 388 tttgaaacttaatctaagttatggaattaaaaacaagacataaaaagcatgtaaaacact 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 tttgaaacttaatctaagttatggaattaaaaacaagacataaaaagcatgtaaaacact 1046 Query: 448 ctaatttctttctttttgtacacccaatcagccgtacacaatatttacataaacgatcca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 ctaatttctttctttttgtacacccaatcagccgtacacaatatttacataaacgatcca 1106 Query: 508 t 508 | Sbjct: 1107 t 1107 Score = 418 bits (211), Expect = e-116 Identities = 211/211 (100%) Strand = Plus / Plus Query: 1 cagtggtgctccacacacggtcacctcaggacgcagcgcccggcaacagaaccatcaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 519 cagtggtgctccacacacggtcacctcaggacgcagcgcccggcaacagaaccatcaaca 578 Query: 61 cacggattctggaggctggagcactgtaagcggcagacgcaaataaagcattatcgggag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 cacggattctggaggctggagcactgtaagcggcagacgcaaataaagcattatcgggag 638 Query: 121 gctggagaaccaaatcaaatcgggtcatacagcagcagctgccgacgcagcaaacacaga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 gctggagaaccaaatcaaatcgggtcatacagcagcagctgccgacgcagcaaacacaga 698 Query: 181 agcatacaaaaccgaagatctaactaatcac 211 ||||||||||||||||||||||||||||||| Sbjct: 699 agcatacaaaaccgaagatctaactaatcac 729 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,734 Number of Sequences: 18737 Number of extensions: 17734 Number of successful extensions: 389 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 385 Number of HSP's gapped (non-prelim): 4 length of query: 654 length of database: 41,270,998 effective HSP length: 17 effective length of query: 637 effective length of database: 40,952,469 effective search space: 26086722753 effective search space used: 26086722753 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA694743 AA694743|AA694743 GM01456.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01456 5, mRNA sequence. (570 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,672 Number of Sequences: 18737 Number of extensions: 12672 Number of successful extensions: 329 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 329 Number of HSP's gapped (non-prelim): 0 length of query: 570 length of database: 41,270,998 effective HSP length: 17 effective length of query: 553 effective length of database: 40,952,469 effective search space: 22646715357 effective search space used: 22646715357 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA695498 AA695498|AA695498 GM02923.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02923 5, mRNA sequence. (692 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,913 Number of Sequences: 18737 Number of extensions: 12913 Number of successful extensions: 309 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 309 Number of HSP's gapped (non-prelim): 0 length of query: 692 length of database: 41,270,998 effective HSP length: 17 effective length of query: 675 effective length of database: 40,952,469 effective search space: 27642916575 effective search space used: 27642916575 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA695540 AA695540|AA695540 GM03003.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03003 5, mRNA sequence. (652 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,725 Number of Sequences: 18737 Number of extensions: 13725 Number of successful extensions: 479 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 479 Number of HSP's gapped (non-prelim): 0 length of query: 652 length of database: 41,270,998 effective HSP length: 17 effective length of query: 635 effective length of database: 40,952,469 effective search space: 26004817815 effective search space used: 26004817815 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA695781 AA695781|AA695781 GM04458.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04458 5, mRNA sequence. (665 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,515 Number of Sequences: 18737 Number of extensions: 12515 Number of successful extensions: 257 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 257 Number of HSP's gapped (non-prelim): 0 length of query: 665 length of database: 41,270,998 effective HSP length: 17 effective length of query: 648 effective length of database: 40,952,469 effective search space: 26537199912 effective search space used: 26537199912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA695923 AA695923|AA695923 GM04775.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04775 5, mRNA sequence. (799 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,401 Number of Sequences: 18737 Number of extensions: 13401 Number of successful extensions: 287 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 287 Number of HSP's gapped (non-prelim): 0 length of query: 799 length of database: 41,270,998 effective HSP length: 17 effective length of query: 782 effective length of database: 40,952,469 effective search space: 32024830758 effective search space used: 32024830758 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA696022 AA696022|AA696022 GM04921.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04921 5, mRNA sequence. (678 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,752 Number of Sequences: 18737 Number of extensions: 15752 Number of successful extensions: 596 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 596 Number of HSP's gapped (non-prelim): 0 length of query: 678 length of database: 41,270,998 effective HSP length: 17 effective length of query: 661 effective length of database: 40,952,469 effective search space: 27069582009 effective search space used: 27069582009 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA696397 AA696397|AA696397 GM07606.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07606 5, mRNA sequence. (626 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,099 Number of Sequences: 18737 Number of extensions: 12099 Number of successful extensions: 260 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 260 Number of HSP's gapped (non-prelim): 0 length of query: 626 length of database: 41,270,998 effective HSP length: 17 effective length of query: 609 effective length of database: 40,952,469 effective search space: 24940053621 effective search space used: 24940053621 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA696428 AA696428|AA696428 GM07660.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07660 5, mRNA sequence. (673 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,354 Number of Sequences: 18737 Number of extensions: 17354 Number of successful extensions: 558 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 558 Number of HSP's gapped (non-prelim): 0 length of query: 673 length of database: 41,270,998 effective HSP length: 17 effective length of query: 656 effective length of database: 40,952,469 effective search space: 26864819664 effective search space used: 26864819664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA696444 AA696444|AA696444 GM07702.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07702 5, mRNA sequence. (714 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,758 Number of Sequences: 18737 Number of extensions: 24758 Number of successful extensions: 790 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 790 Number of HSP's gapped (non-prelim): 0 length of query: 714 length of database: 41,270,998 effective HSP length: 17 effective length of query: 697 effective length of database: 40,952,469 effective search space: 28543870893 effective search space used: 28543870893 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA696903 AA696903|AA696903 GM08676.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM08676 5, mRNA sequence. (575 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,221 Number of Sequences: 18737 Number of extensions: 16221 Number of successful extensions: 552 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 552 Number of HSP's gapped (non-prelim): 0 length of query: 575 length of database: 41,270,998 effective HSP length: 17 effective length of query: 558 effective length of database: 40,952,469 effective search space: 22851477702 effective search space used: 22851477702 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA696973 AA696973|AA696973 GM08821.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM08821 5, mRNA sequence. (678 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,701 Number of Sequences: 18737 Number of extensions: 15701 Number of successful extensions: 358 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 358 Number of HSP's gapped (non-prelim): 0 length of query: 678 length of database: 41,270,998 effective HSP length: 17 effective length of query: 661 effective length of database: 40,952,469 effective search space: 27069582009 effective search space used: 27069582009 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA697212 AA697212|AA697212 GM09444.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM09444 5, mRNA sequence. (650 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9444 Number of Sequences: 18737 Number of extensions: 9444 Number of successful extensions: 199 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 199 Number of HSP's gapped (non-prelim): 0 length of query: 650 length of database: 41,270,998 effective HSP length: 17 effective length of query: 633 effective length of database: 40,952,469 effective search space: 25922912877 effective search space used: 25922912877 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA697945 AA697945|AA697945 HL03512.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL03512 5, mRNA sequence. (634 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,759 Number of Sequences: 18737 Number of extensions: 16759 Number of successful extensions: 1019 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1019 Number of HSP's gapped (non-prelim): 0 length of query: 634 length of database: 41,270,998 effective HSP length: 17 effective length of query: 617 effective length of database: 40,952,469 effective search space: 25267673373 effective search space used: 25267673373 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA697964 AA697964|AA697964 HL03538.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL03538 5, mRNA sequence. (519 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4658-RC feature: mRNA loc=2L:join(9949696..9949738,9949838..99... 692 0.0 CG4658-RB feature: mRNA loc=2L:join(9949696..9949738,9949812..99... 692 0.0 CG4658-RA feature: mRNA loc=2L:join(9949696..9950309,9950369..99... 692 0.0 >CG4658-RC feature: mRNA loc=2L:join(9949696..9949738,9949838..9950309, 9950369..9951294,9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2234 Length = 2234 Score = 692 bits (349), Expect = 0.0 Identities = 349/349 (100%) Strand = Plus / Minus Query: 1 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 1901 Query: 61 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1900 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 1841 Query: 121 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 1781 Query: 181 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1780 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 1721 Query: 241 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1720 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 1661 Query: 301 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 349 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1660 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 1612 >CG4658-RB feature: mRNA loc=2L:join(9949696..9949738,9949812..9950309, 9950369..9951294,9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2260 Length = 2260 Score = 692 bits (349), Expect = 0.0 Identities = 349/349 (100%) Strand = Plus / Minus Query: 1 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1986 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 1927 Query: 61 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1926 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 1867 Query: 121 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1866 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 1807 Query: 181 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1806 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 1747 Query: 241 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1746 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 1687 Query: 301 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 349 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 1638 >CG4658-RA feature: mRNA loc=2L:join(9949696..9950309,9950369..9951294, 9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2333 Length = 2333 Score = 692 bits (349), Expect = 0.0 Identities = 349/349 (100%) Strand = Plus / Minus Query: 1 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 2000 Query: 61 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1999 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 1940 Query: 121 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1939 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 1880 Query: 181 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1879 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 1820 Query: 241 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1819 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 1760 Query: 301 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 349 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1759 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 1711 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,925 Number of Sequences: 18737 Number of extensions: 13925 Number of successful extensions: 287 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 284 Number of HSP's gapped (non-prelim): 3 length of query: 519 length of database: 41,270,998 effective HSP length: 17 effective length of query: 502 effective length of database: 40,952,469 effective search space: 20558139438 effective search space used: 20558139438 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA698113 AA698113|AA698113 HL03793.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL03793 5, mRNA sequence. (617 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,101 Number of Sequences: 18737 Number of extensions: 13101 Number of successful extensions: 259 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 259 Number of HSP's gapped (non-prelim): 0 length of query: 617 length of database: 41,270,998 effective HSP length: 17 effective length of query: 600 effective length of database: 40,952,469 effective search space: 24571481400 effective search space used: 24571481400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA698595 AA698595|AA698595 HL04994.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL04994 5, mRNA sequence. (635 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,723 Number of Sequences: 18737 Number of extensions: 11723 Number of successful extensions: 241 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 241 Number of HSP's gapped (non-prelim): 0 length of query: 635 length of database: 41,270,998 effective HSP length: 17 effective length of query: 618 effective length of database: 40,952,469 effective search space: 25308625842 effective search space used: 25308625842 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA698837 AA698837|AA698837 HL05775.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL05775 5 similar to norpA: FBan0003620 GO:[cytstolic calcium ion concentration elevation (GO:0007204); phosphatidylinositol-4,5 bisphosphate hydrolysis (GO:0007203); 1-phosphatidylinositol-4,5-biphosphate phosphodiesterase (GO:0 [Description Truncated]: 08/13/2002, mRNA sequence. (749 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,299 Number of Sequences: 18737 Number of extensions: 20299 Number of successful extensions: 999 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 999 Number of HSP's gapped (non-prelim): 0 length of query: 749 length of database: 41,270,998 effective HSP length: 17 effective length of query: 732 effective length of database: 40,952,469 effective search space: 29977207308 effective search space used: 29977207308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA699046 AA699046|AA699046 HL07357.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL07357 5, mRNA sequence. (680 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,499 Number of Sequences: 18737 Number of extensions: 19499 Number of successful extensions: 872 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 872 Number of HSP's gapped (non-prelim): 0 length of query: 680 length of database: 41,270,998 effective HSP length: 17 effective length of query: 663 effective length of database: 40,952,469 effective search space: 27151486947 effective search space used: 27151486947 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA735356 AA735356|AA735356 LD21171.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21171 5 similar to DM_YOYO: emb|DM_YOYO, mRNA sequence. (644 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,327 Number of Sequences: 18737 Number of extensions: 11327 Number of successful extensions: 247 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247 Number of HSP's gapped (non-prelim): 0 length of query: 644 length of database: 41,270,998 effective HSP length: 17 effective length of query: 627 effective length of database: 40,952,469 effective search space: 25677198063 effective search space used: 25677198063 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA735693 AA735693|AA735693 GM09534.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM09534 5, mRNA sequence. (571 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,375 Number of Sequences: 18737 Number of extensions: 11375 Number of successful extensions: 250 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 250 Number of HSP's gapped (non-prelim): 0 length of query: 571 length of database: 41,270,998 effective HSP length: 17 effective length of query: 554 effective length of database: 40,952,469 effective search space: 22687667826 effective search space used: 22687667826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA735701 AA735701|AA735701 GM09570.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM09570 5, mRNA sequence. (635 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR30066-RA feature: ncRNA loc=2R:complement(9353318..9354071,935... 1229 0.0 >CR30066-RA feature: ncRNA loc=2R:complement(9353318..9354071, 9354108..9354651);ID=FBan0030066;gene_id=FBgn0050066;gene _sym=CR30066;sym=CR30066;type=ncRNA;scaffold=AE003815;len =1298 Length = 1298 Score = 1229 bits (620), Expect = 0.0 Identities = 633/636 (99%), Gaps = 1/636 (0%) Strand = Plus / Minus Query: 1 atacatacgtagctatatagcacgcttccagacttctacgattctccgtttctcggcagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1298 atacatacgtagctatatagcacgcttccagacttctacgattctccgtttctcggcagc 1239 Query: 61 cgcactttgtgagtcgtttgtgtaatctgcatcaaaacggcggaaaaacatctgcttcag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1238 cgcactttgtgagtcgtttgtgtaatctgcatcaaaacggcggaaaaacatctgcttcag 1179 Query: 121 cacgtttttccaagttgctagggaaacaaacccaatagtttcgaatgcaaaacatcaaac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1178 cacgtttttccaagttgctagggaaacaaacccaatagtttcgaatgcaaaacatcaaac 1119 Query: 181 aaaaatcaacgaaaattccaagtgcgccagtgaagtgcgatgaattcgaaaccacaatta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1118 aaaaatcaacgaaaattccaagtgcgccagtgaagtgcgatgaattcgaaaccacaatta 1059 Query: 241 tgaaatgtagattgtagcaaagtgatttgatttcatttgatttgtgtaatgcaatagccg 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1058 tgaaatgtagattgtagcaaagtgatttgatttcatttgatttgtgtaatgcaatagtcg 999 Query: 301 acggcggttaacaatagcaatcactaataaattcattaggctaa-gccaagattaaatta 359 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 998 acggcggttaacaatagcaatcactaataaattcattaggctaatgccaagattaaatta 939 Query: 360 aatcagcttcaacaggcttaattaaaacgaaactttccaatttcaaagtacactcaattg 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 938 aatcagcttcaacaggcttaattaaaacgaaactttccaatttcaaagtacactcaattg 879 Query: 420 agtgtgaagaggcgaaaagagagcgctgtttataataataatagaagcacagacacaatt 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 878 agtgtgaagaggcgaaaagagagcgctgtttataataataatagaagcacagacacaatt 819 Query: 480 acgaaaaaagtattatcaatgtacgaaaatatcagtacgtctaaccgtgacgcgaaaacc 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 818 acgaaaaaagtattatcaatgtacgaaaatatcagtacgtctaaccgtgacgcgaaaacc 759 Query: 540 catacccatatacccatatacccatgcccatgcccatgcttgtatccaaactgaaactga 599 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 758 catacccatatacccatatacccatgcccatgcccatgctcgtatccaaactgaaactga 699 Query: 600 aactgaattggaaaccaacgtaaccgcgagcacgcg 635 |||||||||||||||||||||||||||||||||||| Sbjct: 698 aactgaattggaaaccaacgtaaccgcgagcacgcg 663 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,613 Number of Sequences: 18737 Number of extensions: 15613 Number of successful extensions: 574 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 567 Number of HSP's gapped (non-prelim): 2 length of query: 635 length of database: 41,270,998 effective HSP length: 17 effective length of query: 618 effective length of database: 40,952,469 effective search space: 25308625842 effective search space used: 25308625842 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA735764 AA735764|AA735764 GM09783.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM09783 5, mRNA sequence. (699 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,958 Number of Sequences: 18737 Number of extensions: 17958 Number of successful extensions: 326 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 326 Number of HSP's gapped (non-prelim): 0 length of query: 699 length of database: 41,270,998 effective HSP length: 17 effective length of query: 682 effective length of database: 40,952,469 effective search space: 27929583858 effective search space used: 27929583858 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA736049 AA736049|AA736049 GM10877.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM10877 5, mRNA sequence. (714 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,649 Number of Sequences: 18737 Number of extensions: 13649 Number of successful extensions: 260 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 260 Number of HSP's gapped (non-prelim): 0 length of query: 714 length of database: 41,270,998 effective HSP length: 17 effective length of query: 697 effective length of database: 40,952,469 effective search space: 28543870893 effective search space used: 28543870893 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA736172 AA736172|AA736172 HL08112.5prime HL Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone HL08112 5, mRNA sequence. (613 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,771 Number of Sequences: 18737 Number of extensions: 11771 Number of successful extensions: 218 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 218 Number of HSP's gapped (non-prelim): 0 length of query: 613 length of database: 41,270,998 effective HSP length: 17 effective length of query: 596 effective length of database: 40,952,469 effective search space: 24407671524 effective search space used: 24407671524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA801623 AA801623|AA801623 GM02002.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02002 5, mRNA sequence. (555 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,152 Number of Sequences: 18737 Number of extensions: 13152 Number of successful extensions: 316 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 316 Number of HSP's gapped (non-prelim): 0 length of query: 555 length of database: 41,270,998 effective HSP length: 17 effective length of query: 538 effective length of database: 40,952,469 effective search space: 22032428322 effective search space used: 22032428322 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA801661 AA801661|AA801661 GM03205.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03205 5, mRNA sequence. (612 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,430 Number of Sequences: 18737 Number of extensions: 14430 Number of successful extensions: 363 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 363 Number of HSP's gapped (non-prelim): 0 length of query: 612 length of database: 41,270,998 effective HSP length: 17 effective length of query: 595 effective length of database: 40,952,469 effective search space: 24366719055 effective search space used: 24366719055 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA801974 AA801974|AA801974 GM03661.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03661 5, mRNA sequence. (689 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,957 Number of Sequences: 18737 Number of extensions: 13957 Number of successful extensions: 372 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 372 Number of HSP's gapped (non-prelim): 0 length of query: 689 length of database: 41,270,998 effective HSP length: 17 effective length of query: 672 effective length of database: 40,952,469 effective search space: 27520059168 effective search space used: 27520059168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA802139 AA802139|AA802139 GM03914.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03914 5, mRNA sequence. (674 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,356 Number of Sequences: 18737 Number of extensions: 15356 Number of successful extensions: 394 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 394 Number of HSP's gapped (non-prelim): 0 length of query: 674 length of database: 41,270,998 effective HSP length: 17 effective length of query: 657 effective length of database: 40,952,469 effective search space: 26905772133 effective search space used: 26905772133 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA802181 AA802181|AA802181 GM03978.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03978 5, mRNA sequence. (608 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,083 Number of Sequences: 18737 Number of extensions: 10083 Number of successful extensions: 216 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 216 Number of HSP's gapped (non-prelim): 0 length of query: 608 length of database: 41,270,998 effective HSP length: 17 effective length of query: 591 effective length of database: 40,952,469 effective search space: 24202909179 effective search space used: 24202909179 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA802555 AA802555|AA802555 GM05817.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM05817 5, mRNA sequence. (706 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33184-RD feature: mRNA loc=2R:join(9018913..9019159,9019631..9... 1352 0.0 CG33184-RA feature: mRNA loc=2R:join(9018913..9019159,9019631..9... 1352 0.0 CG33184-RC feature: mRNA loc=2R:join(9019212..9019358,9019631..9... 1057 0.0 CG33184-RB feature: mRNA loc=2R:join(9019241..9019575,9019631..9... 1055 0.0 >CG33184-RD feature: mRNA loc=2R:join(9018913..9019159,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=830 Length = 830 Score = 1352 bits (682), Expect = 0.0 Identities = 691/694 (99%) Strand = Plus / Plus Query: 13 cataaataatgtctgtgcctttcattggcgcattgcggcgttccggcggcattgtgtccg 72 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 94 cataaataatgtctgtgcctttcagtggcgcattgcggcgttccggcggcattgtgtccg 153 Query: 73 ccattggcaagcagctgaagagcgtgaatttgaagggcgtcaagcggataaccgtgcagt 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 ccattggcaagcagctgaagagcgtgaatttgaagggcgtcaagcggataaccgtgcagt 213 Query: 133 tcgatccattcgcggaaaatgtcaagtccacacgggaattcctcttcctgctctccacac 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 tcgatccattcgcggaaaatgtcaagtccacacgggaattcctcttcctgctctccacac 273 Query: 193 ccaaagtggcagctacgaatcccaagtgcgtggtcaagccagaaatcgtctgcgatcgcc 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 ccaaagtggcagctacgaatcccaagtgcgtggtcaagccagaaatcgtctgcgatcgcc 333 Query: 253 agccggccaacatcaagtttgccctgattgattcagcgcaagaacaagcccaagtcaagg 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 agccggccaacatcaagtttgccctgattgattcagcgcaagaacaagcccaagtcaagg 393 Query: 313 agatccgcttcaacagcgataacctaaacacactagagctgctgcagctgtgcaacaagc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 agatccgcttcaacagcgataacctaaacacactagagctgctgcagctgtgcaacaagc 453 Query: 373 acgtgtccagcttggcaccgcgcgaggagatcaccaacaaggtcctgaccaaggcggaga 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 acgtgtccagcttggcaccgcgcgaggagatcaccaacaaggtcctgaccaaggcggaga 513 Query: 433 aacagaaactagcaggaggcgccggcggcggaaagaaggcaaccaaggagaagtaaccat 492 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 514 aacagaaactagcaggaggcgccggcggcggaaagaaggcaaccaagaagaagtaaccat 573 Query: 493 caggatggtgaggaagcacaaaggaacactggcggtgatcgagaagatctaccaggatat 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 caggatggtgaggaagcacaaaggaacactggcggtgatcgagaagatctaccaggatat 633 Query: 553 acccgcattctccgacatcttcaccgaggagagcttctacatgttcgccttctgtttcgt 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 acccgcattctccgacatcttcaccgaggagagcttctacatgttcgccttctgtttcgt 693 Query: 613 gtgcgccaccattctggtggccttcattctctcccggttcatcaccatcaagcccgtcga 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 gtgcgccaccattctggtggccttcattctctcccggttcatcaccatcaagcccgtcga 753 Query: 673 tttctaagccaattgtattgttcaatttcgcaca 706 ||||||||||||||||||||||||||| |||||| Sbjct: 754 tttctaagccaattgtattgttcaattccgcaca 787 >CG33184-RA feature: mRNA loc=2R:join(9018913..9019159,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=830 Length = 830 Score = 1352 bits (682), Expect = 0.0 Identities = 691/694 (99%) Strand = Plus / Plus Query: 13 cataaataatgtctgtgcctttcattggcgcattgcggcgttccggcggcattgtgtccg 72 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 94 cataaataatgtctgtgcctttcagtggcgcattgcggcgttccggcggcattgtgtccg 153 Query: 73 ccattggcaagcagctgaagagcgtgaatttgaagggcgtcaagcggataaccgtgcagt 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 ccattggcaagcagctgaagagcgtgaatttgaagggcgtcaagcggataaccgtgcagt 213 Query: 133 tcgatccattcgcggaaaatgtcaagtccacacgggaattcctcttcctgctctccacac 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 tcgatccattcgcggaaaatgtcaagtccacacgggaattcctcttcctgctctccacac 273 Query: 193 ccaaagtggcagctacgaatcccaagtgcgtggtcaagccagaaatcgtctgcgatcgcc 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 ccaaagtggcagctacgaatcccaagtgcgtggtcaagccagaaatcgtctgcgatcgcc 333 Query: 253 agccggccaacatcaagtttgccctgattgattcagcgcaagaacaagcccaagtcaagg 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 agccggccaacatcaagtttgccctgattgattcagcgcaagaacaagcccaagtcaagg 393 Query: 313 agatccgcttcaacagcgataacctaaacacactagagctgctgcagctgtgcaacaagc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 agatccgcttcaacagcgataacctaaacacactagagctgctgcagctgtgcaacaagc 453 Query: 373 acgtgtccagcttggcaccgcgcgaggagatcaccaacaaggtcctgaccaaggcggaga 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 acgtgtccagcttggcaccgcgcgaggagatcaccaacaaggtcctgaccaaggcggaga 513 Query: 433 aacagaaactagcaggaggcgccggcggcggaaagaaggcaaccaaggagaagtaaccat 492 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 514 aacagaaactagcaggaggcgccggcggcggaaagaaggcaaccaagaagaagtaaccat 573 Query: 493 caggatggtgaggaagcacaaaggaacactggcggtgatcgagaagatctaccaggatat 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 caggatggtgaggaagcacaaaggaacactggcggtgatcgagaagatctaccaggatat 633 Query: 553 acccgcattctccgacatcttcaccgaggagagcttctacatgttcgccttctgtttcgt 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 acccgcattctccgacatcttcaccgaggagagcttctacatgttcgccttctgtttcgt 693 Query: 613 gtgcgccaccattctggtggccttcattctctcccggttcatcaccatcaagcccgtcga 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 gtgcgccaccattctggtggccttcattctctcccggttcatcaccatcaagcccgtcga 753 Query: 673 tttctaagccaattgtattgttcaatttcgcaca 706 ||||||||||||||||||||||||||| |||||| Sbjct: 754 tttctaagccaattgtattgttcaattccgcaca 787 >CG33184-RC feature: mRNA loc=2R:join(9019212..9019358,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=730 Length = 730 Score = 1057 bits (533), Expect = 0.0 Identities = 539/541 (99%) Strand = Plus / Plus Query: 166 gggaattcctcttcctgctctccacacccaaagtggcagctacgaatcccaagtgcgtgg 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 gggaattcctcttcctgctctccacacccaaagtggcagctacgaatcccaagtgcgtgg 206 Query: 226 tcaagccagaaatcgtctgcgatcgccagccggccaacatcaagtttgccctgattgatt 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 tcaagccagaaatcgtctgcgatcgccagccggccaacatcaagtttgccctgattgatt 266 Query: 286 cagcgcaagaacaagcccaagtcaaggagatccgcttcaacagcgataacctaaacacac 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 cagcgcaagaacaagcccaagtcaaggagatccgcttcaacagcgataacctaaacacac 326 Query: 346 tagagctgctgcagctgtgcaacaagcacgtgtccagcttggcaccgcgcgaggagatca 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 tagagctgctgcagctgtgcaacaagcacgtgtccagcttggcaccgcgcgaggagatca 386 Query: 406 ccaacaaggtcctgaccaaggcggagaaacagaaactagcaggaggcgccggcggcggaa 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 ccaacaaggtcctgaccaaggcggagaaacagaaactagcaggaggcgccggcggcggaa 446 Query: 466 agaaggcaaccaaggagaagtaaccatcaggatggtgaggaagcacaaaggaacactggc 525 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 agaaggcaaccaagaagaagtaaccatcaggatggtgaggaagcacaaaggaacactggc 506 Query: 526 ggtgatcgagaagatctaccaggatatacccgcattctccgacatcttcaccgaggagag 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 ggtgatcgagaagatctaccaggatatacccgcattctccgacatcttcaccgaggagag 566 Query: 586 cttctacatgttcgccttctgtttcgtgtgcgccaccattctggtggccttcattctctc 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 cttctacatgttcgccttctgtttcgtgtgcgccaccattctggtggccttcattctctc 626 Query: 646 ccggttcatcaccatcaagcccgtcgatttctaagccaattgtattgttcaatttcgcac 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 627 ccggttcatcaccatcaagcccgtcgatttctaagccaattgtattgttcaattccgcac 686 Query: 706 a 706 | Sbjct: 687 a 687 >CG33184-RB feature: mRNA loc=2R:join(9019241..9019575,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=918 Length = 918 Score = 1055 bits (532), Expect = 0.0 Identities = 538/540 (99%) Strand = Plus / Plus Query: 167 ggaattcctcttcctgctctccacacccaaagtggcagctacgaatcccaagtgcgtggt 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 336 ggaattcctcttcctgctctccacacccaaagtggcagctacgaatcccaagtgcgtggt 395 Query: 227 caagccagaaatcgtctgcgatcgccagccggccaacatcaagtttgccctgattgattc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 396 caagccagaaatcgtctgcgatcgccagccggccaacatcaagtttgccctgattgattc 455 Query: 287 agcgcaagaacaagcccaagtcaaggagatccgcttcaacagcgataacctaaacacact 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 456 agcgcaagaacaagcccaagtcaaggagatccgcttcaacagcgataacctaaacacact 515 Query: 347 agagctgctgcagctgtgcaacaagcacgtgtccagcttggcaccgcgcgaggagatcac 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 516 agagctgctgcagctgtgcaacaagcacgtgtccagcttggcaccgcgcgaggagatcac 575 Query: 407 caacaaggtcctgaccaaggcggagaaacagaaactagcaggaggcgccggcggcggaaa 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 576 caacaaggtcctgaccaaggcggagaaacagaaactagcaggaggcgccggcggcggaaa 635 Query: 467 gaaggcaaccaaggagaagtaaccatcaggatggtgaggaagcacaaaggaacactggcg 526 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 636 gaaggcaaccaagaagaagtaaccatcaggatggtgaggaagcacaaaggaacactggcg 695 Query: 527 gtgatcgagaagatctaccaggatatacccgcattctccgacatcttcaccgaggagagc 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 696 gtgatcgagaagatctaccaggatatacccgcattctccgacatcttcaccgaggagagc 755 Query: 587 ttctacatgttcgccttctgtttcgtgtgcgccaccattctggtggccttcattctctcc 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 756 ttctacatgttcgccttctgtttcgtgtgcgccaccattctggtggccttcattctctcc 815 Query: 647 cggttcatcaccatcaagcccgtcgatttctaagccaattgtattgttcaatttcgcaca 706 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 816 cggttcatcaccatcaagcccgtcgatttctaagccaattgtattgttcaattccgcaca 875 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,608 Number of Sequences: 18737 Number of extensions: 21608 Number of successful extensions: 666 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 662 Number of HSP's gapped (non-prelim): 4 length of query: 706 length of database: 41,270,998 effective HSP length: 17 effective length of query: 689 effective length of database: 40,952,469 effective search space: 28216251141 effective search space used: 28216251141 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA802569 AA802569|AA802569 GM05844.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM05844 5, mRNA sequence. (660 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,558 Number of Sequences: 18737 Number of extensions: 11558 Number of successful extensions: 268 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 268 Number of HSP's gapped (non-prelim): 0 length of query: 660 length of database: 41,270,998 effective HSP length: 17 effective length of query: 643 effective length of database: 40,952,469 effective search space: 26332437567 effective search space used: 26332437567 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA802785 AA802785|AA802785 GM06310.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06310 5, mRNA sequence. (576 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,460 Number of Sequences: 18737 Number of extensions: 12460 Number of successful extensions: 603 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 603 Number of HSP's gapped (non-prelim): 0 length of query: 576 length of database: 41,270,998 effective HSP length: 17 effective length of query: 559 effective length of database: 40,952,469 effective search space: 22892430171 effective search space used: 22892430171 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA802905 AA802905|AA802905 GM06547.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06547 5 similar to CG9266: FBan0009266 GO:[] located on: 2L 39A1-39A1;: 08/13/2002, mRNA sequence. (676 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9266-RB feature: mRNA loc=2L:complement(20935261..20937488,209... 957 0.0 >CG9266-RB feature: mRNA loc=2L:complement(20935261..20937488, 20938529..20938685);ID=FBan0009266;gene_id=FBgn0032909;g ene_sym=CG9266;sym=CG9266;scaffold=AE003668;len=2385 Length = 2385 Score = 957 bits (483), Expect = 0.0 Identities = 492/495 (99%) Strand = Plus / Plus Query: 182 agcatcgtccacaattagcgccatcgtagccagggagccaagaagcaaccaatggaacat 241 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 158 agcatcgtccataattagcgccatcgtagccagggagccaagaagcaaccaatggaacat 217 Query: 242 gttgatgccggtgcgggagtacaacaagcacatagccaaaataccaaattgcaagatgag 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 218 gttgatgccggtgcgggagtacaacaagcacatagccaaaataccaaattgcaagatgag 277 Query: 302 gcagcggccaacgcttagagccaccttcgcatccctgctgctgctccttctcattgccca 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 278 gcagcggccaacgcttagagccaccttcgcatccctgctgctgctccttctcattgccca 337 Query: 362 gacgctcgatccggcggctgccagtggatcagccggaagtggtgccgcagcggccggagc 421 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 gacgctcgatctggcggctgccagtggatcagccggaagtggtgccgcagcggccggagc 397 Query: 422 tgcaggtcctgccgcgtccggtggcgcgggtggcgggagtctgagcagtggagcccccac 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 tgcaggtcctgccgcgtccggtggcgcgggtggcgggagtctgagcagtggagcccccac 457 Query: 482 tctcattgccaatctcacggaacaaggcagtcccggtgtgtataattcgacaatgggtta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 tctcattgccaatctcacggaacaaggcagtcccggtgtgtataattcgacaatgggtta 517 Query: 542 atgctaattactagtatatatatacatggcatttacgtggcagtttgctgacctttttac 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 518 atgctaattactagtatatatatacatggcatttacgtggcagtttgctgacctttttac 577 Query: 602 cttttggccctcaacgtaaacgacgtcgtcatttcggtatttgctaaatgtttatgcggg 661 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 578 cttttggccctcaacgtaaacgacgtcgtcatttcggtatttgctaaatgtttatgcgga 637 Query: 662 atcgtttctatgaaa 676 ||||||||||||||| Sbjct: 638 atcgtttctatgaaa 652 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,662 Number of Sequences: 18737 Number of extensions: 28662 Number of successful extensions: 717 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 716 Number of HSP's gapped (non-prelim): 1 length of query: 676 length of database: 41,270,998 effective HSP length: 17 effective length of query: 659 effective length of database: 40,952,469 effective search space: 26987677071 effective search space used: 26987677071 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA803019 AA803019|AA803019 GM06790.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06790 5, mRNA sequence. (693 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,849 Number of Sequences: 18737 Number of extensions: 12849 Number of successful extensions: 370 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 370 Number of HSP's gapped (non-prelim): 0 length of query: 693 length of database: 41,270,998 effective HSP length: 17 effective length of query: 676 effective length of database: 40,952,469 effective search space: 27683869044 effective search space used: 27683869044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA803024 AA803024|AA803024 GM06804.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06804 5, mRNA sequence. (705 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 26,112 Number of Sequences: 18737 Number of extensions: 26112 Number of successful extensions: 1882 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1882 Number of HSP's gapped (non-prelim): 0 length of query: 705 length of database: 41,270,998 effective HSP length: 17 effective length of query: 688 effective length of database: 40,952,469 effective search space: 28175298672 effective search space used: 28175298672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA803101 AA803101|AA803101 GM06994.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06994 5, mRNA sequence. (634 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,773 Number of Sequences: 18737 Number of extensions: 11773 Number of successful extensions: 237 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 237 Number of HSP's gapped (non-prelim): 0 length of query: 634 length of database: 41,270,998 effective HSP length: 17 effective length of query: 617 effective length of database: 40,952,469 effective search space: 25267673373 effective search space used: 25267673373 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA803114 AA803114|AA803114 GM07040.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07040 5, mRNA sequence. (703 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,738 Number of Sequences: 18737 Number of extensions: 13738 Number of successful extensions: 677 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 677 Number of HSP's gapped (non-prelim): 0 length of query: 703 length of database: 41,270,998 effective HSP length: 17 effective length of query: 686 effective length of database: 40,952,469 effective search space: 28093393734 effective search space used: 28093393734 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA803125 AA803125|AA803125 GM07077.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07077 5, mRNA sequence. (629 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31688-RA feature: mRNA loc=2L:join(20398769..20398903,20401666... 948 0.0 >CG31688-RA feature: mRNA loc=2L:join(20398769..20398903,20401666..20402471, 20410799..20410853,20410907..20410988,20411384..20411515, 20411687..20413687);ID=FBan0031688;gene_id=FBgn0051688;ge ne_sym=CG31688;sym=CG31688;scaffold=AE003666;len=3211 Length = 3211 Score = 948 bits (478), Expect = 0.0 Identities = 478/478 (100%) Strand = Plus / Plus Query: 1 cttagatcagggatgcaagccaaggggaatcgggatgttttcggaattcacaatcatggt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2734 cttagatcagggatgcaagccaaggggaatcgggatgttttcggaattcacaatcatggt 2793 Query: 61 tcgatttagtgggtcatgtgaaagttctctacttgaaagtgaagaagatatcaaaagctt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2794 tcgatttagtgggtcatgtgaaagttctctacttgaaagtgaagaagatatcaaaagctt 2853 Query: 121 gtggggattggaattcatatccacaaaacagctttccaaaatgatttcaagttccaaata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2854 gtggggattggaattcatatccacaaaacagctttccaaaatgatttcaagttccaaata 2913 Query: 181 cttccctcaaaacttttgtatctaaaaaataattctacattttccgaaccactagcctta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 cttccctcaaaacttttgtatctaaaaaataattctacattttccgaaccactagcctta 2973 Query: 241 cgaaatatggatatgatataatcacgagcggcttgcatccctgttatattttggtcgctg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2974 cgaaatatggatatgatataatcacgagcggcttgcatccctgttatattttggtcgctg 3033 Query: 301 ttctcatttgcgatatcaacaagagattccatttcgatcgacagtcgatacacgagtcat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3034 ttctcatttgcgatatcaacaagagattccatttcgatcgacagtcgatacacgagtcat 3093 Query: 361 gaatcattcatcacgaatccctatcattcggtgaaagttcataatgtacaatttatatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3094 gaatcattcatcacgaatccctatcattcggtgaaagttcataatgtacaatttatatat 3153 Query: 421 gctaaaacgtaaaccagaaatgttagtaaacaatttttatacacacatcacagccaca 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3154 gctaaaacgtaaaccagaaatgttagtaaacaatttttatacacacatcacagccaca 3211 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,503 Number of Sequences: 18737 Number of extensions: 12503 Number of successful extensions: 245 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 242 Number of HSP's gapped (non-prelim): 3 length of query: 629 length of database: 41,270,998 effective HSP length: 17 effective length of query: 612 effective length of database: 40,952,469 effective search space: 25062911028 effective search space used: 25062911028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA803145 AA803145|AA803145 GM10308.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM10308 5, mRNA sequence. (641 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,096 Number of Sequences: 18737 Number of extensions: 13096 Number of successful extensions: 395 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 395 Number of HSP's gapped (non-prelim): 0 length of query: 641 length of database: 41,270,998 effective HSP length: 17 effective length of query: 624 effective length of database: 40,952,469 effective search space: 25554340656 effective search space used: 25554340656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA803308 AA803308|AA803308 GM10545.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM10545 5, mRNA sequence. (632 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,766 Number of Sequences: 18737 Number of extensions: 14766 Number of successful extensions: 626 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 626 Number of HSP's gapped (non-prelim): 0 length of query: 632 length of database: 41,270,998 effective HSP length: 17 effective length of query: 615 effective length of database: 40,952,469 effective search space: 25185768435 effective search space used: 25185768435 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA803925 AA803925|AA803925 GM10858.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM10858 5 similar to CG11871: FBan0011871 GO:[] located on: 3R 86A1-86A1;: 08/13/2002, mRNA sequence. (621 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,426 Number of Sequences: 18737 Number of extensions: 11426 Number of successful extensions: 302 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 302 Number of HSP's gapped (non-prelim): 0 length of query: 621 length of database: 41,270,998 effective HSP length: 17 effective length of query: 604 effective length of database: 40,952,469 effective search space: 24735291276 effective search space used: 24735291276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA804051 AA804051|AA804051 GM12657.5prime GM Drosophila melanogaster ovary pOT2 Drosophila melanogaster cDNA clone GM12657 5, mRNA sequence. (554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,071 Number of Sequences: 18737 Number of extensions: 14071 Number of successful extensions: 441 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 441 Number of HSP's gapped (non-prelim): 0 length of query: 554 length of database: 41,270,998 effective HSP length: 17 effective length of query: 537 effective length of database: 40,952,469 effective search space: 21991475853 effective search space used: 21991475853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA816558 AA816558|AA816558 LD02060.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02060 5, mRNA sequence. (578 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,121 Number of Sequences: 18737 Number of extensions: 14121 Number of successful extensions: 774 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 774 Number of HSP's gapped (non-prelim): 0 length of query: 578 length of database: 41,270,998 effective HSP length: 17 effective length of query: 561 effective length of database: 40,952,469 effective search space: 22974335109 effective search space used: 22974335109 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA820351 AA820351|AA820351 LD23922.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD23922 5, mRNA sequence. (449 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7712 Number of Sequences: 18737 Number of extensions: 7712 Number of successful extensions: 598 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 598 Number of HSP's gapped (non-prelim): 0 length of query: 449 length of database: 41,270,998 effective HSP length: 17 effective length of query: 432 effective length of database: 40,952,469 effective search space: 17691466608 effective search space used: 17691466608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA949547 AA949547|AA949547 LD28384.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD28384 5, mRNA sequence. (676 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,338 Number of Sequences: 18737 Number of extensions: 13338 Number of successful extensions: 314 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 0 length of query: 676 length of database: 41,270,998 effective HSP length: 17 effective length of query: 659 effective length of database: 40,952,469 effective search space: 26987677071 effective search space used: 26987677071 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA949869 AA949869|AA949869 LD29917.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD29917 5, mRNA sequence. (695 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,918 Number of Sequences: 18737 Number of extensions: 15918 Number of successful extensions: 338 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 338 Number of HSP's gapped (non-prelim): 0 length of query: 695 length of database: 41,270,998 effective HSP length: 17 effective length of query: 678 effective length of database: 40,952,469 effective search space: 27765773982 effective search space used: 27765773982 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA952011 AA952011|AA952011 LD29015.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD29015 5 similar to CG14464: FBan0014464 GO:[] located on: 2R 41F2-41F2;: 08/13/2002, mRNA sequence. (608 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,337 Number of Sequences: 18737 Number of extensions: 12337 Number of successful extensions: 324 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 324 Number of HSP's gapped (non-prelim): 0 length of query: 608 length of database: 41,270,998 effective HSP length: 17 effective length of query: 591 effective length of database: 40,952,469 effective search space: 24202909179 effective search space used: 24202909179 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AA979171 AA979171|AA979171 LD33458.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD33458 5, mRNA sequence. (724 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,473 Number of Sequences: 18737 Number of extensions: 15473 Number of successful extensions: 317 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 317 Number of HSP's gapped (non-prelim): 0 length of query: 724 length of database: 41,270,998 effective HSP length: 17 effective length of query: 707 effective length of database: 40,952,469 effective search space: 28953395583 effective search space used: 28953395583 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AF107891 AF107891|AF107891 AF107891 Drosophila melanogaster library (Schwartz YB) Drosophila melanogaster cDNA clone gm04775, mRNA sequence. (1035 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value br-RF feature: mRNA loc=X:join(1380910..1381479,1392604..1392792... 979 0.0 >br-RF feature: mRNA loc=X:join(1380910..1381479,1392604..1392792, 1392868..1393321,1393411..1393684,1393772..1393911, 1394056..1394106, 1417402..1418314);ID=FBan0011491;gene_id=FBgn0000210;gene _sym=br;sym=CG11491;scaffold=AE003421;len=2591 Length = 2591 Score = 979 bits (494), Expect = 0.0 Identities = 574/592 (96%), Gaps = 8/592 (1%) Strand = Plus / Plus Query: 176 gttatcagggataaaatatcaagtatgcagtaggaaagtaattttttctacttattcacg 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 gttatcagggataaaatatcaagtatgcagtaggaaagtaattttttctacttattcacg 2043 Query: 236 aatacgacgaataaagtaacagaaattaaaatcacttttttatatacacatacatataca 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 aatacgacgaataaagtaacagaaattaaaatcacttttttatatacacatacatataca 2103 Query: 296 cacgcgagcgtataaacgataaatgtgcatatgcgtatgcgcaagctaagcgaaacaact 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 cacgcgagcgtataaacgataaatgtgcatatgcgtatgcgcaagctaagcgaaacaact 2163 Query: 356 aaactaatgtctatgtatacatgtatatactttacaccatttaccatatacaatttataa 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 aaactaatgtctatgtatacatgtatatactttacaccatttaccatatacaatttataa 2223 Query: 416 gccgatatgccgatgatatacacatatacaatgttagtttggtgtatagaagacagatga 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 gccgatatgccgatgatatacacatatacaatgttagtttggtgtatagaagacagatga 2283 Query: 476 gctgtaaacgtttttgcaaatcaagaaaataacgtatttaacaaaaccgcaaagtaactc 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 gctgtaaacgtttttgcaaatcaagaaaataacgtatttaacaaaaccgcaaagtaactc 2343 Query: 536 agtgatttttaccagcgaagtacaaatgttctgaaattaaattaactaacaagtaataaa 595 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 2344 agtgatttttaccagcgaagtacaaatgttctgaaattaaattaactaacaagtaat-aa 2402 Query: 596 gcgccgacgagcagatcagcaaaatcgaagtaactagcgacnggagtattcagagcagaa 655 |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct: 2403 gcgccgacgagcagatcagc-aaatcgaagtagctagcgacgggagtattcagagcagaa 2461 Query: 656 tcataaagggaatanggnccgaagttagcactggcccaaaatagng-ctga-catgttgc 713 |||||||||||||| || ||| ||||||||||| |||||||||| | |||| |||||||| Sbjct: 2462 tcataaagggaata-gggccgcagttagcactgccccaaaatagtgtctgatcatgttgc 2520 Query: 714 atgc-ancaggaagggcangcaaacatgc-acaacc-ccaagnccagactgg 762 |||| | ||||| ||||| |||||||||| |||||| ||||| ||||||||| Sbjct: 2521 atgcaaccaggaggggcaggcaaacatgcaacaaccaccaagcccagactgg 2572 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,308 Number of Sequences: 18737 Number of extensions: 16308 Number of successful extensions: 452 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 446 Number of HSP's gapped (non-prelim): 2 length of query: 1035 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1017 effective length of database: 40,933,732 effective search space: 41629605444 effective search space used: 41629605444 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AF107892 AF107892|AF107892 AF107892 Drosophila melanogaster library (Schwartz YB) Drosophila melanogaster cDNA clone gm04775, mRNA sequence. (961 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,170 Number of Sequences: 18737 Number of extensions: 13170 Number of successful extensions: 290 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 290 Number of HSP's gapped (non-prelim): 0 length of query: 961 length of database: 41,270,998 effective HSP length: 18 effective length of query: 943 effective length of database: 40,933,732 effective search space: 38600509276 effective search space used: 38600509276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI062384 AI062384|AI062384 GH01566.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH01566 5, mRNA sequence. (704 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,981 Number of Sequences: 18737 Number of extensions: 13981 Number of successful extensions: 468 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 468 Number of HSP's gapped (non-prelim): 0 length of query: 704 length of database: 41,270,998 effective HSP length: 17 effective length of query: 687 effective length of database: 40,952,469 effective search space: 28134346203 effective search space used: 28134346203 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI062686 AI062686|AI062686 GH01976.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH01976 5, mRNA sequence. (788 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,005 Number of Sequences: 18737 Number of extensions: 16005 Number of successful extensions: 397 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 397 Number of HSP's gapped (non-prelim): 0 length of query: 788 length of database: 41,270,998 effective HSP length: 17 effective length of query: 771 effective length of database: 40,952,469 effective search space: 31574353599 effective search space used: 31574353599 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI063451 AI063451|AI063451 GH03275.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03275 5, mRNA sequence. (686 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,933 Number of Sequences: 18737 Number of extensions: 13933 Number of successful extensions: 258 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 258 Number of HSP's gapped (non-prelim): 0 length of query: 686 length of database: 41,270,998 effective HSP length: 17 effective length of query: 669 effective length of database: 40,952,469 effective search space: 27397201761 effective search space used: 27397201761 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI063825 AI063825|AI063825 GH03916.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03916 5, mRNA sequence. (911 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,258 Number of Sequences: 18737 Number of extensions: 20258 Number of successful extensions: 515 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 515 Number of HSP's gapped (non-prelim): 0 length of query: 911 length of database: 41,270,998 effective HSP length: 17 effective length of query: 894 effective length of database: 40,952,469 effective search space: 36611507286 effective search space used: 36611507286 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI107091 AI107091|AI107091 GH06385.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06385 5, mRNA sequence. (677 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,070 Number of Sequences: 18737 Number of extensions: 13070 Number of successful extensions: 255 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 255 Number of HSP's gapped (non-prelim): 0 length of query: 677 length of database: 41,270,998 effective HSP length: 17 effective length of query: 660 effective length of database: 40,952,469 effective search space: 27028629540 effective search space used: 27028629540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI107373 AI107373|AI107373 GH04183.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH04183 5 similar to CG17180: FBan0017180 GO:[] located on: 3L 61C6-61C6;: 08/12/2002, mRNA sequence. (508 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17180-RA feature: mRNA loc=3L:join(521480..521569,521631..5220... 1007 0.0 >CG17180-RA feature: mRNA loc=3L:join(521480..521569,521631..522057,522114..522588, 522646..522779);ID=FBan0017180;gene_id=FBgn0035140;gene_s ym=CG17180;sym=CG17180;scaffold=AE003468;len=1126 Length = 1126 Score = 1007 bits (508), Expect = 0.0 Identities = 508/508 (100%) Strand = Plus / Minus Query: 1 attatatgtatttacggaatgactagaaagacaagatctctttgattggttgatcacagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 attatatgtatttacggaatgactagaaagacaagatctctttgattggttgatcacagg 1055 Query: 61 atagcgtagccctattttacatggtgctgtccaacatgtccaccagccgcttgatctgcc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1054 atagcgtagccctattttacatggtgctgtccaacatgtccaccagccgcttgatctgcc 995 Query: 121 ttatgcgctgacccagctgctctgtgggtttcatcgacttggtgatttcctccgccttgg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 ttatgcgctgacccagctgctctgtgggtttcatcgacttggtgatttcctccgccttgg 935 Query: 181 ccagcaattggtactggcacttgatattcgcgtccaaagtgtccgtcagcttgttgaccg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 ccagcaattggtactggcacttgatattcgcgtccaaagtgtccgtcagcttgttgaccg 875 Query: 241 cgttgcgatggacctccacgttgtcggccgttatggaggagattgagtgcagcaggttgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 cgttgcgatggacctccacgttgtcggccgttatggaggagattgagtgcagcaggttgc 815 Query: 301 ccaggttttccatcagattgtccaccgagctggccaagtactgagcctccagttcgatgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ccaggttttccatcagattgtccaccgagctggccaagtactgagcctccagttcgatgt 755 Query: 361 cgctcaagacgctgccgtccacttcgggaatgttgcgcgactgcaggaaccgccgcgtga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 cgctcaagacgctgccgtccacttcgggaatgttgcgcgactgcaggaaccgccgcgtga 695 Query: 421 gcagaccgttgccggaagtggctccaatgggacccatggagctcaggggcgtggtgtgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 gcagaccgttgccggaagtggctccaatgggacccatggagctcaggggcgtggtgtgct 635 Query: 481 ccgaggagtaggccgaagccgccacgcg 508 |||||||||||||||||||||||||||| Sbjct: 634 ccgaggagtaggccgaagccgccacgcg 607 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,956 Number of Sequences: 18737 Number of extensions: 13956 Number of successful extensions: 328 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 327 Number of HSP's gapped (non-prelim): 1 length of query: 508 length of database: 41,270,998 effective HSP length: 17 effective length of query: 491 effective length of database: 40,952,469 effective search space: 20107662279 effective search space used: 20107662279 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI107428 AI107428|AI107428 GH05108.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05108 5, mRNA sequence. (497 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,435 Number of Sequences: 18737 Number of extensions: 17435 Number of successful extensions: 567 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 567 Number of HSP's gapped (non-prelim): 0 length of query: 497 length of database: 41,270,998 effective HSP length: 17 effective length of query: 480 effective length of database: 40,952,469 effective search space: 19657185120 effective search space used: 19657185120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI107839 AI107839|AI107839 GH05702.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05702 5, mRNA sequence. (717 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,116 Number of Sequences: 18737 Number of extensions: 14116 Number of successful extensions: 298 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 298 Number of HSP's gapped (non-prelim): 0 length of query: 717 length of database: 41,270,998 effective HSP length: 17 effective length of query: 700 effective length of database: 40,952,469 effective search space: 28666728300 effective search space used: 28666728300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI108514 AI108514|AI108514 GH07363.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07363 5 similar to CG7135: FBan0007135 GO:[] located on: X 16F7-16F7;: 08/12/2002, mRNA sequence. (771 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7135-RA feature: mRNA loc=X:join(17834640..17835004,17835069..... 1469 0.0 >CG7135-RA feature: mRNA loc=X:join(17834640..17835004,17835069..17835543, 17835703..17836352);ID=FBan0007135;gene_id=FBgn0030895;ge ne_sym=CG7135;sym=CG7135;scaffold=AE003507;len=1490 Length = 1490 Score = 1469 bits (741), Expect = 0.0 Identities = 761/771 (98%) Strand = Plus / Minus Query: 1 caacatgtacaaattcaacaaggcctttataatttatttgaaaatagacnnnnnnnnnnt 60 ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1340 caacatgtacaaattcaacaaggcctttataatttatttgaaaatagacaaaaaaaaaat 1281 Query: 61 gtgtttacgaactatgtatataccgcctagtcgaacagtttcaactcgtccagacgtttc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1280 gtgtttacgaactatgtatataccgcctagtcgaacagtttcaactcgtccagacgtttc 1221 Query: 121 aaggtgcacttgaggctctccagcgtgcgagtgtttccttcgaacatgagctgcaccttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1220 aaggtgcacttgaggctctccagcgtgcgagtgtttccttcgaacatgagctgcaccttc 1161 Query: 181 tgcctggcgaatgtctcgtcgtgaaagttcttcagtgagttgtcctcggagtccacaccg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1160 tgcctggcgaatgtctcgtcgtgaaagttcttcagtgagttgtcctcggagtccacaccg 1101 Query: 241 atcatgctcatcagcgggaagaatccgaaagccacaaagaaaccgtaggcttcgcgcttt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1100 atcatgctcatcagcgggaagaatccgaaagccacaaagaaaccgtaggcttcgcgcttt 1041 Query: 301 ctgatttcatccatgatatcctcatagctgggcagctccttggaccagggcagatgcttc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1040 ctgatttcatccatgatatcctcatagctgggcagctccttggaccagggcagatgcttc 981 Query: 361 aggcagtccaccagggacctgtagtagatgtcgacaagctcctgccgccggtcacgtagc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 980 aggcagtccaccagggacctgtagtagatgtcgacaagctcctgccgccggtcacgtagc 921 Query: 421 acctccagttccaagctggtgttcaggaagtagttgatgtcgaagcccaggctgccgtag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 920 acctccagttccaagctggtgttcaggaagtagttgatgtcgaagcccaggctgccgtag 861 Query: 481 aagcacagctggaagtcaataatcttcacctgctgcaccgtgtactccgcatcgtacttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 aagcacagctggaagtcaataatcttcacctgctgcaccgtgtactccgcatcgtacttg 801 Query: 541 aagaatatgttgttcacccaaagatcgccgtgattgagcacgttatggttgccgcgcagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 aagaatatgttgttcacccaaagatcgccgtgattgagcacgttatggttgccgcgcagt 741 Query: 601 gggtacaccgccttcaggactcgttcggtgaagtgctcgtggtagcggtagagctttgtg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 740 gggtacaccgccttcaggactcgttcggtgaagtgctcgtggtagcggtagagctttgtg 681 Query: 661 gtgatcccaccgaatccctcacagtcaccgaccagagcggccagctttaggagctgagtg 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 680 gtgatcccaccgaatccctcacagtcaccgaccagagcggccagctttaggagctgagtg 621 Query: 721 ccgaagagcagcttgaagggctccgaattgatggcatccatgtggagcaga 771 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 620 ccgaagagcagcttgaagggctccgaattgatggcatccatgtggagcaga 570 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,542 Number of Sequences: 18737 Number of extensions: 19542 Number of successful extensions: 502 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 500 Number of HSP's gapped (non-prelim): 2 length of query: 771 length of database: 41,270,998 effective HSP length: 17 effective length of query: 754 effective length of database: 40,952,469 effective search space: 30878161626 effective search space used: 30878161626 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI108579 AI108579|AI108579 GH07769.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07769 5 similar to CG7859: FBan0007859 GO:[] located on: 3R 93D9-93D9;: 08/12/2002, mRNA sequence. (679 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mod(mdg4)-RY feature: mRNA loc=3R:join(17182690..17183024,comple... 670 0.0 mod(mdg4)-RX feature: mRNA loc=3R:join(17183136..17183430,comple... 575 e-163 >mod(mdg4)-RY feature: mRNA loc=3R:join(17182690..17183024, complement(17191746..17192598), complement(17193288..17193427), complement(17193505..17193762), complement(17193974..17194085));ID=FBan0032491;gene_id=FB gn0002781;gene_sym=mod(mdg4);sym=CG32491;scaffold=AE00373 4;len=1698 Length = 1698 Score = 670 bits (338), Expect = 0.0 Identities = 338/338 (100%) Strand = Plus / Plus Query: 47 aagaacaggaggatgacttcaagttgcacctgcctctcctcgtgacaagaagaaagaaga 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1361 aagaacaggaggatgacttcaagttgcacctgcctctcctcgtgacaagaagaaagaaga 1420 Query: 107 cgcccggtggctcccgcaagcagagttttgaccacctggaggtgagcttcaccagaagca 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1421 cgcccggtggctcccgcaagcagagttttgaccacctggaggtgagcttcaccagaagca 1480 Query: 167 ataggggtaacaacttgctgaccatcgatgggaagcccttcaccctcaatcgtcggatca 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1481 ataggggtaacaacttgctgaccatcgatgggaagcccttcaccctcaatcgtcggatca 1540 Query: 227 aggatgtgtgctactgggagtgcgtcaagctgcgctgcaagtacatcaagtgctccgccc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1541 aggatgtgtgctactgggagtgcgtcaagctgcgctgcaagtacatcaagtgctccgccc 1600 Query: 287 gtgtggtgaccaaatccaatcggatctcggcactgagcgggctccacaaccatccctaag 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1601 gtgtggtgaccaaatccaatcggatctcggcactgagcgggctccacaaccatccctaag 1660 Query: 347 ttacgaactacctgtgccatctcattagtctaataaag 384 |||||||||||||||||||||||||||||||||||||| Sbjct: 1661 ttacgaactacctgtgccatctcattagtctaataaag 1698 >mod(mdg4)-RX feature: mRNA loc=3R:join(17183136..17183430, complement(17191746..17192598), complement(17193288..17193427), complement(17193505..17193762), complement(17193974..17194085));ID=FBan0032491;gene_id=FB gn0002781;gene_sym=mod(mdg4);sym=CG32491;scaffold=AE00373 4;len=1658 Length = 1658 Score = 575 bits (290), Expect = e-163 Identities = 296/298 (99%) Strand = Plus / Plus Query: 382 aagcatgctaccaactggtgcccaatcgccgcggtgggaagaacctcatcttccaggggc 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1361 aagcatgctaccaactggtgcccaatcgccgcggtgggaagaacctcatcttccaggggc 1420 Query: 442 acatgtactccgtggagcgcaagtaccgaaacagcatcaactgggtatgttccaagaaca 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1421 acatgtactccgtggagcgcaagtaccgaaacagcatcaactgggtatgttccaagaaca 1480 Query: 502 gcaacagcgtgcttcgctgcccggcgaggtgcgtcacaaatccggagagtggcaatggca 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1481 gcaacagcgtgcttcgctgcccggcgaggtgcgtcacaaatccggagagtggcaatggca 1540 Query: 562 tcaagctgagccaccgacgccacaatcattcggcggatgcctttaagccccacaagcgct 621 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1541 tcaagctgagccaccgacgccacaatcatccggcggatgcctttaagccccacaagcgct 1600 Query: 622 gtcgaaagcgtcccggcgatcgaaagttacaagtaaccatgtttcaggatgcaaagca 679 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1601 gtcgaaagcgtcccggcgatcgaaagtaacaagtaaccatgtttcaggatgcaaagca 1658 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,074 Number of Sequences: 18737 Number of extensions: 17074 Number of successful extensions: 338 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 336 Number of HSP's gapped (non-prelim): 2 length of query: 679 length of database: 41,270,998 effective HSP length: 17 effective length of query: 662 effective length of database: 40,952,469 effective search space: 27110534478 effective search space used: 27110534478 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI108619 AI108619|AI108619 GH07822.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07822 5, mRNA sequence. (572 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,990 Number of Sequences: 18737 Number of extensions: 11990 Number of successful extensions: 278 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 278 Number of HSP's gapped (non-prelim): 0 length of query: 572 length of database: 41,270,998 effective HSP length: 17 effective length of query: 555 effective length of database: 40,952,469 effective search space: 22728620295 effective search space used: 22728620295 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI109637 AI109637|AI109637 GH08880.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH08880 5 similar to GNBP2: FBan0004144 GO:[defense (immune) response (GO:0006952); transporter (GO:0005215)] located on: 3L 75D2-75D2;: 08/12/2002, mRNA sequence. (907 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value GNBP2-RD feature: mRNA loc=3L:complement(18622351..18622854,1862... 1790 0.0 GNBP2-RB feature: mRNA loc=3L:complement(18622352..18622854,1862... 1790 0.0 GNBP2-RA feature: mRNA loc=3L:complement(18622351..18622854,1862... 1790 0.0 GNBP2-RC feature: mRNA loc=3L:complement(18622352..18622854,1862... 1039 0.0 >GNBP2-RD feature: mRNA loc=3L:complement(18622351..18622854,18622927..18622983, 18623048..18623361,18623424..18623856, 18624258..18624292);ID=FBan0004144;gene_id=FBgn0040322;ge ne_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1343 Length = 1343 Score = 1790 bits (903), Expect = 0.0 Identities = 906/907 (99%) Strand = Plus / Minus Query: 1 acaaatgccacagctactccgcataaaccctaacatagtccatgaccatggcgctgtgcc 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1310 acaaatgccacagctactccgcataaaccctaacatagtctatgaccatggcgctgtgcc 1251 Query: 61 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1250 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 1191 Query: 121 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1190 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 1131 Query: 181 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1130 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 1071 Query: 241 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1070 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 1011 Query: 301 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1010 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 951 Query: 361 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 950 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 891 Query: 421 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 890 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 831 Query: 481 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 830 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 771 Query: 541 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 770 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 711 Query: 601 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 710 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 651 Query: 661 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 650 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 591 Query: 721 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 590 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 531 Query: 781 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 530 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 471 Query: 841 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 411 Query: 901 agatcag 907 ||||||| Sbjct: 410 agatcag 404 >GNBP2-RB feature: mRNA loc=3L:complement(18622352..18622854,18622927..18622983, 18623048..18623361,18623424..18623856, 18624098..18624305);ID=FBan0004144;gene_id=FBgn0040322;ge ne_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1515 Length = 1515 Score = 1790 bits (903), Expect = 0.0 Identities = 906/907 (99%) Strand = Plus / Minus Query: 1 acaaatgccacagctactccgcataaaccctaacatagtccatgaccatggcgctgtgcc 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1483 acaaatgccacagctactccgcataaaccctaacatagtctatgaccatggcgctgtgcc 1424 Query: 61 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1423 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 1364 Query: 121 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1363 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 1304 Query: 181 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1303 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 1244 Query: 241 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1243 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 1184 Query: 301 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1183 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 1124 Query: 361 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 1064 Query: 421 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1063 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 1004 Query: 481 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1003 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 944 Query: 541 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 943 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 884 Query: 601 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 883 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 824 Query: 661 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 823 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 764 Query: 721 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 763 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 704 Query: 781 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 703 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 644 Query: 841 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 584 Query: 901 agatcag 907 ||||||| Sbjct: 583 agatcag 577 >GNBP2-RA feature: mRNA loc=3L:complement(18622351..18622854,18622927..18622983, 18623048..18623361,18623424..18623856,18624098..18624154, 18624217..18624292);ID=FBan0004144;gene_id=FBgn0040322;ge ne_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1441 Length = 1441 Score = 1790 bits (903), Expect = 0.0 Identities = 906/907 (99%) Strand = Plus / Minus Query: 1 acaaatgccacagctactccgcataaaccctaacatagtccatgaccatggcgctgtgcc 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1408 acaaatgccacagctactccgcataaaccctaacatagtctatgaccatggcgctgtgcc 1349 Query: 61 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1348 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 1289 Query: 121 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1288 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 1229 Query: 181 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1228 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 1169 Query: 241 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1168 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 1109 Query: 301 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1108 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 1049 Query: 361 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1048 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 989 Query: 421 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 988 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 929 Query: 481 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 928 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 869 Query: 541 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 868 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 809 Query: 601 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 808 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 749 Query: 661 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 748 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 689 Query: 721 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 688 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 629 Query: 781 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 628 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 569 Query: 841 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 509 Query: 901 agatcag 907 ||||||| Sbjct: 508 agatcag 502 >GNBP2-RC feature: mRNA loc=3L:complement(18622352..18622854,18622927..18623361, 18623424..18623856, 18624217..18624273);ID=FBan0004144;gene_id=FBgn0040322;ge ne_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1428 Length = 1428 Score = 1039 bits (524), Expect = 0.0 Identities = 527/528 (99%) Strand = Plus / Minus Query: 1 acaaatgccacagctactccgcataaaccctaacatagtccatgaccatggcgctgtgcc 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1396 acaaatgccacagctactccgcataaaccctaacatagtctatgaccatggcgctgtgcc 1337 Query: 61 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1336 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 1277 Query: 121 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 1217 Query: 181 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1216 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 1157 Query: 241 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1156 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 1097 Query: 301 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 1037 Query: 361 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 977 Query: 421 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 917 Query: 481 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagat 528 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagat 869 Score = 751 bits (379), Expect = 0.0 Identities = 379/379 (100%) Strand = Plus / Minus Query: 529 aggggaaaagccaatcccccttgggcaacttggcgcgcacgacgattttgccaaatttga 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 804 aggggaaaagccaatcccccttgggcaacttggcgcgcacgacgattttgccaaatttga 745 Query: 589 aactgaaagagtttctggtgtgaatttgggcggagaaaactggaggcttgatgctataga 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 744 aactgaaagagtttctggtgtgaatttgggcggagaaaactggaggcttgatgctataga 685 Query: 649 agatgccgtgcgcaatgttgcactcctgttccggactttcgacggccgtacagcgatctc 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 684 agatgccgtgcgcaatgttgcactcctgttccggactttcgacggccgtacagcgatctc 625 Query: 709 ccagtttgaagctgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgc 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 ccagtttgaagctgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgc 565 Query: 769 cttccttcacaaagcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgt 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 cttccttcacaaagcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgt 505 Query: 829 ggtacatgcgctgtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgaga 888 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 504 ggtacatgcgctgtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgaga 445 Query: 889 agttgtcctcaaagatcag 907 ||||||||||||||||||| Sbjct: 444 agttgtcctcaaagatcag 426 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 22,438 Number of Sequences: 18737 Number of extensions: 22438 Number of successful extensions: 622 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 617 Number of HSP's gapped (non-prelim): 5 length of query: 907 length of database: 41,270,998 effective HSP length: 17 effective length of query: 890 effective length of database: 40,952,469 effective search space: 36447697410 effective search space used: 36447697410 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI134559 AI134559|AI134559 GH12056.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH12056 5, mRNA sequence. (888 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,252 Number of Sequences: 18737 Number of extensions: 18252 Number of successful extensions: 350 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 350 Number of HSP's gapped (non-prelim): 0 length of query: 888 length of database: 41,270,998 effective HSP length: 17 effective length of query: 871 effective length of database: 40,952,469 effective search space: 35669600499 effective search space used: 35669600499 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI238552 AI238552|AI238552 GH14618.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH14618 5 similar to CG1277: FBan0001277 GO:[] located on: 3R 82D6-82D6;: 08/12/2002, mRNA sequence. (666 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,827 Number of Sequences: 18737 Number of extensions: 14827 Number of successful extensions: 318 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 318 Number of HSP's gapped (non-prelim): 0 length of query: 666 length of database: 41,270,998 effective HSP length: 17 effective length of query: 649 effective length of database: 40,952,469 effective search space: 26578152381 effective search space used: 26578152381 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI239153 AI239153|AI239153 GM03761.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03761 5, mRNA sequence. (629 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR33328-RA feature: ncRNA loc=3R:complement(9463445..9466209);ID... 609 e-173 >CR33328-RA feature: ncRNA loc=3R:complement(9463445..9466209);ID=FBan0033328;gene_ id=FBgn0053328;gene_sym=CR33328;sym=CR33328;type=ncRNA;s caffold=AE003701;len=2765 Length = 2765 Score = 609 bits (307), Expect = e-173 Identities = 307/307 (100%) Strand = Plus / Plus Query: 323 gaaagaaagaaaaacgattcataaaaacacacttcgtcaattttagtaattttaattcaa 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 gaaagaaagaaaaacgattcataaaaacacacttcgtcaattttagtaattttaattcaa 384 Query: 383 gcatatatacatatataattttttcttatggtttcacatacacaagcattgctaatcgca 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 gcatatatacatatataattttttcttatggtttcacatacacaagcattgctaatcgca 444 Query: 443 aatgtatatataaatacctcttataattcgtatatctttgaatttgaaatttagcagaac 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 aatgtatatataaatacctcttataattcgtatatctttgaatttgaaatttagcagaac 504 Query: 503 cttgaaatgaactttttgctaataattatcctatcaaatgttgtcaatgtgcgtcgacaa 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 cttgaaatgaactttttgctaataattatcctatcaaatgttgtcaatgtgcgtcgacaa 564 Query: 563 tttgactgtataccaattatatatacatttgtacatttacatacacctttaatcataaac 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 tttgactgtataccaattatatatacatttgtacatttacatacacctttaatcataaac 624 Query: 623 tttgagt 629 ||||||| Sbjct: 625 tttgagt 631 Score = 561 bits (283), Expect = e-159 Identities = 286/287 (99%) Strand = Plus / Plus Query: 19 gcagcctcattcgttagatcgttcttttatttgctttatttgcatttccgctgcactttc 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 gcagcctcattcgttagatcgttcttttatttgctttatttgcatttccgctgcactttc 78 Query: 79 ttgaccaaaacgtaacgtaatgtccgaagcaatccatttttgaggcttgtcttcagttgc 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 ttgaccaaaacgtaacgtaatgtccgaagcaatccatttttgaggcttgtcttcagttgc 138 Query: 139 accgctagcgcattgcggcattctgcatgttcatacgttgattccaggataaagaaccac 198 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 139 accgctagcgcattgcggcattctgcatgttcatacgttgattccaggataaaaaaccac 198 Query: 199 aaacaaacaactaactaacttactgaacaacgacaagtaattacaactgcaatagcaaca 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 aaacaaacaactaactaacttactgaacaacgacaagtaattacaactgcaatagcaaca 258 Query: 259 tcaacaacatcttaattgtagcagtacaaaaatgcaacttttccaac 305 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 tcaacaacatcttaattgtagcagtacaaaaatgcaacttttccaac 305 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,024 Number of Sequences: 18737 Number of extensions: 19024 Number of successful extensions: 904 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 899 Number of HSP's gapped (non-prelim): 5 length of query: 629 length of database: 41,270,998 effective HSP length: 17 effective length of query: 612 effective length of database: 40,952,469 effective search space: 25062911028 effective search space used: 25062911028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI239164 AI239164|AI239164 GM04363.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04363 5, mRNA sequence. (689 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,418 Number of Sequences: 18737 Number of extensions: 17418 Number of successful extensions: 502 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 502 Number of HSP's gapped (non-prelim): 0 length of query: 689 length of database: 41,270,998 effective HSP length: 17 effective length of query: 672 effective length of database: 40,952,469 effective search space: 27520059168 effective search space used: 27520059168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI257976 AI257976|AI257976 LP06491.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP06491 5, mRNA sequence. (401 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7966 Number of Sequences: 18737 Number of extensions: 7966 Number of successful extensions: 589 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 589 Number of HSP's gapped (non-prelim): 0 length of query: 401 length of database: 41,270,998 effective HSP length: 17 effective length of query: 384 effective length of database: 40,952,469 effective search space: 15725748096 effective search space used: 15725748096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI258070 AI258070|AI258070 LP01161.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP01161 5, mRNA sequence. (525 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,705 Number of Sequences: 18737 Number of extensions: 10705 Number of successful extensions: 185 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 185 Number of HSP's gapped (non-prelim): 0 length of query: 525 length of database: 41,270,998 effective HSP length: 17 effective length of query: 508 effective length of database: 40,952,469 effective search space: 20803854252 effective search space used: 20803854252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI259710 AI259710|AI259710 LP03188.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP03188 5, mRNA sequence. (508 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,012 Number of Sequences: 18737 Number of extensions: 11012 Number of successful extensions: 305 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 305 Number of HSP's gapped (non-prelim): 0 length of query: 508 length of database: 41,270,998 effective HSP length: 17 effective length of query: 491 effective length of database: 40,952,469 effective search space: 20107662279 effective search space used: 20107662279 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI259802 AI259802|AI259802 LP03301.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP03301 5prime, mRNA sequence. (643 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32351-RA feature: mRNA loc=3L:join(8578598..8579906,8579962..8... 1275 0.0 >CG32351-RA feature: mRNA loc=3L:join(8578598..8579906,8579962..8580426, 8580483..8580805);ID=FBan0032351;gene_id=FBgn0052351;gen e_sym=CG32351;sym=CG32351;scaffold=AE003554;len=2097 Length = 2097 Score = 1275 bits (643), Expect = 0.0 Identities = 643/643 (100%) Strand = Plus / Plus Query: 1 tttcgaggttgaacacgtacacacttttagctagtctgggtgaaaaaatttcatgaatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101 tttcgaggttgaacacgtacacacttttagctagtctgggtgaaaaaatttcatgaatta 160 Query: 61 ttttgaagcggcacagaaaatcgaagagaaagttttcaatactagtagtaatattattca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 161 ttttgaagcggcacagaaaatcgaagagaaagttttcaatactagtagtaatattattca 220 Query: 121 gcattcatcaaagttttaagttaaacttcaagcaaaatgtttcggttttctcgcaatgcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 221 gcattcatcaaagttttaagttaaacttcaagcaaaatgtttcggttttctcgcaatgcc 280 Query: 181 ataacccgggcgtgtagtctctccattcgtcggccggaggtgatccgtcatcgcaggtac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 281 ataacccgggcgtgtagtctctccattcgtcggccggaggtgatccgtcatcgcaggtac 340 Query: 241 gcctcgcaggcgatcaaccagatgctgcagctgcagcagatggagatctgcgcggatcct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 341 gcctcgcaggcgatcaaccagatgctgcagctgcagcagatggagatctgcgcggatcct 400 Query: 301 ccgtcgcgtggcttggtcgttggagtctacgccgacgaggaggacaagaacgacgctggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 401 ccgtcgcgtggcttggtcgttggagtctacgccgacgaggaggacaagaacgacgctggc 460 Query: 361 atcctgacgccaaccggctggaagtacaatgtgcagaagacgcacggtcggttgctagaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 461 atcctgacgccaaccggctggaagtacaatgtgcagaagacgcacggtcggttgctagaa 520 Query: 421 gtgctgcgaatgtccggacccatgcccaaaaggggagagacccgcctcctgttcgccgtg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 521 gtgctgcgaatgtccggacccatgcccaaaaggggagagacccgcctcctgttcgccgtg 580 Query: 481 gagccggagcgcgtgccctactattcggcggtggcagttatcggtttgggtaaggaatgc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 581 gagccggagcgcgtgccctactattcggcggtggcagttatcggtttgggtaaggaatgc 640 Query: 541 ctgggctataacccatacgaggtgctcgacgagcagaaggaggccatccgacggtcggta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 641 ctgggctataacccatacgaggtgctcgacgagcagaaggaggccatccgacggtcggta 700 Query: 601 gcggatgcctgccgaatactcgctgaactggacaccgaccgca 643 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 701 gcggatgcctgccgaatactcgctgaactggacaccgaccgca 743 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,943 Number of Sequences: 18737 Number of extensions: 18943 Number of successful extensions: 621 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 619 Number of HSP's gapped (non-prelim): 2 length of query: 643 length of database: 41,270,998 effective HSP length: 17 effective length of query: 626 effective length of database: 40,952,469 effective search space: 25636245594 effective search space used: 25636245594 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI260732 AI260732|AI260732 LP04693.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP04693 5, mRNA sequence. (668 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4068-RB feature: mRNA loc=X:complement(4667275..4668743,466883... 438 e-122 CG4068-RA feature: mRNA loc=X:complement(4667275..4668743,466883... 438 e-122 >CG4068-RB feature: mRNA loc=X:complement(4667275..4668743,4668831..4669922, 4669988..4670679, 4676627..4676764);ID=FBan0004068;gene_id=FBgn0029738;gene _sym=CG4068;sym=CG4068;scaffold=AE003432;len=3391 Length = 3391 Score = 438 bits (221), Expect = e-122 Identities = 242/249 (97%) Strand = Plus / Plus Query: 287 gagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtag 346 ||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 2739 gagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtag 2798 Query: 347 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 406 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2799 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2858 Query: 407 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 466 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2859 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2918 Query: 467 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2919 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2978 Query: 527 ccacgcaaa 535 ||||||||| Sbjct: 2979 ccacgcaaa 2987 Score = 432 bits (218), Expect = e-120 Identities = 239/246 (97%) Strand = Plus / Plus Query: 290 ccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtagcct 349 ||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| Sbjct: 3012 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 3071 Query: 350 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 409 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3072 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 3131 Query: 410 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 469 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 3132 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 3191 Query: 470 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3192 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 3251 Query: 530 cgcaaa 535 |||||| Sbjct: 3252 cgcaaa 3257 Score = 426 bits (215), Expect = e-119 Identities = 236/243 (97%) Strand = Plus / Plus Query: 1 acagaaccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctgg 60 ||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||| Sbjct: 3006 acagaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctgg 3065 Query: 61 tagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatct 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3066 tagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatct 3125 Query: 121 taaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggag 180 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 3126 taaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggag 3185 Query: 181 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3186 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 3245 Query: 241 agt 243 ||| Sbjct: 3246 agt 3248 Score = 418 bits (211), Expect = e-116 Identities = 235/243 (96%) Strand = Plus / Plus Query: 1 acagaaccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctgg 60 ||||| |||||||||||||||| |||||||||||||||||| || |||||||||||| || Sbjct: 2736 acagagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccgg 2795 Query: 61 tagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatct 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2796 tagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatct 2855 Query: 121 taaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggag 180 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 2856 taaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggag 2915 Query: 181 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2916 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 2975 Query: 241 agt 243 ||| Sbjct: 2976 agt 2978 >CG4068-RA feature: mRNA loc=X:complement(4667275..4668743,4668831..4669922, 4669988..4670460);ID=FBan0004068;gene_id=FBgn0029738;gene _sym=CG4068;sym=CG4068;scaffold=AE003432;len=3034 Length = 3034 Score = 438 bits (221), Expect = e-122 Identities = 242/249 (97%) Strand = Plus / Plus Query: 287 gagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtag 346 ||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 2382 gagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtag 2441 Query: 347 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 406 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2442 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2501 Query: 407 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 466 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2502 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2561 Query: 467 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2562 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2621 Query: 527 ccacgcaaa 535 ||||||||| Sbjct: 2622 ccacgcaaa 2630 Score = 432 bits (218), Expect = e-120 Identities = 239/246 (97%) Strand = Plus / Plus Query: 290 ccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtagcct 349 ||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| Sbjct: 2655 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 2714 Query: 350 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 409 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2715 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 2774 Query: 410 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 469 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 2775 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 2834 Query: 470 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2835 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 2894 Query: 530 cgcaaa 535 |||||| Sbjct: 2895 cgcaaa 2900 Score = 426 bits (215), Expect = e-119 Identities = 236/243 (97%) Strand = Plus / Plus Query: 1 acagaaccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctgg 60 ||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||| Sbjct: 2649 acagaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctgg 2708 Query: 61 tagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatct 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2709 tagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatct 2768 Query: 121 taaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggag 180 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 2769 taaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggag 2828 Query: 181 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2829 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 2888 Query: 241 agt 243 ||| Sbjct: 2889 agt 2891 Score = 418 bits (211), Expect = e-116 Identities = 235/243 (96%) Strand = Plus / Plus Query: 1 acagaaccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctgg 60 ||||| |||||||||||||||| |||||||||||||||||| || |||||||||||| || Sbjct: 2379 acagagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccgg 2438 Query: 61 tagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatct 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2439 tagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatct 2498 Query: 121 taaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggag 180 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 2499 taaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggag 2558 Query: 181 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2559 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 2618 Query: 241 agt 243 ||| Sbjct: 2619 agt 2621 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,450 Number of Sequences: 18737 Number of extensions: 10450 Number of successful extensions: 233 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 207 Number of HSP's gapped (non-prelim): 20 length of query: 668 length of database: 41,270,998 effective HSP length: 17 effective length of query: 651 effective length of database: 40,952,469 effective search space: 26660057319 effective search space used: 26660057319 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI292597 AI292597|AI292597 GH15538.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH15538 5, mRNA sequence. (636 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,075 Number of Sequences: 18737 Number of extensions: 12075 Number of successful extensions: 371 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 371 Number of HSP's gapped (non-prelim): 0 length of query: 636 length of database: 41,270,998 effective HSP length: 17 effective length of query: 619 effective length of database: 40,952,469 effective search space: 25349578311 effective search space used: 25349578311 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI293246 AI293246|AI293246 GH16383.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16383 5 similar to U14101: Drosophila melanogaster TART-B1 transposon putative single-stranded nucleic acid binding protein and putative reverse transcriptase genes, complete cds. CDS:962..4093, mRNA sequence. (665 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,175 Number of Sequences: 18737 Number of extensions: 12175 Number of successful extensions: 247 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247 Number of HSP's gapped (non-prelim): 0 length of query: 665 length of database: 41,270,998 effective HSP length: 17 effective length of query: 648 effective length of database: 40,952,469 effective search space: 26537199912 effective search space used: 26537199912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI293831 AI293831|AI293831 LP07070.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07070 5, mRNA sequence. (621 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Adk1-RB feature: mRNA loc=3L:complement(12157943..12158185,12158... 1219 0.0 Adk1-RA feature: mRNA loc=3L:complement(12157943..12158185,12158... 1219 0.0 >Adk1-RB feature: mRNA loc=3L:complement(12157943..12158185,12158259..12158636, 12158921..12159043,12159326..12159409, 12161266..12161629);ID=FBan0017146;gene_id=FBgn0022709;ge ne_sym=Adk1;sym=CG17146;scaffold=AE003542;len=1192 Length = 1192 Score = 1219 bits (615), Expect = 0.0 Identities = 618/619 (99%) Strand = Plus / Minus Query: 3 tagattcagactaatttatttggtgtttcgcattcatttgtgctcagctctgagattgtg 62 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 tagatttagactaatttatttggtgtttcgcattcatttgtgctcagctctgagattgtg 1121 Query: 63 tgtttcgcgctaaaaagtgcactagaaatgttgactttggtaccggtttcctaatggatt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 tgtttcgcgctaaaaagtgcactagaaatgttgactttggtaccggtttcctaatggatt 1061 Query: 123 agcattctactagcactgggcggcggcattctgctgcttcttcttcagcacacagtcaat 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1060 agcattctactagcactgggcggcggcattctgctgcttcttcttcagcacacagtcaat 1001 Query: 183 ggcctggacgacttccagaaagatgtcgtccacgtcacgctcggcattgatcgtaagggt 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1000 ggcctggacgacttccagaaagatgtcgtccacgtcacgctcggcattgatcgtaagggt 941 Query: 243 tttgggctcataaagttccaaaattgcattggtgttctgcttgaaggtcaggaggcgtgc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 tttgggctcataaagttccaaaattgcattggtgttctgcttgaaggtcaggaggcgtgc 881 Query: 303 cctaatggtcttctcgttgtcatcgtcccgtttcaccgccgaggcagcggcacgtgccat 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 cctaatggtcttctcgttgtcatcgtcccgtttcaccgccgaggcagcggcacgtgccat 821 Query: 363 gatgcgctgcaccatcgtgtcctcggagcactcaaagtacagcgccagatcggcgggtgc 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 820 gatgcgctgcaccatcgtgtcctcggagcactcaaagtacagcgccagatcggcgggtgc 761 Query: 423 aatgcgcgcctcgaactcaatgccctggttcttctgacgcggatatccatcgatgaggaa 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 aatgcgcgcctcgaactcaatgccctggttcttctgacgcggatatccatcgatgaggaa 701 Query: 483 tcccttcgagctacccttggcccgcgtgatggcgtcgttcagcagggacagcacctcgtc 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 tcccttcgagctacccttggcccgcgtgatggcgtcgttcagcagggacagcacctcgtc 641 Query: 543 gttggacaccaggccaccgctggccatcacagcctgcagctgacgacccttgtccgatcc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 gttggacaccaggccaccgctggccatcacagcctgcagctgacgacccttgtccgatcc 581 Query: 603 agaagccacctcattgcgc 621 ||||||||||||||||||| Sbjct: 580 agaagccacctcattgcgc 562 >Adk1-RA feature: mRNA loc=3L:complement(12157943..12158185,12158259..12158636, 12158921..12159043, 12161266..12161629);ID=FBan0017146;gene_id=FBgn0022709;ge ne_sym=Adk1;sym=CG17146;scaffold=AE003542;len=1108 Length = 1108 Score = 1219 bits (615), Expect = 0.0 Identities = 618/619 (99%) Strand = Plus / Minus Query: 3 tagattcagactaatttatttggtgtttcgcattcatttgtgctcagctctgagattgtg 62 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 tagatttagactaatttatttggtgtttcgcattcatttgtgctcagctctgagattgtg 1037 Query: 63 tgtttcgcgctaaaaagtgcactagaaatgttgactttggtaccggtttcctaatggatt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 tgtttcgcgctaaaaagtgcactagaaatgttgactttggtaccggtttcctaatggatt 977 Query: 123 agcattctactagcactgggcggcggcattctgctgcttcttcttcagcacacagtcaat 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 agcattctactagcactgggcggcggcattctgctgcttcttcttcagcacacagtcaat 917 Query: 183 ggcctggacgacttccagaaagatgtcgtccacgtcacgctcggcattgatcgtaagggt 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 ggcctggacgacttccagaaagatgtcgtccacgtcacgctcggcattgatcgtaagggt 857 Query: 243 tttgggctcataaagttccaaaattgcattggtgttctgcttgaaggtcaggaggcgtgc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 856 tttgggctcataaagttccaaaattgcattggtgttctgcttgaaggtcaggaggcgtgc 797 Query: 303 cctaatggtcttctcgttgtcatcgtcccgtttcaccgccgaggcagcggcacgtgccat 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 796 cctaatggtcttctcgttgtcatcgtcccgtttcaccgccgaggcagcggcacgtgccat 737 Query: 363 gatgcgctgcaccatcgtgtcctcggagcactcaaagtacagcgccagatcggcgggtgc 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 736 gatgcgctgcaccatcgtgtcctcggagcactcaaagtacagcgccagatcggcgggtgc 677 Query: 423 aatgcgcgcctcgaactcaatgccctggttcttctgacgcggatatccatcgatgaggaa 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 676 aatgcgcgcctcgaactcaatgccctggttcttctgacgcggatatccatcgatgaggaa 617 Query: 483 tcccttcgagctacccttggcccgcgtgatggcgtcgttcagcagggacagcacctcgtc 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 tcccttcgagctacccttggcccgcgtgatggcgtcgttcagcagggacagcacctcgtc 557 Query: 543 gttggacaccaggccaccgctggccatcacagcctgcagctgacgacccttgtccgatcc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 gttggacaccaggccaccgctggccatcacagcctgcagctgacgacccttgtccgatcc 497 Query: 603 agaagccacctcattgcgc 621 ||||||||||||||||||| Sbjct: 496 agaagccacctcattgcgc 478 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,698 Number of Sequences: 18737 Number of extensions: 17698 Number of successful extensions: 516 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 514 Number of HSP's gapped (non-prelim): 2 length of query: 621 length of database: 41,270,998 effective HSP length: 17 effective length of query: 604 effective length of database: 40,952,469 effective search space: 24735291276 effective search space used: 24735291276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI294727 AI294727|AI294727 LP08165.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP08165 5, mRNA sequence. (670 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32697-RC feature: mRNA loc=X:complement(9367683..9368316,93683... 769 0.0 CG32697-RB feature: mRNA loc=X:complement(9367683..9368316,93683... 769 0.0 CG32697-RA feature: mRNA loc=X:complement(9367683..9368316,93683... 769 0.0 >CG32697-RC feature: mRNA loc=X:complement(9367683..9368316,9368380..9368587, 9368652..9368881,9368947..9369107,9369178..9370079, 9382641..9382871,9382941..9383351, 9397831..9397898);ID=FBan0032697;gene_id=FBgn0052697;gen e_sym=CG32697;sym=CG32697;scaffold=AE003448;len=2845 Length = 2845 Score = 769 bits (388), Expect = 0.0 Identities = 388/388 (100%) Strand = Plus / Minus Query: 1 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 615 Query: 61 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 555 Query: 121 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 495 Query: 181 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 435 Query: 241 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 375 Query: 301 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 315 Query: 361 atgcgagatgtggcgcctcacaggcgca 388 |||||||||||||||||||||||||||| Sbjct: 314 atgcgagatgtggcgcctcacaggcgca 287 >CG32697-RB feature: mRNA loc=X:complement(9367683..9368316,9368380..9368587, 9368652..9368881,9368947..9369107,9369178..9370079, 9382641..9382871,9382941..9383351, 9384695..9384889);ID=FBan0032697;gene_id=FBgn0052697;gen e_sym=CG32697;sym=CG32697;scaffold=AE003448;len=2972 Length = 2972 Score = 769 bits (388), Expect = 0.0 Identities = 388/388 (100%) Strand = Plus / Minus Query: 1 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 801 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 742 Query: 61 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 682 Query: 121 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 622 Query: 181 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 562 Query: 241 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 502 Query: 301 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 442 Query: 361 atgcgagatgtggcgcctcacaggcgca 388 |||||||||||||||||||||||||||| Sbjct: 441 atgcgagatgtggcgcctcacaggcgca 414 >CG32697-RA feature: mRNA loc=X:complement(9367683..9368316,9368380..9368587, 9368652..9368881,9368947..9369107,9369178..9370079, 9382641..9382871,9382941..9383351, 9389469..9389741);ID=FBan0032697;gene_id=FBgn0052697;gen e_sym=CG32697;sym=CG32697;scaffold=AE003448;len=3050 Length = 3050 Score = 769 bits (388), Expect = 0.0 Identities = 388/388 (100%) Strand = Plus / Minus Query: 1 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 879 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 820 Query: 61 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 819 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 760 Query: 121 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 700 Query: 181 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 699 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 640 Query: 241 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 580 Query: 301 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 520 Query: 361 atgcgagatgtggcgcctcacaggcgca 388 |||||||||||||||||||||||||||| Sbjct: 519 atgcgagatgtggcgcctcacaggcgca 492 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 49,152 Number of Sequences: 18737 Number of extensions: 49152 Number of successful extensions: 4923 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4917 Number of HSP's gapped (non-prelim): 6 length of query: 670 length of database: 41,270,998 effective HSP length: 17 effective length of query: 653 effective length of database: 40,952,469 effective search space: 26741962257 effective search space used: 26741962257 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI295815 AI295815|AI295815 LP09564.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP09564 5, mRNA sequence. (683 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,803 Number of Sequences: 18737 Number of extensions: 13803 Number of successful extensions: 357 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 357 Number of HSP's gapped (non-prelim): 0 length of query: 683 length of database: 41,270,998 effective HSP length: 17 effective length of query: 666 effective length of database: 40,952,469 effective search space: 27274344354 effective search space used: 27274344354 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI296043 AI296043|AI296043 LP09838.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP09838 5, mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,186 Number of Sequences: 18737 Number of extensions: 10186 Number of successful extensions: 204 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 204 Number of HSP's gapped (non-prelim): 0 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI297441 AI297441|AI297441 LP11739.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP11739 5, mRNA sequence. (680 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,029 Number of Sequences: 18737 Number of extensions: 14029 Number of successful extensions: 330 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 330 Number of HSP's gapped (non-prelim): 0 length of query: 680 length of database: 41,270,998 effective HSP length: 17 effective length of query: 663 effective length of database: 40,952,469 effective search space: 27151486947 effective search space used: 27151486947 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI297668 AI297668|AI297668 LP12023.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP12023 5, mRNA sequence. (311 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9231 Number of Sequences: 18737 Number of extensions: 9231 Number of successful extensions: 760 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 760 Number of HSP's gapped (non-prelim): 0 length of query: 311 length of database: 41,270,998 effective HSP length: 16 effective length of query: 295 effective length of database: 40,971,206 effective search space: 12086505770 effective search space used: 12086505770 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI387469 AI387469|AI387469 GH18009.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18009 5 similar to Ca-alpha1T: FBan0004222 GO:[] located on: X 5D2-5D3;: 08/13/2002, mRNA sequence. (644 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Ca-alpha1T-RB feature: mRNA loc=X:complement(5847429..5848337,58... 1277 0.0 >Ca-alpha1T-RB feature: mRNA loc=X:complement(5847429..5848337,5848406..5850322, 5852050..5852199,5852304..5852496,5852797..5854160, 5854248..5854409,5854485..5854775,5854978..5855160, 5855793..5855948,5860611..5860725,5863765..5863974, 5864070..5864977,5865133..5865471,5866328..5866351, 5866621..5867233,5868754..5868995,5870940..5871032, 5872180..5872334,5872568..5872689,5878163..5878337, 5878400..5878631,5879982..5880093, 5885641..5885764);ID=FBan0015899;gene_id=FBgn0029846;gene _sym=Ca-alpha1T;sym=CG15899;scaffold=AE003436;len=8789 Length = 8789 Score = 1277 bits (644), Expect = 0.0 Identities = 644/644 (100%) Strand = Plus / Minus Query: 1 cagattcaggtgcgaagtcttgctgaacgcaagttcgatggagctcatccttcgttgccc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5162 cagattcaggtgcgaagtcttgctgaacgcaagttcgatggagctcatccttcgttgccc 5103 Query: 61 ggaccctggacgcagtttgggcggttgatttagattctgatagacctgcgagttgaaaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5102 ggaccctggacgcagtttgggcggttgatttagattctgatagacctgcgagttgaaaat 5043 Query: 121 gcaagccgatgcccgacgactgcccaccggtccgctgcctatactcagtgtattggataa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5042 gcaagccgatgcccgacgactgcccaccggtccgctgcctatactcagtgtattggataa 4983 Query: 181 ccttcgtatggagttttgtggactcaggcgattggtctccttggtgccggaggaggaacc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4982 ccttcgtatggagttttgtggactcaggcgattggtctccttggtgccggaggaggaacc 4923 Query: 241 gctgaccacagcgttgctgtttctcagcaaacagctgttatcgccgccattgttcagctg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4922 gctgaccacagcgttgctgtttctcagcaaacagctgttatcgccgccattgttcagctg 4863 Query: 301 ctgctgttcttcctcctcgtcctgggtccttcgagcctgattatccagcgttcttcgagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4862 ctgctgttcttcctcctcgtcctgggtccttcgagcctgattatccagcgttcttcgagc 4803 Query: 361 cggattgtcgtctgtggccagggccaaagcggaggcacgtcgctttttggagctaccgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4802 cggattgtcgtctgtggccagggccaaagcggaggcacgtcgctttttggagctaccgcg 4743 Query: 421 ccgtaagcgctgcttaaaactcccctgctgaggaggtggagccaatggcaggcgctcgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4742 ccgtaagcgctgcttaaaactcccctgctgaggaggtggagccaatggcaggcgctcgct 4683 Query: 481 ggacgaacttccactggtcgaggctcccgtgttggcattcctgctcattcccgttgcggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4682 ggacgaacttccactggtcgaggctcccgtgttggcattcctgctcattcccgttgcggg 4623 Query: 541 aatctcacctcctggactggagcccacacttacatcgttgagactgtgactctggctctg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4622 aatctcacctcctggactggagcccacacttacatcgttgagactgtgactctggctctg 4563 Query: 601 cgcgtccgctgtggacgagatggtgggcacataaatgggcgtag 644 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4562 cgcgtccgctgtggacgagatggtgggcacataaatgggcgtag 4519 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,856 Number of Sequences: 18737 Number of extensions: 21856 Number of successful extensions: 546 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 545 Number of HSP's gapped (non-prelim): 1 length of query: 644 length of database: 41,270,998 effective HSP length: 17 effective length of query: 627 effective length of database: 40,952,469 effective search space: 25677198063 effective search space used: 25677198063 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI389591 AI389591|AI389591 GH20809.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20809 5, mRNA sequence. (628 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,352 Number of Sequences: 18737 Number of extensions: 12352 Number of successful extensions: 194 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 194 Number of HSP's gapped (non-prelim): 0 length of query: 628 length of database: 41,270,998 effective HSP length: 17 effective length of query: 611 effective length of database: 40,952,469 effective search space: 25021958559 effective search space used: 25021958559 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI402854 AI402854|AI402854 GH22170.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22170 5, mRNA sequence. (642 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,340 Number of Sequences: 18737 Number of extensions: 15340 Number of successful extensions: 489 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 489 Number of HSP's gapped (non-prelim): 0 length of query: 642 length of database: 41,270,998 effective HSP length: 17 effective length of query: 625 effective length of database: 40,952,469 effective search space: 25595293125 effective search space used: 25595293125 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI403679 AI403679|AI403679 GH23165.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23165 5, mRNA sequence. (668 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9171 Number of Sequences: 18737 Number of extensions: 9171 Number of successful extensions: 200 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 200 Number of HSP's gapped (non-prelim): 0 length of query: 668 length of database: 41,270,998 effective HSP length: 17 effective length of query: 651 effective length of database: 40,952,469 effective search space: 26660057319 effective search space used: 26660057319 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI404127 AI404127|AI404127 GH23730.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23730 5, mRNA sequence. (697 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,577 Number of Sequences: 18737 Number of extensions: 15577 Number of successful extensions: 344 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 344 Number of HSP's gapped (non-prelim): 0 length of query: 697 length of database: 41,270,998 effective HSP length: 17 effective length of query: 680 effective length of database: 40,952,469 effective search space: 27847678920 effective search space used: 27847678920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI405247 AI405247|AI405247 GH25188.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25188 5, mRNA sequence. (742 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,180 Number of Sequences: 18737 Number of extensions: 23180 Number of successful extensions: 753 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 753 Number of HSP's gapped (non-prelim): 0 length of query: 742 length of database: 41,270,998 effective HSP length: 17 effective length of query: 725 effective length of database: 40,952,469 effective search space: 29690540025 effective search space used: 29690540025 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI405488 AI405488|AI405488 GH25505.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25505 5, mRNA sequence. (819 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,456 Number of Sequences: 18737 Number of extensions: 16456 Number of successful extensions: 419 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 419 Number of HSP's gapped (non-prelim): 0 length of query: 819 length of database: 41,270,998 effective HSP length: 17 effective length of query: 802 effective length of database: 40,952,469 effective search space: 32843880138 effective search space used: 32843880138 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI405508 AI405508|AI405508 GH25527.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25527 5, mRNA sequence. (677 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,296 Number of Sequences: 18737 Number of extensions: 11296 Number of successful extensions: 208 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 208 Number of HSP's gapped (non-prelim): 0 length of query: 677 length of database: 41,270,998 effective HSP length: 17 effective length of query: 660 effective length of database: 40,952,469 effective search space: 27028629540 effective search space used: 27028629540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI405663 AI405663|AI405663 GH25761.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25761 5, mRNA sequence. (635 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,311 Number of Sequences: 18737 Number of extensions: 13311 Number of successful extensions: 356 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 356 Number of HSP's gapped (non-prelim): 0 length of query: 635 length of database: 41,270,998 effective HSP length: 17 effective length of query: 618 effective length of database: 40,952,469 effective search space: 25308625842 effective search space used: 25308625842 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI455102 AI455102|AI455102 LD21171.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21171 3 similar to DM_YOYO: emb|DM_YOYO, mRNA sequence. (502 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9532 Number of Sequences: 18737 Number of extensions: 9532 Number of successful extensions: 231 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 231 Number of HSP's gapped (non-prelim): 0 length of query: 502 length of database: 41,270,998 effective HSP length: 17 effective length of query: 485 effective length of database: 40,952,469 effective search space: 19861947465 effective search space used: 19861947465 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI455402 AI455402|AI455402 LD23922.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD23922 3, mRNA sequence. (603 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,623 Number of Sequences: 18737 Number of extensions: 10623 Number of successful extensions: 203 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 203 Number of HSP's gapped (non-prelim): 0 length of query: 603 length of database: 41,270,998 effective HSP length: 17 effective length of query: 586 effective length of database: 40,952,469 effective search space: 23998146834 effective search space used: 23998146834 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI513563 AI513563|AI513563 GH26692.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH26692 5, mRNA sequence. (832 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 32,878 Number of Sequences: 18737 Number of extensions: 32878 Number of successful extensions: 968 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 968 Number of HSP's gapped (non-prelim): 0 length of query: 832 length of database: 41,270,998 effective HSP length: 17 effective length of query: 815 effective length of database: 40,952,469 effective search space: 33376262235 effective search space used: 33376262235 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI513925 AI513925|AI513925 LD45965.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD45965 5, mRNA sequence. (620 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,730 Number of Sequences: 18737 Number of extensions: 12730 Number of successful extensions: 256 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 256 Number of HSP's gapped (non-prelim): 0 length of query: 620 length of database: 41,270,998 effective HSP length: 17 effective length of query: 603 effective length of database: 40,952,469 effective search space: 24694338807 effective search space used: 24694338807 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI514132 AI514132|AI514132 GH27201.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH27201 5, mRNA sequence. (701 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31916-RA feature: mRNA loc=2L:join(5151029..5178535,5178585..5... 1342 0.0 >CG31916-RA feature: mRNA loc=2L:join(5151029..5178535, 5178585..5178782);ID=FBan0031916;gene_id=FBgn0051916;gene _sym=CG31916;sym=CG31916;scaffold=AE003608;len=27705 Length = 27705 Score = 1342 bits (677), Expect = 0.0 Identities = 683/685 (99%) Strand = Plus / Minus Query: 17 cgactgtttcttttcctttttcgaagaagtaggagaagttggttgttcttgtacttgaga 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3171 cgactgtttcttttcctttttcgaagaagtaggagaagttggttgttcttgtacttgaga 3112 Query: 77 aacatcggttgtttcaatcacagttggcgttactacctccttttcgataacaatctcagt 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3111 aacatcggttgtttcaatcacagttggcgttactacctccttttcgataacaatctcagt 3052 Query: 137 tggcttctttatcacttctggctcaacaactgtcttgttctttttcttgtccttcttcga 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3051 tggcttctttatcacttctggctcaacaactgtcttgttctttttcttgtccttcttcga 2992 Query: 197 aggcgctgccggtgttacagactttgctaactctgcgtcctcagtaacgactggttggag 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2991 aggcgctgccggtgttacagactttgctaactctgcgtcctcagtaacgactggttggag 2932 Query: 257 aaccttcttttcaactaccgtttcgaccacagatttagtttgctttacttgtgtctttgg 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2931 aaccttcttttcaactaccgtttcgaccacagatttagtttgctttacttgtgtctttgg 2872 Query: 317 aacatcagctggcttagaagtctccttttcaattaatggttcgttcctgatggtagtttc 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2871 aacatcagctggcttagaagtctccttttcaattaatggttcgttcctgatggtagtttc 2812 Query: 377 aacattcttaacaactgtcttgacttgtttcttctcttttctggttggggcaactggtga 436 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2811 aacattcttaacaactgtcttgacttgtttcttctcttttctggttggagcaactggtga 2752 Query: 437 aacttcaagaactggttcatctgactgaggagtttccttttccttgaccggcttgtgttt 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2751 aacttcaagaactggttcatctgactgaggagtttccttttccttgaccggcttgtgttt 2692 Query: 497 cttttctctcttcgagggaactggaactggttctactggctcaacagatggttcaacggt 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2691 cttttctctcttcgagggaactggaactggttctactggctcaacagatggttcaacggt 2632 Query: 557 tttctttatcacagatttttcgaccacagtttcctttttccctacagagggaaggaccga 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2631 tttctttatcacagatttttcgaccacagtttcctttttccctacagagggaaggaccga 2572 Query: 617 ttgcgtatctctcttagatggcacggaaatatcgacggctgattcaaccacattatcagt 676 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2571 ttgcgtatctttcttagatggcacggaaatatcgacggctgattcaaccacattatcagt 2512 Query: 677 agtagtcttcttagacttcttcgat 701 ||||||||||||||||||||||||| Sbjct: 2511 agtagtcttcttagacttcttcgat 2487 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,829 Number of Sequences: 18737 Number of extensions: 14829 Number of successful extensions: 383 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 379 Number of HSP's gapped (non-prelim): 4 length of query: 701 length of database: 41,270,998 effective HSP length: 17 effective length of query: 684 effective length of database: 40,952,469 effective search space: 28011488796 effective search space used: 28011488796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI514969 AI514969|AI514969 LD46618.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD46618 5 similar to X77571: D.melanogaster genomic DNA BS transposable element, mRNA sequence. (622 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,541 Number of Sequences: 18737 Number of extensions: 12541 Number of successful extensions: 243 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 243 Number of HSP's gapped (non-prelim): 0 length of query: 622 length of database: 41,270,998 effective HSP length: 17 effective length of query: 605 effective length of database: 40,952,469 effective search space: 24776243745 effective search space used: 24776243745 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI531126 AI531126|AI531126 SD02026.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD02026 5 similar to Z27119: D.melanogaster (Oregon R) gene for blastopia polyprotein, mRNA sequence. (591 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,008 Number of Sequences: 18737 Number of extensions: 11008 Number of successful extensions: 280 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 280 Number of HSP's gapped (non-prelim): 0 length of query: 591 length of database: 41,270,998 effective HSP length: 17 effective length of query: 574 effective length of database: 40,952,469 effective search space: 23506717206 effective search space used: 23506717206 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI531418 AI531418|AI531418 SD02447.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD02447 5, mRNA sequence. (490 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,060 Number of Sequences: 18737 Number of extensions: 10060 Number of successful extensions: 167 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 167 Number of HSP's gapped (non-prelim): 0 length of query: 490 length of database: 41,270,998 effective HSP length: 17 effective length of query: 473 effective length of database: 40,952,469 effective search space: 19370517837 effective search space used: 19370517837 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI531441 AI531441|AI531441 SD02481.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD02481 5, mRNA sequence. (656 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 62,322 Number of Sequences: 18737 Number of extensions: 62322 Number of successful extensions: 13975 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13975 Number of HSP's gapped (non-prelim): 0 length of query: 656 length of database: 41,270,998 effective HSP length: 17 effective length of query: 639 effective length of database: 40,952,469 effective search space: 26168627691 effective search space used: 26168627691 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI531861 AI531861|AI531861 SD03144.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD03144 5, mRNA sequence. (568 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,729 Number of Sequences: 18737 Number of extensions: 12729 Number of successful extensions: 263 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 263 Number of HSP's gapped (non-prelim): 0 length of query: 568 length of database: 41,270,998 effective HSP length: 17 effective length of query: 551 effective length of database: 40,952,469 effective search space: 22564810419 effective search space used: 22564810419 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI531985 AI531985|AI531985 SD03311.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD03311 5 similar to X93507: D.melanogaster retrotransposon Tirant, mRNA sequence. (579 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,243 Number of Sequences: 18737 Number of extensions: 13243 Number of successful extensions: 282 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 282 Number of HSP's gapped (non-prelim): 0 length of query: 579 length of database: 41,270,998 effective HSP length: 17 effective length of query: 562 effective length of database: 40,952,469 effective search space: 23015287578 effective search space used: 23015287578 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI532822 AI532822|AI532822 SD04448.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04448 5 similar to AJ002729: Drosophila melanogaster ketel gene, mRNA sequence. (588 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,844 Number of Sequences: 18737 Number of extensions: 10844 Number of successful extensions: 207 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 207 Number of HSP's gapped (non-prelim): 0 length of query: 588 length of database: 41,270,998 effective HSP length: 17 effective length of query: 571 effective length of database: 40,952,469 effective search space: 23383859799 effective search space used: 23383859799 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI532859 AI532859|AI532859 SD04493.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04493 5 similar to CG14704: FBan0014704 'defense/immunity protein' located on: 3R 86E7-86E7;: 04/13/2001, mRNA sequence. (702 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value PGRP-LB-RC feature: mRNA loc=3R:complement(7278581..7279039,7279... 797 0.0 PGRP-LB-RB feature: mRNA loc=3R:complement(7278581..7279039,7279... 797 0.0 PGRP-LB-RA feature: mRNA loc=3R:complement(7278581..7279039,7279... 797 0.0 >PGRP-LB-RC feature: mRNA loc=3R:complement(7278581..7279039,7279192..7279560, 7283326..7283760);ID=FBan0014704;gene_id=FBgn0037906;gene _sym=PGRP-LB;sym=CG14704;scaffold=AE003691;len=1263 Length = 1263 Score = 797 bits (402), Expect = 0.0 Identities = 408/410 (99%) Strand = Plus / Minus Query: 293 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1263 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 1204 Query: 353 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1203 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 1144 Query: 413 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1143 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 1084 Query: 473 cacgtggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 532 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1083 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 1024 Query: 533 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1023 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 964 Query: 593 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 963 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 904 Query: 653 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaag 702 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 903 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaag 854 >PGRP-LB-RB feature: mRNA loc=3R:complement(7278581..7279039,7279192..7279560, 7279822..7280098);ID=FBan0014704;gene_id=FBgn0037906;gene _sym=PGRP-LB;sym=CG14704;scaffold=AE003691;len=1105 Length = 1105 Score = 797 bits (402), Expect = 0.0 Identities = 408/410 (99%) Strand = Plus / Minus Query: 293 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 1046 Query: 353 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1045 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 986 Query: 413 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 985 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 926 Query: 473 cacgtggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 532 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 925 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 866 Query: 533 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 865 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 806 Query: 593 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 805 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 746 Query: 653 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaag 702 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 745 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaag 696 >PGRP-LB-RA feature: mRNA loc=3R:complement(7278581..7279039,7279192..7279560, 7279761..7280069);ID=FBan0014704;gene_id=FBgn0037906;gene _sym=PGRP-LB;sym=CG14704;scaffold=AE003691;len=1137 Length = 1137 Score = 797 bits (402), Expect = 0.0 Identities = 408/410 (99%) Strand = Plus / Minus Query: 293 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1137 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 1078 Query: 353 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1077 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 1018 Query: 413 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1017 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 958 Query: 473 cacgtggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 532 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 957 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 898 Query: 533 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 897 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 838 Query: 593 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 837 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 778 Query: 653 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaag 702 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 777 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaag 728 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,250 Number of Sequences: 18737 Number of extensions: 17250 Number of successful extensions: 424 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 421 Number of HSP's gapped (non-prelim): 3 length of query: 702 length of database: 41,270,998 effective HSP length: 17 effective length of query: 685 effective length of database: 40,952,469 effective search space: 28052441265 effective search space used: 28052441265 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI532961 AI532961|AI532961 SD04624.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04624 5, mRNA sequence. (533 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,789 Number of Sequences: 18737 Number of extensions: 15789 Number of successful extensions: 480 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 480 Number of HSP's gapped (non-prelim): 0 length of query: 533 length of database: 41,270,998 effective HSP length: 17 effective length of query: 516 effective length of database: 40,952,469 effective search space: 21131474004 effective search space used: 21131474004 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI533054 AI533054|AI533054 SD04739.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04739 5, mRNA sequence. (574 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,158 Number of Sequences: 18737 Number of extensions: 12158 Number of successful extensions: 283 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 283 Number of HSP's gapped (non-prelim): 0 length of query: 574 length of database: 41,270,998 effective HSP length: 17 effective length of query: 557 effective length of database: 40,952,469 effective search space: 22810525233 effective search space used: 22810525233 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI533523 AI533523|AI533523 SD05379.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD05379 5, mRNA sequence. (612 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,138 Number of Sequences: 18737 Number of extensions: 12138 Number of successful extensions: 252 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 252 Number of HSP's gapped (non-prelim): 0 length of query: 612 length of database: 41,270,998 effective HSP length: 17 effective length of query: 595 effective length of database: 40,952,469 effective search space: 24366719055 effective search space used: 24366719055 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI534103 AI534103|AI534103 SD06617.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD06617 5, mRNA sequence. (614 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,814 Number of Sequences: 18737 Number of extensions: 11814 Number of successful extensions: 227 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 227 Number of HSP's gapped (non-prelim): 0 length of query: 614 length of database: 41,270,998 effective HSP length: 17 effective length of query: 597 effective length of database: 40,952,469 effective search space: 24448623993 effective search space used: 24448623993 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI541761 AI541761|AI541761 SD06908.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD06908 5 similar to BLOOD: emb|BLOOD, mRNA sequence. (566 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,096 Number of Sequences: 18737 Number of extensions: 10096 Number of successful extensions: 205 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 205 Number of HSP's gapped (non-prelim): 0 length of query: 566 length of database: 41,270,998 effective HSP length: 17 effective length of query: 549 effective length of database: 40,952,469 effective search space: 22482905481 effective search space used: 22482905481 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI541849 AI541849|AI541849 SD07683.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD07683 5, mRNA sequence. (607 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,579 Number of Sequences: 18737 Number of extensions: 14579 Number of successful extensions: 371 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 371 Number of HSP's gapped (non-prelim): 0 length of query: 607 length of database: 41,270,998 effective HSP length: 17 effective length of query: 590 effective length of database: 40,952,469 effective search space: 24161956710 effective search space used: 24161956710 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI542416 AI542416|AI542416 SD08734.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD08734 5 similar to X03431: Drosophila melanogaster transposable element 297, mRNA sequence. (666 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,866 Number of Sequences: 18737 Number of extensions: 10866 Number of successful extensions: 210 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 210 Number of HSP's gapped (non-prelim): 0 length of query: 666 length of database: 41,270,998 effective HSP length: 17 effective length of query: 649 effective length of database: 40,952,469 effective search space: 26578152381 effective search space used: 26578152381 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI542417 AI542417|AI542417 SD08735.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD08735 5, mRNA sequence. (637 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,034 Number of Sequences: 18737 Number of extensions: 15034 Number of successful extensions: 348 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 348 Number of HSP's gapped (non-prelim): 0 length of query: 637 length of database: 41,270,998 effective HSP length: 17 effective length of query: 620 effective length of database: 40,952,469 effective search space: 25390530780 effective search space used: 25390530780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI542934 AI542934|AI542934 SD09455.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD09455 5, mRNA sequence. (650 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31044-RA feature: mRNA loc=3R:25032002..25034755;ID=FBan003104... 908 0.0 >CG31044-RA feature: mRNA loc=3R:25032002..25034755;ID=FBan0031044;gene_id=FBgn005 1044;gene_sym=CG31044;sym=CG31044;scaffold=AE003768;len= 2754 Length = 2754 Score = 908 bits (458), Expect = 0.0 Identities = 464/466 (99%) Strand = Plus / Plus Query: 185 tgccacagaaagtcgtgcaggggcaataatcatcatccgggcgagaaaggagcccaatag 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 tgccacagaaagtcgtgcaggggcaataatcatcatccgggcgagaaaggagcccaatag 244 Query: 245 tggggatatggggaaggatgctcttttctgactctattttgtcggcgaacatggatctag 304 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 tggggatgtggggaaggatgctcttttctgactctattttgtcggcgaacatggatctag 304 Query: 305 tgcacggtggttcatgattaagttcgtgactagatttcatgctcgtctattaagttgggt 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 tgcacggtggttcatgattaagttcgtgactagatttcatgctcgtctattaagttgggt 364 Query: 365 cagcacaacgaagagagcggagctttccatctcgcggggatcggagggagtcgttttcca 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 cagcacaacgaagagagcggagctttccatctcgcggggatcggagggagtcgttttcca 424 Query: 425 acccaacccctccggctgatttggccaattagccaaacgcattaattatgggaaaagtat 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 acccaacccctccggctgatttggccaattagccaaacgcattaattatgggaaaagtat 484 Query: 485 atttgattgacccgtgacccacatcgagtggcacacgccccgcagcagcagcaactaccg 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 atttgattgacccgtgacccacatcgagtggcacacgccccgcagcagcagcaactaccg 544 Query: 545 aaaaatgagggcgtgttgcaagatactcgtagcaagcgccaagcaccactacatggagtc 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 aaaaatgagggcgtgttgcaagatactcgtagcaagcgccaagcaccactacatggagtc 604 Query: 605 aatggcctgctgtcccgcatgctgcacatgcgctcactccgggaaa 650 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 605 aatggcctgctgtcccgcatgctgcacatgcgctcagtccgggaaa 650 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,215 Number of Sequences: 18737 Number of extensions: 27215 Number of successful extensions: 2462 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2458 Number of HSP's gapped (non-prelim): 4 length of query: 650 length of database: 41,270,998 effective HSP length: 17 effective length of query: 633 effective length of database: 40,952,469 effective search space: 25922912877 effective search space used: 25922912877 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI543660 AI543660|AI543660 SD10530.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD10530 5, mRNA sequence. (594 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,745 Number of Sequences: 18737 Number of extensions: 13745 Number of successful extensions: 385 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 385 Number of HSP's gapped (non-prelim): 0 length of query: 594 length of database: 41,270,998 effective HSP length: 17 effective length of query: 577 effective length of database: 40,952,469 effective search space: 23629574613 effective search space used: 23629574613 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AI544438 AI544438|AI544438 SD10988.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD10988 5, mRNA sequence. (505 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,006 Number of Sequences: 18737 Number of extensions: 21006 Number of successful extensions: 704 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 704 Number of HSP's gapped (non-prelim): 0 length of query: 505 length of database: 41,270,998 effective HSP length: 17 effective length of query: 488 effective length of database: 40,952,469 effective search space: 19984804872 effective search space used: 19984804872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940054 AW940054|AW940054 GH01566.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH01566 3, mRNA sequence. (712 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,026 Number of Sequences: 18737 Number of extensions: 11026 Number of successful extensions: 228 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 228 Number of HSP's gapped (non-prelim): 0 length of query: 712 length of database: 41,270,998 effective HSP length: 17 effective length of query: 695 effective length of database: 40,952,469 effective search space: 28461965955 effective search space used: 28461965955 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940072 AW940072|AW940072 GH01976.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH01976 3, mRNA sequence. (773 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Rgk1-RA feature: mRNA loc=2R:complement(14375862..14376434,14376... 383 e-105 >Rgk1-RA feature: mRNA loc=2R:complement(14375862..14376434,14376505..14376645, 14376715..14376850,14378281..14378473,14378967..14379058, 14381262..14381356,14381793..14382059,14382119..14382220, 14382405..14382517,14383104..14383406, 14388918..14389209);ID=FBan0009811;gene_id=FBgn0034434;ge ne_sym=Rgk1;sym=CG9811;scaffold=AE003796;len=2307 Length = 2307 Score = 383 bits (193), Expect = e-105 Identities = 193/193 (100%) Strand = Plus / Plus Query: 332 ccggatgagtgcctgaccaactacgatccgcacggttactgcgtcatctattcggccgcg 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1265 ccggatgagtgcctgaccaactacgatccgcacggttactgcgtcatctattcggccgcg 1324 Query: 392 gacaggagcagcttcagtgtggcggagcaggtgctgcaggtgctctggaccaatcagaac 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1325 gacaggagcagcttcagtgtggcggagcaggtgctgcaggtgctctggaccaatcagaac 1384 Query: 452 atcgcccagaaggcagtcattctagtatcgaacaaggccgacctggccaggagtcgactg 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1385 atcgcccagaaggcagtcattctagtatcgaacaaggccgacctggccaggagtcgactg 1444 Query: 512 gtcacctctgaag 524 ||||||||||||| Sbjct: 1445 gtcacctctgaag 1457 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,819 Number of Sequences: 18737 Number of extensions: 18819 Number of successful extensions: 623 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 622 Number of HSP's gapped (non-prelim): 1 length of query: 773 length of database: 41,270,998 effective HSP length: 17 effective length of query: 756 effective length of database: 40,952,469 effective search space: 30960066564 effective search space used: 30960066564 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940128 AW940128|AW940128 GH03275.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03275 3, mRNA sequence. (680 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,220 Number of Sequences: 18737 Number of extensions: 15220 Number of successful extensions: 373 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 373 Number of HSP's gapped (non-prelim): 0 length of query: 680 length of database: 41,270,998 effective HSP length: 17 effective length of query: 663 effective length of database: 40,952,469 effective search space: 27151486947 effective search space used: 27151486947 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940190 AW940190|AW940190 GH05108.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05108 3, mRNA sequence. (436 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9215 Number of Sequences: 18737 Number of extensions: 9215 Number of successful extensions: 859 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 859 Number of HSP's gapped (non-prelim): 0 length of query: 436 length of database: 41,270,998 effective HSP length: 17 effective length of query: 419 effective length of database: 40,952,469 effective search space: 17159084511 effective search space used: 17159084511 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940205 AW940205|AW940205 GH05702.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05702 3, mRNA sequence. (753 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,439 Number of Sequences: 18737 Number of extensions: 12439 Number of successful extensions: 289 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 289 Number of HSP's gapped (non-prelim): 0 length of query: 753 length of database: 41,270,998 effective HSP length: 17 effective length of query: 736 effective length of database: 40,952,469 effective search space: 30141017184 effective search space used: 30141017184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940228 AW940228|AW940228 GH06385.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06385 3, mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,725 Number of Sequences: 18737 Number of extensions: 13725 Number of successful extensions: 709 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 709 Number of HSP's gapped (non-prelim): 0 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940273 AW940273|AW940273 GH07822.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07822 3 similar to AC006421: Drosophila melanogaster, chromosome 2R, region 44C1-44C5, P1 clones DS08614 and DS00667, complete sequence, mRNA sequence. (537 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,372 Number of Sequences: 18737 Number of extensions: 11372 Number of successful extensions: 214 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 214 Number of HSP's gapped (non-prelim): 0 length of query: 537 length of database: 41,270,998 effective HSP length: 17 effective length of query: 520 effective length of database: 40,952,469 effective search space: 21295283880 effective search space used: 21295283880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940446 AW940446|AW940446 GH12056.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH12056 3 similar to AC005721: Drosophila melanogaster, chromosome 3L, region 88D8-88E1, BAC clone BACR48E23, complete sequence, mRNA sequence. (860 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,088 Number of Sequences: 18737 Number of extensions: 19088 Number of successful extensions: 433 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 433 Number of HSP's gapped (non-prelim): 0 length of query: 860 length of database: 41,270,998 effective HSP length: 17 effective length of query: 843 effective length of database: 40,952,469 effective search space: 34522931367 effective search space used: 34522931367 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940620 AW940620|AW940620 GH16383.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16383 3 similar to U14101: Drosophila melanogaster TART-B1 transposon putative single-stranded nucleic acid binding protein and putative reverse transcriptase genes, complete cds, mRNA sequence. (793 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,370 Number of Sequences: 18737 Number of extensions: 27370 Number of successful extensions: 2620 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2620 Number of HSP's gapped (non-prelim): 0 length of query: 793 length of database: 41,270,998 effective HSP length: 17 effective length of query: 776 effective length of database: 40,952,469 effective search space: 31779115944 effective search space used: 31779115944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940851 AW940851|AW940851 GH22170.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22170 3 similar to AF171829: Drosophila melanogaster clone 178 mRNA sequence. (567 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,359 Number of Sequences: 18737 Number of extensions: 13359 Number of successful extensions: 437 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 437 Number of HSP's gapped (non-prelim): 0 length of query: 567 length of database: 41,270,998 effective HSP length: 17 effective length of query: 550 effective length of database: 40,952,469 effective search space: 22523857950 effective search space used: 22523857950 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940893 AW940893|AW940893 GH23165.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23165 3, mRNA sequence. (480 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7268 Number of Sequences: 18737 Number of extensions: 7268 Number of successful extensions: 149 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149 Number of HSP's gapped (non-prelim): 0 length of query: 480 length of database: 41,270,998 effective HSP length: 17 effective length of query: 463 effective length of database: 40,952,469 effective search space: 18960993147 effective search space used: 18960993147 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940921 AW940921|AW940921 GH23730.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23730 3 similar to AC005719: Drosophila melanogaster, chromosome 2R, region 38A5-38B4, BAC clone BACR48M05, complete sequence, mRNA sequence. (785 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,814 Number of Sequences: 18737 Number of extensions: 19814 Number of successful extensions: 519 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 519 Number of HSP's gapped (non-prelim): 0 length of query: 785 length of database: 41,270,998 effective HSP length: 17 effective length of query: 768 effective length of database: 40,952,469 effective search space: 31451496192 effective search space used: 31451496192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940966 AW940966|AW940966 GH25188.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25188 3 similar to AC004573: Drosophila melanogaster, chromosome 2L, region 21C5-21D1, P1 clone DS07610, complete sequence, mRNA sequence. (702 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 22,492 Number of Sequences: 18737 Number of extensions: 22492 Number of successful extensions: 714 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 714 Number of HSP's gapped (non-prelim): 0 length of query: 702 length of database: 41,270,998 effective HSP length: 17 effective length of query: 685 effective length of database: 40,952,469 effective search space: 28052441265 effective search space used: 28052441265 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940979 AW940979|AW940979 GH25505.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25505 3, mRNA sequence. (829 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,764 Number of Sequences: 18737 Number of extensions: 23764 Number of successful extensions: 733 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 733 Number of HSP's gapped (non-prelim): 0 length of query: 829 length of database: 41,270,998 effective HSP length: 17 effective length of query: 812 effective length of database: 40,952,469 effective search space: 33253404828 effective search space used: 33253404828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW940992 AW940992|AW940992 GH25761.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25761 3 similar to AC009888: Drosophila melanogaster, chromosome 3R, region 99A7-99B5, BAC clones BACR48K01 and BACR48O23, complete sequence, mRNA sequence. (532 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,348 Number of Sequences: 18737 Number of extensions: 11348 Number of successful extensions: 291 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 291 Number of HSP's gapped (non-prelim): 0 length of query: 532 length of database: 41,270,998 effective HSP length: 17 effective length of query: 515 effective length of database: 40,952,469 effective search space: 21090521535 effective search space used: 21090521535 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941024 AW941024|AW941024 GH26692.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH26692 3, mRNA sequence. (658 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,340 Number of Sequences: 18737 Number of extensions: 14340 Number of successful extensions: 336 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 336 Number of HSP's gapped (non-prelim): 0 length of query: 658 length of database: 41,270,998 effective HSP length: 17 effective length of query: 641 effective length of database: 40,952,469 effective search space: 26250532629 effective search space used: 26250532629 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941120 AW941120|AW941120 GM01206.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01206 3 similar to AL033125: Drosophila melanogaster sequence EG0007: concatenation of cosmids 30D3:40623-16930, 65G3:42474-1. CDS:complement(join(36683..37415,37458..37666)), mRNA sequence. (514 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,014 Number of Sequences: 18737 Number of extensions: 12014 Number of successful extensions: 262 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 262 Number of HSP's gapped (non-prelim): 0 length of query: 514 length of database: 41,270,998 effective HSP length: 17 effective length of query: 497 effective length of database: 40,952,469 effective search space: 20353377093 effective search space used: 20353377093 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941127 AW941127|AW941127 GM01267.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01267 3 similar to AB031273: Drosophila melanogaster mbf1 gene for Multiprotein Bridging Factor 1, complete cds, mRNA sequence. (497 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,602 Number of Sequences: 18737 Number of extensions: 11602 Number of successful extensions: 265 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 265 Number of HSP's gapped (non-prelim): 0 length of query: 497 length of database: 41,270,998 effective HSP length: 17 effective length of query: 480 effective length of database: 40,952,469 effective search space: 19657185120 effective search space used: 19657185120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941136 AW941136|AW941136 GM01456.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01456 3, mRNA sequence. (317 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5808 Number of Sequences: 18737 Number of extensions: 5808 Number of successful extensions: 444 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 444 Number of HSP's gapped (non-prelim): 0 length of query: 317 length of database: 41,270,998 effective HSP length: 16 effective length of query: 301 effective length of database: 40,971,206 effective search space: 12332333006 effective search space used: 12332333006 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941164 AW941164|AW941164 GM02002.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02002 3 similar to DM_ROO: emb|DM_ROO, mRNA sequence. (468 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,051 Number of Sequences: 18737 Number of extensions: 10051 Number of successful extensions: 197 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 197 Number of HSP's gapped (non-prelim): 0 length of query: 468 length of database: 41,270,998 effective HSP length: 17 effective length of query: 451 effective length of database: 40,952,469 effective search space: 18469563519 effective search space used: 18469563519 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941180 AW941180|AW941180 GM02923.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02923 3, mRNA sequence. (551 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,645 Number of Sequences: 18737 Number of extensions: 11645 Number of successful extensions: 242 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 242 Number of HSP's gapped (non-prelim): 0 length of query: 551 length of database: 41,270,998 effective HSP length: 17 effective length of query: 534 effective length of database: 40,952,469 effective search space: 21868618446 effective search space used: 21868618446 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941184 AW941184|AW941184 GM03003.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03003 3 similar to AL033125: Drosophila melanogaster sequence EG0007: concatenation of cosmids 30D3:40623-16930, 65G3:42474-1. CDS:complement(join(36683..37415,37458..37666)), mRNA sequence. (438 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8679 Number of Sequences: 18737 Number of extensions: 8679 Number of successful extensions: 746 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 746 Number of HSP's gapped (non-prelim): 0 length of query: 438 length of database: 41,270,998 effective HSP length: 17 effective length of query: 421 effective length of database: 40,952,469 effective search space: 17240989449 effective search space used: 17240989449 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941191 AW941191|AW941191 GM03205.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03205 3, mRNA sequence. (544 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,661 Number of Sequences: 18737 Number of extensions: 12661 Number of successful extensions: 275 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 275 Number of HSP's gapped (non-prelim): 0 length of query: 544 length of database: 41,270,998 effective HSP length: 17 effective length of query: 527 effective length of database: 40,952,469 effective search space: 21581951163 effective search space used: 21581951163 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941202 AW941202|AW941202 GM03661.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03661 3, mRNA sequence. (653 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,243 Number of Sequences: 18737 Number of extensions: 12243 Number of successful extensions: 230 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 230 Number of HSP's gapped (non-prelim): 0 length of query: 653 length of database: 41,270,998 effective HSP length: 17 effective length of query: 636 effective length of database: 40,952,469 effective search space: 26045770284 effective search space used: 26045770284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941215 AW941215|AW941215 GM04363.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04363 3, mRNA sequence. (350 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value unc-13-RC feature: mRNA loc=4:complement(890515..891242,891308..... 442 e-124 unc-13-RB feature: mRNA loc=4:complement(890515..891242,891308..... 442 e-124 unc-13-RA feature: mRNA loc=4:complement(890513..891242,891308..... 442 e-124 >unc-13-RC feature: mRNA loc=4:complement(890515..891242,891308..891434, 891500..891662,891715..891813,892802..893159, 893223..893514,893582..893748,893834..894055, 894791..895072,895131..895298,895702..895827, 895884..896042,896105..896377,896458..896782, 898439..898580,902205..902311,902549..902669, 902731..902950,903155..903229,905348..905479, 917981..922870,922925..923059, 923949..924381);ID=FBan0002999;gene_id=FBgn0025726;gene_s ym=unc-13;sym=CG2999;scaffold=AE003847;len=9744 Length = 9744 Score = 442 bits (223), Expect = e-124 Identities = 223/223 (100%) Strand = Plus / Plus Query: 32 gaaaatgcacgtgtacaaaaaagctctacaagccctgatatatcctatatcctcaacaac 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5665 gaaaatgcacgtgtacaaaaaagctctacaagccctgatatatcctatatcctcaacaac 5724 Query: 92 gccccacaattttttgttatggactgctacgtcaccaacgtactgctacgagtgtgaggg 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5725 gccccacaattttttgttatggactgctacgtcaccaacgtactgctacgagtgtgaggg 5784 Query: 152 tcttttgtgggggatagcacgacaaggggtccgttgcactgagtgcggtgtaaagtgtca 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5785 tcttttgtgggggatagcacgacaaggggtccgttgcactgagtgcggtgtaaagtgtca 5844 Query: 212 tgaaaaatgtaaggaccttctgaatgcggactgcctgcagcgt 254 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5845 tgaaaaatgtaaggaccttctgaatgcggactgcctgcagcgt 5887 >unc-13-RB feature: mRNA loc=4:complement(890515..891242,891308..891434, 891500..891662,891715..891813,892802..893159, 893223..893514,893582..893748,893834..894055, 894791..895072,895131..895298,895702..895827, 895884..896042,896105..896377,896458..896782, 898439..898580,902205..902311,902549..902669, 902731..902950,903155..903229,905348..905479, 906553..912428,912482..912537, 913093..913141);ID=FBan0002999;gene_id=FBgn0025726;gene_s ym=unc-13;sym=CG2999;scaffold=AE003847;len=10267 Length = 10267 Score = 442 bits (223), Expect = e-124 Identities = 223/223 (100%) Strand = Plus / Plus Query: 32 gaaaatgcacgtgtacaaaaaagctctacaagccctgatatatcctatatcctcaacaac 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6188 gaaaatgcacgtgtacaaaaaagctctacaagccctgatatatcctatatcctcaacaac 6247 Query: 92 gccccacaattttttgttatggactgctacgtcaccaacgtactgctacgagtgtgaggg 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6248 gccccacaattttttgttatggactgctacgtcaccaacgtactgctacgagtgtgaggg 6307 Query: 152 tcttttgtgggggatagcacgacaaggggtccgttgcactgagtgcggtgtaaagtgtca 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6308 tcttttgtgggggatagcacgacaaggggtccgttgcactgagtgcggtgtaaagtgtca 6367 Query: 212 tgaaaaatgtaaggaccttctgaatgcggactgcctgcagcgt 254 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6368 tgaaaaatgtaaggaccttctgaatgcggactgcctgcagcgt 6410 >unc-13-RA feature: mRNA loc=4:complement(890513..891242,891308..891434, 891500..891662,891715..891813,892802..893159, 893223..893514,893582..893748,893834..894055, 894791..895072,895131..895298,895702..895827, 895884..896042,896105..896377,896458..896782, 898439..898580,901431..901537,902549..902669, 902731..902950,903155..903229,905348..905479, 917981..922870,922925..923059, 923949..924381);ID=FBan0002999;gene_id=FBgn0025726;gene_s ym=unc-13;sym=CG2999;scaffold=AE003847;len=9746 Length = 9746 Score = 442 bits (223), Expect = e-124 Identities = 223/223 (100%) Strand = Plus / Plus Query: 32 gaaaatgcacgtgtacaaaaaagctctacaagccctgatatatcctatatcctcaacaac 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5665 gaaaatgcacgtgtacaaaaaagctctacaagccctgatatatcctatatcctcaacaac 5724 Query: 92 gccccacaattttttgttatggactgctacgtcaccaacgtactgctacgagtgtgaggg 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5725 gccccacaattttttgttatggactgctacgtcaccaacgtactgctacgagtgtgaggg 5784 Query: 152 tcttttgtgggggatagcacgacaaggggtccgttgcactgagtgcggtgtaaagtgtca 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5785 tcttttgtgggggatagcacgacaaggggtccgttgcactgagtgcggtgtaaagtgtca 5844 Query: 212 tgaaaaatgtaaggaccttctgaatgcggactgcctgcagcgt 254 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5845 tgaaaaatgtaaggaccttctgaatgcggactgcctgcagcgt 5887 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6098 Number of Sequences: 18737 Number of extensions: 6098 Number of successful extensions: 429 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 423 Number of HSP's gapped (non-prelim): 6 length of query: 350 length of database: 41,270,998 effective HSP length: 16 effective length of query: 334 effective length of database: 40,971,206 effective search space: 13684382804 effective search space used: 13684382804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941220 AW941220|AW941220 GM04458.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04458 3, mRNA sequence. (607 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,828 Number of Sequences: 18737 Number of extensions: 12828 Number of successful extensions: 241 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 241 Number of HSP's gapped (non-prelim): 0 length of query: 607 length of database: 41,270,998 effective HSP length: 17 effective length of query: 590 effective length of database: 40,952,469 effective search space: 24161956710 effective search space used: 24161956710 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941234 AW941234|AW941234 GM04775.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04775 3 similar to X97997: D.melanogaster Broad-Complex DNA, mRNA sequence. (563 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value br-RF feature: mRNA loc=X:join(1380910..1381479,1392604..1392792... 662 0.0 >br-RF feature: mRNA loc=X:join(1380910..1381479,1392604..1392792, 1392868..1393321,1393411..1393684,1393772..1393911, 1394056..1394106, 1417402..1418314);ID=FBan0011491;gene_id=FBgn0000210;gene _sym=br;sym=CG11491;scaffold=AE003421;len=2591 Length = 2591 Score = 662 bits (334), Expect = 0.0 Identities = 365/370 (98%), Gaps = 4/370 (1%) Strand = Plus / Plus Query: 158 gttatcagggataaaatatcaagtatgcagtaggaaagtaattttttctacttattcacg 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 gttatcagggataaaatatcaagtatgcagtaggaaagtaattttttctacttattcacg 2043 Query: 218 aatacgacgaataaagtaacagaaattagaatcacttttttatatacacatacatataca 277 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2044 aatacgacgaataaagtaacagaaattaaaatcacttttttatatacacatacatataca 2103 Query: 278 cacgcgagcgtataaacgataaatgtgcatatgcgtatgcgcaagctaagcgaaacaact 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 cacgcgagcgtataaacgataaatgtgcatatgcgtatgcgcaagctaagcgaaacaact 2163 Query: 338 aaactaatgtctatgtatacatgtatatactttacaccatttaccatatacaatttataa 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 aaactaatgtctatgtatacatgtatatactttacaccatttaccatatacaatttataa 2223 Query: 398 gccgatatgccgatgatatacacatatacaatgttagtttggtgtatagaagacagatga 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 gccgatatgccgatgatatacacatatacaatgttagtttggtgtatagaagacagatga 2283 Query: 458 gctgtaaacgtttttgc-aatcaag-aaataacgtatttaacaaaaccgc-aagtaactc 514 ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 2284 gctgtaaacgtttttgcaaatcaagaaaataacgtatttaacaaaaccgcaaagtaactc 2343 Query: 515 -gtgattttt 523 ||||||||| Sbjct: 2344 agtgattttt 2353 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,389 Number of Sequences: 18737 Number of extensions: 11389 Number of successful extensions: 393 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 390 Number of HSP's gapped (non-prelim): 2 length of query: 563 length of database: 41,270,998 effective HSP length: 17 effective length of query: 546 effective length of database: 40,952,469 effective search space: 22360048074 effective search space used: 22360048074 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941236 AW941236|AW941236 GM04921.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04921 3, mRNA sequence. (597 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,838 Number of Sequences: 18737 Number of extensions: 15838 Number of successful extensions: 588 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 588 Number of HSP's gapped (non-prelim): 0 length of query: 597 length of database: 41,270,998 effective HSP length: 17 effective length of query: 580 effective length of database: 40,952,469 effective search space: 23752432020 effective search space used: 23752432020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941257 AW941257|AW941257 GM05817.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM05817 3, mRNA sequence. (623 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33184-RD feature: mRNA loc=2R:join(9018913..9019159,9019631..9... 1199 0.0 CG33184-RA feature: mRNA loc=2R:join(9018913..9019159,9019631..9... 1199 0.0 CG33184-RC feature: mRNA loc=2R:join(9019212..9019358,9019631..9... 1110 0.0 CG33184-RB feature: mRNA loc=2R:join(9019241..9019575,9019631..9... 1108 0.0 >CG33184-RD feature: mRNA loc=2R:join(9018913..9019159,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=830 Length = 830 Score = 1199 bits (605), Expect = 0.0 Identities = 618/621 (99%), Gaps = 1/621 (0%) Strand = Plus / Minus Query: 4 acatgttagagcgtatatatattttgaaaagtacgtgtgcggaattgaacaatacaattg 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 822 acatgttagagcgtatatatattttgaaaagtacgtgtgcggaattgaacaatacaattg 763 Query: 64 gctaagaaatcgacgggcttgatggtgatgaaccgggagagaatgaaggccaccagaatg 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 762 gcttagaaatcgacgggcttgatggtgatgaaccgggagagaatgaaggccaccagaatg 703 Query: 124 gtggcgcacacgaaacagaaggcgaacatgtagaagctctcctcggtgaagatgtcggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 702 gtggcgcacacgaaacagaaggcgaacatgtagaagctctcctcggtgaagatgtcggag 643 Query: 184 aatgcgggtatatcctggtagatcttctcgatcaccgccagtgttcctttgtgcttcctc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 aatgcgggtatatcctggtagatcttctcgatcaccgccagtgttcctttgtgcttcctc 583 Query: 244 accatcctgatggttacttctccttggttgccttctttccgccgccgg-gcctcctgcta 302 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 582 accatcctgatggttacttcttcttggttgccttctttccgccgccggcgcctcctgcta 523 Query: 303 gtttctgtttctccgccttggtcaggaccttgttggtgatctcctcgcgcggtgccaagc 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 gtttctgtttctccgccttggtcaggaccttgttggtgatctcctcgcgcggtgccaagc 463 Query: 363 tggacacgtgcttgttgcacagctgcagcagctctagtgtgtttaggttatcgctgttga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 tggacacgtgcttgttgcacagctgcagcagctctagtgtgtttaggttatcgctgttga 403 Query: 423 agcggatctccttgacttgggcttgttcttgcgctgaatcaatcagggcaaacttgatgt 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 agcggatctccttgacttgggcttgttcttgcgctgaatcaatcagggcaaacttgatgt 343 Query: 483 tggccggctggcgatcgcagacgatttctggcttgaccacgcacttgggattcgtagctg 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 tggccggctggcgatcgcagacgatttctggcttgaccacgcacttgggattcgtagctg 283 Query: 543 ccactttgggtgtggagagcaggaagaggaattcccgtgtggacttgacattttccgcga 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 282 ccactttgggtgtggagagcaggaagaggaattcccgtgtggacttgacattttccgcga 223 Query: 603 atggatcgaactgcacggtta 623 ||||||||||||||||||||| Sbjct: 222 atggatcgaactgcacggtta 202 >CG33184-RA feature: mRNA loc=2R:join(9018913..9019159,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=830 Length = 830 Score = 1199 bits (605), Expect = 0.0 Identities = 618/621 (99%), Gaps = 1/621 (0%) Strand = Plus / Minus Query: 4 acatgttagagcgtatatatattttgaaaagtacgtgtgcggaattgaacaatacaattg 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 822 acatgttagagcgtatatatattttgaaaagtacgtgtgcggaattgaacaatacaattg 763 Query: 64 gctaagaaatcgacgggcttgatggtgatgaaccgggagagaatgaaggccaccagaatg 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 762 gcttagaaatcgacgggcttgatggtgatgaaccgggagagaatgaaggccaccagaatg 703 Query: 124 gtggcgcacacgaaacagaaggcgaacatgtagaagctctcctcggtgaagatgtcggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 702 gtggcgcacacgaaacagaaggcgaacatgtagaagctctcctcggtgaagatgtcggag 643 Query: 184 aatgcgggtatatcctggtagatcttctcgatcaccgccagtgttcctttgtgcttcctc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 aatgcgggtatatcctggtagatcttctcgatcaccgccagtgttcctttgtgcttcctc 583 Query: 244 accatcctgatggttacttctccttggttgccttctttccgccgccgg-gcctcctgcta 302 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 582 accatcctgatggttacttcttcttggttgccttctttccgccgccggcgcctcctgcta 523 Query: 303 gtttctgtttctccgccttggtcaggaccttgttggtgatctcctcgcgcggtgccaagc 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 gtttctgtttctccgccttggtcaggaccttgttggtgatctcctcgcgcggtgccaagc 463 Query: 363 tggacacgtgcttgttgcacagctgcagcagctctagtgtgtttaggttatcgctgttga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 tggacacgtgcttgttgcacagctgcagcagctctagtgtgtttaggttatcgctgttga 403 Query: 423 agcggatctccttgacttgggcttgttcttgcgctgaatcaatcagggcaaacttgatgt 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 agcggatctccttgacttgggcttgttcttgcgctgaatcaatcagggcaaacttgatgt 343 Query: 483 tggccggctggcgatcgcagacgatttctggcttgaccacgcacttgggattcgtagctg 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 tggccggctggcgatcgcagacgatttctggcttgaccacgcacttgggattcgtagctg 283 Query: 543 ccactttgggtgtggagagcaggaagaggaattcccgtgtggacttgacattttccgcga 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 282 ccactttgggtgtggagagcaggaagaggaattcccgtgtggacttgacattttccgcga 223 Query: 603 atggatcgaactgcacggtta 623 ||||||||||||||||||||| Sbjct: 222 atggatcgaactgcacggtta 202 >CG33184-RC feature: mRNA loc=2R:join(9019212..9019358,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=730 Length = 730 Score = 1110 bits (560), Expect = 0.0 Identities = 573/576 (99%), Gaps = 1/576 (0%) Strand = Plus / Minus Query: 4 acatgttagagcgtatatatattttgaaaagtacgtgtgcggaattgaacaatacaattg 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 722 acatgttagagcgtatatatattttgaaaagtacgtgtgcggaattgaacaatacaattg 663 Query: 64 gctaagaaatcgacgggcttgatggtgatgaaccgggagagaatgaaggccaccagaatg 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 662 gcttagaaatcgacgggcttgatggtgatgaaccgggagagaatgaaggccaccagaatg 603 Query: 124 gtggcgcacacgaaacagaaggcgaacatgtagaagctctcctcggtgaagatgtcggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 602 gtggcgcacacgaaacagaaggcgaacatgtagaagctctcctcggtgaagatgtcggag 543 Query: 184 aatgcgggtatatcctggtagatcttctcgatcaccgccagtgttcctttgtgcttcctc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 aatgcgggtatatcctggtagatcttctcgatcaccgccagtgttcctttgtgcttcctc 483 Query: 244 accatcctgatggttacttctccttggttgccttctttccgccgccgg-gcctcctgcta 302 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 482 accatcctgatggttacttcttcttggttgccttctttccgccgccggcgcctcctgcta 423 Query: 303 gtttctgtttctccgccttggtcaggaccttgttggtgatctcctcgcgcggtgccaagc 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 gtttctgtttctccgccttggtcaggaccttgttggtgatctcctcgcgcggtgccaagc 363 Query: 363 tggacacgtgcttgttgcacagctgcagcagctctagtgtgtttaggttatcgctgttga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 tggacacgtgcttgttgcacagctgcagcagctctagtgtgtttaggttatcgctgttga 303 Query: 423 agcggatctccttgacttgggcttgttcttgcgctgaatcaatcagggcaaacttgatgt 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 agcggatctccttgacttgggcttgttcttgcgctgaatcaatcagggcaaacttgatgt 243 Query: 483 tggccggctggcgatcgcagacgatttctggcttgaccacgcacttgggattcgtagctg 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 tggccggctggcgatcgcagacgatttctggcttgaccacgcacttgggattcgtagctg 183 Query: 543 ccactttgggtgtggagagcaggaagaggaattccc 578 |||||||||||||||||||||||||||||||||||| Sbjct: 182 ccactttgggtgtggagagcaggaagaggaattccc 147 >CG33184-RB feature: mRNA loc=2R:join(9019241..9019575,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=918 Length = 918 Score = 1108 bits (559), Expect = 0.0 Identities = 572/575 (99%), Gaps = 1/575 (0%) Strand = Plus / Minus Query: 4 acatgttagagcgtatatatattttgaaaagtacgtgtgcggaattgaacaatacaattg 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 910 acatgttagagcgtatatatattttgaaaagtacgtgtgcggaattgaacaatacaattg 851 Query: 64 gctaagaaatcgacgggcttgatggtgatgaaccgggagagaatgaaggccaccagaatg 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 850 gcttagaaatcgacgggcttgatggtgatgaaccgggagagaatgaaggccaccagaatg 791 Query: 124 gtggcgcacacgaaacagaaggcgaacatgtagaagctctcctcggtgaagatgtcggag 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 790 gtggcgcacacgaaacagaaggcgaacatgtagaagctctcctcggtgaagatgtcggag 731 Query: 184 aatgcgggtatatcctggtagatcttctcgatcaccgccagtgttcctttgtgcttcctc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 730 aatgcgggtatatcctggtagatcttctcgatcaccgccagtgttcctttgtgcttcctc 671 Query: 244 accatcctgatggttacttctccttggttgccttctttccgccgccgg-gcctcctgcta 302 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 670 accatcctgatggttacttcttcttggttgccttctttccgccgccggcgcctcctgcta 611 Query: 303 gtttctgtttctccgccttggtcaggaccttgttggtgatctcctcgcgcggtgccaagc 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 610 gtttctgtttctccgccttggtcaggaccttgttggtgatctcctcgcgcggtgccaagc 551 Query: 363 tggacacgtgcttgttgcacagctgcagcagctctagtgtgtttaggttatcgctgttga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 tggacacgtgcttgttgcacagctgcagcagctctagtgtgtttaggttatcgctgttga 491 Query: 423 agcggatctccttgacttgggcttgttcttgcgctgaatcaatcagggcaaacttgatgt 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 agcggatctccttgacttgggcttgttcttgcgctgaatcaatcagggcaaacttgatgt 431 Query: 483 tggccggctggcgatcgcagacgatttctggcttgaccacgcacttgggattcgtagctg 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 430 tggccggctggcgatcgcagacgatttctggcttgaccacgcacttgggattcgtagctg 371 Query: 543 ccactttgggtgtggagagcaggaagaggaattcc 577 ||||||||||||||||||||||||||||||||||| Sbjct: 370 ccactttgggtgtggagagcaggaagaggaattcc 336 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,296 Number of Sequences: 18737 Number of extensions: 20296 Number of successful extensions: 583 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 575 Number of HSP's gapped (non-prelim): 4 length of query: 623 length of database: 41,270,998 effective HSP length: 17 effective length of query: 606 effective length of database: 40,952,469 effective search space: 24817196214 effective search space used: 24817196214 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941264 AW941264|AW941264 GM06310.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06310 3, mRNA sequence. (662 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,369 Number of Sequences: 18737 Number of extensions: 14369 Number of successful extensions: 279 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 279 Number of HSP's gapped (non-prelim): 0 length of query: 662 length of database: 41,270,998 effective HSP length: 17 effective length of query: 645 effective length of database: 40,952,469 effective search space: 26414342505 effective search space used: 26414342505 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941275 AW941275|AW941275 GM06790.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06790 3, mRNA sequence. (568 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,531 Number of Sequences: 18737 Number of extensions: 13531 Number of successful extensions: 407 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 407 Number of HSP's gapped (non-prelim): 0 length of query: 568 length of database: 41,270,998 effective HSP length: 17 effective length of query: 551 effective length of database: 40,952,469 effective search space: 22564810419 effective search space used: 22564810419 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941276 AW941276|AW941276 GM06804.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06804 3, mRNA sequence. (527 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,912 Number of Sequences: 18737 Number of extensions: 12912 Number of successful extensions: 262 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 262 Number of HSP's gapped (non-prelim): 0 length of query: 527 length of database: 41,270,998 effective HSP length: 17 effective length of query: 510 effective length of database: 40,952,469 effective search space: 20885759190 effective search space used: 20885759190 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941282 AW941282|AW941282 GM06994.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06994 3, mRNA sequence. (538 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8278 Number of Sequences: 18737 Number of extensions: 8278 Number of successful extensions: 159 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 159 Number of HSP's gapped (non-prelim): 0 length of query: 538 length of database: 41,270,998 effective HSP length: 17 effective length of query: 521 effective length of database: 40,952,469 effective search space: 21336236349 effective search space used: 21336236349 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941284 AW941284|AW941284 GM07040.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07040 3, mRNA sequence. (574 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,963 Number of Sequences: 18737 Number of extensions: 12963 Number of successful extensions: 234 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 234 Number of HSP's gapped (non-prelim): 0 length of query: 574 length of database: 41,270,998 effective HSP length: 17 effective length of query: 557 effective length of database: 40,952,469 effective search space: 22810525233 effective search space used: 22810525233 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941286 AW941286|AW941286 GM07077.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07077 3 similar to AC006402: Drosophila melanogaster, chromosome 2L, region 38C-38D, BAC clone BACR08D17, complete sequence, mRNA sequence. (782 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,168 Number of Sequences: 18737 Number of extensions: 16168 Number of successful extensions: 690 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 690 Number of HSP's gapped (non-prelim): 0 length of query: 782 length of database: 41,270,998 effective HSP length: 17 effective length of query: 765 effective length of database: 40,952,469 effective search space: 31328638785 effective search space used: 31328638785 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941289 AW941289|AW941289 GM07606.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07606 3, mRNA sequence. (595 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,406 Number of Sequences: 18737 Number of extensions: 11406 Number of successful extensions: 301 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 301 Number of HSP's gapped (non-prelim): 0 length of query: 595 length of database: 41,270,998 effective HSP length: 17 effective length of query: 578 effective length of database: 40,952,469 effective search space: 23670527082 effective search space used: 23670527082 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941292 AW941292|AW941292 GM07660.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07660 3, mRNA sequence. (570 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,423 Number of Sequences: 18737 Number of extensions: 14423 Number of successful extensions: 445 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 445 Number of HSP's gapped (non-prelim): 0 length of query: 570 length of database: 41,270,998 effective HSP length: 17 effective length of query: 553 effective length of database: 40,952,469 effective search space: 22646715357 effective search space used: 22646715357 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941293 AW941293|AW941293 GM07702.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07702 3, mRNA sequence. (555 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,404 Number of Sequences: 18737 Number of extensions: 19404 Number of successful extensions: 584 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 584 Number of HSP's gapped (non-prelim): 0 length of query: 555 length of database: 41,270,998 effective HSP length: 17 effective length of query: 538 effective length of database: 40,952,469 effective search space: 22032428322 effective search space used: 22032428322 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941322 AW941322|AW941322 GM08676.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM08676 3, mRNA sequence. (492 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,957 Number of Sequences: 18737 Number of extensions: 10957 Number of successful extensions: 223 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 223 Number of HSP's gapped (non-prelim): 0 length of query: 492 length of database: 41,270,998 effective HSP length: 17 effective length of query: 475 effective length of database: 40,952,469 effective search space: 19452422775 effective search space used: 19452422775 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941340 AW941340|AW941340 GM09444.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM09444 3, mRNA sequence. (536 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7099 Number of Sequences: 18737 Number of extensions: 7099 Number of successful extensions: 148 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 148 Number of HSP's gapped (non-prelim): 0 length of query: 536 length of database: 41,270,998 effective HSP length: 17 effective length of query: 519 effective length of database: 40,952,469 effective search space: 21254331411 effective search space used: 21254331411 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941341 AW941341|AW941341 GM09570.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM09570 3, mRNA sequence. (742 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR30066-RA feature: ncRNA loc=2R:complement(9353318..9354071,935... 1245 0.0 >CR30066-RA feature: ncRNA loc=2R:complement(9353318..9354071, 9354108..9354651);ID=FBan0030066;gene_id=FBgn0050066;gen e_sym=CR30066;sym=CR30066;type=ncRNA;scaffold=AE003815;l en=1298 Length = 1298 Score = 1245 bits (628), Expect = 0.0 Identities = 718/746 (96%), Gaps = 5/746 (0%) Strand = Plus / Plus Query: 1 acgaagggtattacagtttacggaggcatgttaagtaacaatatgtgtgggctaattttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 18 acgaagggtattacagtttacggaggcatgttaagtaacaatatgtgtgggcta-ttttc 76 Query: 61 aaatgaattgacacaaagtaggccattatgtttacaatcttgttaggtttcaggtaaaaa 120 ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| Sbjct: 77 aaatgaattgacacaaagtaggccattatgtttacaatcttgttaagtttaaagtaaaaa 136 Query: 121 ggtatatcatttgtaattgttagcaatgatattgcaataattagtatttcatgttgtcac 180 ||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 137 cgtaaatcatatgtaattgttagcaatgatattgcaataattagtatttcatttggtcac 196 Query: 181 aatttcaatgaatttaatttatcgtaggtagataatagtttcatttatgattcgagtaaa 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aatttcaatgaattcaatttatcgtaggtagataatagtttcatttatgattcgagtaaa 256 Query: 241 tttggaattttttacaacttgaactcgatactatacactatataaggtttttgcacatgt 300 |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct: 257 tttggaatcttttacaacttaaactcgatactatacactacataaggtttttgcacatgt 316 Query: 301 tgaaagggtattgcgatattcgaatttggaaactagctagtttttcttgacac-tttgtt 359 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 317 tgaaagggtattgcgaaattcgaatttggaaactagctagtttttcttgacacttttgtt 376 Query: 360 tacttttaattgcggcacacgcacaatgcaggctgaatcagagatacggggcagctgccc 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 tacttttaattgcggcacacgcacaatgcaggctgaatcagagatacggggcagctgccc 436 Query: 420 tcaccttgcccacaaaactagatggtgattgtcaaggttttccggggcggcagccagtga 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 tcaccttgcccacaaaactagatggtgattgtcaaggttttccggggcggcagccagtga 496 Query: 480 aactggaatctggtttccccagccccttcttaagtttttcgtatt--cgcaccaactaaa 537 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 497 aactggaatctggtttccccagccccttcttaagtttttcgtattcgcgcaccaactaaa 556 Query: 538 ggc-nnnnnnnnncactgaacgacaaatcgcgtggcacggatatggatatggatattatt 596 ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 557 ggcaaaaaaaaaacactgaacgacaaatcgcgtggcacggatatggatatggatattatt 616 Query: 597 cacgttcacggcggacccccattgttaaagcccggagagatggagacgcgtgctcgcggt 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 cacgttcacggcggacccccattgttaaagcccggagagatggagacgcgtgctcgcggt 676 Query: 657 tacgttggtttccaattcagtttcagtttcagtttggatacaagcatgggcatgggcatg 716 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 677 tacgttggtttccaattcagtttcagtttcagtttggatacgagcatgggcatgggcatg 736 Query: 717 ggtatatgggtatatgggtatgggtt 742 |||||||||||||||||||||||||| Sbjct: 737 ggtatatgggtatatgggtatgggtt 762 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,209 Number of Sequences: 18737 Number of extensions: 15209 Number of successful extensions: 569 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 559 Number of HSP's gapped (non-prelim): 3 length of query: 742 length of database: 41,270,998 effective HSP length: 17 effective length of query: 725 effective length of database: 40,952,469 effective search space: 29690540025 effective search space used: 29690540025 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941346 AW941346|AW941346 GM09783.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM09783 3, mRNA sequence. (679 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,599 Number of Sequences: 18737 Number of extensions: 15599 Number of successful extensions: 288 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 288 Number of HSP's gapped (non-prelim): 0 length of query: 679 length of database: 41,270,998 effective HSP length: 17 effective length of query: 662 effective length of database: 40,952,469 effective search space: 27110534478 effective search space used: 27110534478 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941353 AW941353|AW941353 GM10545.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM10545 3, mRNA sequence. (642 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,963 Number of Sequences: 18737 Number of extensions: 12963 Number of successful extensions: 247 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247 Number of HSP's gapped (non-prelim): 0 length of query: 642 length of database: 41,270,998 effective HSP length: 17 effective length of query: 625 effective length of database: 40,952,469 effective search space: 25595293125 effective search space used: 25595293125 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941357 AW941357|AW941357 GM10858.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM10858 3, mRNA sequence. (414 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,064 Number of Sequences: 18737 Number of extensions: 10064 Number of successful extensions: 962 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 962 Number of HSP's gapped (non-prelim): 0 length of query: 414 length of database: 41,270,998 effective HSP length: 17 effective length of query: 397 effective length of database: 40,952,469 effective search space: 16258130193 effective search space used: 16258130193 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941358 AW941358|AW941358 GM10877.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM10877 3, mRNA sequence. (491 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,818 Number of Sequences: 18737 Number of extensions: 10818 Number of successful extensions: 246 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 246 Number of HSP's gapped (non-prelim): 0 length of query: 491 length of database: 41,270,998 effective HSP length: 17 effective length of query: 474 effective length of database: 40,952,469 effective search space: 19411470306 effective search space used: 19411470306 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941435 AW941435|AW941435 HL03538.3prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL03538 3, mRNA sequence. (648 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4658-RC feature: mRNA loc=2L:join(9949696..9949738,9949838..99... 690 0.0 CG4658-RB feature: mRNA loc=2L:join(9949696..9949738,9949812..99... 690 0.0 CG4658-RA feature: mRNA loc=2L:join(9949696..9950309,9950369..99... 690 0.0 >CG4658-RC feature: mRNA loc=2L:join(9949696..9949738,9949838..9950309, 9950369..9951294,9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2234 Length = 2234 Score = 690 bits (348), Expect = 0.0 Identities = 348/348 (100%) Strand = Plus / Plus Query: 301 aggtgtggggctgcggcgacaaatcatcacgcgaagtgcaattggacatcaagaagtggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1612 aggtgtggggctgcggcgacaaatcatcacgcgaagtgcaattggacatcaagaagtggc 1671 Query: 361 aaatcaaggaggccgaacggcagcggacagtgaagctcacggccgccgactggatggacc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1672 aaatcaaggaggccgaacggcagcggacagtgaagctcacggccgccgactggatggacc 1731 Query: 421 atccggatcgatatctcctcgagctgggcggcaggcagaactacaacaattgatcgcgac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1732 atccggatcgatatctcctcgagctgggcggcaggcagaactacaacaattgatcgcgac 1791 Query: 481 tgctgcgcatatatgtattctaaaagcaatggatggggaatgccattcgaaatgaggggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1792 tgctgcgcatatatgtattctaaaagcaatggatggggaatgccattcgaaatgaggggc 1851 Query: 541 atgccacattgaaatttactgggatttgctatagttatgcactcgcagcacgagaagtaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1852 atgccacattgaaatttactgggatttgctatagttatgcactcgcagcacgagaagtaa 1911 Query: 601 tcactggactgaatttgtttttaattgatgttgattgatattcggttt 648 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1912 tcactggactgaatttgtttttaattgatgttgattgatattcggttt 1959 >CG4658-RB feature: mRNA loc=2L:join(9949696..9949738,9949812..9950309, 9950369..9951294,9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2260 Length = 2260 Score = 690 bits (348), Expect = 0.0 Identities = 348/348 (100%) Strand = Plus / Plus Query: 301 aggtgtggggctgcggcgacaaatcatcacgcgaagtgcaattggacatcaagaagtggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1638 aggtgtggggctgcggcgacaaatcatcacgcgaagtgcaattggacatcaagaagtggc 1697 Query: 361 aaatcaaggaggccgaacggcagcggacagtgaagctcacggccgccgactggatggacc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1698 aaatcaaggaggccgaacggcagcggacagtgaagctcacggccgccgactggatggacc 1757 Query: 421 atccggatcgatatctcctcgagctgggcggcaggcagaactacaacaattgatcgcgac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1758 atccggatcgatatctcctcgagctgggcggcaggcagaactacaacaattgatcgcgac 1817 Query: 481 tgctgcgcatatatgtattctaaaagcaatggatggggaatgccattcgaaatgaggggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1818 tgctgcgcatatatgtattctaaaagcaatggatggggaatgccattcgaaatgaggggc 1877 Query: 541 atgccacattgaaatttactgggatttgctatagttatgcactcgcagcacgagaagtaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1878 atgccacattgaaatttactgggatttgctatagttatgcactcgcagcacgagaagtaa 1937 Query: 601 tcactggactgaatttgtttttaattgatgttgattgatattcggttt 648 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1938 tcactggactgaatttgtttttaattgatgttgattgatattcggttt 1985 >CG4658-RA feature: mRNA loc=2L:join(9949696..9950309,9950369..9951294, 9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2333 Length = 2333 Score = 690 bits (348), Expect = 0.0 Identities = 348/348 (100%) Strand = Plus / Plus Query: 301 aggtgtggggctgcggcgacaaatcatcacgcgaagtgcaattggacatcaagaagtggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1711 aggtgtggggctgcggcgacaaatcatcacgcgaagtgcaattggacatcaagaagtggc 1770 Query: 361 aaatcaaggaggccgaacggcagcggacagtgaagctcacggccgccgactggatggacc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1771 aaatcaaggaggccgaacggcagcggacagtgaagctcacggccgccgactggatggacc 1830 Query: 421 atccggatcgatatctcctcgagctgggcggcaggcagaactacaacaattgatcgcgac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1831 atccggatcgatatctcctcgagctgggcggcaggcagaactacaacaattgatcgcgac 1890 Query: 481 tgctgcgcatatatgtattctaaaagcaatggatggggaatgccattcgaaatgaggggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1891 tgctgcgcatatatgtattctaaaagcaatggatggggaatgccattcgaaatgaggggc 1950 Query: 541 atgccacattgaaatttactgggatttgctatagttatgcactcgcagcacgagaagtaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1951 atgccacattgaaatttactgggatttgctatagttatgcactcgcagcacgagaagtaa 2010 Query: 601 tcactggactgaatttgtttttaattgatgttgattgatattcggttt 648 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2011 tcactggactgaatttgtttttaattgatgttgattgatattcggttt 2058 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,052 Number of Sequences: 18737 Number of extensions: 15052 Number of successful extensions: 318 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 315 Number of HSP's gapped (non-prelim): 3 length of query: 648 length of database: 41,270,998 effective HSP length: 17 effective length of query: 631 effective length of database: 40,952,469 effective search space: 25841007939 effective search space used: 25841007939 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941438 AW941438|AW941438 HL03793.3prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL03793 3, mRNA sequence. (622 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,253 Number of Sequences: 18737 Number of extensions: 12253 Number of successful extensions: 246 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 246 Number of HSP's gapped (non-prelim): 0 length of query: 622 length of database: 41,270,998 effective HSP length: 17 effective length of query: 605 effective length of database: 40,952,469 effective search space: 24776243745 effective search space used: 24776243745 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941449 AW941449|AW941449 HL04994.3prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL04994 3, mRNA sequence. (687 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,366 Number of Sequences: 18737 Number of extensions: 13366 Number of successful extensions: 230 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 230 Number of HSP's gapped (non-prelim): 0 length of query: 687 length of database: 41,270,998 effective HSP length: 17 effective length of query: 670 effective length of database: 40,952,469 effective search space: 27438154230 effective search space used: 27438154230 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941456 AW941456|AW941456 HL05775.3prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL05775 3, mRNA sequence. (486 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7836 Number of Sequences: 18737 Number of extensions: 7836 Number of successful extensions: 172 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 172 Number of HSP's gapped (non-prelim): 0 length of query: 486 length of database: 41,270,998 effective HSP length: 17 effective length of query: 469 effective length of database: 40,952,469 effective search space: 19206707961 effective search space used: 19206707961 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941459 AW941459|AW941459 HL07357.3prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL07357 3, mRNA sequence. (580 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9722 Number of Sequences: 18737 Number of extensions: 9722 Number of successful extensions: 275 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 275 Number of HSP's gapped (non-prelim): 0 length of query: 580 length of database: 41,270,998 effective HSP length: 17 effective length of query: 563 effective length of database: 40,952,469 effective search space: 23056240047 effective search space used: 23056240047 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941490 AW941490|AW941490 LD02060.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02060 3, mRNA sequence. (619 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9774 Number of Sequences: 18737 Number of extensions: 9774 Number of successful extensions: 206 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206 Number of HSP's gapped (non-prelim): 0 length of query: 619 length of database: 41,270,998 effective HSP length: 17 effective length of query: 602 effective length of database: 40,952,469 effective search space: 24653386338 effective search space used: 24653386338 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941601 AW941601|AW941601 LD05680.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD05680 3 similar to CG8728: FBan0008728 GO:[endopeptidase (GO:0004175)] located on: 2R 43F6-43F6;: 08/13/2002, mRNA sequence. (540 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8728-RA feature: mRNA loc=2R:complement(2997758..2998044,29981... 1023 0.0 >CG8728-RA feature: mRNA loc=2R:complement(2997758..2998044,2998105..2998609, 2998663..2998803,2998860..2999276,2999338..2999716, 2999801..3000070);ID=FBan0008728;gene_id=FBgn0033235;gen e_sym=CG8728;sym=CG8728;scaffold=AE003839;len=1999 Length = 1999 Score = 1023 bits (516), Expect = 0.0 Identities = 532/540 (98%) Strand = Plus / Plus Query: 1 cttcgaaattcattcgtttaaaagcgtnnnnnnntgtgtttctgaatcaaattcaaatat 60 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 106 cttcgaaattcattcgtttaaaagcgtaaaaaaatgtgtttctgaatcaaattcaaatat 165 Query: 61 aattcacataattctgtaaataccgttataatacccaaatcaccaacacatgatgaacgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 aattcacataattctgtaaataccgttataatacccaaatcaccaacacatgatgaacgg 225 Query: 121 gcgcagcatcggcatgctgaaaaagctcaggcacacctggcgcacgtttccacgccttat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 gcgcagcatcggcatgctgaaaaagctcaggcacacctggcgcacgtttccacgccttat 285 Query: 181 ggccaccaaggtgaccagtctgggtggcgacgaggtgggcagtggcacaggaatcggaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 ggccaccaaggtgaccagtctgggtggcgacgaggtgggcagtggcacaggaatcggaca 345 Query: 241 gatcaccggcggcgtgcgtacaagtgatgggccacagaaagtgaacacgccttccaagga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 gatcaccggcggcgtgcgtacaagtgatgggccacagaaagtgaacacgccttccaagga 405 Query: 301 gattgtcacccacctgccacctctcaccgagccactgcccaacctgccggaggccgttta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 gattgtcacccacctgccacctctcaccgagccactgcccaacctgccggaggccgttta 465 Query: 361 cgcagctccactggcggaaagcgccattacgaaggtaacgacgctnccgaacggtctgcg 420 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 466 cgcagctccactggcggaaagcgccattacgaaggtaacgacgctgccgaacggtctgcg 525 Query: 421 gattgcctcggaaccgcggtacggacagttctgcactgtgggcctggttatcgactccgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 gattgcctcggaaccgcggtacggacagttctgcactgtgggcctggttatcgactccgg 585 Query: 481 gccgcgctacgaagtcgcttaccccagcggcgtgtcgcactttctcgaaaagctagcttt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 gccgcgctacgaagtcgcttaccccagcggcgtgtcgcactttctcgaaaagctagcttt 645 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,936 Number of Sequences: 18737 Number of extensions: 10936 Number of successful extensions: 284 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 282 Number of HSP's gapped (non-prelim): 1 length of query: 540 length of database: 41,270,998 effective HSP length: 17 effective length of query: 523 effective length of database: 40,952,469 effective search space: 21418141287 effective search space used: 21418141287 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941652 AW941652|AW941652 LD07701.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD07701 3, mRNA sequence. (510 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9391 Number of Sequences: 18737 Number of extensions: 9391 Number of successful extensions: 195 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 195 Number of HSP's gapped (non-prelim): 0 length of query: 510 length of database: 41,270,998 effective HSP length: 17 effective length of query: 493 effective length of database: 40,952,469 effective search space: 20189567217 effective search space used: 20189567217 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941680 AW941680|AW941680 LD08233.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08233 3 similar to CG5346: FBan0005346 GO:[] located on: 3R 94B5-94B5;: 08/13/2002, mRNA sequence. (375 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5346-RA feature: mRNA loc=3R:complement(18336460..18336764,183... 626 e-179 >CG5346-RA feature: mRNA loc=3R:complement(18336460..18336764,18336882..18337066, 18337413..18338168,18338412..18338527, 18343166..18343461, 18344774..18345039);ID=FBan0005346;gene_id=FBgn0038981;g ene_sym=CG5346;sym=CG5346;scaffold=AE003739;len=1924 Length = 1924 Score = 626 bits (316), Expect = e-179 Identities = 357/375 (95%), Gaps = 2/375 (0%) Strand = Plus / Plus Query: 1 gagacagacgccgttgctctctgcgctagttcaggtgtatctgggttaaattcgcgatcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53 gagacagacgccgttgctctctgcgctagttcaggtgtatctgggttaaattcgcgatcg 112 Query: 61 gagtgtgttacaaaatgatggaaagtgtgcnnnnnnngcagcagaaagcgatacgaaaat 120 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 113 gagtgtgttacaaaatgatggaaagtgtgcaaaaaaagcagcagaaagcgatacgaaaat 172 Query: 121 tgactaactagactgttggccaactgctgttcgttcgggtcgggtgttcgatgaaaagcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 tgactaactagactgttggccaactgctgttcgttcgggtcgggtgttcgatgaaaagcg 232 Query: 181 aaacctgtgcgaaaaaagaaagcgagttttcacttttcatttagtcagccatcgctggaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 aaacctgtgcgaaaaaagaaagcgagttttcacttttcatttagtcagccatcgctggaa 292 Query: 241 gtgcacctcgtctccggatcccggatcctctccggtacccagagtnnnnnnntccatcga 300 ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 293 gtgcacctcgtctccggatcccggatcctctccggtacccagagtcccccct--catcga 350 Query: 301 attgtgataaagatatagcgagcacaagtgcggcgagtgttcgattgctctccccaatca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 attgtgataaagatatagcgagcacaagtgcggcgagtgttcgattgctctccccaatca 410 Query: 361 naaaccaaanaactt 375 |||||||| ||||| Sbjct: 411 gaaaccaaagaactt 425 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6969 Number of Sequences: 18737 Number of extensions: 6969 Number of successful extensions: 557 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 554 Number of HSP's gapped (non-prelim): 2 length of query: 375 length of database: 41,270,998 effective HSP length: 17 effective length of query: 358 effective length of database: 40,952,469 effective search space: 14660983902 effective search space used: 14660983902 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941721 AW941721|AW941721 GH08880.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH08880 3 similar to CG15649: FBan0015649 GO:[] located on: 2R 57B12-57B12;: 08/12/2002, mRNA sequence. (937 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value GNBP2-RB feature: mRNA loc=3L:complement(18622352..18622854,1862... 948 0.0 CG15649-RA feature: mRNA loc=2R:complement(16016763..16016938,16... 724 0.0 GNBP2-RA feature: mRNA loc=3L:complement(18622351..18622854,1862... 676 0.0 GNBP2-RC feature: mRNA loc=3L:complement(18622352..18622854,1862... 563 e-160 GNBP2-RD feature: mRNA loc=3L:complement(18622351..18622854,1862... 559 e-158 >GNBP2-RB feature: mRNA loc=3L:complement(18622352..18622854,18622927..18622983, 18623048..18623361,18623424..18623856, 18624098..18624305);ID=FBan0004144;gene_id=FBgn0040322;g ene_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1515 Length = 1515 Score = 948 bits (478), Expect = 0.0 Identities = 496/501 (99%), Gaps = 1/501 (0%) Strand = Plus / Plus Query: 438 cagagcttctcagattaatacgctaatcggattctagttagtacacatattaagagtaat 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 cagagcttctcagattaatacgctaatcggattctagttagtacacatattaagagtaat 72 Query: 498 taaaactgcgtcatgaggtgggaatttctgccatgtttattattgctcatttcaaacaat 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 taaaactgcgtcatgaggtgggaatttctgccatgtttattattgctcatttcaaacaat 132 Query: 558 aaaatctttggttttaaagtacccagtattaattttgaaatgctaaaggatgaaggattc 617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 aaaatctttggttttaaagtacccagtattaattttgaaatgctaaaggatgaaggattc 192 Query: 618 gaagtgtccataccagatgagcctggcatacagcgggtgttctacatgttccaaattgac 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 gaagtgtccataccagatgagcctggcatacagcgggtgttctacatgttccaaattgac 252 Query: 678 gacacctgcccggctctaatggactacatcacggaggcagtgaacggaagttgggtctcc 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 gacacctgcccggctctaatggactacatcacggaggcagtgaacggaagttgggtctcc 312 Query: 738 aagcaaaagatgagtctgcagaacaacgacaagctgcagatatcaatgctggtgcagttc 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 aagcaaaagatgagtctgcagaacaacgacaagctgcagatatcaatgctggtgcagttc 372 Query: 798 aatgaggaaatcttcgaaaagagtg-aaccagggtgatcataaacacacggctactgagc 856 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | Sbjct: 373 aatgaggaaatcttcgaaaagagtgaaaccagggtgatcataaacacccggctactgacc 432 Query: 857 accanagactctagctcgcgaggcatatcattccttacaggagagggcgagtgccaggca 916 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 433 accaaagactctagctcgcgaggcataacattccttacaggagagggcgagtgccaggca 492 Query: 917 tacctagctcctgcacagcaa 937 ||||||||||||||||||||| Sbjct: 493 tacctagctcctgcacagcaa 513 >CG15649-RA feature: mRNA loc=2R:complement(16016763..16016938,16017002..16017178, 16017452..16017475);ID=FBan0015649;gene_id=FBgn0034563;g ene_sym=CG15649;sym=CG15649;scaffold=AE003452;len=377 Length = 377 Score = 724 bits (365), Expect = 0.0 Identities = 375/377 (99%), Gaps = 1/377 (0%) Strand = Plus / Minus Query: 1 aaatttaaatcataattatttatggctaagccggtggaggcggatagttcacattgtgtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 aaatttaaatcataattatttatggctaagccggtggaggcggatagttcacattgtgtt 317 Query: 61 ccccattcagtcgttccacatcgcgatgtccttgctccgcccgccgctcctcgtgccgcc 120 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 ccccattcagtcgtcccacatcgcgatgtccttgctccgcccgccgctcctcgtgccgcc 257 Query: 121 catccagaccaacgcccagtcgctcgatgaatttggacgagcggaatccgttcttctcgt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 catccagaccaacgcccagtcgctcgatgaatttggacgagcggaatccgttcttctcgt 197 Query: 181 agtacatgcgatctggccctcttggccgcctccggatcaaagtcccaagaagtccgctcg 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 agtaca-gcgatctggccctcttggccgcctccggatcaaagtcccaagaagtccgctcg 138 Query: 241 tgaagaaccggctcaccagccacgttattctgcagtgtctccgtaatcagtcgaatgata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 tgaagaaccggctcaccagccacgttattctgcagtgtctccgtaatcagtcgaatgata 78 Query: 301 aagccatctgcaggtggactaaactgaagtagaagcaacagcagcagcggtaaagcggcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 aagccatctgcaggtggactaaactgaagtagaagcaacagcagcagcggtaaagcggcc 18 Query: 361 ataaagacaaatctcag 377 ||||||||||||||||| Sbjct: 17 ataaagacaaatctcag 1 >GNBP2-RA feature: mRNA loc=3L:complement(18622351..18622854,18622927..18622983, 18623048..18623361,18623424..18623856, 18624098..18624154, 18624217..18624292);ID=FBan0004144;gene_id=FBgn0040322;g ene_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1441 Length = 1441 Score = 676 bits (341), Expect = 0.0 Identities = 359/364 (98%), Gaps = 1/364 (0%) Strand = Plus / Plus Query: 575 agtacccagtattaattttgaaatgctaaaggatgaaggattcgaagtgtccataccaga 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 agtacccagtattaattttgaaatgctaaaggatgaaggattcgaagtgtccataccaga 134 Query: 635 tgagcctggcatacagcgggtgttctacatgttccaaattgacgacacctgcccggctct 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 tgagcctggcatacagcgggtgttctacatgttccaaattgacgacacctgcccggctct 194 Query: 695 aatggactacatcacggaggcagtgaacggaagttgggtctccaagcaaaagatgagtct 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 aatggactacatcacggaggcagtgaacggaagttgggtctccaagcaaaagatgagtct 254 Query: 755 gcagaacaacgacaagctgcagatatcaatgctggtgcagttcaatgaggaaatcttcga 814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 gcagaacaacgacaagctgcagatatcaatgctggtgcagttcaatgaggaaatcttcga 314 Query: 815 aaagagtg-aaccagggtgatcataaacacacggctactgagcaccanagactctagctc 873 |||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||| Sbjct: 315 aaagagtgaaaccagggtgatcataaacacccggctactgaccaccaaagactctagctc 374 Query: 874 gcgaggcatatcattccttacaggagagggcgagtgccaggcatacctagctcctgcaca 933 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 gcgaggcataacattccttacaggagagggcgagtgccaggcatacctagctcctgcaca 434 Query: 934 gcaa 937 |||| Sbjct: 435 gcaa 438 >GNBP2-RC feature: mRNA loc=3L:complement(18622352..18622854,18622927..18623361, 18623424..18623856, 18624217..18624273);ID=FBan0004144;gene_id=FBgn0040322;g ene_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1428 Length = 1428 Score = 563 bits (284), Expect = e-160 Identities = 302/307 (98%), Gaps = 1/307 (0%) Strand = Plus / Plus Query: 632 agatgagcctggcatacagcgggtgttctacatgttccaaattgacgacacctgcccggc 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 agatgagcctggcatacagcgggtgttctacatgttccaaattgacgacacctgcccggc 115 Query: 692 tctaatggactacatcacggaggcagtgaacggaagttgggtctccaagcaaaagatgag 751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116 tctaatggactacatcacggaggcagtgaacggaagttgggtctccaagcaaaagatgag 175 Query: 752 tctgcagaacaacgacaagctgcagatatcaatgctggtgcagttcaatgaggaaatctt 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 176 tctgcagaacaacgacaagctgcagatatcaatgctggtgcagttcaatgaggaaatctt 235 Query: 812 cgaaaagagtg-aaccagggtgatcataaacacacggctactgagcaccanagactctag 870 ||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||||| Sbjct: 236 cgaaaagagtgaaaccagggtgatcataaacacccggctactgaccaccaaagactctag 295 Query: 871 ctcgcgaggcatatcattccttacaggagagggcgagtgccaggcatacctagctcctgc 930 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 ctcgcgaggcataacattccttacaggagagggcgagtgccaggcatacctagctcctgc 355 Query: 931 acagcaa 937 ||||||| Sbjct: 356 acagcaa 362 >GNBP2-RD feature: mRNA loc=3L:complement(18622351..18622854,18622927..18622983, 18623048..18623361,18623424..18623856, 18624258..18624292);ID=FBan0004144;gene_id=FBgn0040322;g ene_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1343 Length = 1343 Score = 559 bits (282), Expect = e-158 Identities = 300/305 (98%), Gaps = 1/305 (0%) Strand = Plus / Plus Query: 634 atgagcctggcatacagcgggtgttctacatgttccaaattgacgacacctgcccggctc 693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36 atgagcctggcatacagcgggtgttctacatgttccaaattgacgacacctgcccggctc 95 Query: 694 taatggactacatcacggaggcagtgaacggaagttgggtctccaagcaaaagatgagtc 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 taatggactacatcacggaggcagtgaacggaagttgggtctccaagcaaaagatgagtc 155 Query: 754 tgcagaacaacgacaagctgcagatatcaatgctggtgcagttcaatgaggaaatcttcg 813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 156 tgcagaacaacgacaagctgcagatatcaatgctggtgcagttcaatgaggaaatcttcg 215 Query: 814 aaaagagtg-aaccagggtgatcataaacacacggctactgagcaccanagactctagct 872 ||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||||||| Sbjct: 216 aaaagagtgaaaccagggtgatcataaacacccggctactgaccaccaaagactctagct 275 Query: 873 cgcgaggcatatcattccttacaggagagggcgagtgccaggcatacctagctcctgcac 932 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 276 cgcgaggcataacattccttacaggagagggcgagtgccaggcatacctagctcctgcac 335 Query: 933 agcaa 937 ||||| Sbjct: 336 agcaa 340 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,410 Number of Sequences: 18737 Number of extensions: 27410 Number of successful extensions: 2050 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2037 Number of HSP's gapped (non-prelim): 8 length of query: 937 length of database: 41,270,998 effective HSP length: 18 effective length of query: 919 effective length of database: 40,933,732 effective search space: 37618099708 effective search space used: 37618099708 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941813 AW941813|AW941813 GH15538.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH15538 3, mRNA sequence. (517 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,362 Number of Sequences: 18737 Number of extensions: 11362 Number of successful extensions: 233 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 233 Number of HSP's gapped (non-prelim): 0 length of query: 517 length of database: 41,270,998 effective HSP length: 17 effective length of query: 500 effective length of database: 40,952,469 effective search space: 20476234500 effective search space used: 20476234500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941840 AW941840|AW941840 GH20809.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20809 3, mRNA sequence. (521 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9487 Number of Sequences: 18737 Number of extensions: 9487 Number of successful extensions: 161 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 161 Number of HSP's gapped (non-prelim): 0 length of query: 521 length of database: 41,270,998 effective HSP length: 17 effective length of query: 504 effective length of database: 40,952,469 effective search space: 20640044376 effective search space used: 20640044376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941903 AW941903|AW941903 GH27201.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH27201 3, mRNA sequence. (626 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9850 Number of Sequences: 18737 Number of extensions: 9850 Number of successful extensions: 237 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 237 Number of HSP's gapped (non-prelim): 0 length of query: 626 length of database: 41,270,998 effective HSP length: 17 effective length of query: 609 effective length of database: 40,952,469 effective search space: 24940053621 effective search space used: 24940053621 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941937 AW941937|AW941937 GM03761.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03761 3, mRNA sequence. (494 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR33328-RA feature: ncRNA loc=3R:complement(9463445..9466209);ID... 486 e-137 >CR33328-RA feature: ncRNA loc=3R:complement(9463445..9466209);ID=FBan0033328;gene_i d=FBgn0053328;gene_sym=CR33328;sym=CR33328;type=ncRNA;sca ffold=AE003701;len=2765 Length = 2765 Score = 486 bits (245), Expect = e-137 Identities = 245/245 (100%) Strand = Plus / Minus Query: 16 cgtttttcttttatttgctcatttttcttgtttgtggattttgattataagattgatggt 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2751 cgtttttcttttatttgctcatttttcttgtttgtggattttgattataagattgatggt 2692 Query: 76 taaaatgttgctctaacatgtgtagttgtcgattgttgtagctgttggttgctggtacac 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2691 taaaatgttgctctaacatgtgtagttgtcgattgttgtagctgttggttgctggtacac 2632 Query: 136 aataaaaatttaaaaaacaattttcactcgctttcctcttgcaaatgtcgaggaaaatgg 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2631 aataaaaatttaaaaaacaattttcactcgctttcctcttgcaaatgtcgaggaaaatgg 2572 Query: 196 cgcaaggcggcgctcacacatacatgcggttctcgattggattggtggttgttatttcgc 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2571 cgcaaggcggcgctcacacatacatgcggttctcgattggattggtggttgttatttcgc 2512 Query: 256 ttcgt 260 ||||| Sbjct: 2511 ttcgt 2507 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,785 Number of Sequences: 18737 Number of extensions: 11785 Number of successful extensions: 296 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 291 Number of HSP's gapped (non-prelim): 5 length of query: 494 length of database: 41,270,998 effective HSP length: 17 effective length of query: 477 effective length of database: 40,952,469 effective search space: 19534327713 effective search space used: 19534327713 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941943 AW941943|AW941943 GM03914.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03914 3, mRNA sequence. (602 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,888 Number of Sequences: 18737 Number of extensions: 15888 Number of successful extensions: 405 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 405 Number of HSP's gapped (non-prelim): 0 length of query: 602 length of database: 41,270,998 effective HSP length: 17 effective length of query: 585 effective length of database: 40,952,469 effective search space: 23957194365 effective search space used: 23957194365 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941949 AW941949|AW941949 GM05844.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM05844 3, mRNA sequence. (746 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,124 Number of Sequences: 18737 Number of extensions: 16124 Number of successful extensions: 414 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 414 Number of HSP's gapped (non-prelim): 0 length of query: 746 length of database: 41,270,998 effective HSP length: 17 effective length of query: 729 effective length of database: 40,952,469 effective search space: 29854349901 effective search space used: 29854349901 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941957 AW941957|AW941957 GM06547.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06547 3, mRNA sequence. (495 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9266-RB feature: mRNA loc=2L:complement(20935261..20937488,209... 781 0.0 >CG9266-RB feature: mRNA loc=2L:complement(20935261..20937488, 20938529..20938685);ID=FBan0009266;gene_id=FBgn0032909;ge ne_sym=CG9266;sym=CG9266;scaffold=AE003668;len=2385 Length = 2385 Score = 781 bits (394), Expect = 0.0 Identities = 472/497 (94%), Gaps = 2/497 (0%) Strand = Plus / Minus Query: 1 attttatataaattagtttttattttcagatcttaaagttagttaacacagttgtcaggg 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2384 attttatataaattagtttttatttttagatcttaaagttagttaacacagttgtcaggg 2325 Query: 61 tgcggacggaatcagttaataatttgtacatatt--cagtttgttttacaatttatgcag 118 ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| Sbjct: 2324 tgcggacggaatcagttaataatttgtacattcttgcagtttgttttacactttatgcag 2265 Query: 119 gcaataagatcacctaatttctacagttcagattataatcataatttcttaagcacaagc 178 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2264 gcattaagatcacctaatttctacagttcagattataatcataatttcttgagcacaagc 2205 Query: 179 atttcggtttccacacataatttagtttttatacaactttttgaaatacaaggcagccct 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2204 atttcggtttccacacataatttagtttttatacaactttttgaaatacaaggcagccct 2145 Query: 239 aatttacattactagcttttaagcataatttcttttaagaaatataccttttagctatag 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2144 aatttacattactagcttttaagcataatttcttttaagaaatataccttttagctatag 2085 Query: 299 tgctacagtctataggcgatttgacgtttttataaacaatatatacatttccatttcgga 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2084 tgctacagtctataggcgatttgacgtttttataaacaatatatacatttccatttcgta 2025 Query: 359 tactttgagtcgggctactgacttccagaatttccaaatggatccccagtgtagtcggat 418 |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| || Sbjct: 2024 tactttgagtcgggctactgacttccagaatttcaaaatgtatcccaagtgtagtcgaat 1965 Query: 419 cccggcaaatttattatccccgacatctgggggcggtccaggtggttaatttttgggcgg 478 || |||||||||||||||| |||||||||| | || |||||||| ||| ||||||| || Sbjct: 1964 cctggcaaatttattatcctcgacatctggcgtcgttccaggtgtttattttttggctgg 1905 Query: 479 ggggatcaatccagcgc 495 || ||||||| ||||| Sbjct: 1904 tggaatcaatcaagcgc 1888 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,668 Number of Sequences: 18737 Number of extensions: 11668 Number of successful extensions: 314 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 312 Number of HSP's gapped (non-prelim): 1 length of query: 495 length of database: 41,270,998 effective HSP length: 17 effective length of query: 478 effective length of database: 40,952,469 effective search space: 19575280182 effective search space used: 19575280182 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941960 AW941960|AW941960 GM08821.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM08821 3, mRNA sequence. (670 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,845 Number of Sequences: 18737 Number of extensions: 18845 Number of successful extensions: 909 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 909 Number of HSP's gapped (non-prelim): 0 length of query: 670 length of database: 41,270,998 effective HSP length: 17 effective length of query: 653 effective length of database: 40,952,469 effective search space: 26741962257 effective search space used: 26741962257 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941969 AW941969|AW941969 GM09534.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM09534 3, mRNA sequence. (450 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8048 Number of Sequences: 18737 Number of extensions: 8048 Number of successful extensions: 659 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 659 Number of HSP's gapped (non-prelim): 0 length of query: 450 length of database: 41,270,998 effective HSP length: 17 effective length of query: 433 effective length of database: 40,952,469 effective search space: 17732419077 effective search space used: 17732419077 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941975 AW941975|AW941975 GM10308.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM10308 3, mRNA sequence. (683 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,951 Number of Sequences: 18737 Number of extensions: 11951 Number of successful extensions: 197 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 197 Number of HSP's gapped (non-prelim): 0 length of query: 683 length of database: 41,270,998 effective HSP length: 17 effective length of query: 666 effective length of database: 40,952,469 effective search space: 27274344354 effective search space used: 27274344354 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW941996 AW941996|AW941996 HL01468.3prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL01468 3, mRNA sequence. (545 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,005 Number of Sequences: 18737 Number of extensions: 13005 Number of successful extensions: 421 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 421 Number of HSP's gapped (non-prelim): 0 length of query: 545 length of database: 41,270,998 effective HSP length: 17 effective length of query: 528 effective length of database: 40,952,469 effective search space: 21622903632 effective search space used: 21622903632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW942064 AW942064|AW942064 LD08911.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08911 3 similar to CG9253: FBan0009253 GO:[ATP dependent RNA helicase (GO:0004004); RNA helicase (GO:0003724)] located on: 2L 39B1-39B2;: 08/13/2002, mRNA sequence. (589 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9253-RA feature: mRNA loc=2L:join(21112976..21113247,21113308.... 1154 0.0 >CG9253-RA feature: mRNA loc=2L:join(21112976..21113247,21113308..21113566, 21113756..21114895);ID=FBan0009253;gene_id=FBgn0032919;g ene_sym=CG9253;sym=CG9253;scaffold=AE003669;len=1671 Length = 1671 Score = 1154 bits (582), Expect = 0.0 Identities = 587/589 (99%) Strand = Plus / Plus Query: 1 cgaccacgtgctgctattggtaatgtccgtaccgtgaaatttttctgaaactcatgtaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12 cgaccacgtgctgctattggtaatgtccgtaccgtgaaatttttctgaaactcatgtaac 71 Query: 61 aaaatgtcggaaacttcagaggacgaacagacgcagctacaaacgagtgacgaagaggag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 aaaatgtcggaaacttcagaggacgaacagacgcagctacaaacgagtgacgaagaggag 131 Query: 121 gatctaggtagcgaggaggagcaggaagatgaagataacaatcataaggaaggggacagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 gatctaggtagcgaggaggagcaggaagatgaagataacaatcataaggaaggggacagc 191 Query: 181 gaggcggcactaagtggtgaagatgataaaggctccgaggacgacgcagccgaggaacag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 gaggcggcactaagtggtgaagatgataaaggctccgaggacgacgcagccgaggaacag 251 Query: 241 aagctaacctggaaagatctcggtctcaatgaggctttgtgtcaagcatgtgacgaattg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 aagctaacctggaaagatctcggtctcaatgaggctttgtgtcaagcatgtgacgaattg 311 Query: 301 aagtggaaggcgccttcgaagatccaacgtgaggccattccggtcgccttacagggcaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 aagtggaaggcgccttcgaagatccaacgtgaggccattccggtcgccttacagggcaag 371 Query: 361 gatgtaattggcctagcggagaccggttccggcaagacgggcgccttcgctctgccaatt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 gatgtaattggcctagcggagaccggttccggcaagacgggcgccttcgctctgccaatt 431 Query: 421 ttacacgcccttctcgagaatccgcagcggtattttgccctcgtgctaacccccacgagg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 ttacacgcccttctcgagaatccgcagcggtattttgccctcgtgctaacccccacgagg 491 Query: 481 gaactggcatttcaaattggcgagcagtttgaagcccttggtagcgggattggcataaag 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 gaactggcatttcaaattggcgagcagtttgaagcccttggtagcgggattggcataaag 551 Query: 541 tgttgcgtggtantcggcggcatggacatggtagcccaaggtcttcaac 589 |||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 552 tgttgcgtggtagtcggcggcatggacatggtagcccagggtcttcaac 600 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,042 Number of Sequences: 18737 Number of extensions: 14042 Number of successful extensions: 405 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 404 Number of HSP's gapped (non-prelim): 1 length of query: 589 length of database: 41,270,998 effective HSP length: 17 effective length of query: 572 effective length of database: 40,952,469 effective search space: 23424812268 effective search space used: 23424812268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW942209 AW942209|AW942209 LD11885.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD11885 3, mRNA sequence. (557 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,757 Number of Sequences: 18737 Number of extensions: 16757 Number of successful extensions: 512 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 512 Number of HSP's gapped (non-prelim): 0 length of query: 557 length of database: 41,270,998 effective HSP length: 17 effective length of query: 540 effective length of database: 40,952,469 effective search space: 22114333260 effective search space used: 22114333260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW942312 AW942312|AW942312 LD14406.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD14406 3, mRNA sequence. (571 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,037 Number of Sequences: 18737 Number of extensions: 10037 Number of successful extensions: 246 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 246 Number of HSP's gapped (non-prelim): 0 length of query: 571 length of database: 41,270,998 effective HSP length: 17 effective length of query: 554 effective length of database: 40,952,469 effective search space: 22687667826 effective search space used: 22687667826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW942426 AW942426|AW942426 LD16711.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD16711 3, mRNA sequence. (605 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,302 Number of Sequences: 18737 Number of extensions: 12302 Number of successful extensions: 275 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 275 Number of HSP's gapped (non-prelim): 0 length of query: 605 length of database: 41,270,998 effective HSP length: 17 effective length of query: 588 effective length of database: 40,952,469 effective search space: 24080051772 effective search space used: 24080051772 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW942537 AW942537|AW942537 LD19629.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD19629 3, mRNA sequence. (373 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6242 Number of Sequences: 18737 Number of extensions: 6242 Number of successful extensions: 499 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 499 Number of HSP's gapped (non-prelim): 0 length of query: 373 length of database: 41,270,998 effective HSP length: 17 effective length of query: 356 effective length of database: 40,952,469 effective search space: 14579078964 effective search space used: 14579078964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW942885 AW942885|AW942885 LD28384.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD28384 3, mRNA sequence. (738 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,021 Number of Sequences: 18737 Number of extensions: 13021 Number of successful extensions: 338 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 338 Number of HSP's gapped (non-prelim): 0 length of query: 738 length of database: 41,270,998 effective HSP length: 17 effective length of query: 721 effective length of database: 40,952,469 effective search space: 29526730149 effective search space used: 29526730149 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW942998 AW942998|AW942998 LD29917.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD29917 3, mRNA sequence. (629 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,698 Number of Sequences: 18737 Number of extensions: 16698 Number of successful extensions: 548 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 548 Number of HSP's gapped (non-prelim): 0 length of query: 629 length of database: 41,270,998 effective HSP length: 17 effective length of query: 612 effective length of database: 40,952,469 effective search space: 25062911028 effective search space used: 25062911028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW943187 AW943187|AW943187 LD33458.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD33458 3, mRNA sequence. (546 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9657 Number of Sequences: 18737 Number of extensions: 9657 Number of successful extensions: 199 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 199 Number of HSP's gapped (non-prelim): 0 length of query: 546 length of database: 41,270,998 effective HSP length: 17 effective length of query: 529 effective length of database: 40,952,469 effective search space: 21663856101 effective search space used: 21663856101 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW943815 AW943815|AW943815 LD45965.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD45965 3, mRNA sequence. (644 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,915 Number of Sequences: 18737 Number of extensions: 14915 Number of successful extensions: 357 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 357 Number of HSP's gapped (non-prelim): 0 length of query: 644 length of database: 41,270,998 effective HSP length: 17 effective length of query: 627 effective length of database: 40,952,469 effective search space: 25677198063 effective search space used: 25677198063 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW943857 AW943857|AW943857 LD46618.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD46618 3 similar to AC007121: Drosophila melanogaster, chromosome 2R, region 42A8-42A16, P1 clones DS06954 and DS05325, complete sequence, mRNA sequence. (546 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9700 Number of Sequences: 18737 Number of extensions: 9700 Number of successful extensions: 168 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 168 Number of HSP's gapped (non-prelim): 0 length of query: 546 length of database: 41,270,998 effective HSP length: 17 effective length of query: 529 effective length of database: 40,952,469 effective search space: 21663856101 effective search space used: 21663856101 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944113 AW944113|AW944113 LP09564.3prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP09564 3, mRNA sequence. (532 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,777 Number of Sequences: 18737 Number of extensions: 11777 Number of successful extensions: 309 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 309 Number of HSP's gapped (non-prelim): 0 length of query: 532 length of database: 41,270,998 effective HSP length: 17 effective length of query: 515 effective length of database: 40,952,469 effective search space: 21090521535 effective search space used: 21090521535 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944213 AW944213|AW944213 SD02026.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD02026 3 similar to AC007177: Drosophila melanogaster, chromosome 2R, region 59C1-59C5, P1 clones DS06621 and DS02186, complete sequence, mRNA sequence. (517 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,511 Number of Sequences: 18737 Number of extensions: 12511 Number of successful extensions: 209 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 209 Number of HSP's gapped (non-prelim): 0 length of query: 517 length of database: 41,270,998 effective HSP length: 17 effective length of query: 500 effective length of database: 40,952,469 effective search space: 20476234500 effective search space used: 20476234500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944240 AW944240|AW944240 SD02447.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD02447 3, mRNA sequence. (430 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9574 Number of Sequences: 18737 Number of extensions: 9574 Number of successful extensions: 821 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 821 Number of HSP's gapped (non-prelim): 0 length of query: 430 length of database: 41,270,998 effective HSP length: 17 effective length of query: 413 effective length of database: 40,952,469 effective search space: 16913369697 effective search space used: 16913369697 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944242 AW944242|AW944242 SD02481.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD02481 3, mRNA sequence. (671 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,634 Number of Sequences: 18737 Number of extensions: 14634 Number of successful extensions: 282 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 282 Number of HSP's gapped (non-prelim): 0 length of query: 671 length of database: 41,270,998 effective HSP length: 17 effective length of query: 654 effective length of database: 40,952,469 effective search space: 26782914726 effective search space used: 26782914726 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944288 AW944288|AW944288 SD03144.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD03144 3, mRNA sequence. (397 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9767 Number of Sequences: 18737 Number of extensions: 9767 Number of successful extensions: 756 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 756 Number of HSP's gapped (non-prelim): 0 length of query: 397 length of database: 41,270,998 effective HSP length: 17 effective length of query: 380 effective length of database: 40,952,469 effective search space: 15561938220 effective search space used: 15561938220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944300 AW944300|AW944300 SD03311.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD03311 3 similar to X83507: D.melanogaster DNA for complete tirant LTR, mRNA sequence. (284 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4682 Number of Sequences: 18737 Number of extensions: 4682 Number of successful extensions: 325 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 325 Number of HSP's gapped (non-prelim): 0 length of query: 284 length of database: 41,270,998 effective HSP length: 16 effective length of query: 268 effective length of database: 40,971,206 effective search space: 10980283208 effective search space used: 10980283208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944361 AW944361|AW944361 SD04448.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04448 3, mRNA sequence. (429 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6695 Number of Sequences: 18737 Number of extensions: 6695 Number of successful extensions: 544 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 544 Number of HSP's gapped (non-prelim): 0 length of query: 429 length of database: 41,270,998 effective HSP length: 17 effective length of query: 412 effective length of database: 40,952,469 effective search space: 16872417228 effective search space used: 16872417228 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944365 AW944365|AW944365 SD04493.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04493 3, mRNA sequence. (805 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,561 Number of Sequences: 18737 Number of extensions: 16561 Number of successful extensions: 359 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 359 Number of HSP's gapped (non-prelim): 0 length of query: 805 length of database: 41,270,998 effective HSP length: 17 effective length of query: 788 effective length of database: 40,952,469 effective search space: 32270545572 effective search space used: 32270545572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944372 AW944372|AW944372 SD04624.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04624 3, mRNA sequence. (474 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,511 Number of Sequences: 18737 Number of extensions: 10511 Number of successful extensions: 298 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 298 Number of HSP's gapped (non-prelim): 0 length of query: 474 length of database: 41,270,998 effective HSP length: 17 effective length of query: 457 effective length of database: 40,952,469 effective search space: 18715278333 effective search space used: 18715278333 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944382 AW944382|AW944382 SD04739.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04739 3, mRNA sequence. (565 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,419 Number of Sequences: 18737 Number of extensions: 11419 Number of successful extensions: 219 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 219 Number of HSP's gapped (non-prelim): 0 length of query: 565 length of database: 41,270,998 effective HSP length: 17 effective length of query: 548 effective length of database: 40,952,469 effective search space: 22441953012 effective search space used: 22441953012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944464 AW944464|AW944464 SD06617.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD06617 3, mRNA sequence. (726 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,465 Number of Sequences: 18737 Number of extensions: 11465 Number of successful extensions: 405 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 405 Number of HSP's gapped (non-prelim): 0 length of query: 726 length of database: 41,270,998 effective HSP length: 17 effective length of query: 709 effective length of database: 40,952,469 effective search space: 29035300521 effective search space used: 29035300521 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944475 AW944475|AW944475 SD06908.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD06908 3 similar to AC004442: Drosophila melanogaster, chromosome 2L, region 22A3-22A7, P1 clone DS04260, complete sequence, mRNA sequence. (365 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,621 Number of Sequences: 18737 Number of extensions: 15621 Number of successful extensions: 575 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 575 Number of HSP's gapped (non-prelim): 0 length of query: 365 length of database: 41,270,998 effective HSP length: 17 effective length of query: 348 effective length of database: 40,952,469 effective search space: 14251459212 effective search space used: 14251459212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944518 AW944518|AW944518 SD07683.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD07683 3, mRNA sequence. (743 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,484 Number of Sequences: 18737 Number of extensions: 13484 Number of successful extensions: 229 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 229 Number of HSP's gapped (non-prelim): 0 length of query: 743 length of database: 41,270,998 effective HSP length: 17 effective length of query: 726 effective length of database: 40,952,469 effective search space: 29731492494 effective search space used: 29731492494 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944568 AW944568|AW944568 SD08734.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD08734 3 similar to X01472: Drosophila melanogaster copia-like element 17.6, mRNA sequence. (535 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,661 Number of Sequences: 18737 Number of extensions: 12661 Number of successful extensions: 236 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 236 Number of HSP's gapped (non-prelim): 0 length of query: 535 length of database: 41,270,998 effective HSP length: 17 effective length of query: 518 effective length of database: 40,952,469 effective search space: 21213378942 effective search space used: 21213378942 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944598 AW944598|AW944598 SD09455.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD09455 3, mRNA sequence. (463 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31044-RA feature: mRNA loc=3R:25032002..25034755;ID=FBan003104... 634 0.0 >CG31044-RA feature: mRNA loc=3R:25032002..25034755;ID=FBan0031044;gene_id=FBgn0051 044;gene_sym=CG31044;sym=CG31044;scaffold=AE003768;len=27 54 Length = 2754 Score = 634 bits (320), Expect = 0.0 Identities = 354/368 (96%) Strand = Plus / Minus Query: 96 ttgacatcctgcagttattctgttgttcaggtcaatgatctgaatattgaacatttttta 155 |||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2688 ttgacatccttaagttcttctgttgtttaggtcaatgatctgaatattgaacatttttta 2629 Query: 156 tctcacattaaatatttgccgtgttcaaaaaccaagaagccaaagacgacgcattactta 215 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2628 tctcacattaaatatttgccgtgttcataaaccaagaagccaaagacgacgcattactta 2569 Query: 216 atgaaaaccattacaggtactttatttagatgctacaaacatgatcactacgttcccccc 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2568 atgaaaaccattacaggtactttatttagatgctacaaacatgatcactacgttcccccc 2509 Query: 276 acccctgcagaatgcatcagcatcgaatcgatcgagggccttccttctcgacagcatcct 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2508 acccctgcagaatgcatcagcatcgaatcgatcgagggccttccttctcgacagcatcct 2449 Query: 336 cnnnnnnnnccgaacggaaatgccgcgcattgggacggactgagtgactgagtccgtgtc 395 | ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2448 cttttttttccgaacggaaatgccgcgcattgggacggactgagtgactgagtcggtgtc 2389 Query: 396 ccggggatcggggcaaacatttttccagctgccgccgtcgtagagttcaagttctgcatt 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2388 ccggggatcggggcaaacatttttccagctgccgccgtcgtagagttcaagttctgcatt 2329 Query: 456 gctctaat 463 |||||||| Sbjct: 2328 gctctaat 2321 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,287 Number of Sequences: 18737 Number of extensions: 11287 Number of successful extensions: 265 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 260 Number of HSP's gapped (non-prelim): 5 length of query: 463 length of database: 41,270,998 effective HSP length: 17 effective length of query: 446 effective length of database: 40,952,469 effective search space: 18264801174 effective search space used: 18264801174 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944642 AW944642|AW944642 SD10530.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD10530 3 similar to M11240: D.melanogaster copia element inserted at white-apricot allele, mRNA sequence. (435 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9609 Number of Sequences: 18737 Number of extensions: 9609 Number of successful extensions: 792 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 792 Number of HSP's gapped (non-prelim): 0 length of query: 435 length of database: 41,270,998 effective HSP length: 17 effective length of query: 418 effective length of database: 40,952,469 effective search space: 17118132042 effective search space used: 17118132042 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AW944673 AW944673|AW944673 SD10988.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD10988 3, mRNA sequence. (467 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8738 Number of Sequences: 18737 Number of extensions: 8738 Number of successful extensions: 155 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 155 Number of HSP's gapped (non-prelim): 0 length of query: 467 length of database: 41,270,998 effective HSP length: 17 effective length of query: 450 effective length of database: 40,952,469 effective search space: 18428611050 effective search space used: 18428611050 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF486344 BF486344|BF486344 AT20617.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT20617 5, mRNA sequence. (661 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11584-RB feature: mRNA loc=X:join(13911689..13911759,13911851.... 513 e-145 >CG11584-RB feature: mRNA loc=X:join(13911689..13911759, 13911851..13913980);ID=FBan0011584;gene_id=FBgn0030541;ge ne_sym=CG11584;sym=CG11584;scaffold=AE003495;len=2201 Length = 2201 Score = 513 bits (259), Expect = e-145 Identities = 268/271 (98%) Strand = Plus / Minus Query: 391 gctgaatcacaggtgcttgctgagccactgcctgaaccactggcgcttgctggaccactg 450 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 gctgaaccacaggtgcttgctgagccactgcctgaaccactggcgcttgctggaccactg 1159 Query: 451 gagctggataggaataggtctgctgagcaactggagctggagccggagcactgtagctct 510 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1158 gagctggataggaataggtctgctgagcaactggagcgggagccggagcactgtagctct 1099 Query: 511 gaaccacctgagcttgctcctggactgctggagctggagcggagtaagtctgctgcggtg 570 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1098 gaaccacctgagtttgctcctggactgctggagctggagcggagtaagtctgctgcggtg 1039 Query: 571 ccggagcaggggcggagtaggtctgctgaacgacaggagcaggagctggagcagagtaag 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 ccggagcaggggcggagtaggtctgctgaacgacaggagcaggagctggagcagagtaag 979 Query: 631 tctgctgaatggctggggcaggagcactata 661 ||||||||||||||||||||||||||||||| Sbjct: 978 tctgctgaatggctggggcaggagcactata 948 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,844 Number of Sequences: 18737 Number of extensions: 25844 Number of successful extensions: 1396 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1286 Number of HSP's gapped (non-prelim): 84 length of query: 661 length of database: 41,270,998 effective HSP length: 17 effective length of query: 644 effective length of database: 40,952,469 effective search space: 26373390036 effective search space used: 26373390036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF486767 BF486767|BF486767 AT21289.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT21289 5, mRNA sequence. (442 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,163 Number of Sequences: 18737 Number of extensions: 13163 Number of successful extensions: 2099 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2099 Number of HSP's gapped (non-prelim): 0 length of query: 442 length of database: 41,270,998 effective HSP length: 17 effective length of query: 425 effective length of database: 40,952,469 effective search space: 17404799325 effective search space used: 17404799325 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF487371 BF487371|BF487371 AT22150.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT22150 5, mRNA sequence. (493 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,886 Number of Sequences: 18737 Number of extensions: 12886 Number of successful extensions: 520 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 520 Number of HSP's gapped (non-prelim): 0 length of query: 493 length of database: 41,270,998 effective HSP length: 17 effective length of query: 476 effective length of database: 40,952,469 effective search space: 19493375244 effective search space used: 19493375244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF488968 BF488968|BF488968 AT24650.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT24650 5, mRNA sequence. (573 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,768 Number of Sequences: 18737 Number of extensions: 10768 Number of successful extensions: 212 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 212 Number of HSP's gapped (non-prelim): 0 length of query: 573 length of database: 41,270,998 effective HSP length: 17 effective length of query: 556 effective length of database: 40,952,469 effective search space: 22769572764 effective search space used: 22769572764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF489188 BF489188|BF489188 AT25114.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT25114 5 similar to MESR6: FBan0006818 GO:[] located on: 3L 75F6-75F6;: 08/12/2002, mRNA sequence. (693 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value MESR6-RA feature: mRNA loc=3L:join(19041551..19042199,19042542..... 1031 0.0 >MESR6-RA feature: mRNA loc=3L:join(19041551..19042199, 19042542..19043639);ID=FBan0006818;gene_id=FBgn0036846;ge ne_sym=MESR6;sym=CG6818;scaffold=AE003518;len=1747 Length = 1747 Score = 1031 bits (520), Expect = 0.0 Identities = 523/524 (99%) Strand = Plus / Minus Query: 170 ctgatcggccagtttcacaatcttggcgtacacttcgggcgtgaccacggtctcgtcagg 229 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1215 ctgatcggccagtttcacaatcttggcgtacacttcgggcgtgaccacggtctcgtccgg 1156 Query: 230 cttttccagtccctcgaaattgcgctcctcctccagatgccagaaaatcgtcttcagtgc 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1155 cttttccagtccctcgaaattgcgctcctcctccagatgccagaaaatcgtcttcagtgc 1096 Query: 290 atccaactgagtctgtcgcctctctgccgtggccaaataatctgctatagtagccgtgcc 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1095 atccaactgagtctgtcgcctctctgccgtggccaaataatctgctatagtagccgtgcc 1036 Query: 350 cgacttcttcaccttctccacgctttcgaagtggaagatctcctttagctgattgtagca 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1035 cgacttcttcaccttctccacgctttcgaagtggaagatctcctttagctgattgtagca 976 Query: 410 atcggcatccttgtatatttccaagaaggggttggaggtgctgaaaaagtcgaggtctat 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 975 atcggcatccttgtatatttccaagaaggggttggaggtgctgaaaaagtcgaggtctat 916 Query: 470 gtccagcacgaatcccttggcgtccttctccgttaggaattcgttcggattgaggctttc 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 915 gtccagcacgaatcccttggcgtccttctccgttaggaattcgttcggattgaggctttc 856 Query: 530 gttgtctgcatcgtgaacctgcagctccacgctcttggcatcctgcagatcctccgtagt 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 855 gttgtctgcatcgtgaacctgcagctccacgctcttggcatcctgcagatcctccgtagt 796 Query: 590 gcagtagttgccgtcggcaataaagtagtccaacggacagtccactccaatgcgatcgtc 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 795 gcagtagttgccgtcggcaataaagtagtccaacggacagtccactccaatgcgatcgtc 736 Query: 650 cttttgtccaaccttaaagtcgtgcctgccagtgggcagctgct 693 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 735 cttttgtccaaccttaaagtcgtgcctgccagtgggcagctgct 692 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,887 Number of Sequences: 18737 Number of extensions: 18887 Number of successful extensions: 454 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 452 Number of HSP's gapped (non-prelim): 2 length of query: 693 length of database: 41,270,998 effective HSP length: 17 effective length of query: 676 effective length of database: 40,952,469 effective search space: 27683869044 effective search space used: 27683869044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF489449 BF489449|BF489449 AT25392.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT25392 5, mRNA sequence. (723 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,972 Number of Sequences: 18737 Number of extensions: 14972 Number of successful extensions: 311 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 311 Number of HSP's gapped (non-prelim): 0 length of query: 723 length of database: 41,270,998 effective HSP length: 17 effective length of query: 706 effective length of database: 40,952,469 effective search space: 28912443114 effective search space used: 28912443114 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF491461 BF491461|BF491461 AT28206.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT28206 5, mRNA sequence. (636 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,652 Number of Sequences: 18737 Number of extensions: 15652 Number of successful extensions: 367 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 367 Number of HSP's gapped (non-prelim): 0 length of query: 636 length of database: 41,270,998 effective HSP length: 17 effective length of query: 619 effective length of database: 40,952,469 effective search space: 25349578311 effective search space used: 25349578311 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF491630 BF491630|BF491630 AT28425.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT28425 5 similar to CG7046: FBan0007046 GO:[nucleus (GO:0005634); DNA binding (GO:0003677)] located on: 3R 94B4-94B4;: 08/12/2002, mRNA sequence. (619 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7046-RA feature: mRNA loc=3R:18309537..18310126;ID=FBan0007046... 521 e-147 CG7045-RA feature: mRNA loc=3R:18308207..18308764;ID=FBan0007045... 387 e-107 >CG7046-RA feature: mRNA loc=3R:18309537..18310126;ID=FBan0007046;gene_id=FBgn003 8979;gene_sym=CG7046;sym=CG7046;scaffold=AE003739;len=59 0 Length = 590 Score = 521 bits (263), Expect = e-147 Identities = 263/263 (100%) Strand = Plus / Plus Query: 97 cgataaagatgtcagactacggagcacgccccaaaaaacccatgagcgccttcatgttgt 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 cgataaagatgtcagactacggagcacgccccaaaaaacccatgagcgccttcatgttgt 156 Query: 157 ggatgaattccaccgggcgcaagaacataagagcggagcatcccgattttagtgtccaag 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 ggatgaattccaccgggcgcaagaacataagagcggagcatcccgattttagtgtccaag 216 Query: 217 aagtgtctgtgaagggcggtgagatgtggcgagccatggccgatgagcacaagatcgtgt 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 aagtgtctgtgaagggcggtgagatgtggcgagccatggccgatgagcacaagatcgtgt 276 Query: 277 ggcaggagtcggccagcaaggcaatggccgagtacaaggagaagttggagaagtggaatg 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 ggcaggagtcggccagcaaggcaatggccgagtacaaggagaagttggagaagtggaatg 336 Query: 337 ccttcaaggagcaccagacggag 359 ||||||||||||||||||||||| Sbjct: 337 ccttcaaggagcaccagacggag 359 Score = 418 bits (211), Expect = e-116 Identities = 227/231 (98%), Gaps = 1/231 (0%) Strand = Plus / Plus Query: 373 agtcgtttccccatatctatgaagctccgttgtcctctcgattctcaaaaactaaccaaa 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 agtcgtttccccatatctatgaagctccgttgtcctctcgattctcaaaaactaaccaaa 417 Query: 433 ggccaaccctttttgtgtacgacagcaaggatgaagcaatggctccgatctgcaggacgt 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 ggccaaccctttttgtgtacgacagcaaggatgaagcaatggctccgatctgcaggacgt 477 Query: 493 gcttctcaaaggccaagtgctttcactaaacgtttgctaaattattgtttagtcac-atc 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 478 gcttctcaaaggccaagtgctttcactaaacgtttgctaaattattgtttagtcacaaac 537 Query: 552 caccagcaaaagttgcgagatgttgttcaataaatttaaatatttacattc 602 ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 538 aaccagcaaaagttgcgagatgttgttcaataaatttaaatatttatattc 588 >CG7045-RA feature: mRNA loc=3R:18308207..18308764;ID=FBan0007045;gene_id=FBgn003 8978;gene_sym=CG7045;sym=CG7045;scaffold=AE003739;len=55 8 Length = 558 Score = 387 bits (195), Expect = e-107 Identities = 228/239 (95%) Strand = Plus / Plus Query: 97 cgataaagatgtcagactacggagcacgccccaaaaaacccatgagcgccttcatgttgt 156 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 91 cgataaagatgtcagactgcggagcgcgccccaaaaaacccatgagcgccttcatgttgt 150 Query: 157 ggatgaattccaccgggcgcaagaacataagagcggagcatcccgattttagtgtccaag 216 ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| Sbjct: 151 ggatgaattccaccgggcggaagcacataaaagcggagcatcccgattttagtgtccaag 210 Query: 217 aagtgtctgtgaagggcggtgagatgtggcgagccatggccgatgagcacaagatcgtgt 276 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct: 211 aagtgtctgtgaagggcggagagatgtggcgagccatggccgatgaggacaagatcgtgt 270 Query: 277 ggcaggagtcggccagcaaggcaatggccgagtacaaggagaagttggagaagtggaat 335 ||||||||||||||| || |||||||||||||||||||||||||||| || |||||||| Sbjct: 271 ggcaggagtcggccaccacggcaatggccgagtacaaggagaagttgaagcagtggaat 329 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,287 Number of Sequences: 18737 Number of extensions: 14287 Number of successful extensions: 351 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 344 Number of HSP's gapped (non-prelim): 6 length of query: 619 length of database: 41,270,998 effective HSP length: 17 effective length of query: 602 effective length of database: 40,952,469 effective search space: 24653386338 effective search space used: 24653386338 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF491935 BF491935|BF491935 AT28783.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT28783 5, mRNA sequence. (576 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,366 Number of Sequences: 18737 Number of extensions: 14366 Number of successful extensions: 270 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 270 Number of HSP's gapped (non-prelim): 0 length of query: 576 length of database: 41,270,998 effective HSP length: 17 effective length of query: 559 effective length of database: 40,952,469 effective search space: 22892430171 effective search space used: 22892430171 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF491954 BF491954|BF491954 AT28810.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT28810 5, mRNA sequence. (526 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15354-RA feature: mRNA loc=2L:complement(2001911..2002751,2003... 424 e-118 >CG15354-RA feature: mRNA loc=2L:complement(2001911..2002751,2003045..2003176, 2003838..2003978, 2004334..2004625);ID=FBan0015354;gene_id=FBgn0031383;gene _sym=CG15354;sym=CG15354;scaffold=AE003584;len=1406 Length = 1406 Score = 424 bits (214), Expect = e-118 Identities = 223/226 (98%) Strand = Plus / Minus Query: 301 ctgcttagcagatcccctgacagtacgcaggataagttcatattccccttgatgtgaatc 360 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1235 ctgcttagcagatcccctgacagtacgcaggataagtttatattccccttgatgtgaatc 1176 Query: 361 cccttttggctcgaagtgctcagtcgggtaatatgttcattatgaaatttgcatcaataa 420 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1175 cccttttggctcgaaatgctcagtcgggtaatatgttcattatgaaatttgcatcaataa 1116 Query: 421 tttgcatttcccagctacttgaccctgacatccggaaggaattctcatcgctgtgctgag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 tttgcatttcccagctacttgaccctgacatccggaaggaattctcatcgctgtgctgag 1056 Query: 481 gggataaggataacttcaatcggaactttgctcggagctggaaatc 526 ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1055 gggataaggataacttcaatcgggactttgctcggagctggaaatc 1010 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,356 Number of Sequences: 18737 Number of extensions: 11356 Number of successful extensions: 221 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 219 Number of HSP's gapped (non-prelim): 2 length of query: 526 length of database: 41,270,998 effective HSP length: 17 effective length of query: 509 effective length of database: 40,952,469 effective search space: 20844806721 effective search space used: 20844806721 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF491970 BF491970|BF491970 AT28829.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT28829 5, mRNA sequence. (347 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7983 Number of Sequences: 18737 Number of extensions: 7983 Number of successful extensions: 718 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 718 Number of HSP's gapped (non-prelim): 0 length of query: 347 length of database: 41,270,998 effective HSP length: 16 effective length of query: 331 effective length of database: 40,971,206 effective search space: 13561469186 effective search space used: 13561469186 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF494106 BF494106|BF494106 AT02529.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT02529 5 similar to CG8184: FBan0008184 GO:[] located on: X 13E14-13E14;: 08/12/2002, mRNA sequence. (681 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8184-RB feature: mRNA loc=X:join(15445129..15445395,15445731..... 1350 0.0 >CG8184-RB feature: mRNA loc=X:join(15445129..15445395,15445731..15445970, 15446040..15446261,15446320..15446591,15446672..15447168, 15447306..15452413,15452578..15455392,15455456..15455929, 15455988..15456328,15456391..15457461,15457552..15457687, 15457747..15460371,15460444..15460845,15460913..15461101, 15461166..15461487,15461551..15461716,15461791..15461981, 15462059..15462502);ID=FBan0008184;gene_id=FBgn0030674;gen e_sym=CG8184;sym=CG8184;scaffold=AE003500;len=15782 Length = 15782 Score = 1350 bits (681), Expect = 0.0 Identities = 681/681 (100%) Strand = Plus / Minus Query: 1 ctgtctgttcgcaccacatccggagcggtgacatttagctgctccagtgccgcattagac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10508 ctgtctgttcgcaccacatccggagcggtgacatttagctgctccagtgccgcattagac 10449 Query: 61 attggcgtcggcatggatacaagcgtcggagctggcgttctgtttgcactgggtcggggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10448 attggcgtcggcatggatacaagcgtcggagctggcgttctgtttgcactgggtcggggg 10389 Query: 121 aaaatggagccggccgggtggtcatgacgctgcagacaggcgggtaagtcgcgattgggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10388 aaaatggagccggccgggtggtcatgacgctgcagacaggcgggtaagtcgcgattgggc 10329 Query: 181 cgggcgttaattagcgccgagcctgaagtgcgcgaggaattagtgtgtccgctggatcct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10328 cgggcgttaattagcgccgagcctgaagtgcgcgaggaattagtgtgtccgctggatcct 10269 Query: 241 tgcaggcggttgcgtatctggcgatcagtcaactgcaagaggagcagctctgtctcatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10268 tgcaggcggttgcgtatctggcgatcagtcaactgcaagaggagcagctctgtctcatca 10209 Query: 301 agacgcgtgtggggtcgcgatggtcttccgctggacggtagaagtggcaccggtggatgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10208 agacgcgtgtggggtcgcgatggtcttccgctggacggtagaagtggcaccggtggatgg 10149 Query: 361 cgctgatgctgtggcaccgccacctgtgccgccgtagaggaggagttatgctgtgactgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10148 cgctgatgctgtggcaccgccacctgtgccgccgtagaggaggagttatgctgtgactgt 10089 Query: 421 gattcagctccatccgctgctgtccctgttgtcgtgctagtggacctgtcaccttcgcta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10088 gattcagctccatccgctgctgtccctgttgtcgtgctagtggacctgtcaccttcgcta 10029 Query: 481 tcctgttcgttagttaaatcaatctcggcgtaaatgttgaagggcagttgactttgctga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10028 tcctgttcgttagttaaatcaatctcggcgtaaatgttgaagggcagttgactttgctga 9969 Query: 541 cgtaatccaccgcgttggcgtggcggtcgggttgtcgtttgcgtctccgaggagacgttg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9968 cgtaatccaccgcgttggcgtggcggtcgggttgtcgtttgcgtctccgaggagacgttg 9909 Query: 601 ctgtcaacggacgagaaattcctagttggtccaccagttgttgtcgtggcatcgctggtg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9908 ctgtcaacggacgagaaattcctagttggtccaccagttgttgtcgtggcatcgctggtg 9849 Query: 661 gcaccatttcccgtagcactt 681 ||||||||||||||||||||| Sbjct: 9848 gcaccatttcccgtagcactt 9828 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,474 Number of Sequences: 18737 Number of extensions: 15474 Number of successful extensions: 312 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 311 Number of HSP's gapped (non-prelim): 1 length of query: 681 length of database: 41,270,998 effective HSP length: 17 effective length of query: 664 effective length of database: 40,952,469 effective search space: 27192439416 effective search space used: 27192439416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF494392 BF494392|BF494392 AT02866.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT02866 5 similar to Ranbp11: FBan0008212 GO:[] located on: 2R 52C2-52C2;: 08/12/2002, mRNA sequence. (690 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,901 Number of Sequences: 18737 Number of extensions: 16901 Number of successful extensions: 408 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 408 Number of HSP's gapped (non-prelim): 0 length of query: 690 length of database: 41,270,998 effective HSP length: 17 effective length of query: 673 effective length of database: 40,952,469 effective search space: 27561011637 effective search space used: 27561011637 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF494661 BF494661|BF494661 AT03385.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT03385 5 similar to Ank2: FBan0007462 GO:[cytoskeletal anchoring (GO:0007016); cytoskeletal structural protein (GO:0005200); cytoskeletal anchoring (GO:0007016); plasma membrane (GO:0005886); ] located on: 3L 66A9-66A9;: 08/12/2002, mRNA sequence. (585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Ank2-RC feature: mRNA loc=3L:complement(7664342..7665443,7665502... 620 e-177 Ank2-RB feature: mRNA loc=3L:complement(7658880..7659853,7659918... 620 e-177 >Ank2-RC feature: mRNA loc=3L:complement(7664342..7665443,7665502..7665908, 7665990..7666272,7667418..7668345,7668676..7668879, 7669048..7669812,7669878..7670330,7670397..7670498, 7672667..7673179);ID=FBan0007462;gene_id=FBgn0017645;gene _sym=Ank2;sym=CG7462;scaffold=AE003558;len=4757 Length = 4757 Score = 620 bits (313), Expect = e-177 Identities = 313/313 (100%) Strand = Plus / Minus Query: 150 gcaatgtgcagtggagtgaatccattcaaagcccttgcattggcatcagcattccgatct 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 gcaatgtgcagtggagtgaatccattcaaagcccttgcattggcatcagcattccgatct 1560 Query: 210 agtaaaagcttagccaccctaacatgaccacagtgagcagccacatgaagagcagtgaga 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1559 agtaaaagcttagccaccctaacatgaccacagtgagcagccacatgaagagcagtgaga 1500 Query: 270 taatccactgtcacctcgtcgacgggagcacgatggtacaagaggatgcgggcggcatca 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1499 taatccactgtcacctcgtcgacgggagcacgatggtacaagaggatgcgggcggcatca 1440 Query: 330 acatgctcaccctgggcggccatatggaggggtgccaaaccatttttggtcttggcagag 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1439 acatgctcaccctgggcggccatatggaggggtgccaaaccatttttggtcttggcagag 1380 Query: 390 atgggagctcctcgttcgagtagcatgtcaacaacttgctcatgacccgagcgagcggcg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1379 atgggagctcctcgttcgagtagcatgtcaacaacttgctcatgacccgagcgagcggcg 1320 Query: 450 caatggagcggag 462 ||||||||||||| Sbjct: 1319 caatggagcggag 1307 >Ank2-RB feature: mRNA loc=3L:complement(7658880..7659853,7659918..7660077, 7663375..7663579,7665232..7665443,7665502..7665908, 7665990..7666272,7667418..7668345,7668676..7668879, 7669048..7669812,7669878..7670330,7670397..7670498, 7672667..7673179);ID=FBan0007462;gene_id=FBgn0017645;gene _sym=Ank2;sym=CG7462;scaffold=AE003558;len=5206 Length = 5206 Score = 620 bits (313), Expect = e-177 Identities = 313/313 (100%) Strand = Plus / Minus Query: 150 gcaatgtgcagtggagtgaatccattcaaagcccttgcattggcatcagcattccgatct 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 gcaatgtgcagtggagtgaatccattcaaagcccttgcattggcatcagcattccgatct 1560 Query: 210 agtaaaagcttagccaccctaacatgaccacagtgagcagccacatgaagagcagtgaga 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1559 agtaaaagcttagccaccctaacatgaccacagtgagcagccacatgaagagcagtgaga 1500 Query: 270 taatccactgtcacctcgtcgacgggagcacgatggtacaagaggatgcgggcggcatca 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1499 taatccactgtcacctcgtcgacgggagcacgatggtacaagaggatgcgggcggcatca 1440 Query: 330 acatgctcaccctgggcggccatatggaggggtgccaaaccatttttggtcttggcagag 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1439 acatgctcaccctgggcggccatatggaggggtgccaaaccatttttggtcttggcagag 1380 Query: 390 atgggagctcctcgttcgagtagcatgtcaacaacttgctcatgacccgagcgagcggcg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1379 atgggagctcctcgttcgagtagcatgtcaacaacttgctcatgacccgagcgagcggcg 1320 Query: 450 caatggagcggag 462 ||||||||||||| Sbjct: 1319 caatggagcggag 1307 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,721 Number of Sequences: 18737 Number of extensions: 13721 Number of successful extensions: 287 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 277 Number of HSP's gapped (non-prelim): 10 length of query: 585 length of database: 41,270,998 effective HSP length: 17 effective length of query: 568 effective length of database: 40,952,469 effective search space: 23261002392 effective search space used: 23261002392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF494878 BF494878|BF494878 AT03646.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT03646 5 similar to CycT: FBan0006292 GO:[positive transcription elongation factor (GO:0008159); transcription elongation factor complex b (GO:0008024); transcription elongation factor complex b (GO:0008024); cyclin (GO:0003751 [Description Truncated]: 08/12/2002, mRNA sequence. (557 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CycT-RB feature: mRNA loc=3L:complement(17501379..17503757,17503... 1080 0.0 CycT-RA feature: mRNA loc=3L:complement(17501379..17503757,17503... 1080 0.0 >CycT-RB feature: mRNA loc=3L:complement(17501379..17503757,17503814..17504409, 17505253..17505298, 17505375..17506659);ID=FBan0006292;gene_id=FBgn0025455;ge ne_sym=CycT;sym=CG6292;scaffold=AE003523;len=4306 Length = 4306 Score = 1080 bits (545), Expect = 0.0 Identities = 554/557 (99%) Strand = Plus / Minus Query: 1 ccattgctagcgcctggatatccaccacgcgacatcagcgggttttgaggggcactatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2357 ccattgctagcgcctggatatccaccacgcgacatcagcgggttttgaggggcactatta 2298 Query: 61 ctgtatggcggcggtgcgttcggatacattttgttgctctgggatttatccttggaggac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2297 ctgtatggcggcggtgcgttcggatacattttgttgctctgggatttatccttggaggac 2238 Query: 121 atgcccgatgcagaggaattagaggcggatggatgtgggaccggctgctgctgcggctgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2237 atgcccgatgcagaggaattagaggcggatggatgtgggaccggctgctgctgcggctgc 2178 Query: 181 tgaggcttggagcccgaagtcatcttgtggctgccgtgaggtggcatgcccacgcctacc 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2177 tggggcttggagcccgaagtcatcttgtggctgccgtgaggtggcatgcccacgcctacc 2118 Query: 241 ggcggcatgccgcgagaggatttgtgatagtccacgggcatagacggtcggccaggctgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2117 ggcggcatgccgcgagaggatttgtgatagtccacgggcatagacggtcggccaggctgc 2058 Query: 301 tggcttgaagacgacgaggatgagctgctgcgctggctgccacttcccgaggaaccgagt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2057 tggcttgaagacgacgaggatgagctgctgcgctggctgccacttcccgaggaaccgagt 1998 Query: 361 ccactgctactactacgctggtgacttgagggcattcgattgttatagcccggctgcttt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1997 ccactgctactactacgctggtgacttgagggcattcgattgttatagcccggctgcttt 1938 Query: 421 gacttgtgatccggatgagcttcgggcggcatgccaccagggtaatttggcatcttgtga 480 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1937 gacttgtgatccgtatgagcgtcgggcggcatgccaccagggtaatttggcatcttgtga 1878 Query: 481 ctggaggaagacgacgaagagctgctgcctggcactccgctcactgaggacgagcgctga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1877 ctggaggaagacgacgaagagctgctgcctggcactccgctcactgaggacgagcgctga 1818 Query: 541 tggccaccatcctgtcg 557 ||||||||||||||||| Sbjct: 1817 tggccaccatcctgtcg 1801 >CycT-RA feature: mRNA loc=3L:complement(17501379..17503757, 17503814..17504710);ID=FBan0006292;gene_id=FBgn0025455;ge ne_sym=CycT;sym=CG6292;scaffold=AE003523;len=3276 Length = 3276 Score = 1080 bits (545), Expect = 0.0 Identities = 554/557 (99%) Strand = Plus / Minus Query: 1 ccattgctagcgcctggatatccaccacgcgacatcagcgggttttgaggggcactatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1327 ccattgctagcgcctggatatccaccacgcgacatcagcgggttttgaggggcactatta 1268 Query: 61 ctgtatggcggcggtgcgttcggatacattttgttgctctgggatttatccttggaggac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1267 ctgtatggcggcggtgcgttcggatacattttgttgctctgggatttatccttggaggac 1208 Query: 121 atgcccgatgcagaggaattagaggcggatggatgtgggaccggctgctgctgcggctgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1207 atgcccgatgcagaggaattagaggcggatggatgtgggaccggctgctgctgcggctgc 1148 Query: 181 tgaggcttggagcccgaagtcatcttgtggctgccgtgaggtggcatgcccacgcctacc 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1147 tggggcttggagcccgaagtcatcttgtggctgccgtgaggtggcatgcccacgcctacc 1088 Query: 241 ggcggcatgccgcgagaggatttgtgatagtccacgggcatagacggtcggccaggctgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1087 ggcggcatgccgcgagaggatttgtgatagtccacgggcatagacggtcggccaggctgc 1028 Query: 301 tggcttgaagacgacgaggatgagctgctgcgctggctgccacttcccgaggaaccgagt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1027 tggcttgaagacgacgaggatgagctgctgcgctggctgccacttcccgaggaaccgagt 968 Query: 361 ccactgctactactacgctggtgacttgagggcattcgattgttatagcccggctgcttt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 967 ccactgctactactacgctggtgacttgagggcattcgattgttatagcccggctgcttt 908 Query: 421 gacttgtgatccggatgagcttcgggcggcatgccaccagggtaatttggcatcttgtga 480 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 907 gacttgtgatccgtatgagcgtcgggcggcatgccaccagggtaatttggcatcttgtga 848 Query: 481 ctggaggaagacgacgaagagctgctgcctggcactccgctcactgaggacgagcgctga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 847 ctggaggaagacgacgaagagctgctgcctggcactccgctcactgaggacgagcgctga 788 Query: 541 tggccaccatcctgtcg 557 ||||||||||||||||| Sbjct: 787 tggccaccatcctgtcg 771 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,929 Number of Sequences: 18737 Number of extensions: 27929 Number of successful extensions: 2797 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2795 Number of HSP's gapped (non-prelim): 2 length of query: 557 length of database: 41,270,998 effective HSP length: 17 effective length of query: 540 effective length of database: 40,952,469 effective search space: 22114333260 effective search space used: 22114333260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF494991 BF494991|BF494991 AT03788.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT03788 5 similar to CG9485: FBan0009485 GO:[enzyme (GO:0003824)] located on: 2R 57D4-57D5;: 08/12/2002, mRNA sequence. (701 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 585 e-166 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 585 e-166 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 585 e-166 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 585 bits (295), Expect = e-166 Identities = 311/315 (98%), Gaps = 1/315 (0%) Strand = Plus / Minus Query: 388 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4878 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 4819 Query: 448 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4818 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4759 Query: 508 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4758 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4699 Query: 568 gctcccaaggagtgcagatcgtacaggacttccaaatgggcagc-acactccaggcctgc 626 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 4698 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4639 Query: 627 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggccatccgcgc 686 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 4638 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 4579 Query: 687 caatgggatgtctgt 701 ||||||||||||||| Sbjct: 4578 caatgggatgtctgt 4564 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 585 bits (295), Expect = e-166 Identities = 311/315 (98%), Gaps = 1/315 (0%) Strand = Plus / Minus Query: 388 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5092 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 5033 Query: 448 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5032 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4973 Query: 508 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4972 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4913 Query: 568 gctcccaaggagtgcagatcgtacaggacttccaaatgggcagc-acactccaggcctgc 626 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 4912 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4853 Query: 627 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggccatccgcgc 686 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 4852 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 4793 Query: 687 caatgggatgtctgt 701 ||||||||||||||| Sbjct: 4792 caatgggatgtctgt 4778 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 585 bits (295), Expect = e-166 Identities = 311/315 (98%), Gaps = 1/315 (0%) Strand = Plus / Minus Query: 388 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4900 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 4841 Query: 448 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4840 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4781 Query: 508 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4780 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4721 Query: 568 gctcccaaggagtgcagatcgtacaggacttccaaatgggcagc-acactccaggcctgc 626 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 4720 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4661 Query: 627 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggccatccgcgc 686 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 4660 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 4601 Query: 687 caatgggatgtctgt 701 ||||||||||||||| Sbjct: 4600 caatgggatgtctgt 4586 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,878 Number of Sequences: 18737 Number of extensions: 12878 Number of successful extensions: 255 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 249 Number of HSP's gapped (non-prelim): 3 length of query: 701 length of database: 41,270,998 effective HSP length: 17 effective length of query: 684 effective length of database: 40,952,469 effective search space: 28011488796 effective search space used: 28011488796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF496365 BF496365|BF496365 AT10144.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT10144 5 similar to CG8220: FBan0008220 GO:[] located on: 3L 79F5-79F5;: 08/12/2002, mRNA sequence. (649 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32462-RA feature: mRNA loc=3L:complement(22769672..22770790);I... 769 0.0 >CG32462-RA feature: mRNA loc=3L:complement(22769672..22770790);ID=FBan0032462;gene _id=FBgn0052462;gene_sym=CG32462;sym=CG32462;scaffold=AE0 03599;len=1119 Length = 1119 Score = 769 bits (388), Expect = 0.0 Identities = 388/388 (100%) Strand = Plus / Minus Query: 262 attcgcaactgcattttcgggcatcaccgggcaatcgggccacgtccacgttataaagcc 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1102 attcgcaactgcattttcgggcatcaccgggcaatcgggccacgtccacgttataaagcc 1043 Query: 322 ggaactcgacatttcggcgccgcacattgagcgtgaccaccacgcagtagagtagcatct 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1042 ggaactcgacatttcggcgccgcacattgagcgtgaccaccacgcagtagagtagcatct 983 Query: 382 gcaaatgcttggccagcatcacgtagaaggcgcccatgtcgtccgggaatagggcttcgg 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 982 gcaaatgcttggccagcatcacgtagaaggcgcccatgtcgtccgggaatagggcttcgg 923 Query: 442 cccacgcggaacagtcgaacaggaagtagccaccatcgcggctggagctgtgcccgaagg 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 922 cccacgcggaacagtcgaacaggaagtagccaccatcgcggctggagctgtgcccgaagg 863 Query: 502 agaagcgacgctcctggcactccagcaggccaaactgaaagcgcgtgaagaagtagttga 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 862 agaagcgacgctcctggcactccagcaggccaaactgaaagcgcgtgaagaagtagttga 803 Query: 562 ggccctctagcgaactcatttctctactggctggggagcccgaaggccaccagctcaagt 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 802 ggccctctagcgaactcatttctctactggctggggagcccgaaggccaccagctcaagt 743 Query: 622 tgcacctggcatcgtccacacccgaatg 649 |||||||||||||||||||||||||||| Sbjct: 742 tgcacctggcatcgtccacacccgaatg 715 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,134 Number of Sequences: 18737 Number of extensions: 15134 Number of successful extensions: 319 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 318 Number of HSP's gapped (non-prelim): 1 length of query: 649 length of database: 41,270,998 effective HSP length: 17 effective length of query: 632 effective length of database: 40,952,469 effective search space: 25881960408 effective search space used: 25881960408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF497257 BF497257|BF497257 AT11392.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT11392 5, mRNA sequence. (661 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,480 Number of Sequences: 18737 Number of extensions: 11480 Number of successful extensions: 195 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 195 Number of HSP's gapped (non-prelim): 0 length of query: 661 length of database: 41,270,998 effective HSP length: 17 effective length of query: 644 effective length of database: 40,952,469 effective search space: 26373390036 effective search space used: 26373390036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF497643 BF497643|BF497643 AT11857.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT11857 5, mRNA sequence. (572 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,109 Number of Sequences: 18737 Number of extensions: 11109 Number of successful extensions: 208 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 208 Number of HSP's gapped (non-prelim): 0 length of query: 572 length of database: 41,270,998 effective HSP length: 17 effective length of query: 555 effective length of database: 40,952,469 effective search space: 22728620295 effective search space used: 22728620295 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF498278 BF498278|BF498278 AT12662.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT12662 5 similar to CG11768: FBan0011768 located on: 3R 85B1-85B2;: 04/09/2001, mRNA sequence. (654 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11768-RA feature: mRNA loc=3R:complement(4579846..4580147,4580... 593 e-169 >CG11768-RA feature: mRNA loc=3R:complement(4579846..4580147, 4580224..4581406);ID=FBan0011768;gene_id=FBgn0037625;gene _sym=CG11768;sym=CG11768;scaffold=AE003680;len=1485 Length = 1485 Score = 593 bits (299), Expect = e-169 Identities = 302/303 (99%) Strand = Plus / Minus Query: 46 ttagtagagcggatgtggatctgggactgggattaacaaaccggctgcccctgaatacgt 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1485 ttagtagagcggatgtggatctgggactgggattaacaaaccggctgcccctgaatacgt 1426 Query: 106 actcagatgcggctgcagagtgacctgtgactcactgtgctgccagtcgttgcgctgctc 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1425 actcagatgcggctgcagagtgacctgtgactcactgtgctgccagtcgttgcgctgctc 1366 Query: 166 ctcgcctcgtgcgttttccattgagccagccaggtagtttacacacggaggagcaccgcg 225 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1365 ctcgcctcgtgcgttttccattgagccggccaggtagtttacacacggaggagcaccgcg 1306 Query: 226 tgggaacttggggttgcgccgcagttcctgcagctgctgaatgggcagatcaatgcacag 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1305 tgggaacttggggttgcgccgcagttcctgcagctgctgaatgggcagatcaatgcacag 1246 Query: 286 tgtccagatgccgccgtgcatgggcaccaggaaaacagagtcgcgccgaaagcgatgatc 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 tgtccagatgccgccgtgcatgggcaccaggaaaacagagtcgcgccgaaagcgatgatc 1186 Query: 346 ggc 348 ||| Sbjct: 1185 ggc 1183 Score = 444 bits (224), Expect = e-124 Identities = 230/232 (99%) Strand = Plus / Minus Query: 423 ccctcttgtccggcttgagcatagccacctggtcgtcgagaaaccactccagatgcagtc 482 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1183 ccctcttgtccggcttgagcatagccacctggtcgtcgagaagccactccagatgcagtc 1124 Query: 483 ccgatcgattggagtagcgatcaaggctgttgcggtcccatgtaacgtgctcccagtgat 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 ccgatcgattggagtagcgatcaaggctgttgcggtcccatgtaacgtgctcccagtgat 1064 Query: 543 cagtcatgatggcagcgcacagcatggctgtggcgcttgtggtcatcagcagagtgacga 602 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1063 cagtcatgatggcagcgcacagcatggctgtggcgcttgtagtcatcagcagagtgacga 1004 Query: 603 acaggaagagcaccggcggcgggcccatgcagcagctggagcaacaggtgct 654 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1003 acaggaagagcaccggcggcgggcccatgcagcagctggagcaacaggtgct 952 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,320 Number of Sequences: 18737 Number of extensions: 19320 Number of successful extensions: 644 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 642 Number of HSP's gapped (non-prelim): 2 length of query: 654 length of database: 41,270,998 effective HSP length: 17 effective length of query: 637 effective length of database: 40,952,469 effective search space: 26086722753 effective search space used: 26086722753 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF498894 BF498894|BF498894 AT13310.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT13310 5, mRNA sequence. (607 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,861 Number of Sequences: 18737 Number of extensions: 13861 Number of successful extensions: 298 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 298 Number of HSP's gapped (non-prelim): 0 length of query: 607 length of database: 41,270,998 effective HSP length: 17 effective length of query: 590 effective length of database: 40,952,469 effective search space: 24161956710 effective search space used: 24161956710 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF499591 BF499591|BF499591 AT14183.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT14183 5 similar to CG12717: FBan0012717 GO:[] located on: X 11B19-11B19;: 08/12/2002, mRNA sequence. (763 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG12717-RA feature: mRNA loc=X:complement(12491958..12494265);ID... 769 0.0 >CG12717-RA feature: mRNA loc=X:complement(12491958..12494265);ID=FBan0012717;gene_ id=FBgn0030420;gene_sym=CG12717;sym=CG12717;scaffold=AE00 3490;len=2308 Length = 2308 Score = 769 bits (388), Expect = 0.0 Identities = 615/692 (88%), Gaps = 23/692 (3%) Strand = Plus / Plus Query: 86 tgaagagctctctccaacggttgtcaaaccatcaaagactttggtggccaacaatggtcg 145 |||||||| ||| || ||||||||||||||||| ||||| |||||||||||||||| | Sbjct: 682 tgaagagcactcccctgcggttgtcaaaccatcagagactgcggtggccaacaatggttg 741 Query: 146 ccagccagctgcaagtgcaaccaaaggcaagaagcacaagaaaagtccttgctc---tcc 202 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 742 ccagccagctgcaagtgcaaccaaaggcaagaagcacaagaaaagtccttgcgggagtcc 801 Query: 203 gggagacaccaatgctggccaagtgatatcgtcggcggatgcagacgcctatactaatac 262 |||||| | ||||| |||||||||||||| |||||||||| ||||||| |||||||||| Sbjct: 802 gggagaaaacaatgatggccaagtgatattgtcggcggatcaagacgccaatactaatac 861 Query: 263 caaggccaagaaacagaagaagtgccattctggaaaggataacaatggctatcaagctgc 322 |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| Sbjct: 862 caaggccaagaaacagaagaagtgccatattgcaaaggataacaatggaattcaagctgc 921 Query: 323 tcgttctcaagacaaccaaggttcatctggcaataaacaggaaagtcacaactctacggc 382 | ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| Sbjct: 922 tagttctcatgacaaccctagttcatctggcaataaacagggaagtcacaactccacggc 981 Query: 383 tataacctccaattcttcaaagacgagtaatggtcttcagggcatgcaaccagct----- 437 |||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||| Sbjct: 982 tataacctccaattctacaatgacgagtaatggtcttcggggcgtgcaaccagctgaaga 1041 Query: 438 ----cccgcaatctcccagtggatccagtcgaggaaccatgccgcacatgcctctgttag 493 ||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 1042 tgctcccgcaatctcccagtggatccagtcgaggaacaatgccg---------ctgttag 1092 Query: 494 caataaatcggaaaagacagctggtggatctcaatcgcgggtgcaatcgaatgttgcatc 553 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 caagaaatcggaagagacagctggtggatctcaatcgcgggtgcaatcgaatgttgcatc 1152 Query: 554 catatcctcgccagcgatgaaagcaactagtaacgcagctatacccacaccagcagaacg 613 |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 1153 catatcctcgccagcggtgaaagcaactagcgacgctgctatacccacaccagcagaacg 1212 Query: 614 cgcagagcggagtcacctgcgccggaatcgcaagtggatactaagcagggacgttaatga 673 ||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||| |||| Sbjct: 1213 cgcagagcgtagtcgcctgcgccgaaatcgcaattggatactaagcagggacgttgatga 1272 Query: 674 agatgccgtggcgctggtgagcagcggcgatgaggagaccaccgctgccgacgatggcca 733 ||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 1273 agatgccgtggtgctggtgagcagcggtgatgaggagaccaccgccgccgatgatggcca 1332 Query: 734 nac--agagaggactctcacccgacgagaatc 763 || ||||| |||| |||||||| ||||||| Sbjct: 1333 aaccgagagaagactttcacccgatgagaatc 1364 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,524 Number of Sequences: 18737 Number of extensions: 19524 Number of successful extensions: 417 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 411 Number of HSP's gapped (non-prelim): 6 length of query: 763 length of database: 41,270,998 effective HSP length: 17 effective length of query: 746 effective length of database: 40,952,469 effective search space: 30550541874 effective search space used: 30550541874 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF499653 BF499653|BF499653 AT14266.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT14266 5 similar to CG13980: FBan0013980 GO:[] located on: 3R 97F10-97F10;: 08/12/2002, mRNA sequence. (697 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13980-RA feature: mRNA loc=3R:join(23184232..23184504,23184566... 535 e-151 >CG13980-RA feature: mRNA loc=3R:join(23184232..23184504,23184566..23184686, 23185724..23186067);ID=FBan0013980;gene_id=FBgn0039514;g ene_sym=CG13980;sym=CG13980;scaffold=AE003760;len=738 Length = 738 Score = 535 bits (270), Expect = e-151 Identities = 273/274 (99%) Strand = Plus / Minus Query: 342 cctcctcgtacacctcgttgatgttctggaagttgttggtgccgggacgctggagtcctt 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 cctcctcgtacacctcgttgatgttctggaagttgttggtgccgggacgctggagtcctt 215 Query: 402 taagcgtctcgtagaggaagagctcgaagttcttaaacgtgtactcgctgaagttgtagc 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 taagcgtctcgtagaggaagagctcgaagttcttaaacgtgtactcgctgaagttgtagc 155 Query: 462 gcctgagtcgcgtgcccgtttcgccgcccagaaggacacaggacttgtggtagtcgtcca 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 gcctgagtcgcgtgcccgtttcgccgcccagaaggacacaggacttgtggtagtcgtcca 95 Query: 522 ccgcccgcttcaccagcaccgcctcgttcagcttactggagcgaatctgcagcgacttga 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94 ccgcccgcttcaccagcaccgcctcgttcagcttactggagcgaatctgcagcgacttga 35 Query: 582 gccccaggagatgctggaagatcttgcgctccat 615 || ||||||||||||||||||||||||||||||| Sbjct: 34 gctccaggagatgctggaagatcttgcgctccat 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,329 Number of Sequences: 18737 Number of extensions: 17329 Number of successful extensions: 451 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 449 Number of HSP's gapped (non-prelim): 2 length of query: 697 length of database: 41,270,998 effective HSP length: 17 effective length of query: 680 effective length of database: 40,952,469 effective search space: 27847678920 effective search space used: 27847678920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF503395 BF503395|BF503395 AT19369.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT19369 5, mRNA sequence. (768 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,249 Number of Sequences: 18737 Number of extensions: 15249 Number of successful extensions: 281 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 281 Number of HSP's gapped (non-prelim): 0 length of query: 768 length of database: 41,270,998 effective HSP length: 17 effective length of query: 751 effective length of database: 40,952,469 effective search space: 30755304219 effective search space used: 30755304219 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF503588 BF503588|BF503588 AT04666.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT04666 5 similar to l(2)35Aa: FBan0007480 GO:[polypeptide N-acetylgalactosaminyltransferase (GO:0004653); enzyme (GO:0003824)] located on: 2L 35A1-35A1;: 08/12/2002, mRNA sequence. (737 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Pgant35A-RA feature: mRNA loc=2L:14341370..14343595;ID=FBan00074... 1168 0.0 >Pgant35A-RA feature: mRNA loc=2L:14341370..14343595;ID=FBan0007480;gene_id=FBgn0001 970;gene_sym=Pgant35A;sym=CG7480;scaffold=AE003643;len=22 26 Length = 2226 Score = 1168 bits (589), Expect = 0.0 Identities = 595/597 (99%) Strand = Plus / Minus Query: 1 gaattattcgatccgagcgaatcgctcacagcgccttgtccgagttcctcgcctccttgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2086 gaattattcgatccgagcgaatcgctcacagcgccttgtccgagttcctcgcctccttgg 2027 Query: 61 ccctgccctccgcctccgttggcttcttcagctgcacaatgtcccaggagccgcccgctc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2026 ccctgccctccgcctccgttggcttcttcagctgcacaatgtcccaggagccgcccgctc 1967 Query: 121 cgttggacttggagcacagatccagactgatgagggcgcccgtcgtgggagcagctgccc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1966 cgttggacttggagcacagatccagactgatgagggcgcccgtcgtgggagcagctgccc 1907 Query: 181 ggaggcaggtgcctttggccatgttgtagacgggactgttggcgttgcgagtgtgccgcc 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1906 ggaggcaggtgcctttggccatgttgtagacgggactgttggcgttgcgggtgtgccgcc 1847 Query: 241 actgctgatcgccgagcatctcgtggcacttgttgaccgtgacctgcgcatccccggatg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1846 actgctgatcgccgagcatctcgtggcacttgttgaccgtgacctgcgcatccccggatg 1787 Query: 301 cctccaggcacagcaacttgtccagcacaatttccgccttctccgtttcgtaccacagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1786 cctccaggcacagcaacttgtccagcacaatttccgccttctccgtttcgtaccacagtt 1727 Query: 361 gattgggtgtccttcggcaggtttgcaattgcagggagctgcccttcttccagaaaccct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1726 gattgggtgtccttcggcaggtttgcaattgcagggagctgcccttcttccagaaaccct 1667 Query: 421 tcaccttgggagccaccacggcggcacagagctccgttcccgtcagtcgcagctggaatg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1666 tcaccttgggagccaccacggcggcacagagctccgttcccgtcagtcgcagctggaatg 1607 Query: 481 tgtcgacatagttacgttttcgcgagtgccaaggctgaaagatgggcgctgccgccgact 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1606 tgtcgacatagttacgttttcgcgagtgccaaggctgaaagatgggcgctgccgccgact 1547 Query: 541 tcttggactcctcgcccggcacatgcagctctggatagacattctttagataccagg 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1546 tcttggactcctcgcccggcacatgcagctctggatagacattctttagataccagg 1490 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,690 Number of Sequences: 18737 Number of extensions: 21690 Number of successful extensions: 498 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 496 Number of HSP's gapped (non-prelim): 2 length of query: 737 length of database: 41,270,998 effective HSP length: 17 effective length of query: 720 effective length of database: 40,952,469 effective search space: 29485777680 effective search space used: 29485777680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF504156 BF504156|BF504156 AT05466.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT05466 5 similar to CG6468: FBan0006468 GO:[] located on: 3L 77B2-77B2;: 08/12/2002, mRNA sequence. (552 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32226-RA feature: mRNA loc=3L:complement(20215667..20216036,20... 959 0.0 >CG32226-RA feature: mRNA loc=3L:complement(20215667..20216036,20216102..20216683, 20216742..20217441,20217503..20217766,20218036..20219438, 20219495..20220640);ID=FBan0032226;gene_id=FBgn0052226;ge ne_sym=CG32226;sym=CG32226;scaffold=AE003514;len=4465 Length = 4465 Score = 959 bits (484), Expect = 0.0 Identities = 487/488 (99%) Strand = Plus / Minus Query: 65 agtggaaacatccatcttctccacgtatccctcgccgggttcacttgtctgatgtgcctt 124 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2514 agtggaaacatccatcttctccacgtatccctcgctgggttcacttgtctgatgtgcctt 2455 Query: 125 catgttggcgggatcaaacacaaagacatcgcccaactcgctggttatccagatcgcatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2454 catgttggcgggatcaaacacaaagacatcgcccaactcgctggttatccagatcgcatt 2395 Query: 185 gccagccggttttcccaccatagtgttgatctggctacagactgacgacaggtgggacaa 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2394 gccagccggttttcccaccatagtgttgatctggctacagactgacgacaggtgggacaa 2335 Query: 245 ccagtcctccatttccgagtcactggagaactgtagcttaacgggcgaacagtttacggg 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2334 ccagtcctccatttccgagtcactggagaactgtagcttaacgggcgaacagtttacggg 2275 Query: 305 aagatgaggagcatgaatagcgatccgcggtgctccggcttcactgcagcactgaacaca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2274 aagatgaggagcatgaatagcgatccgcggtgctccggcttcactgcagcactgaacaca 2215 Query: 365 ggtgatgtctgacaacgggaactgaatcttcgtggcggctccatccggactaagtaccgt 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2214 ggtgatgtctgacaacgggaactgaatcttcgtggcggctccatccggactaagtaccgt 2155 Query: 425 aaaagttccagagtccccggatcgcgagttttcactactatttgtgtcagtgccactgcc 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2154 aaaagttccagagtccccggatcgcgagttttcactactatttgtgtcagtgccactgcc 2095 Query: 485 actgcttacccactcaagttcgatgatacaatcctcaaactcgcctccaggtcgctgata 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2094 actgcttacccactcaagttcgatgatacaatcctcaaactcgcctccaggtcgctgata 2035 Query: 545 gcgcgcat 552 |||||||| Sbjct: 2034 gcgcgcat 2027 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,929 Number of Sequences: 18737 Number of extensions: 10929 Number of successful extensions: 280 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 279 Number of HSP's gapped (non-prelim): 1 length of query: 552 length of database: 41,270,998 effective HSP length: 17 effective length of query: 535 effective length of database: 40,952,469 effective search space: 21909570915 effective search space used: 21909570915 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF505165 BF505165|BF505165 AT07338.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT07338 5, mRNA sequence. (668 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,892 Number of Sequences: 18737 Number of extensions: 13892 Number of successful extensions: 250 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 250 Number of HSP's gapped (non-prelim): 0 length of query: 668 length of database: 41,270,998 effective HSP length: 17 effective length of query: 651 effective length of database: 40,952,469 effective search space: 26660057319 effective search space used: 26660057319 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF506060 BF506060|BF506060 AT08427.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT08427 5 similar to CG10412: FBan0010412 GO:[guanyl-nucleotide exchange factor (GO:0005085)] located on: 2R 41F6-41F6;: 08/12/2002, mRNA sequence. (754 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,137 Number of Sequences: 18737 Number of extensions: 15137 Number of successful extensions: 307 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 307 Number of HSP's gapped (non-prelim): 0 length of query: 754 length of database: 41,270,998 effective HSP length: 17 effective length of query: 737 effective length of database: 40,952,469 effective search space: 30181969653 effective search space used: 30181969653 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BF506500 BF506500|BF506500 AT08987.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT08987 5, mRNA sequence. (633 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32458-RA feature: mRNA loc=3L:join(22948301..22949479,22950772... 398 e-110 >CG32458-RA feature: mRNA loc=3L:join(22948301..22949479, 22950772..22951719);ID=FBan0032458;gene_id=FBgn0052458;ge ne_sym=CG32458;sym=CG32458;scaffold=AE003599;len=2127 Length = 2127 Score = 398 bits (201), Expect = e-110 Identities = 217/220 (98%), Gaps = 2/220 (0%) Strand = Plus / Minus Query: 415 tcactctgggctggcactgtcgacatgatatattcgcttctgctggatgtatctaaacta 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1157 tcactctgggctggcactgtcgacatgatatattcgcttctgctggatgtatctaaacta 1098 Query: 475 atgcattctgaaggagtagaagccggcctcaagctctggtgacccagctgatgctgctcg 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1097 atgcattctgaaggagtagaagccggcctcaagctctggtgacccagctgatgctgctcg 1038 Query: 535 cattcatttttagtagtctcctcgctgtaccgatttcttggttgaggacggttgcagtgc 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1037 cattcatttttagtagtctcctcgctgtaccgatttcttggttgaggacggttgcagtgc 978 Query: 595 gaaggggcanaactttgcactggtgca-gactgatgcaat 633 ||||||||| ||||||||||| ||||| |||||||||||| Sbjct: 977 gaaggggcaaaactttgcact-gtgcaggactgatgcaat 939 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,624 Number of Sequences: 18737 Number of extensions: 11624 Number of successful extensions: 182 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 181 Number of HSP's gapped (non-prelim): 1 length of query: 633 length of database: 41,270,998 effective HSP length: 17 effective length of query: 616 effective length of database: 40,952,469 effective search space: 25226720904 effective search space used: 25226720904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BG632149 BG632149|BG632149 GH04183.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH04183 3 similar to CG12740: FBan0012740 GO:[protein biosynthesis (GO:0006412); cytosolic large ribosomal (60S)-subunit (GO:0005842)] located on: 3L 63C1-63C1;: 08/12/2002, mRNA sequence. (787 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG12740-RD feature: mRNA loc=3L:complement(3201539..3201912,3202... 1015 0.0 CG12740-RB feature: mRNA loc=3L:complement(3201539..3201912,3202... 1015 0.0 CG12740-RA feature: mRNA loc=3L:complement(3201539..3201912,3202... 1015 0.0 CG12740-RC feature: mRNA loc=3L:complement(3201539..3202338,3202... 680 0.0 CG17180-RA feature: mRNA loc=3L:join(521480..521569,521631..5220... 500 e-141 >CG12740-RD feature: mRNA loc=3L:complement(3201539..3201912,3202096..3202338, 3202511..3202610, 3202782..3202924);ID=FBan0012740;gene_id=FBgn0035422;gen e_sym=CG12740;sym=CG12740;scaffold=AE003477;len=860 Length = 860 Score = 1015 bits (512), Expect = 0.0 Identities = 512/512 (100%) Strand = Plus / Minus Query: 1 acggtgtttttaatattttttctttattctcgagtagaaaacagctccgcatagccccaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 acggtgtttttaatattttttctttattctcgagtagaaaacagctccgcatagccccaa 597 Query: 61 tctggtacagtttattcgggcttctttcccttagcaaactcggccttctttcccttgacg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 596 tctggtacagtttattcgggcttctttcccttagcaaactcggccttctttcccttgacg 537 Query: 121 ggggcgggcttctgggagcgcaggacagcggaagcgcggcggagggcagcctgtgtcagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 ggggcgggcttctgggagcgcaggacagcggaagcgcggcggagggcagcctgtgtcagg 477 Query: 181 tccttgcggtacttggagccgataagcaggttcttcagcttcttcagggaacggcgggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 tccttgcggtacttggagccgataagcaggttcttcagcttcttcagggaacggcgggga 417 Query: 241 ccggccttgaagtcaacacgcacggtgttcttggcggggcgctgggcatacttgcccttc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 ccggccttgaagtcaacacgcacggtgttcttggcggggcgctgggcatacttgcccttc 357 Query: 301 ttcagcacggcggtgaagcccttcttgtcggcagctggcacgactcccagggtcttcttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 ttcagcacggcggtgaagcccttcttgtcggcagctggcacgactcccagggtcttcttg 297 Query: 361 tgcacgatgccgctgtagcggtacgagctcacgctggccaagttgtttggctctgtgctg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 tgcacgatgccgctgtagcggtacgagctcacgctggccaagttgtttggctctgtgctg 237 Query: 421 aagggcttcttcacatcgcgcttcttcaacaagaaggcgttgttgttgcgaatgatcaac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 aagggcttcttcacatcgcgcttcttcaacaagaaggcgttgttgttgcgaatgatcaac 177 Query: 481 caattgaggtgcgaagaggttgccatctcacg 512 |||||||||||||||||||||||||||||||| Sbjct: 176 caattgaggtgcgaagaggttgccatctcacg 145 >CG12740-RB feature: mRNA loc=3L:complement(3201539..3201912,3202096..3202338, 3202511..3202610, 3203417..3203587);ID=FBan0012740;gene_id=FBgn0035422;gen e_sym=CG12740;sym=CG12740;scaffold=AE003477;len=888 Length = 888 Score = 1015 bits (512), Expect = 0.0 Identities = 512/512 (100%) Strand = Plus / Minus Query: 1 acggtgtttttaatattttttctttattctcgagtagaaaacagctccgcatagccccaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 684 acggtgtttttaatattttttctttattctcgagtagaaaacagctccgcatagccccaa 625 Query: 61 tctggtacagtttattcgggcttctttcccttagcaaactcggccttctttcccttgacg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 tctggtacagtttattcgggcttctttcccttagcaaactcggccttctttcccttgacg 565 Query: 121 ggggcgggcttctgggagcgcaggacagcggaagcgcggcggagggcagcctgtgtcagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 ggggcgggcttctgggagcgcaggacagcggaagcgcggcggagggcagcctgtgtcagg 505 Query: 181 tccttgcggtacttggagccgataagcaggttcttcagcttcttcagggaacggcgggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 504 tccttgcggtacttggagccgataagcaggttcttcagcttcttcagggaacggcgggga 445 Query: 241 ccggccttgaagtcaacacgcacggtgttcttggcggggcgctgggcatacttgcccttc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 ccggccttgaagtcaacacgcacggtgttcttggcggggcgctgggcatacttgcccttc 385 Query: 301 ttcagcacggcggtgaagcccttcttgtcggcagctggcacgactcccagggtcttcttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 384 ttcagcacggcggtgaagcccttcttgtcggcagctggcacgactcccagggtcttcttg 325 Query: 361 tgcacgatgccgctgtagcggtacgagctcacgctggccaagttgtttggctctgtgctg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 tgcacgatgccgctgtagcggtacgagctcacgctggccaagttgtttggctctgtgctg 265 Query: 421 aagggcttcttcacatcgcgcttcttcaacaagaaggcgttgttgttgcgaatgatcaac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 aagggcttcttcacatcgcgcttcttcaacaagaaggcgttgttgttgcgaatgatcaac 205 Query: 481 caattgaggtgcgaagaggttgccatctcacg 512 |||||||||||||||||||||||||||||||| Sbjct: 204 caattgaggtgcgaagaggttgccatctcacg 173 >CG12740-RA feature: mRNA loc=3L:complement(3201539..3201912,3202096..3202338, 3202511..3202610, 3203556..3203587);ID=FBan0012740;gene_id=FBgn0035422;gen e_sym=CG12740;sym=CG12740;scaffold=AE003477;len=749 Length = 749 Score = 1015 bits (512), Expect = 0.0 Identities = 512/512 (100%) Strand = Plus / Minus Query: 1 acggtgtttttaatattttttctttattctcgagtagaaaacagctccgcatagccccaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 acggtgtttttaatattttttctttattctcgagtagaaaacagctccgcatagccccaa 486 Query: 61 tctggtacagtttattcgggcttctttcccttagcaaactcggccttctttcccttgacg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 tctggtacagtttattcgggcttctttcccttagcaaactcggccttctttcccttgacg 426 Query: 121 ggggcgggcttctgggagcgcaggacagcggaagcgcggcggagggcagcctgtgtcagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 ggggcgggcttctgggagcgcaggacagcggaagcgcggcggagggcagcctgtgtcagg 366 Query: 181 tccttgcggtacttggagccgataagcaggttcttcagcttcttcagggaacggcgggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 tccttgcggtacttggagccgataagcaggttcttcagcttcttcagggaacggcgggga 306 Query: 241 ccggccttgaagtcaacacgcacggtgttcttggcggggcgctgggcatacttgcccttc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 ccggccttgaagtcaacacgcacggtgttcttggcggggcgctgggcatacttgcccttc 246 Query: 301 ttcagcacggcggtgaagcccttcttgtcggcagctggcacgactcccagggtcttcttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 ttcagcacggcggtgaagcccttcttgtcggcagctggcacgactcccagggtcttcttg 186 Query: 361 tgcacgatgccgctgtagcggtacgagctcacgctggccaagttgtttggctctgtgctg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 tgcacgatgccgctgtagcggtacgagctcacgctggccaagttgtttggctctgtgctg 126 Query: 421 aagggcttcttcacatcgcgcttcttcaacaagaaggcgttgttgttgcgaatgatcaac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 aagggcttcttcacatcgcgcttcttcaacaagaaggcgttgttgttgcgaatgatcaac 66 Query: 481 caattgaggtgcgaagaggttgccatctcacg 512 |||||||||||||||||||||||||||||||| Sbjct: 65 caattgaggtgcgaagaggttgccatctcacg 34 >CG12740-RC feature: mRNA loc=3L:complement(3201539..3202338,3202511..3202610, 3203417..3203587);ID=FBan0012740;gene_id=FBgn0035422;gen e_sym=CG12740;sym=CG12740;scaffold=AE003477;len=1071 Length = 1071 Score = 680 bits (343), Expect = 0.0 Identities = 343/343 (100%) Strand = Plus / Minus Query: 170 cctgtgtcaggtccttgcggtacttggagccgataagcaggttcttcagcttcttcaggg 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 515 cctgtgtcaggtccttgcggtacttggagccgataagcaggttcttcagcttcttcaggg 456 Query: 230 aacggcggggaccggccttgaagtcaacacgcacggtgttcttggcggggcgctgggcat 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 455 aacggcggggaccggccttgaagtcaacacgcacggtgttcttggcggggcgctgggcat 396 Query: 290 acttgcccttcttcagcacggcggtgaagcccttcttgtcggcagctggcacgactccca 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 395 acttgcccttcttcagcacggcggtgaagcccttcttgtcggcagctggcacgactccca 336 Query: 350 gggtcttcttgtgcacgatgccgctgtagcggtacgagctcacgctggccaagttgtttg 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 gggtcttcttgtgcacgatgccgctgtagcggtacgagctcacgctggccaagttgtttg 276 Query: 410 gctctgtgctgaagggcttcttcacatcgcgcttcttcaacaagaaggcgttgttgttgc 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 gctctgtgctgaagggcttcttcacatcgcgcttcttcaacaagaaggcgttgttgttgc 216 Query: 470 gaatgatcaaccaattgaggtgcgaagaggttgccatctcacg 512 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 gaatgatcaaccaattgaggtgcgaagaggttgccatctcacg 173 >CG17180-RA feature: mRNA loc=3L:join(521480..521569,521631..522057, 522114..522588, 522646..522779);ID=FBan0017180;gene_id=FBgn0035140;gene_ sym=CG17180;sym=CG17180;scaffold=AE003468;len=1126 Length = 1126 Score = 500 bits (252), Expect = e-141 Identities = 252/252 (100%) Strand = Plus / Plus Query: 536 gtctgcctaaagttccttggattgaaaagagcagtgcagaatgtcgcaccgccaccagga 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 gtctgcctaaagttccttggattgaaaagagcagtgcagaatgtcgcaccgccaccagga 149 Query: 596 cattcccatccgcccacgttacggttatgtggccgaggagagtggcccatcggaaggggc 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 150 cattcccatccgcccacgttacggttatgtggccgaggagagtggcccatcggaaggggc 209 Query: 656 agccaggagttctggatccggagccacgcccgcctcctcctacacggaaattccgttcct 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 agccaggagttctggatccggagccacgcccgcctcctcctacacggaaattccgttcct 269 Query: 716 ggctcagtatccgggagcggtgccagagcacgtgctccaggatctgacgcccacagccac 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 270 ggctcagtatccgggagcggtgccagagcacgtgctccaggatctgacgcccacagccac 329 Query: 776 tggccatgctgc 787 |||||||||||| Sbjct: 330 tggccatgctgc 341 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,723 Number of Sequences: 18737 Number of extensions: 23723 Number of successful extensions: 592 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 586 Number of HSP's gapped (non-prelim): 6 length of query: 787 length of database: 41,270,998 effective HSP length: 17 effective length of query: 770 effective length of database: 40,952,469 effective search space: 31533401130 effective search space used: 31533401130 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BG632373 BG632373|BG632373 GH07363.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07363 3, mRNA sequence. (632 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,890 Number of Sequences: 18737 Number of extensions: 13890 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 267 Number of HSP's gapped (non-prelim): 0 length of query: 632 length of database: 41,270,998 effective HSP length: 17 effective length of query: 615 effective length of database: 40,952,469 effective search space: 25185768435 effective search space used: 25185768435 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BG632827 BG632827|BG632827 GH14618.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH14618 3, mRNA sequence. (427 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9644 Number of Sequences: 18737 Number of extensions: 9644 Number of successful extensions: 771 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 771 Number of HSP's gapped (non-prelim): 0 length of query: 427 length of database: 41,270,998 effective HSP length: 17 effective length of query: 410 effective length of database: 40,952,469 effective search space: 16790512290 effective search space used: 16790512290 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BG635001 BG635001|BG635001 AT31442.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT31442 5, mRNA sequence. (693 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,401 Number of Sequences: 18737 Number of extensions: 12401 Number of successful extensions: 241 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 241 Number of HSP's gapped (non-prelim): 0 length of query: 693 length of database: 41,270,998 effective HSP length: 17 effective length of query: 676 effective length of database: 40,952,469 effective search space: 27683869044 effective search space used: 27683869044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BG639926 BG639926|BG639926 SD08735.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD08735 3, mRNA sequence. (494 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9349 Number of Sequences: 18737 Number of extensions: 9349 Number of successful extensions: 217 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 217 Number of HSP's gapped (non-prelim): 0 length of query: 494 length of database: 41,270,998 effective HSP length: 17 effective length of query: 477 effective length of database: 40,952,469 effective search space: 19534327713 effective search space used: 19534327713 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BG640871 BG640871|BG640871 SD12036.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD12036 5 similar to CG6783: FBan0006783 'ligand binding or carrier' located on: 3R 86E13-86E14;: 04/13/2001, mRNA sequence. (689 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390... 1366 0.0 CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390... 1156 0.0 CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386... 751 0.0 CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386... 751 0.0 >CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=714 Length = 714 Score = 1366 bits (689), Expect = 0.0 Identities = 689/689 (100%) Strand = Plus / Plus Query: 1 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 85 Query: 61 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 145 Query: 121 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 205 Query: 181 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 265 Query: 241 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 325 Query: 301 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 385 Query: 361 cgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgcgtgcgcgtctacaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 cgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgcgtgcgcgtctacaa 445 Query: 421 ggccgtctaagagactgatctaaaactataatatccatacgactacatgcattaaaacta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 ggccgtctaagagactgatctaaaactataatatccatacgactacatgcattaaaacta 505 Query: 481 actcagatagccaatattcttgttgactaacagtgaactaaaccaaatcaaatggaactg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 actcagatagccaatattcttgttgactaacagtgaactaaaccaaatcaaatggaactg 565 Query: 541 cacgctctgcccaatgttaatttataatcgcacccgtacacccgcagtcggtgtatgtgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 cacgctctgcccaatgttaatttataatcgcacccgtacacccgcagtcggtgtatgtgg 625 Query: 601 gaatactcctcgtactcggggaccaatttccgaatgcatttgaataaactattacttgaa 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 gaatactcctcgtactcggggaccaatttccgaatgcatttgaataaactattacttgaa 685 Query: 661 gtgcttttaaaacattccgactttctttt 689 ||||||||||||||||||||||||||||| Sbjct: 686 gtgcttttaaaacattccgactttctttt 714 >CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7390524..7390851, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gene _sym=CG31305;sym=CG31305;scaffold=AE003692;len=1042 Length = 1042 Score = 1156 bits (583), Expect = 0.0 Identities = 583/583 (100%) Strand = Plus / Plus Query: 107 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 519 Query: 167 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 579 Query: 227 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 639 Query: 287 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 699 Query: 347 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 759 Query: 407 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 819 Query: 467 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 820 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 879 Query: 527 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 939 Query: 587 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 999 Query: 647 aactattacttgaagtgcttttaaaacattccgactttctttt 689 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1000 aactattacttgaagtgcttttaaaacattccgactttctttt 1042 >CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 751 bits (379), Expect = 0.0 Identities = 379/379 (100%) Strand = Plus / Plus Query: 1 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 85 Query: 61 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 145 Query: 121 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 205 Query: 181 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 265 Query: 241 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 325 Query: 301 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 385 Query: 361 cgacaacgagctgatcacc 379 ||||||||||||||||||| Sbjct: 386 cgacaacgagctgatcacc 404 >CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 751 bits (379), Expect = 0.0 Identities = 379/379 (100%) Strand = Plus / Plus Query: 1 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 85 Query: 61 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 145 Query: 121 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 205 Query: 181 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 265 Query: 241 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 325 Query: 301 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 385 Query: 361 cgacaacgagctgatcacc 379 ||||||||||||||||||| Sbjct: 386 cgacaacgagctgatcacc 404 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,510 Number of Sequences: 18737 Number of extensions: 18510 Number of successful extensions: 527 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 522 Number of HSP's gapped (non-prelim): 5 length of query: 689 length of database: 41,270,998 effective HSP length: 17 effective length of query: 672 effective length of database: 40,952,469 effective search space: 27520059168 effective search space used: 27520059168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI227714 BI227714|BI227714 RE24931.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE24931 5, mRNA sequence. (645 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,800 Number of Sequences: 18737 Number of extensions: 16800 Number of successful extensions: 653 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 653 Number of HSP's gapped (non-prelim): 0 length of query: 645 length of database: 41,270,998 effective HSP length: 17 effective length of query: 628 effective length of database: 40,952,469 effective search space: 25718150532 effective search space used: 25718150532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI227979 BI227979|BI227979 RE25373.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE25373 5, mRNA sequence. (513 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,844 Number of Sequences: 18737 Number of extensions: 10844 Number of successful extensions: 276 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 276 Number of HSP's gapped (non-prelim): 0 length of query: 513 length of database: 41,270,998 effective HSP length: 17 effective length of query: 496 effective length of database: 40,952,469 effective search space: 20312424624 effective search space used: 20312424624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI230778 BI230778|BI230778 RE15216.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE15216 5, mRNA sequence. (552 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33217-RA feature: mRNA loc=3L:join(23043309..23043396,23043478... 1037 0.0 >CG33217-RA feature: mRNA loc=3L:join(23043309..23043396,23043478..23043678, 23043995..23044529,23044591..23044767, 23045538..23045648,23047788..23047932, 23048467..23048628, 23048686..23049489);ID=FBan0033217;gene_id=FBgn0053217;g ene_sym=CG33217;sym=CG33217;scaffold=AE002786;len=2223 Length = 2223 Score = 1037 bits (523), Expect = 0.0 Identities = 544/552 (98%), Gaps = 1/552 (0%) Strand = Plus / Plus Query: 1 acactaatttgataacagcgtcaaccacatgtcggctttatttataatgttggaatcgaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acactaatttgataacagcgtcaaccacatgtcggctttatttataatgttggaatcgaa 60 Query: 61 ataagttaggaaagtgtgattcagtttgatatcagtatggatcaattcataacttcgact 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ataagttaggaaagtgtgattcagtttgatatcagtatggatcaattcataacttcgact 120 Query: 121 ttgaaaaaccgtagacgacgttctcttggattgcgactcttaatatgttaccttnnnnnn 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttgaaaaaccgtagacgacgttctcttggattgcgactcttaatatgttaccttaaaaaa 180 Query: 181 ngtgacattaaattagaggaaaatgttaatacatggacatatttattagttcaatcatgc 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agtgacattaaattagaggaaaatgttaatacatggacatatttattagttcaatcatgc 240 Query: 241 aaattacctgagttgtgttcatatggtgatttaatattttccgctatggcactccttctg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaattacctgagttgtgttcatatggtgatttaatattttccgctatggcactccttctg 300 Query: 301 gacaaaatccagagtgacggtaatgtgtcaaaagtattcgcatctgctcatttatctaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gacaaaatccagagtgacggtaatgtgtcaaaagtattcgcatctgctcatttatctaaa 360 Query: 361 gtactggaatgcttatctcacaacgaaatatataagcacaatcgctcaactattgctgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gtactggaatgcttatctcacaacgaaatatataagcacaatcgctcaactattgctgcc 420 Query: 421 ttacacacaatcaagaaatgcctaaaatattacccaaaaggaataaaaactaaatcatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttacacacaatcaagaaatgcctaaaatattacccaaaaggaataaaaactaaatcatca 480 Query: 481 agtatcaaaaatatattagtactattaattgacagccaaaaccgatgaagttgtttatca 540 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 481 agtatcaaaaatatattagtactattaattgacagccaaaa-cgatgaagttgtttatca 539 Query: 541 atctggtgaatg 552 |||||||||||| Sbjct: 540 atctggtgaatg 551 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,213 Number of Sequences: 18737 Number of extensions: 10213 Number of successful extensions: 224 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 221 Number of HSP's gapped (non-prelim): 1 length of query: 552 length of database: 41,270,998 effective HSP length: 17 effective length of query: 535 effective length of database: 40,952,469 effective search space: 21909570915 effective search space used: 21909570915 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI233181 BI233181|BI233181 RE29470.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE29470 5, mRNA sequence. (577 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,236 Number of Sequences: 18737 Number of extensions: 13236 Number of successful extensions: 336 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 336 Number of HSP's gapped (non-prelim): 0 length of query: 577 length of database: 41,270,998 effective HSP length: 17 effective length of query: 560 effective length of database: 40,952,469 effective search space: 22933382640 effective search space used: 22933382640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI235189 BI235189|BI235189 RE31004.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE31004 5, mRNA sequence. (662 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,004 Number of Sequences: 18737 Number of extensions: 12004 Number of successful extensions: 311 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 311 Number of HSP's gapped (non-prelim): 0 length of query: 662 length of database: 41,270,998 effective HSP length: 17 effective length of query: 645 effective length of database: 40,952,469 effective search space: 26414342505 effective search space used: 26414342505 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI240162 BI240162|BI240162 RE36839.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE36839 5, mRNA sequence. (368 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7678 Number of Sequences: 18737 Number of extensions: 7678 Number of successful extensions: 543 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 543 Number of HSP's gapped (non-prelim): 0 length of query: 368 length of database: 41,270,998 effective HSP length: 17 effective length of query: 351 effective length of database: 40,952,469 effective search space: 14374316619 effective search space used: 14374316619 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI351640 BI351640|BI351640 GM15484.5prime GM Drosophila melanogaster ovary pOT2 Drosophila melanogaster cDNA clone GM15484 5 similar to sta: FBan0014792 GO:[protein biosynthesis (GO:0006412); cytosolic small ribosomal (40S)-subunit (GO:0005843); ribosomal protein (GO:0003735); ribosomal protein (GO:0003735)] located on: X 1E3-1E3;: 08/13/2002, mRNA sequence. (680 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value sta-RD feature: mRNA loc=X:complement(1239225..1239917,1240110..... 1316 0.0 sta-RB feature: mRNA loc=X:complement(1239228..1239917,1240110..... 1316 0.0 sta-RA feature: mRNA loc=X:complement(1239228..1239917,1240110..... 1316 0.0 >sta-RD feature: mRNA loc=X:complement(1239225..1239917, 1240110..1240457);ID=FBan0014792;gene_id=FBgn0003517;gen e_sym=sta;sym=CG14792;scaffold=AE003421;len=1041 Length = 1041 Score = 1316 bits (664), Expect = 0.0 Identities = 676/680 (99%) Strand = Plus / Minus Query: 1 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 981 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 922 Query: 61 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 921 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 862 Query: 121 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 861 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 802 Query: 181 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 801 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 742 Query: 241 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 682 Query: 301 gcggagcacctcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 gcggagcacttcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 622 Query: 361 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 562 Query: 421 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 502 Query: 481 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 442 Query: 541 cgtgaagcggccggcgatcggagtggtgtcggtgtccttggcgaacttcagcaccgcgcg 600 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 441 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 382 Query: 601 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 322 Query: 661 ggcgcgggcccgcagctgca 680 |||||||||| |||||||| Sbjct: 321 ggcgcgggccgccagctgca 302 >sta-RB feature: mRNA loc=X:complement(1239228..1239917,1240110..1240352, 1240695..1240850);ID=FBan0014792;gene_id=FBgn0003517;gene _sym=sta;sym=CG14792;scaffold=AE003421;len=1089 Length = 1089 Score = 1316 bits (664), Expect = 0.0 Identities = 676/680 (99%) Strand = Plus / Minus Query: 1 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 973 Query: 61 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 972 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 913 Query: 121 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 912 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 853 Query: 181 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 852 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 793 Query: 241 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 733 Query: 301 gcggagcacctcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 732 gcggagcacttcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 673 Query: 361 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 672 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 613 Query: 421 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 612 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 553 Query: 481 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 552 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 493 Query: 541 cgtgaagcggccggcgatcggagtggtgtcggtgtccttggcgaacttcagcaccgcgcg 600 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 492 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 433 Query: 601 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 373 Query: 661 ggcgcgggcccgcagctgca 680 |||||||||| |||||||| Sbjct: 372 ggcgcgggccgccagctgca 353 >sta-RA feature: mRNA loc=X:complement(1239228..1239917,1240110..1240352, 1240548..1240850);ID=FBan0014792;gene_id=FBgn0003517;gene _sym=sta;sym=CG14792;scaffold=AE003421;len=1236 Length = 1236 Score = 1316 bits (664), Expect = 0.0 Identities = 676/680 (99%) Strand = Plus / Minus Query: 1 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1179 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 1120 Query: 61 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1119 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 1060 Query: 121 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1059 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 1000 Query: 181 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 999 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 940 Query: 241 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 939 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 880 Query: 301 gcggagcacctcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 879 gcggagcacttcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 820 Query: 361 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 819 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 760 Query: 421 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 700 Query: 481 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 699 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 640 Query: 541 cgtgaagcggccggcgatcggagtggtgtcggtgtccttggcgaacttcagcaccgcgcg 600 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 639 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 580 Query: 601 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 520 Query: 661 ggcgcgggcccgcagctgca 680 |||||||||| |||||||| Sbjct: 519 ggcgcgggccgccagctgca 500 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,085 Number of Sequences: 18737 Number of extensions: 20085 Number of successful extensions: 592 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 589 Number of HSP's gapped (non-prelim): 3 length of query: 680 length of database: 41,270,998 effective HSP length: 17 effective length of query: 663 effective length of database: 40,952,469 effective search space: 27151486947 effective search space used: 27151486947 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI352817 BI352817|BI352817 GM20929.5prime GM Drosophila melanogaster ovary pOT2 Drosophila melanogaster cDNA clone GM20929 5, mRNA sequence. (292 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6764 Number of Sequences: 18737 Number of extensions: 6764 Number of successful extensions: 531 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 531 Number of HSP's gapped (non-prelim): 0 length of query: 292 length of database: 41,270,998 effective HSP length: 16 effective length of query: 276 effective length of database: 40,971,206 effective search space: 11308052856 effective search space used: 11308052856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI353603 BI353603|BI353603 GM24362.5prime GM Drosophila melanogaster ovary pOT2 Drosophila melanogaster cDNA clone GM24362 5, mRNA sequence. (448 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7253 Number of Sequences: 18737 Number of extensions: 7253 Number of successful extensions: 484 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 484 Number of HSP's gapped (non-prelim): 0 length of query: 448 length of database: 41,270,998 effective HSP length: 17 effective length of query: 431 effective length of database: 40,952,469 effective search space: 17650514139 effective search space used: 17650514139 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI355674 BI355674|BI355674 GM31840.5prime GM Drosophila melanogaster ovary pOT2 Drosophila melanogaster cDNA clone GM31840 5, mRNA sequence. (366 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33237-RA feature: mRNA loc=X:complement(13790215..13790719,137... 476 e-134 CG33247-RA feature: mRNA loc=X:complement(13777552..13778056,137... 474 e-133 CG33239-RA feature: mRNA loc=X:complement(13787675..13788179,137... 468 e-131 CG33246-RA feature: mRNA loc=X:complement(13778791..13779295,137... 468 e-131 CG33242-RA feature: mRNA loc=X:complement(13783866..13784368,137... 468 e-131 CG33241-RA feature: mRNA loc=X:complement(13785137..13785641,137... 468 e-131 Ste12DOR-RA feature: mRNA loc=X:join(13730869..13730879,13730937... 460 e-129 CG33236-RA feature: mRNA loc=X:complement(13791465..13791987,137... 460 e-129 CG33245-RA feature: mRNA loc=X:complement(13779948..13780564,137... 460 e-129 CG33244-RA feature: mRNA loc=X:complement(13781311..13781833,137... 460 e-129 CG33240-RA feature: mRNA loc=X:complement(13786406..13786910,137... 452 e-127 CG33238-RA feature: mRNA loc=X:complement(13788944..13789448,137... 452 e-127 CG33243-RA feature: mRNA loc=X:complement(13782598..13783102,137... 444 e-124 >CG33237-RA feature: mRNA loc=X:complement(13790215..13790719, 13790777..13790787);ID=FBan0033237;gene_id=FBgn0053237;g ene_sym=CG33237;sym=CG33237;scaffold=AE003494;len=516 Length = 516 Score = 476 bits (240), Expect = e-134 Identities = 264/272 (97%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33247-RA feature: mRNA loc=X:complement(13777552..13778056, 13778114..13778124);ID=FBan0033247;gene_id=FBgn0053247;g ene_sym=CG33247;sym=CG33247;scaffold=AE003494;len=516 Length = 516 Score = 474 bits (239), Expect = e-133 Identities = 263/271 (97%) Strand = Plus / Plus Query: 2 cagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgtc 61 ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 242 cagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgtc 301 Query: 62 ccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggca 121 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 302 ccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggca 361 Query: 122 agtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgata 181 ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 362 agtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgata 421 Query: 182 cacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctgc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 cacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctgc 481 Query: 242 cgaacttgagatcgcccctggacgacccacg 272 ||||||||| ||||||||||||||||||||| Sbjct: 482 cgaacttgacatcgcccctggacgacccacg 512 >CG33239-RA feature: mRNA loc=X:complement(13787675..13788179, 13788288..13788298);ID=FBan0033239;gene_id=FBgn0053239;g ene_sym=CG33239;sym=CG33239;scaffold=AE003494;len=516 Length = 516 Score = 468 bits (236), Expect = e-131 Identities = 263/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33246-RA feature: mRNA loc=X:complement(13778791..13779295, 13779353..13779363);ID=FBan0033246;gene_id=FBgn0053246;g ene_sym=CG33246;sym=CG33246;scaffold=AE003494;len=516 Length = 516 Score = 468 bits (236), Expect = e-131 Identities = 263/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaacttttatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33242-RA feature: mRNA loc=X:complement(13783866..13784368, 13784430..13784440);ID=FBan0033242;gene_id=FBgn0053242;g ene_sym=CG33242;sym=CG33242;scaffold=AE003494;len=514 Length = 514 Score = 468 bits (236), Expect = e-131 Identities = 263/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 238 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 297 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 298 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 357 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 358 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 417 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 418 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 477 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 478 ccgaacttgacatcgcccctggacgacccacg 509 >CG33241-RA feature: mRNA loc=X:complement(13785137..13785641, 13785699..13785709);ID=FBan0033241;gene_id=FBgn0053241;g ene_sym=CG33241;sym=CG33241;scaffold=AE003494;len=516 Length = 516 Score = 468 bits (236), Expect = e-131 Identities = 263/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >Ste12DOR-RA feature: mRNA loc=X:join(13730869..13730879, 13730937..13731441);ID=FBan0032616;gene_id=FBgn0044817;g ene_sym=Ste12DOR;sym=CG32616;scaffold=AE003494;len=516 Length = 516 Score = 460 bits (232), Expect = e-129 Identities = 262/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcgtcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33236-RA feature: mRNA loc=X:complement(13791465..13791987, 13792045..13792055);ID=FBan0033236;gene_id=FBgn0052605;g ene_sym=CG33236;sym=CG33236;scaffold=AE003494;len=534 Length = 534 Score = 460 bits (232), Expect = e-129 Identities = 262/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33245-RA feature: mRNA loc=X:complement(13779948..13780564, 13780622..13780632);ID=FBan0033245;gene_id=FBgn0053245;g ene_sym=CG33245;sym=CG33245;scaffold=AE003494;len=628 Length = 628 Score = 460 bits (232), Expect = e-129 Identities = 262/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33244-RA feature: mRNA loc=X:complement(13781311..13781833, 13781891..13781901);ID=FBan0033244;gene_id=FBgn0053244;g ene_sym=CG33244;sym=CG33244;scaffold=AE003494;len=534 Length = 534 Score = 460 bits (232), Expect = e-129 Identities = 262/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33240-RA feature: mRNA loc=X:complement(13786406..13786910, 13786968..13786978);ID=FBan0033240;gene_id=FBgn0053240;g ene_sym=CG33240;sym=CG33240;scaffold=AE003494;len=516 Length = 516 Score = 452 bits (228), Expect = e-127 Identities = 261/272 (95%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgc 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33238-RA feature: mRNA loc=X:complement(13788944..13789448, 13789511..13789518);ID=FBan0033238;gene_id=FBgn0052605;g ene_sym=CG33238;sym=CG33238;scaffold=AE003494;len=513 Length = 513 Score = 452 bits (228), Expect = e-127 Identities = 261/272 (95%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 238 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgt 297 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 298 cccaatatctcctgttataggcagaacaccctgccagtgggcctcagcgctgtatggggc 357 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 358 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 417 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 418 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 477 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 478 ccgaacttgacatcgcccctggacgacccacg 509 >CG33243-RA feature: mRNA loc=X:complement(13782598..13783102, 13783160..13783170);ID=FBan0033243;gene_id=FBgn0053243;g ene_sym=CG33243;sym=CG33243;scaffold=AE003494;len=516 Length = 516 Score = 444 bits (224), Expect = e-124 Identities = 260/272 (95%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgc 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgttataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6648 Number of Sequences: 18737 Number of extensions: 6648 Number of successful extensions: 405 Number of sequences better than 1.0e-100: 13 Number of HSP's better than 0.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 391 Number of HSP's gapped (non-prelim): 14 length of query: 366 length of database: 41,270,998 effective HSP length: 17 effective length of query: 349 effective length of database: 40,952,469 effective search space: 14292411681 effective search space used: 14292411681 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI356916 BI356916|BI356916 RE43210.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE43210 5, mRNA sequence. (528 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,396 Number of Sequences: 18737 Number of extensions: 10396 Number of successful extensions: 190 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 190 Number of HSP's gapped (non-prelim): 0 length of query: 528 length of database: 41,270,998 effective HSP length: 17 effective length of query: 511 effective length of database: 40,952,469 effective search space: 20926711659 effective search space used: 20926711659 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI357647 BI357647|BI357647 RE44177.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE44177 5, mRNA sequence. (221 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4956 Number of Sequences: 18737 Number of extensions: 4956 Number of successful extensions: 383 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 383 Number of HSP's gapped (non-prelim): 0 length of query: 221 length of database: 41,270,998 effective HSP length: 16 effective length of query: 205 effective length of database: 40,971,206 effective search space: 8399097230 effective search space used: 8399097230 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI361518 BI361518|BI361518 RE45760.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE45760 5, mRNA sequence. (603 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4774-RC feature: mRNA loc=3R:complement(21500321..21500587,215... 367 e-101 CG4774-RB feature: mRNA loc=3R:complement(21500321..21500587,215... 367 e-101 CG4774-RA feature: mRNA loc=3R:complement(21500321..21500587,215... 367 e-101 >CG4774-RC feature: mRNA loc=3R:complement(21500321..21500587,21500654..21500789, 21500855..21501070,21501402..21501953, 21502033..21502219);ID=FBan0004774;gene_id=FBgn0039360;g ene_sym=CG4774;sym=CG4774;scaffold=AE003753;len=1358 Length = 1358 Score = 367 bits (185), Expect = e-101 Identities = 185/185 (100%) Strand = Plus / Minus Query: 419 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 955 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 896 Query: 479 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 895 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 836 Query: 539 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 835 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 776 Query: 599 ctgcg 603 ||||| Sbjct: 775 ctgcg 771 >CG4774-RB feature: mRNA loc=3R:complement(21500321..21500587,21500654..21500789, 21500855..21501070,21501402..21502101, 21502338..21502457);ID=FBan0004774;gene_id=FBgn0039360;ge ne_sym=CG4774;sym=CG4774;scaffold=AE003753;len=1439 Length = 1439 Score = 367 bits (185), Expect = e-101 Identities = 185/185 (100%) Strand = Plus / Minus Query: 419 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 977 Query: 479 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 917 Query: 539 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 857 Query: 599 ctgcg 603 ||||| Sbjct: 856 ctgcg 852 >CG4774-RA feature: mRNA loc=3R:complement(21500321..21500587,21500654..21500789, 21500855..21501070,21501402..21501953, 21502069..21502226);ID=FBan0004774;gene_id=FBgn0039360;g ene_sym=CG4774;sym=CG4774;scaffold=AE003753;len=1329 Length = 1329 Score = 367 bits (185), Expect = e-101 Identities = 185/185 (100%) Strand = Plus / Minus Query: 419 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 926 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 867 Query: 479 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 866 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 807 Query: 539 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 806 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 747 Query: 599 ctgcg 603 ||||| Sbjct: 746 ctgcg 742 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,175 Number of Sequences: 18737 Number of extensions: 14175 Number of successful extensions: 328 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 313 Number of HSP's gapped (non-prelim): 12 length of query: 603 length of database: 41,270,998 effective HSP length: 17 effective length of query: 586 effective length of database: 40,952,469 effective search space: 23998146834 effective search space used: 23998146834 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI364854 BI364854|BI364854 RE50045.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE50045 5, mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31771-RA feature: mRNA loc=2L:complement(14021995..14022591,14... 444 e-124 >CG31771-RA feature: mRNA loc=2L:complement(14021995..14022591,14022870..14022974, 14025073..14025316);ID=FBan0031771;gene_id=FBgn0028873;g ene_sym=CG31771;sym=CG31771;scaffold=AE003642;len=946 Length = 946 Score = 444 bits (224), Expect = e-124 Identities = 224/224 (100%) Strand = Plus / Minus Query: 1 aatgctgcacgggcatcgggctcagttggtgttccggtttcgggttgtgctgtcagttgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 aatgctgcacgggcatcgggctcagttggtgttccggtttcgggttgtgctgtcagttgc 559 Query: 61 ctttttgcacagcggctgagcgattgagcgattgaacgattgaacggttggacggctgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 ctttttgcacagcggctgagcgattgagcgattgaacgattgaacggttggacggctgag 499 Query: 121 cgctggagcggttgagagtgtgccatcggagccggagagtcctaacgcgttgcccgtggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 cgctggagcggttgagagtgtgccatcggagccggagagtcctaacgcgttgcccgtggc 439 Query: 181 ctgtgtccgcatccgtatccgtatctccgtgcgtctctctccgg 224 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 ctgtgtccgcatccgtatccgtatctccgtgcgtctctctccgg 395 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,249 Number of Sequences: 18737 Number of extensions: 12249 Number of successful extensions: 343 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 340 Number of HSP's gapped (non-prelim): 1 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI367556 BI367556|BI367556 RE53348.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE53348 5 similar to CG14830: FBan0014830 located on: 3L 65E10-65E10;: 05/14/2001, mRNA sequence. (595 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14830-RA feature: mRNA loc=3L:complement(7210241..7211147,7211... 815 0.0 >CG14830-RA feature: mRNA loc=3L:complement(7210241..7211147,7211209..7211637, 7211705..7211825,7222478..7222624, 7223272..7223446);ID=FBan0014830;gene_id=FBgn0035755;gene _sym=CG14830;sym=CG14830;scaffold=AE003559;len=1779 Length = 1779 Score = 815 bits (411), Expect = 0.0 Identities = 420/423 (99%) Strand = Plus / Minus Query: 173 aggatcccctttcatcaaaccgcatatgtatgtacatacatacatatgtacatatgcata 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456 aggatcccctttcatcaaaccgcatatgtatgtacatacatacatatgtacatatgcata 1397 Query: 233 acaatcagtatcgctggctctcgcgatccgagtatttgccactcagcttgctaaccgaat 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1396 acaatcagtatcgctggctctcgcgatccgagtatttgccactcagcttgctaaccgaat 1337 Query: 293 agcgatccgagtaggcatcgtacttgtccgccttgtagttgatctcctgcggcgtgtatc 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1336 agcgatccgagtaggcatcgtacttgtccgccttgtagttgatctcctgcggcgtgtatc 1277 Query: 353 cgatattcttctgccagtgccgcgtccagtagagatcctcgttgcgcacctgcgatggcg 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 cgatattcttctgccagtgccgcgtccagtagagatcctcgttgcgcacctgcgatggcg 1217 Query: 413 tcttcgcatcccggaacacgtacacacagtagatcatgcagccgattagcgtgaggaagc 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1216 tcttcgcatcccggaacacgtacacacagtagatcatgcagccgattagcgtgaggaagc 1157 Query: 473 cgaagaccaggaacacaattcccagtatccacacgtacagtggctcataggactgcacca 532 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1156 cgaagaccaggaacacaattcccagtatccacacgtacagtggctcatagaactgcacca 1097 Query: 533 caatgacgaatcctagcgtcaccagaatcaagcccaagttgagcaacagcatcagacagc 592 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 1096 caatgacgaatcctagcgtcaccaggatcaggcccaagttgagcaacagcatcagacagc 1037 Query: 593 aca 595 ||| Sbjct: 1036 aca 1034 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,251 Number of Sequences: 18737 Number of extensions: 16251 Number of successful extensions: 923 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 918 Number of HSP's gapped (non-prelim): 4 length of query: 595 length of database: 41,270,998 effective HSP length: 17 effective length of query: 578 effective length of database: 40,952,469 effective search space: 23670527082 effective search space used: 23670527082 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI368090 BI368090|BI368090 RE54004.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE54004 5, mRNA sequence. (560 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,112 Number of Sequences: 18737 Number of extensions: 11112 Number of successful extensions: 304 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 304 Number of HSP's gapped (non-prelim): 0 length of query: 560 length of database: 41,270,998 effective HSP length: 17 effective length of query: 543 effective length of database: 40,952,469 effective search space: 22237190667 effective search space used: 22237190667 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI375639 BI375639|BI375639 RE63496.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE63496 5, mRNA sequence. (544 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,816 Number of Sequences: 18737 Number of extensions: 10816 Number of successful extensions: 213 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 213 Number of HSP's gapped (non-prelim): 0 length of query: 544 length of database: 41,270,998 effective HSP length: 17 effective length of query: 527 effective length of database: 40,952,469 effective search space: 21581951163 effective search space used: 21581951163 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI482420 BI482420|BI482420 RE65113.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE65113 5, mRNA sequence. (628 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,036 Number of Sequences: 18737 Number of extensions: 14036 Number of successful extensions: 294 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 294 Number of HSP's gapped (non-prelim): 0 length of query: 628 length of database: 41,270,998 effective HSP length: 17 effective length of query: 611 effective length of database: 40,952,469 effective search space: 25021958559 effective search space used: 25021958559 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI482845 BI482845|BI482845 RE65620.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE65620 5, mRNA sequence. (394 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8920 Number of Sequences: 18737 Number of extensions: 8920 Number of successful extensions: 800 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 800 Number of HSP's gapped (non-prelim): 0 length of query: 394 length of database: 41,270,998 effective HSP length: 17 effective length of query: 377 effective length of database: 40,952,469 effective search space: 15439080813 effective search space used: 15439080813 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI483168 BI483168|BI483168 RE66017.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE66017 5, mRNA sequence. (565 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,215 Number of Sequences: 18737 Number of extensions: 12215 Number of successful extensions: 269 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 269 Number of HSP's gapped (non-prelim): 0 length of query: 565 length of database: 41,270,998 effective HSP length: 17 effective length of query: 548 effective length of database: 40,952,469 effective search space: 22441953012 effective search space used: 22441953012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI485269 BI485269|BI485269 RE68569.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE68569 5, mRNA sequence. (653 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,103 Number of Sequences: 18737 Number of extensions: 15103 Number of successful extensions: 372 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 372 Number of HSP's gapped (non-prelim): 0 length of query: 653 length of database: 41,270,998 effective HSP length: 17 effective length of query: 636 effective length of database: 40,952,469 effective search space: 26045770284 effective search space used: 26045770284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI486752 BI486752|BI486752 RE70209.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE70209 5 similar to CG12533: FBan0012533 GO:[] located on: X 18E5-18E5;: 05/17/2001, mRNA sequence. (584 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32530-RB feature: mRNA loc=X:join(19475393..19475641,19475715.... 1138 0.0 CG32530-RA feature: mRNA loc=X:join(19475393..19475641,19475715.... 1138 0.0 >CG32530-RB feature: mRNA loc=X:join(19475393..19475641, 19475715..19476707);ID=FBan0032530;gene_id=FBgn0052530;g ene_sym=CG32530;sym=CG32530;scaffold=AE003513;len=1242 Length = 1242 Score = 1138 bits (574), Expect = 0.0 Identities = 583/585 (99%), Gaps = 1/585 (0%) Strand = Plus / Plus Query: 1 agtgttggccagcgtgcgattcggaatggagtcgcgagtccgaaactgcgacacgcgcag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agtgttggccagcgtgcgattcggaatggagtcgcgagtccgaaactgcgacacgcgcag 60 Query: 61 gtaaatggaaaacacaagtcgcctcctccgccgctgatgatgggaagcaattatcccgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtaaatggaaaacacaagtcgcctcctccgccgctgatgatgggaagcaattatcccgag 120 Query: 121 cacgggaccaagccgagatccgccaaataccacaaacaacagaaccaccgagtggtgcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cacgggaccaagccgagatccgccaaataccacaaacaacagaaccaccgagtggtgcgc 180 Query: 181 aagcagccgccgcgtcccgctgttagcgaccgccacaacatctacatcaccagcaagaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aagcagccgccgcgtcccgctgttagcgaccgccacaacatctacatcaccagcaagaca 240 Query: 241 gactttaaggcccagcagcgccgctgcgaggagctgattaactccggcgcccacgagatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gactttaaggcccagcagcgccgctgcgaggagctgattaactccggcgcccacgagatc 300 Query: 301 tttctgcattgcatgggcttctccgtaacccgcggcctcaatatcgccctacgcctcgtc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tttctgcattgcatgggcttctccgtaacccgcggcctcaatatcgccctacgcctcgtc 360 Query: 361 cagaattctgacggc-cccttagctacgccatcaacacctccaccgttcagctggtggac 419 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 cagaattctgacggcgcccttagctacgccatcaacacctccaccgttcagctggtggac 420 Query: 420 gaactgcacccgctgtgcgatgccgaggacataaccttccgccagcgcaacaactcggcc 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gaactgcacccgctgtgcgatgccgaggacataaccttccgccagcgcaacaactcggcc 480 Query: 480 ctgcacatcaagatcctcaataacagtctcttcgacatcgccgtgccgcaaccgtcgcag 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ctgcacatcaagatcctcaataacagtctcttcgacatcgccgtgccgcaaccgtcgcag 540 Query: 540 tcccagacgcaagcccagtccctgggccagttncgaggcaaggcg 584 |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 541 tcccagacgcaagcccagtccctgggccagttccgaggcaaggcg 585 >CG32530-RA feature: mRNA loc=X:join(19475393..19475641, 19475715..19476707);ID=FBan0032530;gene_id=FBgn0052530;g ene_sym=CG32530;sym=CG32530;scaffold=AE003513;len=1242 Length = 1242 Score = 1138 bits (574), Expect = 0.0 Identities = 583/585 (99%), Gaps = 1/585 (0%) Strand = Plus / Plus Query: 1 agtgttggccagcgtgcgattcggaatggagtcgcgagtccgaaactgcgacacgcgcag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agtgttggccagcgtgcgattcggaatggagtcgcgagtccgaaactgcgacacgcgcag 60 Query: 61 gtaaatggaaaacacaagtcgcctcctccgccgctgatgatgggaagcaattatcccgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtaaatggaaaacacaagtcgcctcctccgccgctgatgatgggaagcaattatcccgag 120 Query: 121 cacgggaccaagccgagatccgccaaataccacaaacaacagaaccaccgagtggtgcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cacgggaccaagccgagatccgccaaataccacaaacaacagaaccaccgagtggtgcgc 180 Query: 181 aagcagccgccgcgtcccgctgttagcgaccgccacaacatctacatcaccagcaagaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aagcagccgccgcgtcccgctgttagcgaccgccacaacatctacatcaccagcaagaca 240 Query: 241 gactttaaggcccagcagcgccgctgcgaggagctgattaactccggcgcccacgagatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gactttaaggcccagcagcgccgctgcgaggagctgattaactccggcgcccacgagatc 300 Query: 301 tttctgcattgcatgggcttctccgtaacccgcggcctcaatatcgccctacgcctcgtc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tttctgcattgcatgggcttctccgtaacccgcggcctcaatatcgccctacgcctcgtc 360 Query: 361 cagaattctgacggc-cccttagctacgccatcaacacctccaccgttcagctggtggac 419 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 cagaattctgacggcgcccttagctacgccatcaacacctccaccgttcagctggtggac 420 Query: 420 gaactgcacccgctgtgcgatgccgaggacataaccttccgccagcgcaacaactcggcc 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gaactgcacccgctgtgcgatgccgaggacataaccttccgccagcgcaacaactcggcc 480 Query: 480 ctgcacatcaagatcctcaataacagtctcttcgacatcgccgtgccgcaaccgtcgcag 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ctgcacatcaagatcctcaataacagtctcttcgacatcgccgtgccgcaaccgtcgcag 540 Query: 540 tcccagacgcaagcccagtccctgggccagttncgaggcaaggcg 584 |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 541 tcccagacgcaagcccagtccctgggccagttccgaggcaaggcg 585 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,537 Number of Sequences: 18737 Number of extensions: 16537 Number of successful extensions: 451 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 447 Number of HSP's gapped (non-prelim): 2 length of query: 584 length of database: 41,270,998 effective HSP length: 17 effective length of query: 567 effective length of database: 40,952,469 effective search space: 23220049923 effective search space used: 23220049923 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI564470 BI564470|BI564470 RH61753.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH61753 5, mRNA sequence. (323 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8103 Number of Sequences: 18737 Number of extensions: 8103 Number of successful extensions: 642 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 642 Number of HSP's gapped (non-prelim): 0 length of query: 323 length of database: 41,270,998 effective HSP length: 16 effective length of query: 307 effective length of database: 40,971,206 effective search space: 12578160242 effective search space used: 12578160242 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI565046 BI565046|BI565046 RH62702.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH62702 5, mRNA sequence. (618 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,938 Number of Sequences: 18737 Number of extensions: 15938 Number of successful extensions: 1386 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1386 Number of HSP's gapped (non-prelim): 0 length of query: 618 length of database: 41,270,998 effective HSP length: 17 effective length of query: 601 effective length of database: 40,952,469 effective search space: 24612433869 effective search space used: 24612433869 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI565139 BI565139|BI565139 RH62830.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH62830 5, mRNA sequence. (324 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6376 Number of Sequences: 18737 Number of extensions: 6376 Number of successful extensions: 492 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 492 Number of HSP's gapped (non-prelim): 0 length of query: 324 length of database: 41,270,998 effective HSP length: 16 effective length of query: 308 effective length of database: 40,971,206 effective search space: 12619131448 effective search space used: 12619131448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI566365 BI566365|BI566365 RH35585.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH35585 5, mRNA sequence. (646 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,452 Number of Sequences: 18737 Number of extensions: 13452 Number of successful extensions: 276 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 276 Number of HSP's gapped (non-prelim): 0 length of query: 646 length of database: 41,270,998 effective HSP length: 17 effective length of query: 629 effective length of database: 40,952,469 effective search space: 25759103001 effective search space used: 25759103001 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI567716 BI567716|BI567716 RH38275.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH38275 5, mRNA sequence. (661 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,594 Number of Sequences: 18737 Number of extensions: 17594 Number of successful extensions: 381 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 381 Number of HSP's gapped (non-prelim): 0 length of query: 661 length of database: 41,270,998 effective HSP length: 17 effective length of query: 644 effective length of database: 40,952,469 effective search space: 26373390036 effective search space used: 26373390036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI570145 BI570145|BI570145 RH02410.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH02410 5, mRNA sequence. (645 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,696 Number of Sequences: 18737 Number of extensions: 10696 Number of successful extensions: 223 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 223 Number of HSP's gapped (non-prelim): 0 length of query: 645 length of database: 41,270,998 effective HSP length: 17 effective length of query: 628 effective length of database: 40,952,469 effective search space: 25718150532 effective search space used: 25718150532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI570800 BI570800|BI570800 RH05583.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH05583 5, mRNA sequence. (599 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,342 Number of Sequences: 18737 Number of extensions: 15342 Number of successful extensions: 356 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 356 Number of HSP's gapped (non-prelim): 0 length of query: 599 length of database: 41,270,998 effective HSP length: 17 effective length of query: 582 effective length of database: 40,952,469 effective search space: 23834336958 effective search space used: 23834336958 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI571358 BI571358|BI571358 RH06221.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH06221 5 similar to CG6783: FBan0006783 GO:[ligand binding or carrier (GO:0005488)] located on: 3R 86E13-86E14;: 07/26/2001, mRNA sequence. (691 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390... 1368 0.0 CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390... 1108 0.0 CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386... 801 0.0 CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386... 801 0.0 >CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=714 Length = 714 Score = 1368 bits (690), Expect = 0.0 Identities = 690/690 (100%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggca 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggca 420 Query: 422 acgttaagtgcgtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatc 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acgttaagtgcgtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatc 480 Query: 482 catacgactacatgcattaaaactaactcagatagccaatattcttgttgactaacagtg 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 catacgactacatgcattaaaactaactcagatagccaatattcttgttgactaacagtg 540 Query: 542 aactaaaccaaatcaaatggaactgcacgctctgcccaatgttaatttataatcgcaccc 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 aactaaaccaaatcaaatggaactgcacgctctgcccaatgttaatttataatcgcaccc 600 Query: 602 gtacacccgcagtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaat 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gtacacccgcagtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaat 660 Query: 662 gcatttgaataaactattacttgaagtgct 691 |||||||||||||||||||||||||||||| Sbjct: 661 gcatttgaataaactattacttgaagtgct 690 >CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7390524..7390851, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gene _sym=CG31305;sym=CG31305;scaffold=AE003692;len=1042 Length = 1042 Score = 1108 bits (559), Expect = 0.0 Identities = 559/559 (100%) Strand = Plus / Plus Query: 133 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 519 Query: 193 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 579 Query: 253 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 639 Query: 313 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 699 Query: 373 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 759 Query: 433 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 819 Query: 493 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 820 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 879 Query: 553 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 939 Query: 613 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 999 Query: 673 aactattacttgaagtgct 691 ||||||||||||||||||| Sbjct: 1000 aactattacttgaagtgct 1018 >CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 801 bits (404), Expect = 0.0 Identities = 404/404 (100%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 405 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 404 >CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 801 bits (404), Expect = 0.0 Identities = 404/404 (100%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 405 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 404 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,433 Number of Sequences: 18737 Number of extensions: 18433 Number of successful extensions: 517 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 512 Number of HSP's gapped (non-prelim): 5 length of query: 691 length of database: 41,270,998 effective HSP length: 17 effective length of query: 674 effective length of database: 40,952,469 effective search space: 27601964106 effective search space used: 27601964106 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI571451 BI571451|BI571451 RH06474.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH06474 5, mRNA sequence. (673 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,074 Number of Sequences: 18737 Number of extensions: 15074 Number of successful extensions: 599 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 599 Number of HSP's gapped (non-prelim): 0 length of query: 673 length of database: 41,270,998 effective HSP length: 17 effective length of query: 656 effective length of database: 40,952,469 effective search space: 26864819664 effective search space used: 26864819664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI572047 BI572047|BI572047 RH07382.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH07382 5, mRNA sequence. (523 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9110 Number of Sequences: 18737 Number of extensions: 9110 Number of successful extensions: 133 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133 Number of HSP's gapped (non-prelim): 0 length of query: 523 length of database: 41,270,998 effective HSP length: 17 effective length of query: 506 effective length of database: 40,952,469 effective search space: 20721949314 effective search space used: 20721949314 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI574088 BI574088|BI574088 RH09485.3prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH09485 3, mRNA sequence. (516 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9987 Number of Sequences: 18737 Number of extensions: 9987 Number of successful extensions: 261 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 0 length of query: 516 length of database: 41,270,998 effective HSP length: 17 effective length of query: 499 effective length of database: 40,952,469 effective search space: 20435282031 effective search space used: 20435282031 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI574089 BI574089|BI574089 RH09485.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH09485 5, mRNA sequence. (516 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,005 Number of Sequences: 18737 Number of extensions: 10005 Number of successful extensions: 261 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 0 length of query: 516 length of database: 41,270,998 effective HSP length: 17 effective length of query: 499 effective length of database: 40,952,469 effective search space: 20435282031 effective search space used: 20435282031 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI575699 BI575699|BI575699 RH31485.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH31485 5, mRNA sequence. (492 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,478 Number of Sequences: 18737 Number of extensions: 10478 Number of successful extensions: 243 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 243 Number of HSP's gapped (non-prelim): 0 length of query: 492 length of database: 41,270,998 effective HSP length: 17 effective length of query: 475 effective length of database: 40,952,469 effective search space: 19452422775 effective search space used: 19452422775 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI579863 BI579863|BI579863 RE73965.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE73965 5, mRNA sequence. (658 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32015-RB feature: mRNA loc=4:join(1205161..1205222,1205888..12... 525 e-148 CG32015-RA feature: mRNA loc=4:join(1205193..1205354,1205861..12... 525 e-148 >CG32015-RB feature: mRNA loc=4:join(1205161..1205222,1205888..1206022, 1206910..1207002, 1207123..1207272);ID=FBan0032015;gene_id=FBgn0052015;gen e_sym=CG32015;sym=CG32015;scaffold=AE003846;len=440 Length = 440 Score = 525 bits (265), Expect = e-148 Identities = 279/286 (97%) Strand = Plus / Plus Query: 152 ctaagaaatcaaaaacaaatgaatatgataaccaaaatataaatatgnnnnnnngtttta 211 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 151 ctaagaaatcaaaaacaaatgaatatgataaccaaaatataaatatgaaaaaaagtttta 210 Query: 212 cgaaattcgatgatctacaaaaacgtaatgttattcatgtacgttcacgagattctaaaa 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 cgaaattcgatgatctacaaaaacgtaatgttattcatgtacgttcacgagattctaaaa 270 Query: 272 aagctcaatcactttttcgatctacaatacctgagaaggttgaaaactgccaccaatgca 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 aagctcaatcactttttcgatctacaatacctgagaaggttgaaaactgccaccaatgca 330 Query: 332 agaaacccgtgtacaaaatggaggaagtcattcttagtttgaagacagcaacgactattt 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 agaaacccgtgtacaaaatggaggaagtcattcttagtttgaagacagcaacgactattt 390 Query: 392 tccataaaacgtgcttacgttgcaaggactgtggcaaacaccttaa 437 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 tccataaaacgtgcttacgttgcaaggactgtggcaaacaccttaa 436 >CG32015-RA feature: mRNA loc=4:join(1205193..1205354,1205861..1206022, 1206910..1207002, 1207123..1207272);ID=FBan0032015;gene_id=FBgn0052015;gen e_sym=CG32015;sym=CG32015;scaffold=AE003846;len=567 Length = 567 Score = 525 bits (265), Expect = e-148 Identities = 279/286 (97%) Strand = Plus / Plus Query: 152 ctaagaaatcaaaaacaaatgaatatgataaccaaaatataaatatgnnnnnnngtttta 211 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 278 ctaagaaatcaaaaacaaatgaatatgataaccaaaatataaatatgaaaaaaagtttta 337 Query: 212 cgaaattcgatgatctacaaaaacgtaatgttattcatgtacgttcacgagattctaaaa 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 cgaaattcgatgatctacaaaaacgtaatgttattcatgtacgttcacgagattctaaaa 397 Query: 272 aagctcaatcactttttcgatctacaatacctgagaaggttgaaaactgccaccaatgca 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 aagctcaatcactttttcgatctacaatacctgagaaggttgaaaactgccaccaatgca 457 Query: 332 agaaacccgtgtacaaaatggaggaagtcattcttagtttgaagacagcaacgactattt 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 agaaacccgtgtacaaaatggaggaagtcattcttagtttgaagacagcaacgactattt 517 Query: 392 tccataaaacgtgcttacgttgcaaggactgtggcaaacaccttaa 437 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 518 tccataaaacgtgcttacgttgcaaggactgtggcaaacaccttaa 563 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,649 Number of Sequences: 18737 Number of extensions: 12649 Number of successful extensions: 250 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 243 Number of HSP's gapped (non-prelim): 5 length of query: 658 length of database: 41,270,998 effective HSP length: 17 effective length of query: 641 effective length of database: 40,952,469 effective search space: 26250532629 effective search space used: 26250532629 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI584658 BI584658|BI584658 RH23912.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH23912 5, mRNA sequence. (484 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8082 Number of Sequences: 18737 Number of extensions: 8082 Number of successful extensions: 160 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 160 Number of HSP's gapped (non-prelim): 0 length of query: 484 length of database: 41,270,998 effective HSP length: 17 effective length of query: 467 effective length of database: 40,952,469 effective search space: 19124803023 effective search space used: 19124803023 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI586022 BI586022|BI586022 RH25742.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH25742 5, mRNA sequence. (588 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,985 Number of Sequences: 18737 Number of extensions: 13985 Number of successful extensions: 293 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 293 Number of HSP's gapped (non-prelim): 0 length of query: 588 length of database: 41,270,998 effective HSP length: 17 effective length of query: 571 effective length of database: 40,952,469 effective search space: 23383859799 effective search space used: 23383859799 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI586470 BI586470|BI586470 RH26422.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH26422 5 similar to CG7418: FBan0007418 GO:[] located on: X 18A4-18A4;: 08/18/2001, mRNA sequence. (632 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33254-RA feature: mRNA loc=X:complement(18799219..18799871);ID... 1053 0.0 >CG33254-RA feature: mRNA loc=X:complement(18799219..18799871);ID=FBan0033254;gene _id=FBgn0053254;gene_sym=CG33254;sym=CG33254;scaffold=AE 003511;len=653 Length = 653 Score = 1053 bits (531), Expect = 0.0 Identities = 531/531 (100%) Strand = Plus / Plus Query: 4 atagtgcaaaaagctctactcgcgttcacttcgcatccgctcgccgcattcccgtccgca 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23 atagtgcaaaaagctctactcgcgttcacttcgcatccgctcgccgcattcccgtccgca 82 Query: 64 cccggagtagtgtccagtcactcgtcactcgtcccgatttcccgcaagagagcaagcaac 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83 cccggagtagtgtccagtcactcgtcactcgtcccgatttcccgcaagagagcaagcaac 142 Query: 124 agcatgtggtcgaaaattgccatcgccggagccctgctcgtgatgggtggcgtcctgtcc 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143 agcatgtggtcgaaaattgccatcgccggagccctgctcgtgatgggtggcgtcctgtcc 202 Query: 184 tccagcgtggtggacaacttcgcctacgtggatcgctcgctgccggtggccatgcccaag 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 203 tccagcgtggtggacaacttcgcctacgtggatcgctcgctgccggtggccatgcccaag 262 Query: 244 gcaaaggccttccaagtgaaacaggagtgaggatcccaggaggagggggttttctcaagt 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 263 gcaaaggccttccaagtgaaacaggagtgaggatcccaggaggagggggttttctcaagt 322 Query: 304 ggatcccgactggctgtgtcgattaggcagttcctggagcaggaaccccgtgctcttcac 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 323 ggatcccgactggctgtgtcgattaggcagttcctggagcaggaaccccgtgctcttcac 382 Query: 364 tcggcagctgggatatctactggccagccggctactctggcttgtgtttgagctacaagt 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 383 tcggcagctgggatatctactggccagccggctactctggcttgtgtttgagctacaagt 442 Query: 424 tgaccacaagtgggaaatagttggtgcaggtcatcaagtcgatgcacccgctgggaagcc 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 443 tgaccacaagtgggaaatagttggtgcaggtcatcaagtcgatgcacccgctgggaagcc 502 Query: 484 acctccttgcccataggaacaattcgagcactaaactttaatttagatata 534 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 acctccttgcccataggaacaattcgagcactaaactttaatttagatata 553 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,557 Number of Sequences: 18737 Number of extensions: 14557 Number of successful extensions: 339 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 337 Number of HSP's gapped (non-prelim): 2 length of query: 632 length of database: 41,270,998 effective HSP length: 17 effective length of query: 615 effective length of database: 40,952,469 effective search space: 25185768435 effective search space used: 25185768435 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI588669 BI588669|BI588669 RH30067.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH30067 5, mRNA sequence. (582 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,794 Number of Sequences: 18737 Number of extensions: 16794 Number of successful extensions: 251 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 0 length of query: 582 length of database: 41,270,998 effective HSP length: 17 effective length of query: 565 effective length of database: 40,952,469 effective search space: 23138144985 effective search space used: 23138144985 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI593368 BI593368|BI593368 RH11383.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH11383 5, mRNA sequence. (548 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15295-RA feature: mRNA loc=X:complement(10356715..10358869,103... 1011 0.0 >CG15295-RA feature: mRNA loc=X:complement(10356715..10358869, 10358993..10359125);ID=FBan0015295;gene_id=FBgn0030220;ge ne_sym=CG15295;sym=CG15295;scaffold=AE003451;len=2288 Length = 2288 Score = 1011 bits (510), Expect = 0.0 Identities = 510/510 (100%) Strand = Plus / Plus Query: 8 gagaagtgggagcacatgcgcacgcggctgcagttcaagaacgatgtggagttcgttgcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1768 gagaagtgggagcacatgcgcacgcggctgcagttcaagaacgatgtggagttcgttgcc 1827 Query: 68 taccttttgaacctggcggataacgatacggatcgactgaacaagtgagtattgatttgc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1828 taccttttgaacctggcggataacgatacggatcgactgaacaagtgagtattgatttgc 1887 Query: 128 ttaaaataaattcatttgcattgattgggatgtgccccatatatcaggttatttgtcccc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1888 ttaaaataaattcatttgcattgattgggatgtgccccatatatcaggttatttgtcccc 1947 Query: 188 cttttaaaatcttaaaataattggtaaataatgctttgcatatgcaacaggtatttagaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1948 cttttaaaatcttaaaataattggtaaataatgctttgcatatgcaacaggtatttagaa 2007 Query: 248 gtttgcttagctaccaacaacgcgcaattgaaaagttttaagtgattacacatagttaac 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2008 gtttgcttagctaccaacaacgcgcaattgaaaagttttaagtgattacacatagttaac 2067 Query: 308 acattataataatgatcatacggcagcggaaagcaggaacttataatcattcttatatat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2068 acattataataatgatcatacggcagcggaaagcaggaacttataatcattcttatatat 2127 Query: 368 tttctctcactttaaaatagaaaattatagtttaaatctataaatatattgaatctgcta 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2128 tttctctcactttaaaatagaaaattatagtttaaatctataaatatattgaatctgcta 2187 Query: 428 tggcacgatcccaatcacattaagattccattagaataatactagtaatgaacaaatgcc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2188 tggcacgatcccaatcacattaagattccattagaataatactagtaatgaacaaatgcc 2247 Query: 488 aaattatacaagttttagtgggaatgtggt 517 |||||||||||||||||||||||||||||| Sbjct: 2248 aaattatacaagttttagtgggaatgtggt 2277 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,975 Number of Sequences: 18737 Number of extensions: 12975 Number of successful extensions: 309 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 308 Number of HSP's gapped (non-prelim): 1 length of query: 548 length of database: 41,270,998 effective HSP length: 17 effective length of query: 531 effective length of database: 40,952,469 effective search space: 21745761039 effective search space used: 21745761039 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI608192 BI608192|BI608192 RH12372.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH12372 5, mRNA sequence. (668 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,286 Number of Sequences: 18737 Number of extensions: 21286 Number of successful extensions: 578 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 578 Number of HSP's gapped (non-prelim): 0 length of query: 668 length of database: 41,270,998 effective HSP length: 17 effective length of query: 651 effective length of database: 40,952,469 effective search space: 26660057319 effective search space used: 26660057319 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI611485 BI611485|BI611485 RH17774.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH17774 5, mRNA sequence. (618 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,455 Number of Sequences: 18737 Number of extensions: 14455 Number of successful extensions: 361 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 361 Number of HSP's gapped (non-prelim): 0 length of query: 618 length of database: 41,270,998 effective HSP length: 17 effective length of query: 601 effective length of database: 40,952,469 effective search space: 24612433869 effective search space used: 24612433869 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI612087 BI612087|BI612087 RH40482.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH40482 5, mRNA sequence. (512 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,689 Number of Sequences: 18737 Number of extensions: 10689 Number of successful extensions: 254 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 254 Number of HSP's gapped (non-prelim): 0 length of query: 512 length of database: 41,270,998 effective HSP length: 17 effective length of query: 495 effective length of database: 40,952,469 effective search space: 20271472155 effective search space used: 20271472155 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI613609 BI613609|BI613609 RH42808.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH42808 5, mRNA sequence. (614 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,176 Number of Sequences: 18737 Number of extensions: 23176 Number of successful extensions: 795 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 795 Number of HSP's gapped (non-prelim): 0 length of query: 614 length of database: 41,270,998 effective HSP length: 17 effective length of query: 597 effective length of database: 40,952,469 effective search space: 24448623993 effective search space used: 24448623993 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI614591 BI614591|BI614591 RH44003.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH44003 5, mRNA sequence. (659 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,577 Number of Sequences: 18737 Number of extensions: 12577 Number of successful extensions: 245 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 245 Number of HSP's gapped (non-prelim): 0 length of query: 659 length of database: 41,270,998 effective HSP length: 17 effective length of query: 642 effective length of database: 40,952,469 effective search space: 26291485098 effective search space used: 26291485098 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI614716 BI614716|BI614716 RH44168.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH44168 5, mRNA sequence. (594 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,127 Number of Sequences: 18737 Number of extensions: 14127 Number of successful extensions: 399 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 399 Number of HSP's gapped (non-prelim): 0 length of query: 594 length of database: 41,270,998 effective HSP length: 17 effective length of query: 577 effective length of database: 40,952,469 effective search space: 23629574613 effective search space used: 23629574613 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI615858 BI615858|BI615858 RH45738.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH45738 5 similar to CG12158: FBan0012158 GO:[] located on: 2R 45D1-45D1;: 08/18/2001, mRNA sequence. (294 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG12158-RA feature: mRNA loc=2R:complement(4423203..4423413,4423... 541 e-153 >CG12158-RA feature: mRNA loc=2R:complement(4423203..4423413, 4423468..4423538);ID=FBan0012158;gene_id=FBgn0040775;gen e_sym=CG12158;sym=CG12158;scaffold=AE003833;len=282 Length = 282 Score = 541 bits (273), Expect = e-153 Identities = 276/277 (99%) Strand = Plus / Plus Query: 4 agtttcaaattcaacatgaagcagttcgcattgttcagcatcttccttctaattctggct 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 agtttcaaattcaacatgaagcagttcgcattgttcagcatcttccttctaattctggct 62 Query: 64 gtgggtttggcacaaatgccgctgcaggtggccgcccagggccaaaatggacattcgcag 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 gtgggtttggcacaaatgccgctgcaggtggccgcccagggccaaaatggacattcgcag 122 Query: 124 ggacagccgccaagaccgccaaatggcaatggaaacggcaaccagcagagtggacaagga 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 ggacagccgccaagaccgccaaatggcaatggaaacggcaaccagcagagtggacaagga 182 Query: 184 caaagcgggcagaacaactagaactgggatatttctggagggggacacacacctcctcgc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 caaagcgggcagaacaactagaactgggatatttctggagggggacacacacctcctcgc 242 Query: 244 cacttccccagttacttaaataaacactttccccagc 280 ||||| ||||||||||||||||||||||||||||||| Sbjct: 243 cactttcccagttacttaaataaacactttccccagc 279 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8520 Number of Sequences: 18737 Number of extensions: 8520 Number of successful extensions: 793 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 792 Number of HSP's gapped (non-prelim): 1 length of query: 294 length of database: 41,270,998 effective HSP length: 16 effective length of query: 278 effective length of database: 40,971,206 effective search space: 11389995268 effective search space used: 11389995268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI616207 BI616207|BI616207 RH46096.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH46096 5, mRNA sequence. (680 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,574 Number of Sequences: 18737 Number of extensions: 16574 Number of successful extensions: 505 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 505 Number of HSP's gapped (non-prelim): 0 length of query: 680 length of database: 41,270,998 effective HSP length: 17 effective length of query: 663 effective length of database: 40,952,469 effective search space: 27151486947 effective search space used: 27151486947 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI616357 BI616357|BI616357 RH46282.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH46282 5, mRNA sequence. (560 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390... 1094 0.0 >CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7390524..7390851, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1042 Length = 1042 Score = 1094 bits (552), Expect = 0.0 Identities = 557/559 (99%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctggttctgccctcaaacaacatatgtatatatggaatgctgcaccgagata 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctggttctgccctcaaacaacatatgtatatatggaatgctgcaccgagata 180 Query: 182 aggtggtgctttgccagatctatatttaaatgcatggaggggcttgccaattgataagag 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aggtggtgctttgccagatctatatttaaatgcatggaggggcttgccaattgataagag 240 Query: 242 cggagatgaggatgagggaggagacgacggcccgcattgttcgttaaccttgagcacgac 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cggagatgaggatgagggaggagacgacggcccgcattgttcgttaaccttgagcacgac 300 Query: 302 ttttgacgttacagcggaacggaatctgcagggaacttcatggctcggctttattatttt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttttgacgttacagcggaacggaatctgcagggaacttcatggctcggctttattatttt 360 Query: 362 taattaaatatgatatgatttgcattgtgagcgctttggggtccacaactttgttgggct 421 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 361 taattaaatatgatatgatttgcattgtgagcgctttggggtccccaactttgttgggct 420 Query: 422 aattcaattatgtgcagtctgccccatcattcatctttcggcgtcggtctggtgacgcgc 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aattcaattatgtgcagtctgccccatcattcatctttcggcgtcggtctggtgacgcgc 480 Query: 482 aagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatacctacacc 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 aagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatacctacacc 540 Query: 542 ctgactaccacctncacct 560 ||||||||||||| ||||| Sbjct: 541 ctgactaccacctccacct 559 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,075 Number of Sequences: 18737 Number of extensions: 14075 Number of successful extensions: 395 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 394 Number of HSP's gapped (non-prelim): 1 length of query: 560 length of database: 41,270,998 effective HSP length: 17 effective length of query: 543 effective length of database: 40,952,469 effective search space: 22237190667 effective search space used: 22237190667 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI617111 BI617111|BI617111 RH47344.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH47344 5, mRNA sequence. (568 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,591 Number of Sequences: 18737 Number of extensions: 14591 Number of successful extensions: 296 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 296 Number of HSP's gapped (non-prelim): 0 length of query: 568 length of database: 41,270,998 effective HSP length: 17 effective length of query: 551 effective length of database: 40,952,469 effective search space: 22564810419 effective search space used: 22564810419 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI618223 BI618223|BI618223 RH48823.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH48823 5 similar to par-1: FBan0008201 GO:[protein phosphorylation (GO:0006468); protein serine/threonine kinase (GO:0004674); protein serine/threonine kinase (GO:0004674); protein phosphorylation (GO:0006468); protein phosphorylation (GO:0006468); prote, mRNA sequence. (556 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value par-1-RD feature: mRNA loc=2R:join(14526704..14526819,14532510..... 1057 0.0 par-1-RC feature: mRNA loc=2R:join(14531234..14531361,14532510..... 1057 0.0 par-1-RB feature: mRNA loc=2R:join(14519894..14520695,14523515..... 852 0.0 par-1-RA feature: mRNA loc=2R:join(14519894..14520695,14523515..... 850 0.0 par-1-RG feature: mRNA loc=2R:join(14531234..14531361,14532510..... 807 0.0 par-1-RE feature: mRNA loc=2R:join(14526704..14526819,14532510..... 807 0.0 par-1-RO feature: mRNA loc=2R:join(14526254..14526363,14528030..... 805 0.0 par-1-RJ feature: mRNA loc=2R:join(14526256..14526499,14528030..... 805 0.0 par-1-RI feature: mRNA loc=2R:join(14526167..14526208,14528062..... 805 0.0 par-1-RH feature: mRNA loc=2R:join(14526167..14526208,14528030..... 805 0.0 par-1-RF feature: mRNA loc=2R:join(14526704..14526819,14532510..... 805 0.0 >par-1-RD feature: mRNA loc=2R:join(14526704..14526819,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5359 Length = 5359 Score = 1057 bits (533), Expect = 0.0 Identities = 533/533 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2867 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2926 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2927 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2986 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2987 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3046 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3047 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3106 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3107 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3166 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3167 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3226 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaaatggcatcggctg 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3227 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaaatggcatcggctg 3286 Query: 444 ttaaatcaagcagacactttccaaggaatgttccatcacgttcaacctttcactctggtc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3287 ttaaatcaagcagacactttccaaggaatgttccatcacgttcaacctttcactctggtc 3346 Query: 504 aaaccagagcacgaaacaacacagcgctggaatactcgggcaccagcggtgcc 556 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3347 aaaccagagcacgaaacaacacagcgctggaatactcgggcaccagcggtgcc 3399 >par-1-RC feature: mRNA loc=2R:join(14531234..14531361,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5371 Length = 5371 Score = 1057 bits (533), Expect = 0.0 Identities = 533/533 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2879 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2938 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2939 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2998 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2999 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3058 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3059 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3118 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3119 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3178 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3179 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3238 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaaatggcatcggctg 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3239 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaaatggcatcggctg 3298 Query: 444 ttaaatcaagcagacactttccaaggaatgttccatcacgttcaacctttcactctggtc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3299 ttaaatcaagcagacactttccaaggaatgttccatcacgttcaacctttcactctggtc 3358 Query: 504 aaaccagagcacgaaacaacacagcgctggaatactcgggcaccagcggtgcc 556 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3359 aaaccagagcacgaaacaacacagcgctggaatactcgggcaccagcggtgcc 3411 >par-1-RB feature: mRNA loc=2R:join(14519894..14520695,14523515..14524336, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536884, 14537160..14537274,14537333..14537460,14537525..14537687, 14542472..14542585,14546672..14546821,14546888..14547006, 14547069..14548194);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=4725 Length = 4725 Score = 852 bits (430), Expect = 0.0 Identities = 430/430 (100%) Strand = Plus / Plus Query: 1 gccaagtcgccgagcctcgtctggtgttggaccgacaaatgcggcagcaacagttgcggc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2788 gccaagtcgccgagcctcgtctggtgttggaccgacaaatgcggcagcaacagttgcggc 2847 Query: 61 ggccacgggagccgttggtgcggttaatccaagcaataactacaatgctgcaggatcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2848 ggccacgggagccgttggtgcggttaatccaagcaataactacaatgctgcaggatcagc 2907 Query: 121 ggcggatcgagcatcagttggcagcaactttaagcgacagaacacaatcgactcggctac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2908 ggcggatcgagcatcagttggcagcaactttaagcgacagaacacaatcgactcggctac 2967 Query: 181 gattaaggagaacacagcgcgactggccgctcaaaatcagagacccgcttcggccacaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2968 gattaaggagaacacagcgcgactggccgctcaaaatcagagacccgcttcggccacaca 3027 Query: 241 aaagatgctcaccacggcagacaccacactgaacagtcccgccaagccgcgaacggcaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3028 aaagatgctcaccacggcagacaccacactgaacagtcccgccaagccgcgaacggcaac 3087 Query: 301 gaagtacgatccgacgaatggcaatcgcacggtcagcggcacaagtggcatcattccacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3088 gaagtacgatccgacgaatggcaatcgcacggtcagcggcacaagtggcatcattccacg 3147 Query: 361 tcgctccaccacgctttatgaaaagacttcgtcgacggagaaaaccaacgttattcctgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3148 tcgctccaccacgctttatgaaaagacttcgtcgacggagaaaaccaacgttattcctgc 3207 Query: 421 agagacaaaa 430 |||||||||| Sbjct: 3208 agagacaaaa 3217 >par-1-RA feature: mRNA loc=2R:join(14519894..14520695,14523515..14524336, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536884, 14537160..14537274,14537333..14537460,14537525..14537687, 14541336..14541424,14542462..14542585,14546672..14546821, 14546888..14547006, 14547069..14548194);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=4824 Length = 4824 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Plus Query: 1 gccaagtcgccgagcctcgtctggtgttggaccgacaaatgcggcagcaacagttgcggc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2788 gccaagtcgccgagcctcgtctggtgttggaccgacaaatgcggcagcaacagttgcggc 2847 Query: 61 ggccacgggagccgttggtgcggttaatccaagcaataactacaatgctgcaggatcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2848 ggccacgggagccgttggtgcggttaatccaagcaataactacaatgctgcaggatcagc 2907 Query: 121 ggcggatcgagcatcagttggcagcaactttaagcgacagaacacaatcgactcggctac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2908 ggcggatcgagcatcagttggcagcaactttaagcgacagaacacaatcgactcggctac 2967 Query: 181 gattaaggagaacacagcgcgactggccgctcaaaatcagagacccgcttcggccacaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2968 gattaaggagaacacagcgcgactggccgctcaaaatcagagacccgcttcggccacaca 3027 Query: 241 aaagatgctcaccacggcagacaccacactgaacagtcccgccaagccgcgaacggcaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3028 aaagatgctcaccacggcagacaccacactgaacagtcccgccaagccgcgaacggcaac 3087 Query: 301 gaagtacgatccgacgaatggcaatcgcacggtcagcggcacaagtggcatcattccacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3088 gaagtacgatccgacgaatggcaatcgcacggtcagcggcacaagtggcatcattccacg 3147 Query: 361 tcgctccaccacgctttatgaaaagacttcgtcgacggagaaaaccaacgttattcctgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3148 tcgctccaccacgctttatgaaaagacttcgtcgacggagaaaaccaacgttattcctgc 3207 Query: 421 agagacaaa 429 ||||||||| Sbjct: 3208 agagacaaa 3216 >par-1-RG feature: mRNA loc=2R:join(14531234..14531361,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14542472..14542585,14546672..14546821,14546888..14547006, 14547069..14548194);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=4793 Length = 4793 Score = 807 bits (407), Expect = 0.0 Identities = 407/407 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2879 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2938 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2939 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2998 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2999 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3058 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3059 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3118 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3119 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3178 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3179 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3238 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaa 430 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3239 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaa 3285 >par-1-RE feature: mRNA loc=2R:join(14526704..14526819,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14542472..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5278 Length = 5278 Score = 807 bits (407), Expect = 0.0 Identities = 407/407 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2867 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2926 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2927 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2986 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2987 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3046 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3047 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3106 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3107 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3166 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3167 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3226 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaa 430 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3227 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaa 3273 >par-1-RO feature: mRNA loc=2R:join(14526254..14526363,14528030..14529414, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5303 Length = 5303 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2697 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2756 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2757 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2816 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2817 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 2876 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2877 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 2936 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2937 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 2996 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2997 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3056 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3057 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3102 >par-1-RJ feature: mRNA loc=2R:join(14526256..14526499,14528030..14529414, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5437 Length = 5437 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2831 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2890 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2891 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2950 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2951 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3010 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3011 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3070 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3071 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3130 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3131 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3190 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3191 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3236 >par-1-RI feature: mRNA loc=2R:join(14526167..14526208,14528062..14529414, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5203 Length = 5203 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2597 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2656 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2657 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2716 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2717 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 2776 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2777 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 2836 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2837 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 2896 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2897 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 2956 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2957 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3002 >par-1-RH feature: mRNA loc=2R:join(14526167..14526208,14528030..14529414, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5235 Length = 5235 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2629 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2688 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2689 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2748 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2749 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 2808 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2809 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 2868 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2869 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 2928 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2929 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 2988 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2989 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3034 >par-1-RF feature: mRNA loc=2R:join(14526704..14526819,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5473 Length = 5473 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2867 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2926 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2927 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2986 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2987 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3046 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3047 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3106 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3107 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3166 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3167 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3226 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3227 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3272 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,812 Number of Sequences: 18737 Number of extensions: 12812 Number of successful extensions: 374 Number of sequences better than 1.0e-100: 11 Number of HSP's better than 0.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 345 Number of HSP's gapped (non-prelim): 29 length of query: 556 length of database: 41,270,998 effective HSP length: 17 effective length of query: 539 effective length of database: 40,952,469 effective search space: 22073380791 effective search space used: 22073380791 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI618367 BI618367|BI618367 RH49003.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH49003 5 similar to CG6783: FBan0006783 GO:[ligand binding or carrier (GO:0005488)] located on: 3R 86E13-86E14;: 08/19/2001, mRNA sequence. (341 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386... 620 e-177 CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390... 620 e-177 CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386... 620 e-177 CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390... 369 e-101 >CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 620 bits (313), Expect = e-177 Identities = 333/340 (97%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagcccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcacgatgggcaacagcctgagccccacag 181 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcaccttcaagctgggcgttgagtttgatgaggagaccctggacggtcgcaacg 301 ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 ccaagagcatcatcaccctggatggnaacaagctgacgca 341 |||||||||||||||||||||||| |||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgca 340 >CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=714 Length = 714 Score = 620 bits (313), Expect = e-177 Identities = 333/340 (97%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagcccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcacgatgggcaacagcctgagccccacag 181 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcaccttcaagctgggcgttgagtttgatgaggagaccctggacggtcgcaacg 301 ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 ccaagagcatcatcaccctggatggnaacaagctgacgca 341 |||||||||||||||||||||||| |||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgca 340 >CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 620 bits (313), Expect = e-177 Identities = 333/340 (97%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagcccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcacgatgggcaacagcctgagccccacag 181 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcaccttcaagctgggcgttgagtttgatgaggagaccctggacggtcgcaacg 301 ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 ccaagagcatcatcaccctggatggnaacaagctgacgca 341 |||||||||||||||||||||||| |||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgca 340 >CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7390524..7390851, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1042 Length = 1042 Score = 369 bits (186), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 133 ggcgtcggtctggtgacgcgcacgatgggcaacagcctgagccccacagtggaggtgacc 192 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 460 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 519 Query: 193 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcacc 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 520 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 579 Query: 253 ttcaagctgggcgttgagtttgatgaggagaccctggacggtcgcaacgccaagagcatc 312 |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| Sbjct: 580 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 639 Query: 313 atcaccctggatggnaacaagctgacgca 341 |||||||||||||| |||||||||||||| Sbjct: 640 atcaccctggatggcaacaagctgacgca 668 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9024 Number of Sequences: 18737 Number of extensions: 9024 Number of successful extensions: 749 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 744 Number of HSP's gapped (non-prelim): 5 length of query: 341 length of database: 41,270,998 effective HSP length: 16 effective length of query: 325 effective length of database: 40,971,206 effective search space: 13315641950 effective search space used: 13315641950 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI622329 BI622329|BI622329 RH54175.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH54175 5, mRNA sequence. (483 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7760 Number of Sequences: 18737 Number of extensions: 7760 Number of successful extensions: 166 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166 Number of HSP's gapped (non-prelim): 0 length of query: 483 length of database: 41,270,998 effective HSP length: 17 effective length of query: 466 effective length of database: 40,952,469 effective search space: 19083850554 effective search space used: 19083850554 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI624022 BI624022|BI624022 RH56396.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH56396 5, mRNA sequence. (666 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,800 Number of Sequences: 18737 Number of extensions: 14800 Number of successful extensions: 435 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 435 Number of HSP's gapped (non-prelim): 0 length of query: 666 length of database: 41,270,998 effective HSP length: 17 effective length of query: 649 effective length of database: 40,952,469 effective search space: 26578152381 effective search space used: 26578152381 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI627214 BI627214|BI627214 RH68460.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH68460 5 similar to CG11315: FBan0011315 GO:[] located on: 3R 100A5-100A5;: 08/24/2001, mRNA sequence. (638 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11315-RB feature: mRNA loc=3R:complement(26560567..26560959,26... 1233 0.0 CG11315-RA feature: mRNA loc=3R:complement(26560567..26561376);I... 664 0.0 >CG11315-RB feature: mRNA loc=3R:complement(26560567..26560959, 26561041..26561376);ID=FBan0011315;gene_id=FBgn0039801;g ene_sym=CG11315;sym=CG11315;scaffold=AE003775;len=729 Length = 729 Score = 1233 bits (622), Expect = 0.0 Identities = 637/642 (99%), Gaps = 5/642 (0%) Strand = Plus / Plus Query: 2 gcattccgcgtccgactttcgatccatcatgttgcgtctgagttcgctcctgcctgtcgc 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcattccgcgtccgactttcgatccatcatgttgcgtctgagttcgctcctgcctgtcgc 60 Query: 62 ctttgctctggtgttgtcatccgtctccgctgagatagtcaactttcagacttgcgaaga 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctttgctctggtgttgtcatccgtctccgctgagatagtcaactttcagacttgcgaaga 120 Query: 122 tagtgtggactcctgctcgattagtcaggtgcgggtgacgccctgtccggaagccaatgc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tagtgtggactcctgctcgattagtcaggtgcgggtgacgccctgtccggaagccaatgc 180 Query: 182 caatgccgcatgccacattcgccggaggcaccgcttcacgatgagcttcgactttacgcc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caatgccgcatgccacattcgccggaggcaccgcttcacgatgagcttcgactttacgcc 240 Query: 242 ccacttcgatgcggacaccctggtggccagcttgggctgggccaagagcgagaacgtgga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ccacttcgatgcggacaccctggtggccagcttgggctgggccaagagcgagaacgtgga 300 Query: 302 gctgcccctgcttaccatggaccaggaggcctg-----catacaccatccgttgggccct 356 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 301 gctgcccctgcttaccatggaccaggaggcctgcaatccatacaccatccgttgggccct 360 Query: 357 gaaggatccggtttcccagaaacgttgctgcttcaccatcgacatcaaggtggtgcgcta 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gaaggatccggtttcccagaaacgttgctgcttcaccatcgacatcaaggtggtgcgcta 420 Query: 417 gcaaggtgcactccgtaatggatgctccacttaatatttggattaatatatatcttaaat 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gcaaggtgcactccgtaatggatgctccacttaatatttggattaatatatatcttaaat 480 Query: 477 atcttcgaaattaaagtgatttacaagtgggtcgatacgatagtttggtttggtgtaatt 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 atcttcgaaattaaagtgatttacaagtgggtcgatacgatagtttggtttggtgtaatt 540 Query: 537 agcggcacctgtttataatctgtatacccagtaattggactcatttcaccttgaatatgt 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agcggcacctgtttataatctgtatacccagtaattggactcatttcaccttgaatatgt 600 Query: 597 cagcagaacaaggaatgctgctgatatgagtgccaattaaca 638 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 cagcagaacaaggaatgctgctgatatgagtgccaattaaca 642 >CG11315-RA feature: mRNA loc=3R:complement(26560567..26561376);ID=FBan0011315;gen e_id=FBgn0039801;gene_sym=CG11315;sym=CG11315;scaffold=A E003775;len=810 Length = 810 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Plus Query: 2 gcattccgcgtccgactttcgatccatcatgttgcgtctgagttcgctcctgcctgtcgc 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcattccgcgtccgactttcgatccatcatgttgcgtctgagttcgctcctgcctgtcgc 60 Query: 62 ctttgctctggtgttgtcatccgtctccgctgagatagtcaactttcagacttgcgaaga 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctttgctctggtgttgtcatccgtctccgctgagatagtcaactttcagacttgcgaaga 120 Query: 122 tagtgtggactcctgctcgattagtcaggtgcgggtgacgccctgtccggaagccaatgc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tagtgtggactcctgctcgattagtcaggtgcgggtgacgccctgtccggaagccaatgc 180 Query: 182 caatgccgcatgccacattcgccggaggcaccgcttcacgatgagcttcgactttacgcc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caatgccgcatgccacattcgccggaggcaccgcttcacgatgagcttcgactttacgcc 240 Query: 242 ccacttcgatgcggacaccctggtggccagcttgggctgggccaagagcgagaacgtgga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ccacttcgatgcggacaccctggtggccagcttgggctgggccaagagcgagaacgtgga 300 Query: 302 gctgcccctgcttaccatggaccaggaggcctgca 336 ||||||||||||||||||||||||||||||||||| Sbjct: 301 gctgcccctgcttaccatggaccaggaggcctgca 335 Score = 603 bits (304), Expect = e-172 Identities = 304/304 (100%) Strand = Plus / Plus Query: 335 catacaccatccgttgggccctgaaggatccggtttcccagaaacgttgctgcttcacca 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 catacaccatccgttgggccctgaaggatccggtttcccagaaacgttgctgcttcacca 479 Query: 395 tcgacatcaaggtggtgcgctagcaaggtgcactccgtaatggatgctccacttaatatt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 tcgacatcaaggtggtgcgctagcaaggtgcactccgtaatggatgctccacttaatatt 539 Query: 455 tggattaatatatatcttaaatatcttcgaaattaaagtgatttacaagtgggtcgatac 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 tggattaatatatatcttaaatatcttcgaaattaaagtgatttacaagtgggtcgatac 599 Query: 515 gatagtttggtttggtgtaattagcggcacctgtttataatctgtatacccagtaattgg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 gatagtttggtttggtgtaattagcggcacctgtttataatctgtatacccagtaattgg 659 Query: 575 actcatttcaccttgaatatgtcagcagaacaaggaatgctgctgatatgagtgccaatt 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 actcatttcaccttgaatatgtcagcagaacaaggaatgctgctgatatgagtgccaatt 719 Query: 635 aaca 638 |||| Sbjct: 720 aaca 723 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,732 Number of Sequences: 18737 Number of extensions: 14732 Number of successful extensions: 361 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 357 Number of HSP's gapped (non-prelim): 3 length of query: 638 length of database: 41,270,998 effective HSP length: 17 effective length of query: 621 effective length of database: 40,952,469 effective search space: 25431483249 effective search space used: 25431483249 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI627335 BI627335|BI627335 RH68619.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH68619 5, mRNA sequence. (569 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9609 Number of Sequences: 18737 Number of extensions: 9609 Number of successful extensions: 186 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 186 Number of HSP's gapped (non-prelim): 0 length of query: 569 length of database: 41,270,998 effective HSP length: 17 effective length of query: 552 effective length of database: 40,952,469 effective search space: 22605762888 effective search space used: 22605762888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI628685 BI628685|BI628685 RH57193.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH57193 5, mRNA sequence. (605 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32212-RA feature: mRNA loc=3L:join(19436833..19436844,19436904... 642 0.0 >CG32212-RA feature: mRNA loc=3L:join(19436833..19436844, 19436904..19437227);ID=FBan0032212;gene_id=FBgn0052212;g ene_sym=CG32212;sym=CG32212;scaffold=AE003516;len=336 Length = 336 Score = 642 bits (324), Expect = 0.0 Identities = 324/324 (100%) Strand = Plus / Minus Query: 44 ttagatgatgacctgcgcagcagcagaggcgcagctgattggagcggagttggccaaacg 103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 336 ttagatgatgacctgcgcagcagcagaggcgcagctgattggagcggagttggccaaacg 277 Query: 104 cgaagggtaggccaaagaagcagcagcgtacttggccaccactggagcagcaacggaagc 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 276 cgaagggtaggccaaagaagcagcagcgtacttggccaccactggagcagcaacggaagc 217 Query: 164 aatctcagaagcagcatcgattccattgttgttcctggcgatactggtggcggtcacagg 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 216 aatctcagaagcagcatcgattccattgttgttcctggcgatactggtggcggtcacagg 157 Query: 224 tggagtgggagcagttaccacggcagcgagagcagagtagtctagaggagcagagtaagc 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 156 tggagtgggagcagttaccacggcagcgagagcagagtagtctagaggagcagagtaagc 97 Query: 284 cagaggaccagtgtacgccagggcagcacccaggagatcgggcttggcagcagcgcaggc 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 cagaggaccagtgtacgccagggcagcacccaggagatcgggcttggcagcagcgcaggc 37 Query: 344 gacggttatcaggacaaggacggc 367 |||||||||||||||||||||||| Sbjct: 36 gacggttatcaggacaaggacggc 13 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,433 Number of Sequences: 18737 Number of extensions: 18433 Number of successful extensions: 453 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 452 Number of HSP's gapped (non-prelim): 1 length of query: 605 length of database: 41,270,998 effective HSP length: 17 effective length of query: 588 effective length of database: 40,952,469 effective search space: 24080051772 effective search space used: 24080051772 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI630224 BI630224|BI630224 RH59222.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH59222 5, mRNA sequence. (691 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,654 Number of Sequences: 18737 Number of extensions: 12654 Number of successful extensions: 268 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 268 Number of HSP's gapped (non-prelim): 0 length of query: 691 length of database: 41,270,998 effective HSP length: 17 effective length of query: 674 effective length of database: 40,952,469 effective search space: 27601964106 effective search space used: 27601964106 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI631646 BI631646|BI631646 RH61266.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH61266 5, mRNA sequence. (587 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,025 Number of Sequences: 18737 Number of extensions: 12025 Number of successful extensions: 273 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 273 Number of HSP's gapped (non-prelim): 0 length of query: 587 length of database: 41,270,998 effective HSP length: 17 effective length of query: 570 effective length of database: 40,952,469 effective search space: 23342907330 effective search space used: 23342907330 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI632250 BI632250|BI632250 SD25955.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD25955 5, mRNA sequence. (545 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9509 Number of Sequences: 18737 Number of extensions: 9509 Number of successful extensions: 192 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 192 Number of HSP's gapped (non-prelim): 0 length of query: 545 length of database: 41,270,998 effective HSP length: 17 effective length of query: 528 effective length of database: 40,952,469 effective search space: 21622903632 effective search space used: 21622903632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI633144 BI633144|BI633144 SD27140.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD27140 5, mRNA sequence. (639 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,264 Number of Sequences: 18737 Number of extensions: 12264 Number of successful extensions: 263 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 263 Number of HSP's gapped (non-prelim): 0 length of query: 639 length of database: 41,270,998 effective HSP length: 17 effective length of query: 622 effective length of database: 40,952,469 effective search space: 25472435718 effective search space used: 25472435718 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI635318 BI635318|BI635318 SD16627.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD16627 5, mRNA sequence. (611 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10737-RD feature: mRNA loc=2R:join(14227867..14227895,14234338... 753 0.0 CG10737-RC feature: mRNA loc=2R:join(14233976..14234126,14234338... 753 0.0 CG10737-RB feature: mRNA loc=2R:join(14227867..14227895,14228884... 432 e-120 CG10737-RA feature: mRNA loc=2R:join(14227867..14227895,14228884... 432 e-120 >CG10737-RD feature: mRNA loc=2R:join(14227867..14227895,14234338..14234881, 14234973..14235095,14235899..14236000,14236065..14236244, 14236432..14236608,14237152..14237363,14237424..14237841, 14238059..14238085,14238297..14238503,14238602..14239028, 14239908..14240067,14240136..14240243,14240308..14240463, 14240661..14240804);ID=FBan0010737;gene_id=FBgn0034420;ge ne_sym=CG10737;sym=CG10737;scaffold=AE003797;len=3014 Length = 3014 Score = 753 bits (380), Expect = 0.0 Identities = 388/391 (99%) Strand = Plus / Minus Query: 221 ccattgagggttccggtggctgttcgagggaatccggtggctgttgttgtattcgagttg 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2387 ccattgagggttccggtggctgttcgagggaatccggtggctgttgttgtattcgagttg 2328 Query: 281 gtggctgatagtgacttatgactgttattattaggttgatcggccgagagggtgcgtgtc 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2327 gtggctgatagtgacttatgactgttattattaggttgatcggccgagagggtgcgtgtc 2268 Query: 341 ttggagcggctgagccgcttcttcagggtgccaaagaaattacgttttttgctgcgcccg 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2267 ttggagcggctgagccgcttcttcagggtgccaaagaaattacgttttttgctgcgcccg 2208 Query: 401 cgatcatcgaccacgtcatggccctccaataatccggattgctgagccagctgctgggca 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2207 cgatcatcgaccacgtcatggccctccaataatccggattgctgagccagctgctgggca 2148 Query: 461 ccaccgtttcgtggcagactgttatatccgcccgaaccggcgccattcgagttaccattg 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2147 ccaccgtttcgtggcagactgttatatccgcccgaaccggcgccattcgagttaccattg 2088 Query: 521 ccattgaggctgtagttgttgtggtaactactgccattgggcgatgaggcggcattgggc 580 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2087 ccattgaggctatagttgttgtggtaactactgccattgggcgatgaggcggcattgggc 2028 Query: 581 ttgccaaactcagcggtgctttcctcgntga 611 | ||||||||||||||||||||||||| ||| Sbjct: 2027 tggccaaactcagcggtgctttcctcgttga 1997 Score = 434 bits (219), Expect = e-121 Identities = 222/223 (99%) Strand = Plus / Minus Query: 1 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2667 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 2608 Query: 61 tcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2607 gcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 2548 Query: 121 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2547 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 2488 Query: 181 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtcca 223 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2487 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtcca 2445 >CG10737-RC feature: mRNA loc=2R:join(14233976..14234126,14234338..14234881, 14234973..14235095,14235899..14236000,14236065..14236244, 14236432..14236608,14237152..14237363,14237424..14237841, 14238059..14238085,14238297..14238503,14238602..14239028, 14239908..14240067,14240136..14240243,14240308..14240463, 14240661..14240804);ID=FBan0010737;gene_id=FBgn0034420;ge ne_sym=CG10737;sym=CG10737;scaffold=AE003797;len=3136 Length = 3136 Score = 753 bits (380), Expect = 0.0 Identities = 388/391 (99%) Strand = Plus / Minus Query: 221 ccattgagggttccggtggctgttcgagggaatccggtggctgttgttgtattcgagttg 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2509 ccattgagggttccggtggctgttcgagggaatccggtggctgttgttgtattcgagttg 2450 Query: 281 gtggctgatagtgacttatgactgttattattaggttgatcggccgagagggtgcgtgtc 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2449 gtggctgatagtgacttatgactgttattattaggttgatcggccgagagggtgcgtgtc 2390 Query: 341 ttggagcggctgagccgcttcttcagggtgccaaagaaattacgttttttgctgcgcccg 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2389 ttggagcggctgagccgcttcttcagggtgccaaagaaattacgttttttgctgcgcccg 2330 Query: 401 cgatcatcgaccacgtcatggccctccaataatccggattgctgagccagctgctgggca 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2329 cgatcatcgaccacgtcatggccctccaataatccggattgctgagccagctgctgggca 2270 Query: 461 ccaccgtttcgtggcagactgttatatccgcccgaaccggcgccattcgagttaccattg 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2269 ccaccgtttcgtggcagactgttatatccgcccgaaccggcgccattcgagttaccattg 2210 Query: 521 ccattgaggctgtagttgttgtggtaactactgccattgggcgatgaggcggcattgggc 580 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2209 ccattgaggctatagttgttgtggtaactactgccattgggcgatgaggcggcattgggc 2150 Query: 581 ttgccaaactcagcggtgctttcctcgntga 611 | ||||||||||||||||||||||||| ||| Sbjct: 2149 tggccaaactcagcggtgctttcctcgttga 2119 Score = 434 bits (219), Expect = e-121 Identities = 222/223 (99%) Strand = Plus / Minus Query: 1 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2789 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 2730 Query: 61 tcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2729 gcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 2670 Query: 121 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2669 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 2610 Query: 181 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtcca 223 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2609 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtcca 2567 >CG10737-RB feature: mRNA loc=2R:join(14227867..14227895,14228884..14229248, 14234338..14234881,14234973..14235095,14235899..14236000, 14236065..14236244,14236432..14236608,14237152..14237363, 14237424..14237841,14238059..14238085,14238297..14238503, 14238602..14238806,14239908..14240067,14240136..14240243, 14240308..14240463, 14241539..14241943);ID=FBan0010737;gene_id=FBgn0034420;ge ne_sym=CG10737;sym=CG10737;scaffold=AE003797;len=3418 Length = 3418 Score = 432 bits (218), Expect = e-120 Identities = 226/229 (98%) Strand = Plus / Minus Query: 383 cgttttttgctgcgcccgcgatcatcgaccacgtcatggccctccaataatccggattgc 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2590 cgttttttgctgcgcccgcgatcatcgaccacgtcatggccctccaataatccggattgc 2531 Query: 443 tgagccagctgctgggcaccaccgtttcgtggcagactgttatatccgcccgaaccggcg 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 tgagccagctgctgggcaccaccgtttcgtggcagactgttatatccgcccgaaccggcg 2471 Query: 503 ccattcgagttaccattgccattgaggctgtagttgttgtggtaactactgccattgggc 562 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2470 ccattcgagttaccattgccattgaggctatagttgttgtggtaactactgccattgggc 2411 Query: 563 gatgaggcggcattgggcttgccaaactcagcggtgctttcctcgntga 611 ||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 2410 gatgaggcggcattgggctggccaaactcagcggtgctttcctcgttga 2362 Score = 430 bits (217), Expect = e-120 Identities = 220/221 (99%) Strand = Plus / Minus Query: 1 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2810 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 2751 Query: 61 tcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2750 gcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 2691 Query: 121 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2690 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 2631 Query: 181 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtc 221 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2630 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtc 2590 >CG10737-RA feature: mRNA loc=2R:join(14227867..14227895,14228884..14229248, 14234338..14234881,14234973..14235095,14235899..14236000, 14236065..14236244,14236432..14236608,14237152..14237363, 14237424..14237841,14238059..14238085,14238297..14238503, 14238602..14238806,14239908..14240067,14240136..14240243, 14240308..14240463, 14240661..14240804);ID=FBan0010737;gene_id=FBgn0034420;ge ne_sym=CG10737;sym=CG10737;scaffold=AE003797;len=3157 Length = 3157 Score = 432 bits (218), Expect = e-120 Identities = 226/229 (98%) Strand = Plus / Minus Query: 383 cgttttttgctgcgcccgcgatcatcgaccacgtcatggccctccaataatccggattgc 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2590 cgttttttgctgcgcccgcgatcatcgaccacgtcatggccctccaataatccggattgc 2531 Query: 443 tgagccagctgctgggcaccaccgtttcgtggcagactgttatatccgcccgaaccggcg 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 tgagccagctgctgggcaccaccgtttcgtggcagactgttatatccgcccgaaccggcg 2471 Query: 503 ccattcgagttaccattgccattgaggctgtagttgttgtggtaactactgccattgggc 562 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2470 ccattcgagttaccattgccattgaggctatagttgttgtggtaactactgccattgggc 2411 Query: 563 gatgaggcggcattgggcttgccaaactcagcggtgctttcctcgntga 611 ||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 2410 gatgaggcggcattgggctggccaaactcagcggtgctttcctcgttga 2362 Score = 430 bits (217), Expect = e-120 Identities = 220/221 (99%) Strand = Plus / Minus Query: 1 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2810 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 2751 Query: 61 tcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2750 gcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 2691 Query: 121 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2690 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 2631 Query: 181 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtc 221 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2630 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtc 2590 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,570 Number of Sequences: 18737 Number of extensions: 17570 Number of successful extensions: 425 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 417 Number of HSP's gapped (non-prelim): 8 length of query: 611 length of database: 41,270,998 effective HSP length: 17 effective length of query: 594 effective length of database: 40,952,469 effective search space: 24325766586 effective search space used: 24325766586 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI635976 BI635976|BI635976 SD17528.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD17528 5 similar to Glt: FBan0009280 GO:[extracellular matrix glycoprotein (GO:0005207); cell adhesion (GO:0005194); basement membrane (GO:0005604); basement membrane (GO:0005604)] located on: 2L 29E2-29E3;: 05/19/2001, mRNA sequence. (708 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Glt-RC feature: mRNA loc=2L:join(8664274..8664397,8665356..86666... 1322 0.0 Glt-RB feature: mRNA loc=2L:join(8664978..8665014,8665230..86652... 1322 0.0 Glt-RA feature: mRNA loc=2L:join(8664978..8665014,8665356..86666... 1322 0.0 >Glt-RC feature: mRNA loc=2L:join(8664274..8664397,8665356..8666600, 8666994..8669042);ID=FBan0009280;gene_id=FBgn0001114;gene _sym=Glt;sym=CG9280;scaffold=AE003622;len=3418 Length = 3418 Score = 1322 bits (667), Expect = 0.0 Identities = 672/674 (99%) Strand = Plus / Minus Query: 35 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 1961 Query: 95 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 1901 Query: 155 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgtggccatacaccagagctag 214 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1900 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgcggccatacaccagagctag 1841 Query: 215 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 1781 Query: 275 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1780 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 1721 Query: 335 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1720 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 1661 Query: 395 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1660 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 1601 Query: 455 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 1541 Query: 515 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1540 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 1481 Query: 575 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcangacaacgtcga 634 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1480 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 1421 Query: 635 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 1361 Query: 695 tgaacgcactggcg 708 |||||||||||||| Sbjct: 1360 tgaacgcactggcg 1347 >Glt-RB feature: mRNA loc=2L:join(8664978..8665014,8665230..8665248, 8665356..8666600, 8666994..8669042);ID=FBan0009280;gene_id=FBgn0001114;gene _sym=Glt;sym=CG9280;scaffold=AE003622;len=3350 Length = 3350 Score = 1322 bits (667), Expect = 0.0 Identities = 672/674 (99%) Strand = Plus / Minus Query: 35 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1952 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 1893 Query: 95 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1892 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 1833 Query: 155 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgtggccatacaccagagctag 214 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1832 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgcggccatacaccagagctag 1773 Query: 215 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1772 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 1713 Query: 275 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1712 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 1653 Query: 335 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1652 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 1593 Query: 395 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1592 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 1533 Query: 455 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1532 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 1473 Query: 515 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1472 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 1413 Query: 575 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcangacaacgtcga 634 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1412 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 1353 Query: 635 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 1293 Query: 695 tgaacgcactggcg 708 |||||||||||||| Sbjct: 1292 tgaacgcactggcg 1279 >Glt-RA feature: mRNA loc=2L:join(8664978..8665014,8665356..8666600, 8666994..8669041);ID=FBan0009280;gene_id=FBgn0001114;gene _sym=Glt;sym=CG9280;scaffold=AE003622;len=3330 Length = 3330 Score = 1322 bits (667), Expect = 0.0 Identities = 672/674 (99%) Strand = Plus / Minus Query: 35 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1933 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 1874 Query: 95 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1873 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 1814 Query: 155 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgtggccatacaccagagctag 214 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1813 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgcggccatacaccagagctag 1754 Query: 215 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 1694 Query: 275 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 1634 Query: 335 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 1574 Query: 395 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 1514 Query: 455 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1513 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 1454 Query: 515 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 1394 Query: 575 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcangacaacgtcga 634 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1393 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 1334 Query: 635 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 1274 Query: 695 tgaacgcactggcg 708 |||||||||||||| Sbjct: 1273 tgaacgcactggcg 1260 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,211 Number of Sequences: 18737 Number of extensions: 12211 Number of successful extensions: 288 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 285 Number of HSP's gapped (non-prelim): 3 length of query: 708 length of database: 41,270,998 effective HSP length: 17 effective length of query: 691 effective length of database: 40,952,469 effective search space: 28298156079 effective search space used: 28298156079 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI639774 BI639774|BI639774 SD22445.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD22445 5, mRNA sequence. (538 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,882 Number of Sequences: 18737 Number of extensions: 10882 Number of successful extensions: 216 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 216 Number of HSP's gapped (non-prelim): 0 length of query: 538 length of database: 41,270,998 effective HSP length: 17 effective length of query: 521 effective length of database: 40,952,469 effective search space: 21336236349 effective search space used: 21336236349 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI640517 BI640517|BI640517 SD23414.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD23414 5, mRNA sequence. (735 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,842 Number of Sequences: 18737 Number of extensions: 18842 Number of successful extensions: 688 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 688 Number of HSP's gapped (non-prelim): 0 length of query: 735 length of database: 41,270,998 effective HSP length: 17 effective length of query: 718 effective length of database: 40,952,469 effective search space: 29403872742 effective search space used: 29403872742 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BI641611 BI641611|BI641611 SD25037.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD25037 5 similar to CG15093: FBan0015093 GO:[mitochondrion (GO:0005739)] located on: 2R 55F1-55F1;: 05/19/2001, mRNA sequence. (599 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15093-RC feature: mRNA loc=2R:complement(13839389..13840037,13... 706 0.0 CG15093-RB feature: mRNA loc=2R:complement(13839388..13840546,13... 706 0.0 CG15093-RA feature: mRNA loc=2R:complement(13839389..13840677);I... 706 0.0 >CG15093-RC feature: mRNA loc=2R:complement(13839389..13840037,13840262..13840546, 13840614..13840761);ID=FBan0015093;gene_id=FBgn0034390;g ene_sym=CG15093;sym=CG15093;scaffold=AE003798;len=1082 Length = 1082 Score = 706 bits (356), Expect = 0.0 Identities = 376/383 (98%) Strand = Plus / Minus Query: 217 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 871 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 812 Query: 277 cttgtgggccagagatcccagcgggatgggtgagttggaggcgttggccactccggaggc 336 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 811 cttgtgcgccagagatcccagcgggatgggtgagttggaagcgttggccactccggaggc 752 Query: 337 cagacccagatccttggtgatcagagccgaggagaaaccggcggcgtagtccctgttggc 396 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 751 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 692 Query: 397 tggggcactggggcagactccgggcacggggttgtaaatctccgaggcccagcagcgtcc 456 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 691 tggggcactggggcagactccgggcacagggttgtagatctccgaggcccagcagcgtcc 632 Query: 457 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 572 Query: 517 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 512 Query: 577 ggcggnctgacccatgccataga 599 ||||| ||| ||||||||||||| Sbjct: 511 ggcggcctggcccatgccataga 489 >CG15093-RB feature: mRNA loc=2R:complement(13839388..13840546, 13840614..13840761);ID=FBan0015093;gene_id=FBgn0034390;ge ne_sym=CG15093;sym=CG15093;scaffold=AE003798;len=1307 Length = 1307 Score = 706 bits (356), Expect = 0.0 Identities = 376/383 (98%) Strand = Plus / Minus Query: 217 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1095 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 1036 Query: 277 cttgtgggccagagatcccagcgggatgggtgagttggaggcgttggccactccggaggc 336 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1035 cttgtgcgccagagatcccagcgggatgggtgagttggaagcgttggccactccggaggc 976 Query: 337 cagacccagatccttggtgatcagagccgaggagaaaccggcggcgtagtccctgttggc 396 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 975 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 916 Query: 397 tggggcactggggcagactccgggcacggggttgtaaatctccgaggcccagcagcgtcc 456 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 915 tggggcactggggcagactccgggcacagggttgtagatctccgaggcccagcagcgtcc 856 Query: 457 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 855 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 796 Query: 517 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 795 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 736 Query: 577 ggcggnctgacccatgccataga 599 ||||| ||| ||||||||||||| Sbjct: 735 ggcggcctggcccatgccataga 713 >CG15093-RA feature: mRNA loc=2R:complement(13839389..13840677);ID=FBan0015093;gene _id=FBgn0034390;gene_sym=CG15093;sym=CG15093;scaffold=AE0 03798;len=1289 Length = 1289 Score = 706 bits (356), Expect = 0.0 Identities = 376/383 (98%) Strand = Plus / Minus Query: 217 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1078 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 1019 Query: 277 cttgtgggccagagatcccagcgggatgggtgagttggaggcgttggccactccggaggc 336 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1018 cttgtgcgccagagatcccagcgggatgggtgagttggaagcgttggccactccggaggc 959 Query: 337 cagacccagatccttggtgatcagagccgaggagaaaccggcggcgtagtccctgttggc 396 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 958 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 899 Query: 397 tggggcactggggcagactccgggcacggggttgtaaatctccgaggcccagcagcgtcc 456 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 898 tggggcactggggcagactccgggcacagggttgtagatctccgaggcccagcagcgtcc 839 Query: 457 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 838 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 779 Query: 517 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 778 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 719 Query: 577 ggcggnctgacccatgccataga 599 ||||| ||| ||||||||||||| Sbjct: 718 ggcggcctggcccatgccataga 696 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,498 Number of Sequences: 18737 Number of extensions: 15498 Number of successful extensions: 328 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 319 Number of HSP's gapped (non-prelim): 9 length of query: 599 length of database: 41,270,998 effective HSP length: 17 effective length of query: 582 effective length of database: 40,952,469 effective search space: 23834336958 effective search space used: 23834336958 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AF132192 AF132192|AF132192 Drosophila melanogaster clone LD22218 unknown mRNA. (4601 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 109,318 Number of Sequences: 18737 Number of extensions: 109318 Number of successful extensions: 2622 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2622 Number of HSP's gapped (non-prelim): 0 length of query: 4601 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4582 effective length of database: 40,914,995 effective search space: 187472507090 effective search space used: 187472507090 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AF257740 AF257740|AF257740 Drosophila melanogaster BDGP clone SD08735 unknown mRNA. (3639 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 78,043 Number of Sequences: 18737 Number of extensions: 78043 Number of successful extensions: 1793 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1793 Number of HSP's gapped (non-prelim): 0 length of query: 3639 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3620 effective length of database: 40,914,995 effective search space: 148112281900 effective search space used: 148112281900 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY050234 AY050234|AY050234 Drosophila melanogaster SD02026 full length cDNA. (3561 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 73,085 Number of Sequences: 18737 Number of extensions: 73085 Number of successful extensions: 1375 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1375 Number of HSP's gapped (non-prelim): 0 length of query: 3561 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3542 effective length of database: 40,914,995 effective search space: 144920912290 effective search space used: 144920912290 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY058502 AY058502|AY058502 Drosophila melanogaster LD21171 full length cDNA. (1378 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,619 Number of Sequences: 18737 Number of extensions: 23619 Number of successful extensions: 522 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 522 Number of HSP's gapped (non-prelim): 0 length of query: 1378 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1360 effective length of database: 40,933,732 effective search space: 55669875520 effective search space used: 55669875520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060252 AY060252|AY060252 Drosophila melanogaster GH07822 full length cDNA. (3356 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 67,869 Number of Sequences: 18737 Number of extensions: 67869 Number of successful extensions: 1327 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1327 Number of HSP's gapped (non-prelim): 0 length of query: 3356 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3337 effective length of database: 40,914,995 effective search space: 136533338315 effective search space used: 136533338315 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060323 AY060323|AY060323 Drosophila melanogaster GH20809 full length cDNA. (2022 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 40,330 Number of Sequences: 18737 Number of extensions: 40330 Number of successful extensions: 714 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 714 Number of HSP's gapped (non-prelim): 0 length of query: 2022 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2004 effective length of database: 40,933,732 effective search space: 82031198928 effective search space used: 82031198928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060333 AY060333|AY060333 Drosophila melanogaster GH22170 full insert cDNA. (743 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,832 Number of Sequences: 18737 Number of extensions: 15832 Number of successful extensions: 488 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 488 Number of HSP's gapped (non-prelim): 0 length of query: 743 length of database: 41,270,998 effective HSP length: 17 effective length of query: 726 effective length of database: 40,952,469 effective search space: 29731492494 effective search space used: 29731492494 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060344 AY060344|AY060344 Drosophila melanogaster GH25505 full length cDNA. (2811 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 64,629 Number of Sequences: 18737 Number of extensions: 64629 Number of successful extensions: 1779 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1779 Number of HSP's gapped (non-prelim): 0 length of query: 2811 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2792 effective length of database: 40,914,995 effective search space: 114234666040 effective search space used: 114234666040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060345 AY060345|AY060345 Drosophila melanogaster GH25761 full length cDNA. (4205 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 118,118 Number of Sequences: 18737 Number of extensions: 118118 Number of successful extensions: 6859 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6859 Number of HSP's gapped (non-prelim): 0 length of query: 4205 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4186 effective length of database: 40,914,995 effective search space: 171270169070 effective search space used: 171270169070 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060372 AY060372|AY060372 Drosophila melanogaster LD23922 full length cDNA. (1721 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 37,560 Number of Sequences: 18737 Number of extensions: 37560 Number of successful extensions: 872 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 872 Number of HSP's gapped (non-prelim): 0 length of query: 1721 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1703 effective length of database: 40,933,732 effective search space: 69710145596 effective search space used: 69710145596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060392 AY060392|AY060392 Drosophila melanogaster LD29917 full length cDNA. (2146 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 53,208 Number of Sequences: 18737 Number of extensions: 53208 Number of successful extensions: 1318 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1318 Number of HSP's gapped (non-prelim): 0 length of query: 2146 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2128 effective length of database: 40,933,732 effective search space: 87106981696 effective search space used: 87106981696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060406 AY060406|AY060406 Drosophila melanogaster LD33458 full length cDNA. (1517 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 30,193 Number of Sequences: 18737 Number of extensions: 30193 Number of successful extensions: 627 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 627 Number of HSP's gapped (non-prelim): 0 length of query: 1517 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1499 effective length of database: 40,933,732 effective search space: 61359664268 effective search space used: 61359664268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060438 AY060438|AY060438 Drosophila melanogaster LD46618 full length cDNA. (5092 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 122,540 Number of Sequences: 18737 Number of extensions: 122540 Number of successful extensions: 7955 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7955 Number of HSP's gapped (non-prelim): 0 length of query: 5092 length of database: 41,270,998 effective HSP length: 19 effective length of query: 5073 effective length of database: 40,914,995 effective search space: 207561769635 effective search space used: 207561769635 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060463 AY060463|AY060463 Drosophila melanogaster SD04448 full length cDNA. (2301 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 45,592 Number of Sequences: 18737 Number of extensions: 45592 Number of successful extensions: 1111 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1111 Number of HSP's gapped (non-prelim): 0 length of query: 2301 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2283 effective length of database: 40,933,732 effective search space: 93451710156 effective search space used: 93451710156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060465 AY060465|AY060465 Drosophila melanogaster SD04624 full length cDNA. (3025 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 68,384 Number of Sequences: 18737 Number of extensions: 68384 Number of successful extensions: 1794 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1794 Number of HSP's gapped (non-prelim): 0 length of query: 3025 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3006 effective length of database: 40,914,995 effective search space: 122990474970 effective search space used: 122990474970 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060487 AY060487|AY060487 Drosophila melanogaster SD10988 full length cDNA. (1415 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 38,055 Number of Sequences: 18737 Number of extensions: 38055 Number of successful extensions: 1033 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1033 Number of HSP's gapped (non-prelim): 0 length of query: 1415 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1397 effective length of database: 40,933,732 effective search space: 57184423604 effective search space used: 57184423604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060598 AY060598|AY060598 Drosophila melanogaster GH01566 full insert cDNA. (2056 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 38,447 Number of Sequences: 18737 Number of extensions: 38447 Number of successful extensions: 1035 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1035 Number of HSP's gapped (non-prelim): 0 length of query: 2056 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2038 effective length of database: 40,933,732 effective search space: 83422945816 effective search space used: 83422945816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060773 AY060773|AY060773 Drosophila melanogaster GH23730 full length cDNA. (1176 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,846 Number of Sequences: 18737 Number of extensions: 27846 Number of successful extensions: 695 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 695 Number of HSP's gapped (non-prelim): 0 length of query: 1176 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1158 effective length of database: 40,933,732 effective search space: 47401261656 effective search space used: 47401261656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060781 AY060781|AY060781 Drosophila melanogaster GH25188 full length cDNA. (827 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,733 Number of Sequences: 18737 Number of extensions: 24733 Number of successful extensions: 783 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 783 Number of HSP's gapped (non-prelim): 0 length of query: 827 length of database: 41,270,998 effective HSP length: 17 effective length of query: 810 effective length of database: 40,952,469 effective search space: 33171499890 effective search space used: 33171499890 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060825 AY060825|AY060825 Drosophila melanogaster GM01206 full length cDNA. (1214 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,874 Number of Sequences: 18737 Number of extensions: 24874 Number of successful extensions: 556 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 556 Number of HSP's gapped (non-prelim): 0 length of query: 1214 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1196 effective length of database: 40,933,732 effective search space: 48956743472 effective search space used: 48956743472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060830 AY060830|AY060830 Drosophila melanogaster GM01456 full length cDNA. (1253 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,959 Number of Sequences: 18737 Number of extensions: 24959 Number of successful extensions: 587 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 587 Number of HSP's gapped (non-prelim): 0 length of query: 1253 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1235 effective length of database: 40,933,732 effective search space: 50553159020 effective search space used: 50553159020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060851 AY060851|AY060851 Drosophila melanogaster GM03003 full length cDNA. (1884 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 49,491 Number of Sequences: 18737 Number of extensions: 49491 Number of successful extensions: 1342 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1342 Number of HSP's gapped (non-prelim): 0 length of query: 1884 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1866 effective length of database: 40,933,732 effective search space: 76382343912 effective search space used: 76382343912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060869 AY060869|AY060869 Drosophila melanogaster GM03661 full length cDNA. (1159 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,750 Number of Sequences: 18737 Number of extensions: 24750 Number of successful extensions: 594 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 594 Number of HSP's gapped (non-prelim): 0 length of query: 1159 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1141 effective length of database: 40,933,732 effective search space: 46705388212 effective search space used: 46705388212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060886 AY060886|AY060886 Drosophila melanogaster GM04458 full length cDNA. (1095 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,699 Number of Sequences: 18737 Number of extensions: 21699 Number of successful extensions: 419 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 419 Number of HSP's gapped (non-prelim): 0 length of query: 1095 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1077 effective length of database: 40,933,732 effective search space: 44085629364 effective search space used: 44085629364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060896 AY060896|AY060896 Drosophila melanogaster GM04775 full length cDNA. (2038 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value br-RF feature: mRNA loc=X:join(1380910..1381479,1392604..1392792... 1176 0.0 >br-RF feature: mRNA loc=X:join(1380910..1381479,1392604..1392792, 1392868..1393321,1393411..1393684,1393772..1393911, 1394056..1394106, 1417402..1418314);ID=FBan0011491;gene_id=FBgn0000210;gene _sym=br;sym=CG11491;scaffold=AE003421;len=2591 Length = 2591 Score = 1176 bits (593), Expect = 0.0 Identities = 593/593 (100%) Strand = Plus / Minus Query: 1270 cacttccagtctgggcttggtggttgttgcatgtttgcctgcccctcctggttgcatgca 1329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2577 cacttccagtctgggcttggtggttgttgcatgtttgcctgcccctcctggttgcatgca 2518 Query: 1330 acatgatcagacactattttggggcagtgctaactgcggccctattccctttatgattct 1389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2517 acatgatcagacactattttggggcagtgctaactgcggccctattccctttatgattct 2458 Query: 1390 gctctgaatactcccgtcgctagctacttcgatttgctgatctgctcgtcggcgcttatt 1449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2457 gctctgaatactcccgtcgctagctacttcgatttgctgatctgctcgtcggcgcttatt 2398 Query: 1450 acttgttagttaatttaatttcagaacatttgtacttcgctggtaaaaatcactgagtta 1509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2397 acttgttagttaatttaatttcagaacatttgtacttcgctggtaaaaatcactgagtta 2338 Query: 1510 ctttgcggttttgttaaatacgttattttcttgatttgcaaaaacgtttacagctcatct 1569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2337 ctttgcggttttgttaaatacgttattttcttgatttgcaaaaacgtttacagctcatct 2278 Query: 1570 gtcttctatacaccaaactaacattgtatatgtgtatatcatcggcatatcggcttataa 1629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2277 gtcttctatacaccaaactaacattgtatatgtgtatatcatcggcatatcggcttataa 2218 Query: 1630 attgtatatggtaaatggtgtaaagtatatacatgtatacatagacattagtttagttgt 1689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2217 attgtatatggtaaatggtgtaaagtatatacatgtatacatagacattagtttagttgt 2158 Query: 1690 ttcgcttagcttgcgcatacgcatatgcacatttatcgtttatacgctcgcgtgtgtata 1749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2157 ttcgcttagcttgcgcatacgcatatgcacatttatcgtttatacgctcgcgtgtgtata 2098 Query: 1750 tgtatgtgtatataaaaaagtgattttaatttctgttactttattcgtcgtattcgtgaa 1809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2097 tgtatgtgtatataaaaaagtgattttaatttctgttactttattcgtcgtattcgtgaa 2038 Query: 1810 taagtagaaaaaattactttcctactgcatacttgatattttatccctgataa 1862 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2037 taagtagaaaaaattactttcctactgcatacttgatattttatccctgataa 1985 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 37,341 Number of Sequences: 18737 Number of extensions: 37341 Number of successful extensions: 933 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 931 Number of HSP's gapped (non-prelim): 2 length of query: 2038 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2020 effective length of database: 40,933,732 effective search space: 82686138640 effective search space used: 82686138640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060913 AY060913|AY060913 Drosophila melanogaster GM05817 full length cDNA. (762 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33184-RD feature: mRNA loc=2R:join(9018913..9019159,9019631..9... 1435 0.0 CG33184-RA feature: mRNA loc=2R:join(9018913..9019159,9019631..9... 1435 0.0 CG33184-RC feature: mRNA loc=2R:join(9019212..9019358,9019631..9... 1140 0.0 CG33184-RB feature: mRNA loc=2R:join(9019241..9019575,9019631..9... 1138 0.0 >CG33184-RD feature: mRNA loc=2R:join(9018913..9019159,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=830 Length = 830 Score = 1435 bits (724), Expect = 0.0 Identities = 730/732 (99%) Strand = Plus / Plus Query: 13 cataaataatgtctgtgcctttcattggcgcattgcggcgttccggcggcattgtgtccg 72 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 94 cataaataatgtctgtgcctttcagtggcgcattgcggcgttccggcggcattgtgtccg 153 Query: 73 ccattggcaagcagctgaagagcgtgaatttgaagggcgtcaagcggataaccgtgcagt 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 ccattggcaagcagctgaagagcgtgaatttgaagggcgtcaagcggataaccgtgcagt 213 Query: 133 tcgatccattcgcggaaaatgtcaagtccacacgggaattcctcttcctgctctccacac 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 tcgatccattcgcggaaaatgtcaagtccacacgggaattcctcttcctgctctccacac 273 Query: 193 ccaaagtggcagctacgaatcccaagtgcgtggtcaagccagaaatcgtctgcgatcgcc 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 ccaaagtggcagctacgaatcccaagtgcgtggtcaagccagaaatcgtctgcgatcgcc 333 Query: 253 agccggccaacatcaagtttgccctgattgattcagcgcaagaacaagcccaagtcaagg 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 agccggccaacatcaagtttgccctgattgattcagcgcaagaacaagcccaagtcaagg 393 Query: 313 agatccgcttcaacagcgataacctaaacacactagagctgctgcagctgtgcaacaagc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 agatccgcttcaacagcgataacctaaacacactagagctgctgcagctgtgcaacaagc 453 Query: 373 acgtgtccagcttggcaccgcgcgaggagatcaccaacaaggtcctgaccaaggcggaga 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 acgtgtccagcttggcaccgcgcgaggagatcaccaacaaggtcctgaccaaggcggaga 513 Query: 433 aacagaaactagcaggaggcgccggcggcggaaagaaggcaaccaaggagaagtaaccat 492 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 514 aacagaaactagcaggaggcgccggcggcggaaagaaggcaaccaagaagaagtaaccat 573 Query: 493 caggatggtgaggaagcacaaaggaacactggcggtgatcgagaagatctaccaggatat 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 caggatggtgaggaagcacaaaggaacactggcggtgatcgagaagatctaccaggatat 633 Query: 553 acccgcattctccgacatcttcaccgaggagagcttctacatgttcgccttctgtttcgt 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 acccgcattctccgacatcttcaccgaggagagcttctacatgttcgccttctgtttcgt 693 Query: 613 gtgcgccaccattctggtggccttcattctctcccggttcatcaccatcaagcccgtcga 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 gtgcgccaccattctggtggccttcattctctcccggttcatcaccatcaagcccgtcga 753 Query: 673 tttctaagccaattgtattgttcaattccgcacacgtacttttcaaaatatatatacgct 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 tttctaagccaattgtattgttcaattccgcacacgtacttttcaaaatatatatacgct 813 Query: 733 ctaacatgtaac 744 |||||||||||| Sbjct: 814 ctaacatgtaac 825 >CG33184-RA feature: mRNA loc=2R:join(9018913..9019159,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=830 Length = 830 Score = 1435 bits (724), Expect = 0.0 Identities = 730/732 (99%) Strand = Plus / Plus Query: 13 cataaataatgtctgtgcctttcattggcgcattgcggcgttccggcggcattgtgtccg 72 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 94 cataaataatgtctgtgcctttcagtggcgcattgcggcgttccggcggcattgtgtccg 153 Query: 73 ccattggcaagcagctgaagagcgtgaatttgaagggcgtcaagcggataaccgtgcagt 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 ccattggcaagcagctgaagagcgtgaatttgaagggcgtcaagcggataaccgtgcagt 213 Query: 133 tcgatccattcgcggaaaatgtcaagtccacacgggaattcctcttcctgctctccacac 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 tcgatccattcgcggaaaatgtcaagtccacacgggaattcctcttcctgctctccacac 273 Query: 193 ccaaagtggcagctacgaatcccaagtgcgtggtcaagccagaaatcgtctgcgatcgcc 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 ccaaagtggcagctacgaatcccaagtgcgtggtcaagccagaaatcgtctgcgatcgcc 333 Query: 253 agccggccaacatcaagtttgccctgattgattcagcgcaagaacaagcccaagtcaagg 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 agccggccaacatcaagtttgccctgattgattcagcgcaagaacaagcccaagtcaagg 393 Query: 313 agatccgcttcaacagcgataacctaaacacactagagctgctgcagctgtgcaacaagc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 agatccgcttcaacagcgataacctaaacacactagagctgctgcagctgtgcaacaagc 453 Query: 373 acgtgtccagcttggcaccgcgcgaggagatcaccaacaaggtcctgaccaaggcggaga 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 acgtgtccagcttggcaccgcgcgaggagatcaccaacaaggtcctgaccaaggcggaga 513 Query: 433 aacagaaactagcaggaggcgccggcggcggaaagaaggcaaccaaggagaagtaaccat 492 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 514 aacagaaactagcaggaggcgccggcggcggaaagaaggcaaccaagaagaagtaaccat 573 Query: 493 caggatggtgaggaagcacaaaggaacactggcggtgatcgagaagatctaccaggatat 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 caggatggtgaggaagcacaaaggaacactggcggtgatcgagaagatctaccaggatat 633 Query: 553 acccgcattctccgacatcttcaccgaggagagcttctacatgttcgccttctgtttcgt 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 acccgcattctccgacatcttcaccgaggagagcttctacatgttcgccttctgtttcgt 693 Query: 613 gtgcgccaccattctggtggccttcattctctcccggttcatcaccatcaagcccgtcga 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 gtgcgccaccattctggtggccttcattctctcccggttcatcaccatcaagcccgtcga 753 Query: 673 tttctaagccaattgtattgttcaattccgcacacgtacttttcaaaatatatatacgct 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 tttctaagccaattgtattgttcaattccgcacacgtacttttcaaaatatatatacgct 813 Query: 733 ctaacatgtaac 744 |||||||||||| Sbjct: 814 ctaacatgtaac 825 >CG33184-RC feature: mRNA loc=2R:join(9019212..9019358,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=730 Length = 730 Score = 1140 bits (575), Expect = 0.0 Identities = 578/579 (99%) Strand = Plus / Plus Query: 166 gggaattcctcttcctgctctccacacccaaagtggcagctacgaatcccaagtgcgtgg 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 gggaattcctcttcctgctctccacacccaaagtggcagctacgaatcccaagtgcgtgg 206 Query: 226 tcaagccagaaatcgtctgcgatcgccagccggccaacatcaagtttgccctgattgatt 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 tcaagccagaaatcgtctgcgatcgccagccggccaacatcaagtttgccctgattgatt 266 Query: 286 cagcgcaagaacaagcccaagtcaaggagatccgcttcaacagcgataacctaaacacac 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 cagcgcaagaacaagcccaagtcaaggagatccgcttcaacagcgataacctaaacacac 326 Query: 346 tagagctgctgcagctgtgcaacaagcacgtgtccagcttggcaccgcgcgaggagatca 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 tagagctgctgcagctgtgcaacaagcacgtgtccagcttggcaccgcgcgaggagatca 386 Query: 406 ccaacaaggtcctgaccaaggcggagaaacagaaactagcaggaggcgccggcggcggaa 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 ccaacaaggtcctgaccaaggcggagaaacagaaactagcaggaggcgccggcggcggaa 446 Query: 466 agaaggcaaccaaggagaagtaaccatcaggatggtgaggaagcacaaaggaacactggc 525 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 agaaggcaaccaagaagaagtaaccatcaggatggtgaggaagcacaaaggaacactggc 506 Query: 526 ggtgatcgagaagatctaccaggatatacccgcattctccgacatcttcaccgaggagag 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 ggtgatcgagaagatctaccaggatatacccgcattctccgacatcttcaccgaggagag 566 Query: 586 cttctacatgttcgccttctgtttcgtgtgcgccaccattctggtggccttcattctctc 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 cttctacatgttcgccttctgtttcgtgtgcgccaccattctggtggccttcattctctc 626 Query: 646 ccggttcatcaccatcaagcccgtcgatttctaagccaattgtattgttcaattccgcac 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 ccggttcatcaccatcaagcccgtcgatttctaagccaattgtattgttcaattccgcac 686 Query: 706 acgtacttttcaaaatatatatacgctctaacatgtaac 744 ||||||||||||||||||||||||||||||||||||||| Sbjct: 687 acgtacttttcaaaatatatatacgctctaacatgtaac 725 >CG33184-RB feature: mRNA loc=2R:join(9019241..9019575,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=918 Length = 918 Score = 1138 bits (574), Expect = 0.0 Identities = 577/578 (99%) Strand = Plus / Plus Query: 167 ggaattcctcttcctgctctccacacccaaagtggcagctacgaatcccaagtgcgtggt 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 336 ggaattcctcttcctgctctccacacccaaagtggcagctacgaatcccaagtgcgtggt 395 Query: 227 caagccagaaatcgtctgcgatcgccagccggccaacatcaagtttgccctgattgattc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 396 caagccagaaatcgtctgcgatcgccagccggccaacatcaagtttgccctgattgattc 455 Query: 287 agcgcaagaacaagcccaagtcaaggagatccgcttcaacagcgataacctaaacacact 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 456 agcgcaagaacaagcccaagtcaaggagatccgcttcaacagcgataacctaaacacact 515 Query: 347 agagctgctgcagctgtgcaacaagcacgtgtccagcttggcaccgcgcgaggagatcac 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 516 agagctgctgcagctgtgcaacaagcacgtgtccagcttggcaccgcgcgaggagatcac 575 Query: 407 caacaaggtcctgaccaaggcggagaaacagaaactagcaggaggcgccggcggcggaaa 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 576 caacaaggtcctgaccaaggcggagaaacagaaactagcaggaggcgccggcggcggaaa 635 Query: 467 gaaggcaaccaaggagaagtaaccatcaggatggtgaggaagcacaaaggaacactggcg 526 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 636 gaaggcaaccaagaagaagtaaccatcaggatggtgaggaagcacaaaggaacactggcg 695 Query: 527 gtgatcgagaagatctaccaggatatacccgcattctccgacatcttcaccgaggagagc 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 696 gtgatcgagaagatctaccaggatatacccgcattctccgacatcttcaccgaggagagc 755 Query: 587 ttctacatgttcgccttctgtttcgtgtgcgccaccattctggtggccttcattctctcc 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 756 ttctacatgttcgccttctgtttcgtgtgcgccaccattctggtggccttcattctctcc 815 Query: 647 cggttcatcaccatcaagcccgtcgatttctaagccaattgtattgttcaattccgcaca 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 816 cggttcatcaccatcaagcccgtcgatttctaagccaattgtattgttcaattccgcaca 875 Query: 707 cgtacttttcaaaatatatatacgctctaacatgtaac 744 |||||||||||||||||||||||||||||||||||||| Sbjct: 876 cgtacttttcaaaatatatatacgctctaacatgtaac 913 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,698 Number of Sequences: 18737 Number of extensions: 23698 Number of successful extensions: 701 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 697 Number of HSP's gapped (non-prelim): 4 length of query: 762 length of database: 41,270,998 effective HSP length: 17 effective length of query: 745 effective length of database: 40,952,469 effective search space: 30509589405 effective search space used: 30509589405 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060920 AY060920|AY060920 Drosophila melanogaster GM06310 full length cDNA. (2453 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 53,697 Number of Sequences: 18737 Number of extensions: 53697 Number of successful extensions: 1548 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1548 Number of HSP's gapped (non-prelim): 0 length of query: 2453 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2435 effective length of database: 40,933,732 effective search space: 99673637420 effective search space used: 99673637420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060924 AY060924|AY060924 Drosophila melanogaster GM06547 full length cDNA. (2413 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9266-RB feature: mRNA loc=2L:complement(20935261..20937488,209... 2252 0.0 >CG9266-RB feature: mRNA loc=2L:complement(20935261..20937488, 20938529..20938685);ID=FBan0009266;gene_id=FBgn0032909;ge ne_sym=CG9266;sym=CG9266;scaffold=AE003668;len=2385 Length = 2385 Score = 2252 bits (1136), Expect = 0.0 Identities = 1210/1237 (97%), Gaps = 3/1237 (0%) Strand = Plus / Plus Query: 1156 ggaaaagagttgctcccttgcgcttttttcttctagcaaatacccaagtggcggtgttga 1215 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1148 ggaaaagagttgttcccttgcgcttttttcttctagcaaatacccaagtggcggtgttga 1207 Query: 1216 aaccaacgtccaacgtccaggtcccaattccccagacccacctaatcctataggtttaat 1275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1208 aaccaacgtccaacgtccaggtcccaattccccagacccacctaatcctataggtttaat 1267 Query: 1276 gccgggcactgttgtccagactttttcgtgttccctgccgtttcttctttctttcacagg 1335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1268 gccgggcactgttgtccagactttttcgtgttccctgccgtttcttctttctttcacagg 1327 Query: 1336 cgttggcgctattgttgtagtttggtttggattggtcactggatcgggatatggattgga 1395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1328 cgttggcgctattgttgtagtttggtttggattggtcactggatcgggatatggattgga 1387 Query: 1396 aatggaaatggagtggaagctgaaatcataattaatccattgatttccaannnnnnn-ca 1454 |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1388 aatggaaatggagtggaagctgaaatcataattaatccattgatttccaattttttttca 1447 Query: 1455 gcttaaataattcacacaaatcatttcagcaataaatatgaattctttcgcagcatttaa 1514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1448 gcttaaataattcacacaaatcatttcagcaataaatatgaattctttcgcagcatttaa 1507 Query: 1515 caatgaatatttcagcaaacaaatgnnnnnnncagccaaggttaccttttttgttttaaa 1574 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 1508 caatgaatatttcagcaaacaaatgtttttttcagccaaggttaccttatttgttttaaa 1567 Query: 1575 taacatgggatccaattacaaattgatgagcaggtaatgaacgtagaaagaaaaaattga 1634 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1568 taacatgggatccaattacaaattgatgtgcaggtaatgaacgtagaaagaaaaaattga 1627 Query: 1635 atcattttaatttggaaacgccactgttgcaaactttgatttgcatgtaaagtcataaat 1694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1628 atcattttaatttggaaacgccactgttgcaaactttgatttgcatgtaaagtcataaat 1687 Query: 1695 aattcattttaacacatccaacatttatgaataattttttctgtgctctttatattctag 1754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1688 aattcattttaacacatccaacatttatgaataattttttctgtgctctttatattctag 1747 Query: 1755 ctgtcgctattaatcaaattatacgtttactacatgcatttttaaattgtttatttatgt 1814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1748 ctgtcgctattaatcaaattatacgtttactacatgcatttttaaattgtttatttatgt 1807 Query: 1815 cgctacgtttatgcagccgcatggaaattttgtgtgacagagtgtcataaactggagaat 1874 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 cgctacgtttatgcagccgcctggaaattttgtgtgacagagtgtcataaactggagaat 1867 Query: 1875 gcgggtggccatcttacctggcgcttgattgattccaccagccaaaaaataaacacctgg 1934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1868 gcgggtggccatcttacctggcgcttgattgattccaccagccaaaaaataaacacctgg 1927 Query: 1935 aacgacgccagatgtcgaggataataaatttgccaggattcgactacacttgggatacat 1994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1928 aacgacgccagatgtcgaggataataaatttgccaggattcgactacacttgggatacat 1987 Query: 1995 tttgaaattctggaagtcagtagcccgactcaaagtatacgaaatggaaatgtatatatt 2054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1988 tttgaaattctggaagtcagtagcccgactcaaagtatacgaaatggaaatgtatatatt 2047 Query: 2055 gtttataaaaacgtcaaatcgcctatagactgtagcactatagctaaaaggtatatttct 2114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2048 gtttataaaaacgtcaaatcgcctatagactgtagcactatagctaaaaggtatatttct 2107 Query: 2115 taaaagaaattatgcttaaaagctagtaatgtaaattagggctgccttgtatttcaaaaa 2174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2108 taaaagaaattatgcttaaaagctagtaatgtaaattagggctgccttgtatttcaaaaa 2167 Query: 2175 gttgtataaaaactaaattatgtgtggaaaccgaaatgcttgtgcttaagaaattatgat 2234 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2168 gttgtataaaaactaaattatgtgtggaaaccgaaatgcttgtgctcaagaaattatgat 2227 Query: 2235 tataatctgaactgtagaaattaggtgatcttattgcctgcataaattgtaaaacaaact 2294 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 2228 tataatctgaactgtagaaattaggtgatcttaatgcctgcataaagtgtaaaacaaact 2287 Query: 2295 g--aatatgtacaaattattaactgattccgtccgcaccctgacaactgtgttaactaac 2352 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2288 gcaagaatgtacaaattattaactgattccgtccgcaccctgacaactgtgttaactaac 2347 Query: 2353 tttaagatctgaaaataaaaactaatttatataaaat 2389 |||||||||| |||||||||||||||||||||||||| Sbjct: 2348 tttaagatctaaaaataaaaactaatttatataaaat 2384 Score = 1873 bits (945), Expect = 0.0 Identities = 960/965 (99%) Strand = Plus / Plus Query: 182 agcatcgtccacaattagcgccatcgtagccagggagccaagaagcaaccaatggaacat 241 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 158 agcatcgtccataattagcgccatcgtagccagggagccaagaagcaaccaatggaacat 217 Query: 242 gttgatgccggtgcgggagtacaacaagcacatagccaaaataccaaattgcaagatgag 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 218 gttgatgccggtgcgggagtacaacaagcacatagccaaaataccaaattgcaagatgag 277 Query: 302 gcagcggccaacgcttagagccaccttcgcatccctgctgctgctccttctcattgccca 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 278 gcagcggccaacgcttagagccaccttcgcatccctgctgctgctccttctcattgccca 337 Query: 362 gacgctcgatccggcggctgccagtggatcagccggaagtggtgccgcagcggccggagc 421 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 gacgctcgatctggcggctgccagtggatcagccggaagtggtgccgcagcggccggagc 397 Query: 422 tgcaggtcctgccgcgtccggtggcgcgggtggcgggagtctgagcagtggagcccccac 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 tgcaggtcctgccgcgtccggtggcgcgggtggcgggagtctgagcagtggagcccccac 457 Query: 482 tctcattgccaatctcacggaacaaggcagtcccggtgtgtataattcgacaatgggtta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 tctcattgccaatctcacggaacaaggcagtcccggtgtgtataattcgacaatgggtta 517 Query: 542 atgctaattactagtatatatatacatggcatttacgtggcagtttgctgacctttttac 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 518 atgctaattactagtatatatatacatggcatttacgtggcagtttgctgacctttttac 577 Query: 602 cttttggccctcaacgtaaacgacgtcgtcatttcggtatttgctaaatgtttatgcgga 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 578 cttttggccctcaacgtaaacgacgtcgtcatttcggtatttgctaaatgtttatgcgga 637 Query: 662 atcgtttctatgaaaaccgcctacaataacattcattcaaatcgaacaaacaaattaaat 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 638 atcgtttctatgaaaaccgcctacaataacattcattcaaatcgaacaaacaaattaaat 697 Query: 722 tacattgttcgcgtcacttaaaatatgattttaaataaatattattcttttctaagacca 781 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 698 tacattgttcgcgtcacttagaatatgattttaaataaatattattcttttctaagacca 757 Query: 782 tcgagttgtcgcttttcgcaaagtgtagaattcatgatattcttaccataaacttagaat 841 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 758 tcgagttgtcgcttttcgcaaagtgtagaattcatgatattcttagcataaacttagaat 817 Query: 842 atacgtccgtgccgatttttgtgtgtatttccttgtgcgcatttccggtttctgcttccg 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 818 atacgtccgtgccgatttttgtgtgtatttccttgtgcgcatttccggtttctgcttccg 877 Query: 902 gttgccacgcggcggggatggcaaaaactattagccacttggcgctaaacaacgccaccc 961 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 878 gttgccacgcggcgggggtggcaaaaactattagccacttggcgctaaacaacgccaccc 937 Query: 962 acgcccactcttccccgctactgaagcaaaacactaagcatcaattaacccaattttcag 1021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 938 acgcccactcttccccgctactgaagcaaaacactaagcatcaattaacccaattttcag 997 Query: 1022 aatccattttcacctgcagttacggtttcagctcacagctccggacctttggccttttct 1081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 998 aatccattttcacctgcagttacggtttcagctcacagctccggacctttggccttttct 1057 Query: 1082 aagtattttctagctgcgtgtttcacagctccatgcttacatatacaaatatatgcattg 1141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1058 aagtattttctagctgcgtgtttcacagctccatgcttacatatacaaatatatgcattg 1117 Query: 1142 ctatg 1146 ||||| Sbjct: 1118 ctatg 1122 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 72,345 Number of Sequences: 18737 Number of extensions: 72345 Number of successful extensions: 1784 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1779 Number of HSP's gapped (non-prelim): 3 length of query: 2413 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2395 effective length of database: 40,933,732 effective search space: 98036288140 effective search space used: 98036288140 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060928 AY060928|AY060928 Drosophila melanogaster GM06790 full length cDNA. (1354 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 29,714 Number of Sequences: 18737 Number of extensions: 29714 Number of successful extensions: 904 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 904 Number of HSP's gapped (non-prelim): 0 length of query: 1354 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1336 effective length of database: 40,933,732 effective search space: 54687465952 effective search space used: 54687465952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060929 AY060929|AY060929 Drosophila melanogaster GM06804 full length cDNA. (1711 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 47,792 Number of Sequences: 18737 Number of extensions: 47792 Number of successful extensions: 2302 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2302 Number of HSP's gapped (non-prelim): 0 length of query: 1711 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1693 effective length of database: 40,933,732 effective search space: 69300808276 effective search space used: 69300808276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060931 AY060931|AY060931 Drosophila melanogaster GM07040 full length cDNA. (3544 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 75,094 Number of Sequences: 18737 Number of extensions: 75094 Number of successful extensions: 1902 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1902 Number of HSP's gapped (non-prelim): 0 length of query: 3544 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3525 effective length of database: 40,914,995 effective search space: 144225357375 effective search space used: 144225357375 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060932 AY060932|AY060932 Drosophila melanogaster GM07077 full length cDNA. (1385 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31688-RA feature: mRNA loc=2L:join(20398769..20398903,20401666... 948 0.0 >CG31688-RA feature: mRNA loc=2L:join(20398769..20398903,20401666..20402471, 20410799..20410853,20410907..20410988,20411384..20411515, 20411687..20413687);ID=FBan0031688;gene_id=FBgn0051688;ge ne_sym=CG31688;sym=CG31688;scaffold=AE003666;len=3211 Length = 3211 Score = 948 bits (478), Expect = 0.0 Identities = 478/478 (100%) Strand = Plus / Plus Query: 1 cttagatcagggatgcaagccaaggggaatcgggatgttttcggaattcacaatcatggt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2734 cttagatcagggatgcaagccaaggggaatcgggatgttttcggaattcacaatcatggt 2793 Query: 61 tcgatttagtgggtcatgtgaaagttctctacttgaaagtgaagaagatatcaaaagctt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2794 tcgatttagtgggtcatgtgaaagttctctacttgaaagtgaagaagatatcaaaagctt 2853 Query: 121 gtggggattggaattcatatccacaaaacagctttccaaaatgatttcaagttccaaata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2854 gtggggattggaattcatatccacaaaacagctttccaaaatgatttcaagttccaaata 2913 Query: 181 cttccctcaaaacttttgtatctaaaaaataattctacattttccgaaccactagcctta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 cttccctcaaaacttttgtatctaaaaaataattctacattttccgaaccactagcctta 2973 Query: 241 cgaaatatggatatgatataatcacgagcggcttgcatccctgttatattttggtcgctg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2974 cgaaatatggatatgatataatcacgagcggcttgcatccctgttatattttggtcgctg 3033 Query: 301 ttctcatttgcgatatcaacaagagattccatttcgatcgacagtcgatacacgagtcat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3034 ttctcatttgcgatatcaacaagagattccatttcgatcgacagtcgatacacgagtcat 3093 Query: 361 gaatcattcatcacgaatccctatcattcggtgaaagttcataatgtacaatttatatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3094 gaatcattcatcacgaatccctatcattcggtgaaagttcataatgtacaatttatatat 3153 Query: 421 gctaaaacgtaaaccagaaatgttagtaaacaatttttatacacacatcacagccaca 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3154 gctaaaacgtaaaccagaaatgttagtaaacaatttttatacacacatcacagccaca 3211 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,874 Number of Sequences: 18737 Number of extensions: 28874 Number of successful extensions: 1022 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1019 Number of HSP's gapped (non-prelim): 3 length of query: 1385 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1367 effective length of database: 40,933,732 effective search space: 55956411644 effective search space used: 55956411644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060934 AY060934|AY060934 Drosophila melanogaster GM07606 full length cDNA. (1863 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 37,992 Number of Sequences: 18737 Number of extensions: 37992 Number of successful extensions: 875 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 875 Number of HSP's gapped (non-prelim): 0 length of query: 1863 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1845 effective length of database: 40,933,732 effective search space: 75522735540 effective search space used: 75522735540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060950 AY060950|AY060950 Drosophila melanogaster GM08676 full length cDNA. (2027 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 50,550 Number of Sequences: 18737 Number of extensions: 50550 Number of successful extensions: 1466 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1466 Number of HSP's gapped (non-prelim): 0 length of query: 2027 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2009 effective length of database: 40,933,732 effective search space: 82235867588 effective search space used: 82235867588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060965 AY060965|AY060965 Drosophila melanogaster GM09570 full length cDNA. (1294 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR30066-RA feature: ncRNA loc=2R:complement(9353318..9354071,935... 2298 0.0 >CR30066-RA feature: ncRNA loc=2R:complement(9353318..9354071, 9354108..9354651);ID=FBan0030066;gene_id=FBgn0050066;gene _sym=CR30066;sym=CR30066;type=ncRNA;scaffold=AE003815;len =1298 Length = 1298 Score = 2298 bits (1159), Expect = 0.0 Identities = 1252/1281 (97%), Gaps = 5/1281 (0%) Strand = Plus / Minus Query: 1 atacatacgtagctatatagcacgcttccagacttctacgattctccgtttctcggcagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1298 atacatacgtagctatatagcacgcttccagacttctacgattctccgtttctcggcagc 1239 Query: 61 cgcactttgtgagtcgtttgtgtaatctgcatcaaaacggcggaaaaacatctgcttcag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1238 cgcactttgtgagtcgtttgtgtaatctgcatcaaaacggcggaaaaacatctgcttcag 1179 Query: 121 cacgtttttccaagttgctagggaaacaaacccaatagtttcgaatgcaaaacatcaaac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1178 cacgtttttccaagttgctagggaaacaaacccaatagtttcgaatgcaaaacatcaaac 1119 Query: 181 aaaaatcaacgaaaattccaagtgcgccagtgaagtgcgatgaattcgaaaccacaatta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1118 aaaaatcaacgaaaattccaagtgcgccagtgaagtgcgatgaattcgaaaccacaatta 1059 Query: 241 tgaaatgtagattgtagcaaagtgatttgatttcatttgatttgtgtaatgcaatagccg 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1058 tgaaatgtagattgtagcaaagtgatttgatttcatttgatttgtgtaatgcaatagtcg 999 Query: 301 acggcggttaacaatagcaatcactaataaattcattaggctaa-gccaagattaaatta 359 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 998 acggcggttaacaatagcaatcactaataaattcattaggctaatgccaagattaaatta 939 Query: 360 aatcagcttcaacaggcttaattaaaacgaaactttccaatttcaaagtacactcaattg 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 938 aatcagcttcaacaggcttaattaaaacgaaactttccaatttcaaagtacactcaattg 879 Query: 420 agtgtgaagaggcgaaaagagagcgctgtttataataataatagaagcacagacacaatt 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 878 agtgtgaagaggcgaaaagagagcgctgtttataataataatagaagcacagacacaatt 819 Query: 480 acgaaaaaagtattatcaatgtacgaaaatatcagtacgtctaaccgtgacgcgaaaacc 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 818 acgaaaaaagtattatcaatgtacgaaaatatcagtacgtctaaccgtgacgcgaaaacc 759 Query: 540 catacccatatacccatatacccatgcccatgcccatgcttgtatccaaactgaaactga 599 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 758 catacccatatacccatatacccatgcccatgcccatgctcgtatccaaactgaaactga 699 Query: 600 aactgaattggaaaccaacgtaaccgcgagcacgcgtctccatctctccgggctttaaca 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 698 aactgaattggaaaccaacgtaaccgcgagcacgcgtctccatctctccgggctttaaca 639 Query: 660 atgggggtccgccgtgaacgtgaataatatccatatccatatccgtgccacgcgatttgt 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 638 atgggggtccgccgtgaacgtgaataatatccatatccatatccgtgccacgcgatttgt 579 Query: 720 cgttcagtg-nnnnnnnnngcctttagttggt--gcgaatacgaaaaacttaagaagggg 776 ||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct: 578 cgttcagtgttttttttttgcctttagttggtgcgcgaatacgaaaaacttaagaagggg 519 Query: 777 ctggggaaaccagattccagtttcactggctgccgccccggaaaaccttgacaatcacca 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 518 ctggggaaaccagattccagtttcactggctgccgccccggaaaaccttgacaatcacca 459 Query: 837 tctagttttgtgggcaaggtgagggcagctgccccgtatctctgattcagcctgcattgt 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 tctagttttgtgggcaaggtgagggcagctgccccgtatctctgattcagcctgcattgt 399 Query: 897 gcgtgtgccgcaattaaaagtaaac-aaagtgtcaagaaaaactagctagtttccaaatt 955 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 398 gcgtgtgccgcaattaaaagtaaacaaaagtgtcaagaaaaactagctagtttccaaatt 339 Query: 956 cgaatatcgcaataccctttcaacatgtgcaaaaaccttatatagtgtatagtatcgagt 1015 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 338 cgaatttcgcaataccctttcaacatgtgcaaaaaccttatgtagtgtatagtatcgagt 279 Query: 1016 tcaagttgtaaaaaattccaaatttactcgaatcataaatgaaactattatctacctacg 1075 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 278 ttaagttgtaaaagattccaaatttactcgaatcataaatgaaactattatctacctacg 219 Query: 1076 ataaattaaattcattgaaattgtgacaacatgaaatactaattattgcaatatcattgc 1135 ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 218 ataaattgaattcattgaaattgtgaccaaatgaaatactaattattgcaatatcattgc 159 Query: 1136 taacaattacaaatgatatacctttttacctgaaacctaacaagattgtaaacataatgg 1195 ||||||||||| ||||| ||| ||||||| | |||| ||||||||||||||||||||||| Sbjct: 158 taacaattacatatgatttacgtttttactttaaacttaacaagattgtaaacataatgg 99 Query: 1196 cctactttgtgtcaattcatttgaaaatagcccacacatattgttacttaacatgcctcc 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98 cctactttgtgtcaattcatttgaaaatagcccacacatattgttacttaacatgcctcc 39 Query: 1256 gtaaactgtaatacccttcgt 1276 ||||||||||||||||||||| Sbjct: 38 gtaaactgtaatacccttcgt 18 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,146 Number of Sequences: 18737 Number of extensions: 28146 Number of successful extensions: 889 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 878 Number of HSP's gapped (non-prelim): 4 length of query: 1294 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1276 effective length of database: 40,933,732 effective search space: 52231442032 effective search space used: 52231442032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060968 AY060968|AY060968 Drosophila melanogaster GM09783 full length cDNA. (1211 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 29,353 Number of Sequences: 18737 Number of extensions: 29353 Number of successful extensions: 544 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 544 Number of HSP's gapped (non-prelim): 0 length of query: 1211 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1193 effective length of database: 40,933,732 effective search space: 48833942276 effective search space used: 48833942276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY060974 AY060974|AY060974 Drosophila melanogaster GM10308 full length cDNA. (1917 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 38,036 Number of Sequences: 18737 Number of extensions: 38036 Number of successful extensions: 873 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 873 Number of HSP's gapped (non-prelim): 0 length of query: 1917 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1899 effective length of database: 40,933,732 effective search space: 77733157068 effective search space used: 77733157068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061016 AY061016|AY061016 Drosophila melanogaster HL03793 full length cDNA. (1940 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 42,894 Number of Sequences: 18737 Number of extensions: 42894 Number of successful extensions: 974 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 974 Number of HSP's gapped (non-prelim): 0 length of query: 1940 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1922 effective length of database: 40,933,732 effective search space: 78674632904 effective search space used: 78674632904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061024 AY061024|AY061024 Drosophila melanogaster HL04994 full length cDNA. (1585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 33,366 Number of Sequences: 18737 Number of extensions: 33366 Number of successful extensions: 1245 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1245 Number of HSP's gapped (non-prelim): 0 length of query: 1585 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1567 effective length of database: 40,933,732 effective search space: 64143158044 effective search space used: 64143158044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061032 AY061032|AY061032 Drosophila melanogaster HL05775 full length cDNA. (1890 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 39,691 Number of Sequences: 18737 Number of extensions: 39691 Number of successful extensions: 1389 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1389 Number of HSP's gapped (non-prelim): 0 length of query: 1890 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1872 effective length of database: 40,933,732 effective search space: 76627946304 effective search space used: 76627946304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061036 AY061036|AY061036 Drosophila melanogaster HL07357 full length cDNA. (2366 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 54,375 Number of Sequences: 18737 Number of extensions: 54375 Number of successful extensions: 1713 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1713 Number of HSP's gapped (non-prelim): 0 length of query: 2366 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2348 effective length of database: 40,933,732 effective search space: 96112402736 effective search space used: 96112402736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061050 AY061050|AY061050 Drosophila melanogaster LD02060 full length cDNA. (1556 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 33,085 Number of Sequences: 18737 Number of extensions: 33085 Number of successful extensions: 1218 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1218 Number of HSP's gapped (non-prelim): 0 length of query: 1556 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1538 effective length of database: 40,933,732 effective search space: 62956079816 effective search space used: 62956079816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061174 AY061174|AY061174 Drosophila melanogaster LD14406 full length cDNA. (1423 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,890 Number of Sequences: 18737 Number of extensions: 24890 Number of successful extensions: 672 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 672 Number of HSP's gapped (non-prelim): 0 length of query: 1423 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1405 effective length of database: 40,933,732 effective search space: 57511893460 effective search space used: 57511893460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061224 AY061224|AY061224 Drosophila melanogaster LD16711 full length cDNA. (1672 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 38,509 Number of Sequences: 18737 Number of extensions: 38509 Number of successful extensions: 891 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 891 Number of HSP's gapped (non-prelim): 0 length of query: 1672 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1654 effective length of database: 40,933,732 effective search space: 67704392728 effective search space used: 67704392728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061271 AY061271|AY061271 Drosophila melanogaster LD19629 full length cDNA. (1872 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 42,659 Number of Sequences: 18737 Number of extensions: 42659 Number of successful extensions: 896 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 896 Number of HSP's gapped (non-prelim): 0 length of query: 1872 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1854 effective length of database: 40,933,732 effective search space: 75891139128 effective search space used: 75891139128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061499 AY061499|AY061499 Drosophila melanogaster LD45965 full length cDNA. (945 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,525 Number of Sequences: 18737 Number of extensions: 20525 Number of successful extensions: 466 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 466 Number of HSP's gapped (non-prelim): 0 length of query: 945 length of database: 41,270,998 effective HSP length: 18 effective length of query: 927 effective length of database: 40,933,732 effective search space: 37945569564 effective search space used: 37945569564 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY061584 AY061584|AY061584 Drosophila melanogaster SD03311 full length cDNA. (1798 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 33,038 Number of Sequences: 18737 Number of extensions: 33038 Number of successful extensions: 732 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 732 Number of HSP's gapped (non-prelim): 0 length of query: 1798 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1780 effective length of database: 40,933,732 effective search space: 72862042960 effective search space used: 72862042960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY069269 AY069269|AY069269 Drosophila melanogaster GM09534 full length cDNA. (912 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,472 Number of Sequences: 18737 Number of extensions: 16472 Number of successful extensions: 363 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 363 Number of HSP's gapped (non-prelim): 0 length of query: 912 length of database: 41,270,998 effective HSP length: 17 effective length of query: 895 effective length of database: 40,952,469 effective search space: 36652459755 effective search space used: 36652459755 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY069348 AY069348|AY069348 Drosophila melanogaster LD05623 full length cDNA. (1588 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 32,979 Number of Sequences: 18737 Number of extensions: 32979 Number of successful extensions: 611 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 611 Number of HSP's gapped (non-prelim): 0 length of query: 1588 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1570 effective length of database: 40,933,732 effective search space: 64265959240 effective search space used: 64265959240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY069828 AY069828|AY069828 Drosophila melanogaster SD07683 full length cDNA. (3706 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 72,641 Number of Sequences: 18737 Number of extensions: 72641 Number of successful extensions: 1475 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1475 Number of HSP's gapped (non-prelim): 0 length of query: 3706 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3687 effective length of database: 40,914,995 effective search space: 150853586565 effective search space used: 150853586565 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070493 AY070493|AY070493 Drosophila melanogaster GH01976 full length cDNA. (3809 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Rgk1-RA feature: mRNA loc=2R:complement(14375862..14376434,14376... 1144 0.0 >Rgk1-RA feature: mRNA loc=2R:complement(14375862..14376434,14376505..14376645, 14376715..14376850,14378281..14378473,14378967..14379058, 14381262..14381356,14381793..14382059,14382119..14382220, 14382405..14382517,14383104..14383406, 14388918..14389209);ID=FBan0009811;gene_id=FBgn0034434;ge ne_sym=Rgk1;sym=CG9811;scaffold=AE003796;len=2307 Length = 2307 Score = 1144 bits (577), Expect = 0.0 Identities = 577/577 (100%) Strand = Plus / Minus Query: 843 aagtttcattcggcggacaagcgccatatcttcaaaaaatcagtacaattggtattcatt 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2307 aagtttcattcggcggacaagcgccatatcttcaaaaaatcagtacaattggtattcatt 2248 Query: 903 cgtccacgaacaagggtaaaatattattttctcattttaaaaattattgctttttatttg 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2247 cgtccacgaacaagggtaaaatattattttctcattttaaaaattattgctttttatttg 2188 Query: 963 gattcctttgtattacgatttctttcaatcaaaaatataactaatttattccagtcgccg 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2187 gattcctttgtattacgatttctttcaatcaaaaatataactaatttattccagtcgccg 2128 Query: 1023 tattacaacgagcattcaaaattatcccaactcatgcttagaggaaaacgaaagagcata 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2127 tattacaacgagcattcaaaattatcccaactcatgcttagaggaaaacgaaagagcata 2068 Query: 1083 aaaaaccaattacaaataatagttttatatttagacaaactatatacaatgattaatgga 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2067 aaaaaccaattacaaataatagttttatatttagacaaactatatacaatgattaatgga 2008 Query: 1143 ggaagtgactagcgtaaattaagactaaaattatacacaatatgtacagttgggaataat 1202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2007 ggaagtgactagcgtaaattaagactaaaattatacacaatatgtacagttgggaataat 1948 Query: 1203 acccccggtagtagtcgagtctgtttcttctttaacttaggatcttgcatactctatagg 1262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1947 acccccggtagtagtcgagtctgtttcttctttaacttaggatcttgcatactctatagg 1888 Query: 1263 aaacttgtgggttacactttggataatctctgtgcttagagtacatgcagattctcgcag 1322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1887 aaacttgtgggttacactttggataatctctgtgcttagagtacatgcagattctcgcag 1828 Query: 1323 ctcttcgacttggagtcccgagtccacacgcggcccaaaagtcccttgactttcaggctg 1382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1827 ctcttcgacttggagtcccgagtccacacgcggcccaaaagtcccttgactttcaggctg 1768 Query: 1383 gtggaggtccttgatccacggtatttgcggggactgc 1419 ||||||||||||||||||||||||||||||||||||| Sbjct: 1767 gtggaggtccttgatccacggtatttgcggggactgc 1731 Score = 383 bits (193), Expect = e-105 Identities = 193/193 (100%) Strand = Plus / Minus Query: 3262 cttcagaggtgaccagtcgactcctggccaggtcggccttgttcgatactagaatgactg 3321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1457 cttcagaggtgaccagtcgactcctggccaggtcggccttgttcgatactagaatgactg 1398 Query: 3322 ccttctgggcgatgttctgattggtccagagcacctgcagcacctgctccgccacactga 3381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1397 ccttctgggcgatgttctgattggtccagagcacctgcagcacctgctccgccacactga 1338 Query: 3382 agctgctcctgtccgcggccgaatagatgacgcagtaaccgtgcggatcgtagttggtca 3441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1337 agctgctcctgtccgcggccgaatagatgacgcagtaaccgtgcggatcgtagttggtca 1278 Query: 3442 ggcactcatccgg 3454 ||||||||||||| Sbjct: 1277 ggcactcatccgg 1265 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 85,707 Number of Sequences: 18737 Number of extensions: 85707 Number of successful extensions: 2145 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2141 Number of HSP's gapped (non-prelim): 4 length of query: 3809 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3790 effective length of database: 40,914,995 effective search space: 155067831050 effective search space used: 155067831050 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070502 AY070502|AY070502 Drosophila melanogaster GH08880 full length cDNA. (1926 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value GNBP2-RB feature: mRNA loc=3L:complement(18622352..18622854,1862... 2908 0.0 GNBP2-RA feature: mRNA loc=3L:complement(18622351..18622854,1862... 2637 0.0 GNBP2-RD feature: mRNA loc=3L:complement(18622351..18622854,1862... 2520 0.0 GNBP2-RC feature: mRNA loc=3L:complement(18622352..18622854,1862... 1485 0.0 CG15649-RA feature: mRNA loc=2R:complement(16016763..16016938,16... 745 0.0 >GNBP2-RB feature: mRNA loc=3L:complement(18622352..18622854,18622927..18622983, 18623048..18623361,18623424..18623856, 18624098..18624305);ID=FBan0004144;gene_id=FBgn0040322;ge ne_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1515 Length = 1515 Score = 2908 bits (1467), Expect = 0.0 Identities = 1470/1471 (99%) Strand = Plus / Minus Query: 1 acaaatgccacagctactccgcataaaccctaacatagtccatgaccatggcgctgtgcc 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1483 acaaatgccacagctactccgcataaaccctaacatagtctatgaccatggcgctgtgcc 1424 Query: 61 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1423 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 1364 Query: 121 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1363 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 1304 Query: 181 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1303 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 1244 Query: 241 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1243 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 1184 Query: 301 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1183 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 1124 Query: 361 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 1064 Query: 421 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1063 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 1004 Query: 481 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1003 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 944 Query: 541 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 943 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 884 Query: 601 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 883 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 824 Query: 661 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 823 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 764 Query: 721 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 763 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 704 Query: 781 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 703 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 644 Query: 841 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 584 Query: 901 agatcagttcaccctggcaagtatggcgtccattgctcactatcgtttgggcggccttgc 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 agatcagttcaccctggcaagtatggcgtccattgctcactatcgtttgggcggccttgc 524 Query: 961 agcgtttggcttgctgtgcaggagctaggtatgcctggcactcgccctctcctgtaagga 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 agcgtttggcttgctgtgcaggagctaggtatgcctggcactcgccctctcctgtaagga 464 Query: 1021 atgttatgcctcgcgagctagagtctttggtggtcagtagccgggtgtttatgatcaccc 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 atgttatgcctcgcgagctagagtctttggtggtcagtagccgggtgtttatgatcaccc 404 Query: 1081 tggtttcactcttttcgaagatttcctcattgaactgcaccagcattgatatctgcagct 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 tggtttcactcttttcgaagatttcctcattgaactgcaccagcattgatatctgcagct 344 Query: 1141 tgtcgttgttctgcagactcatcttttgcttggagacccaacttccgttcactgcctccg 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 tgtcgttgttctgcagactcatcttttgcttggagacccaacttccgttcactgcctccg 284 Query: 1201 tgatgtagtccattagagccgggcaggtgtcgtcaatttggaacatgtagaacacccgct 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 tgatgtagtccattagagccgggcaggtgtcgtcaatttggaacatgtagaacacccgct 224 Query: 1261 gtatgccaggctcatctggtatggacacttcgaatccttcatcctttagcatttcaaaat 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 gtatgccaggctcatctggtatggacacttcgaatccttcatcctttagcatttcaaaat 164 Query: 1321 taatactgggtactttaaaaccaaagattttattgtttgaaatgagcaataataaacatg 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 taatactgggtactttaaaaccaaagattttattgtttgaaatgagcaataataaacatg 104 Query: 1381 gcagaaattcccacctcatgacgcagttttaattactcttaatatgtgtactaactagaa 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 103 gcagaaattcccacctcatgacgcagttttaattactcttaatatgtgtactaactagaa 44 Query: 1441 tccgattagcgtattaatctgagaagctctg 1471 ||||||||||||||||||||||||||||||| Sbjct: 43 tccgattagcgtattaatctgagaagctctg 13 >GNBP2-RA feature: mRNA loc=3L:complement(18622351..18622854,18622927..18622983, 18623048..18623361,18623424..18623856,18624098..18624154, 18624217..18624292);ID=FBan0004144;gene_id=FBgn0040322;ge ne_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1441 Length = 1441 Score = 2637 bits (1330), Expect = 0.0 Identities = 1333/1334 (99%) Strand = Plus / Minus Query: 1 acaaatgccacagctactccgcataaaccctaacatagtccatgaccatggcgctgtgcc 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1408 acaaatgccacagctactccgcataaaccctaacatagtctatgaccatggcgctgtgcc 1349 Query: 61 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1348 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 1289 Query: 121 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1288 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 1229 Query: 181 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1228 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 1169 Query: 241 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1168 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 1109 Query: 301 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1108 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 1049 Query: 361 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1048 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 989 Query: 421 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 988 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 929 Query: 481 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 928 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 869 Query: 541 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 868 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 809 Query: 601 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 808 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 749 Query: 661 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 748 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 689 Query: 721 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 688 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 629 Query: 781 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 628 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 569 Query: 841 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 509 Query: 901 agatcagttcaccctggcaagtatggcgtccattgctcactatcgtttgggcggccttgc 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 agatcagttcaccctggcaagtatggcgtccattgctcactatcgtttgggcggccttgc 449 Query: 961 agcgtttggcttgctgtgcaggagctaggtatgcctggcactcgccctctcctgtaagga 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 agcgtttggcttgctgtgcaggagctaggtatgcctggcactcgccctctcctgtaagga 389 Query: 1021 atgttatgcctcgcgagctagagtctttggtggtcagtagccgggtgtttatgatcaccc 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 atgttatgcctcgcgagctagagtctttggtggtcagtagccgggtgtttatgatcaccc 329 Query: 1081 tggtttcactcttttcgaagatttcctcattgaactgcaccagcattgatatctgcagct 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 tggtttcactcttttcgaagatttcctcattgaactgcaccagcattgatatctgcagct 269 Query: 1141 tgtcgttgttctgcagactcatcttttgcttggagacccaacttccgttcactgcctccg 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 tgtcgttgttctgcagactcatcttttgcttggagacccaacttccgttcactgcctccg 209 Query: 1201 tgatgtagtccattagagccgggcaggtgtcgtcaatttggaacatgtagaacacccgct 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 tgatgtagtccattagagccgggcaggtgtcgtcaatttggaacatgtagaacacccgct 149 Query: 1261 gtatgccaggctcatctggtatggacacttcgaatccttcatcctttagcatttcaaaat 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 gtatgccaggctcatctggtatggacacttcgaatccttcatcctttagcatttcaaaat 89 Query: 1321 taatactgggtact 1334 |||||||||||||| Sbjct: 88 taatactgggtact 75 >GNBP2-RD feature: mRNA loc=3L:complement(18622351..18622854,18622927..18622983, 18623048..18623361,18623424..18623856, 18624258..18624292);ID=FBan0004144;gene_id=FBgn0040322;ge ne_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1343 Length = 1343 Score = 2520 bits (1271), Expect = 0.0 Identities = 1274/1275 (99%) Strand = Plus / Minus Query: 1 acaaatgccacagctactccgcataaaccctaacatagtccatgaccatggcgctgtgcc 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1310 acaaatgccacagctactccgcataaaccctaacatagtctatgaccatggcgctgtgcc 1251 Query: 61 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1250 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 1191 Query: 121 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1190 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 1131 Query: 181 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1130 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 1071 Query: 241 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1070 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 1011 Query: 301 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1010 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 951 Query: 361 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 950 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 891 Query: 421 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 890 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 831 Query: 481 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 830 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagataggggaaaagcc 771 Query: 541 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 770 aatcccccttgggcaacttggcgcgcacgacgattttgccaaatttgaaactgaaagagt 711 Query: 601 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 710 ttctggtgtgaatttgggcggagaaaactggaggcttgatgctatagaagatgccgtgcg 651 Query: 661 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 650 caatgttgcactcctgttccggactttcgacggccgtacagcgatctcccagtttgaagc 591 Query: 721 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 590 tgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgccttccttcacaa 531 Query: 781 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 530 agcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgtggtacatgcgct 471 Query: 841 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 gtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgagaagttgtcctcaa 411 Query: 901 agatcagttcaccctggcaagtatggcgtccattgctcactatcgtttgggcggccttgc 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 410 agatcagttcaccctggcaagtatggcgtccattgctcactatcgtttgggcggccttgc 351 Query: 961 agcgtttggcttgctgtgcaggagctaggtatgcctggcactcgccctctcctgtaagga 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 agcgtttggcttgctgtgcaggagctaggtatgcctggcactcgccctctcctgtaagga 291 Query: 1021 atgttatgcctcgcgagctagagtctttggtggtcagtagccgggtgtttatgatcaccc 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 atgttatgcctcgcgagctagagtctttggtggtcagtagccgggtgtttatgatcaccc 231 Query: 1081 tggtttcactcttttcgaagatttcctcattgaactgcaccagcattgatatctgcagct 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 tggtttcactcttttcgaagatttcctcattgaactgcaccagcattgatatctgcagct 171 Query: 1141 tgtcgttgttctgcagactcatcttttgcttggagacccaacttccgttcactgcctccg 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 170 tgtcgttgttctgcagactcatcttttgcttggagacccaacttccgttcactgcctccg 111 Query: 1201 tgatgtagtccattagagccgggcaggtgtcgtcaatttggaacatgtagaacacccgct 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110 tgatgtagtccattagagccgggcaggtgtcgtcaatttggaacatgtagaacacccgct 51 Query: 1261 gtatgccaggctcat 1275 ||||||||||||||| Sbjct: 50 gtatgccaggctcat 36 >GNBP2-RC feature: mRNA loc=3L:complement(18622352..18622854,18622927..18623361, 18623424..18623856, 18624217..18624273);ID=FBan0004144;gene_id=FBgn0040322;ge ne_sym=GNBP2;sym=CG4144;scaffold=AE003519;len=1428 Length = 1428 Score = 1485 bits (749), Expect = 0.0 Identities = 749/749 (100%) Strand = Plus / Minus Query: 529 aggggaaaagccaatcccccttgggcaacttggcgcgcacgacgattttgccaaatttga 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 804 aggggaaaagccaatcccccttgggcaacttggcgcgcacgacgattttgccaaatttga 745 Query: 589 aactgaaagagtttctggtgtgaatttgggcggagaaaactggaggcttgatgctataga 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 744 aactgaaagagtttctggtgtgaatttgggcggagaaaactggaggcttgatgctataga 685 Query: 649 agatgccgtgcgcaatgttgcactcctgttccggactttcgacggccgtacagcgatctc 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 684 agatgccgtgcgcaatgttgcactcctgttccggactttcgacggccgtacagcgatctc 625 Query: 709 ccagtttgaagctgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgc 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 ccagtttgaagctgccatcggtgacctcggtggcgatagtgggaacgatatggagttcgc 565 Query: 769 cttccttcacaaagcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgt 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 cttccttcacaaagcagttgcgtgcggcatcgtcgaaggccaccagctcctcctccacgt 505 Query: 829 ggtacatgcgctgtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgaga 888 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 504 ggtacatgcgctgtcggatgtcatgcttccaggtggtcttgttcagctgcgcctccgaga 445 Query: 889 agttgtcctcaaagatcagttcaccctggcaagtatggcgtccattgctcactatcgttt 948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 agttgtcctcaaagatcagttcaccctggcaagtatggcgtccattgctcactatcgttt 385 Query: 949 gggcggccttgcagcgtttggcttgctgtgcaggagctaggtatgcctggcactcgccct 1008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 384 gggcggccttgcagcgtttggcttgctgtgcaggagctaggtatgcctggcactcgccct 325 Query: 1009 ctcctgtaaggaatgttatgcctcgcgagctagagtctttggtggtcagtagccgggtgt 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 ctcctgtaaggaatgttatgcctcgcgagctagagtctttggtggtcagtagccgggtgt 265 Query: 1069 ttatgatcaccctggtttcactcttttcgaagatttcctcattgaactgcaccagcattg 1128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 ttatgatcaccctggtttcactcttttcgaagatttcctcattgaactgcaccagcattg 205 Query: 1129 atatctgcagcttgtcgttgttctgcagactcatcttttgcttggagacccaacttccgt 1188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 atatctgcagcttgtcgttgttctgcagactcatcttttgcttggagacccaacttccgt 145 Query: 1189 tcactgcctccgtgatgtagtccattagagccgggcaggtgtcgtcaatttggaacatgt 1248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144 tcactgcctccgtgatgtagtccattagagccgggcaggtgtcgtcaatttggaacatgt 85 Query: 1249 agaacacccgctgtatgccaggctcatct 1277 ||||||||||||||||||||||||||||| Sbjct: 84 agaacacccgctgtatgccaggctcatct 56 Score = 1039 bits (524), Expect = 0.0 Identities = 527/528 (99%) Strand = Plus / Minus Query: 1 acaaatgccacagctactccgcataaaccctaacatagtccatgaccatggcgctgtgcc 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1396 acaaatgccacagctactccgcataaaccctaacatagtctatgaccatggcgctgtgcc 1337 Query: 61 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1336 tgccccaagtgggggcccaagcatcgcggtgctgccaaaatgagagggcagcccggggtt 1277 Query: 121 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 ccctgtttttataaggcttgacatccttggccaatagactatcgtcgaagttcaggaagc 1217 Query: 181 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1216 cgcccaccgtaacgccaaagataataaagcacttctcgttgaagaatggcagtccgtcgt 1157 Query: 241 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1156 acagctccccataaacctcatcgtctaccattagggtaatcttatccctctgccagatca 1097 Query: 301 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 tggtgtagttgtgaaagtcgtccccgtagtggctgttgcttatcttgtccttgaggaact 1037 Query: 361 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 gtactgcattgccgtggtgccaaaccacaccgccgccatataagtggtttccggagatat 977 Query: 421 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 catctccttgtttcgtcctcaaattggcattgccacgggcatatgcaattctcaattgct 917 Query: 481 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagat 528 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 tggcatagtgggtctccgcgtaagtggaaaccggttggagcatcagat 869 >CG15649-RA feature: mRNA loc=2R:complement(16016763..16016938,16017002..16017178, 16017452..16017475);ID=FBan0015649;gene_id=FBgn0034563;ge ne_sym=CG15649;sym=CG15649;scaffold=AE003452;len=377 Length = 377 Score = 745 bits (376), Expect = 0.0 Identities = 376/376 (100%) Strand = Plus / Plus Query: 1532 ctgagatttgtctttatggccgctttaccgctgctgctgttgcttctacttcagtttagt 1591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctgagatttgtctttatggccgctttaccgctgctgctgttgcttctacttcagtttagt 60 Query: 1592 ccacctgcagatggctttatcattcgactgattacggagacactgcagaataacgtggct 1651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ccacctgcagatggctttatcattcgactgattacggagacactgcagaataacgtggct 120 Query: 1652 ggtgagccggttcttcacgagcggacttcttgggactttgatccggaggcggccaagagg 1711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggtgagccggttcttcacgagcggacttcttgggactttgatccggaggcggccaagagg 180 Query: 1712 gccagatcgctgtactacgagaagaacggattccgctcgtccaaattcatcgagcgactg 1771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gccagatcgctgtactacgagaagaacggattccgctcgtccaaattcatcgagcgactg 240 Query: 1772 ggcgttggtctggatgggcggcacgaggagcggcgggcggagcaaggacatcgcgatgtg 1831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggcgttggtctggatgggcggcacgaggagcggcgggcggagcaaggacatcgcgatgtg 300 Query: 1832 ggacgactgaatggggaacacaatgtgaactatccgcctccaccggcttagccataaata 1891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ggacgactgaatggggaacacaatgtgaactatccgcctccaccggcttagccataaata 360 Query: 1892 attatgatttaaattt 1907 |||||||||||||||| Sbjct: 361 attatgatttaaattt 376 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 51,623 Number of Sequences: 18737 Number of extensions: 51623 Number of successful extensions: 2680 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2671 Number of HSP's gapped (non-prelim): 9 length of query: 1926 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1908 effective length of database: 40,933,732 effective search space: 78101560656 effective search space used: 78101560656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070527 AY070527|AY070527 Drosophila melanogaster GM03761 full length cDNA. (2764 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR33328-RA feature: ncRNA loc=3R:complement(9463445..9466209);ID... 1499 0.0 >CR33328-RA feature: ncRNA loc=3R:complement(9463445..9466209);ID=FBan0033328;gene_i d=FBgn0053328;gene_sym=CR33328;sym=CR33328;type=ncRNA;sca ffold=AE003701;len=2765 Length = 2765 Score = 1499 bits (756), Expect = 0.0 Identities = 793/811 (97%) Strand = Plus / Plus Query: 825 gatgtttaaatgtgtaaacaaannnnnnngatataaacaaaatttttgtatacctttaca 884 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 827 gatgtttaaatgtgtaaacaaatttttttgatataaacaaaatttttgtatacctttaca 886 Query: 885 tatacttaccatacaattatagcaataattttgtgcccccactttatattaaaaccctaa 944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 887 tatacttaccatacaattatagcaataattttgtgcccccactttatattaaaaccctaa 946 Query: 945 taacaatatattcttagactttataatttcctattccgttactactctacaactacaact 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 947 taacaatatattcttagactttataatttcctattccgttactactctacaactacaact 1006 Query: 1005 tgaaattctaaaactaaccaaccagaccacaaaaataaaagtgcggggagctgtagctta 1064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 tgaaattctaaaactaaccaaccagaccacaaaaataaaagtgcggggagctgtagctta 1066 Query: 1065 agcaccgagttagatctgttgaataaattaatgccaagtacgcagatcgggtgtttcggt 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 agcaccgagttagatctgttgaataaattaatgccaagtacgcagatcgggtgtttcggt 1126 Query: 1125 tcccactccccgcatttgtacccgttaattatgtaatattactttcgtaactatgatttt 1184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1127 tcccactccccgcatttgtacccgttaattatgtaatattactttcgtaactatgatttt 1186 Query: 1185 tgaacatatttatatacgattatatgattgtaataccgaattttccgatgtttcgcctca 1244 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1187 tgaacatatttatatacgattatatgattgtaaaaccgaattttccgatgtttcgcctca 1246 Query: 1245 caaaaacgnnnnnnnnnngaaatcaaactaaacgaacccaaaacataagtaaaagaaacc 1304 |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1247 caaaaacgaaaaaaaaaagaaatcaaactaaacgaacccaaaacataagtaaaagaaacc 1306 Query: 1305 ccaatgagagttcaactcaaaacacagccaccaaccacccaaaagcgaatatccaaaaac 1364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1307 ccaatgagagttcaactcaaaacacagccaccaaccacccaaaagcgaatatccaaaaac 1366 Query: 1365 gatcgcaagctgcgcgcctttgtcttgtccaagcttctcgcaagcggttaaccgattgcc 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1367 gatcgcaagctgcgcgcctttgtcttgtccaagcttctcgcaagcggttaaccgattgcc 1426 Query: 1425 cggccgacccggtaaccgatacaaccggtgaccgagggtccttggtgagaacaacaccag 1484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1427 cggccgacccggtaaccgatacaaccggtgaccgagggtccttggtgagaacaacaccag 1486 Query: 1485 tagagccactatatccatctactatccaccgacatccgaacaaagcaatcaatcaggcaa 1544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1487 tagagccactatatccatctactatccaccgacatccgaacaaagcaatcaatcaggcaa 1546 Query: 1545 tcaagcaaccaagcgaccagagatcgagcaatcgagcgatccgccatgcaaaaccgcacc 1604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1547 tcaagcaaccaagcgaccagagatcgagcaatcgagcgatccgccatgcaaaaccgcacc 1606 Query: 1605 aacagtgttaacttttcacttaactgtaacg 1635 ||||||||||||||||||||||||||||||| Sbjct: 1607 aacagtgttaacttttcacttaactgtaacg 1637 Score = 1011 bits (510), Expect = 0.0 Identities = 524/531 (98%) Strand = Plus / Plus Query: 1760 gaagaaagatgaaatgataatataatggaaccactaaagtaatgaatgaattaaaatatt 1819 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1761 gaagaaagatgaaatgataatataatggaaccactaaagtaatgaatgaattaaaatatt 1820 Query: 1820 gtcataccgattctgagacaactcttaagctacaaatccagttttcttgtttttaacaac 1879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1821 gtcataccgattctgagacaactcttaagctacaaatccagttttcttgtttttaacaac 1880 Query: 1880 agctacaacaacaacagaaatgaacacgaagagtaattattataatcattatattaactc 1939 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1881 agctacaacaacaacagaaatgaacacgaagagtaattattataatcattatattaactc 1940 Query: 1940 gagagtataaagtaaaatttgttgactatttgcatttgtttttgtttttcgcaaaacgtt 1999 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1941 gagagtataaagtaaaatttgttgactatttgcatttgtttttgtttttcgcaaaacgtt 2000 Query: 2000 ttctatgacacgcaaaataataatatattcgcgacagaccactccgcatcctcatccccc 2059 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2001 ttctatgacacgcaaaataataatatattcgcgacagaccactccgcatcctcatccccc 2060 Query: 2060 ttcccttcccccttgaccagccttgtaattcccgaagatccttcaatgggagtgatataa 2119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2061 ttcccttcccccttgaccagccttgtaattcccgaagatccttcaatgggagtgatataa 2120 Query: 2120 aagaaaattcacgaaaaattcaaaatgatcattttattactttttgctgaggtgagacat 2179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2121 aagaaaattcacgaaaaattcaaaatgatcattttattactttttgctgaggtgagacat 2180 Query: 2180 tcaaaatacacacacacaagagcagcaaatgaattcacaaannnnnnnggcaaaaacctt 2239 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2181 tcaaaatacacacacacaagagcagcaaatgaattcacaaatttttttggcaaaaacctt 2240 Query: 2240 acaaaattatttaccgaatattttcaatcgaacgtttacaaagtaattaat 2290 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2241 acaaaattatttaccgaatattttcaatcgaacgtttacaaagtaattaat 2291 Score = 722 bits (364), Expect = 0.0 Identities = 364/364 (100%) Strand = Plus / Plus Query: 323 gaaagaaagaaaaacgattcataaaaacacacttcgtcaattttagtaattttaattcaa 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 gaaagaaagaaaaacgattcataaaaacacacttcgtcaattttagtaattttaattcaa 384 Query: 383 gcatatatacatatataattttttcttatggtttcacatacacaagcattgctaatcgca 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 gcatatatacatatataattttttcttatggtttcacatacacaagcattgctaatcgca 444 Query: 443 aatgtatatataaatacctcttataattcgtatatctttgaatttgaaatttagcagaac 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 aatgtatatataaatacctcttataattcgtatatctttgaatttgaaatttagcagaac 504 Query: 503 cttgaaatgaactttttgctaataattatcctatcaaatgttgtcaatgtgcgtcgacaa 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 cttgaaatgaactttttgctaataattatcctatcaaatgttgtcaatgtgcgtcgacaa 564 Query: 563 tttgactgtataccaattatatatacatttgtacatttacatacacctttaatcataaac 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 tttgactgtataccaattatatatacatttgtacatttacatacacctttaatcataaac 624 Query: 623 tttgagtaaattgttttacaaagaaattgcatgtttctcaatgtttttagcaagttgtct 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 tttgagtaaattgttttacaaagaaattgcatgtttctcaatgtttttagcaagttgtct 684 Query: 683 gtat 686 |||| Sbjct: 685 gtat 688 Score = 561 bits (283), Expect = e-158 Identities = 286/287 (99%) Strand = Plus / Plus Query: 19 gcagcctcattcgttagatcgttcttttatttgctttatttgcatttccgctgcactttc 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 gcagcctcattcgttagatcgttcttttatttgctttatttgcatttccgctgcactttc 78 Query: 79 ttgaccaaaacgtaacgtaatgtccgaagcaatccatttttgaggcttgtcttcagttgc 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 ttgaccaaaacgtaacgtaatgtccgaagcaatccatttttgaggcttgtcttcagttgc 138 Query: 139 accgctagcgcattgcggcattctgcatgttcatacgttgattccaggataaagaaccac 198 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 139 accgctagcgcattgcggcattctgcatgttcatacgttgattccaggataaaaaaccac 198 Query: 199 aaacaaacaactaactaacttactgaacaacgacaagtaattacaactgcaatagcaaca 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 aaacaaacaactaactaacttactgaacaacgacaagtaattacaactgcaatagcaaca 258 Query: 259 tcaacaacatcttaattgtagcagtacaaaaatgcaacttttccaac 305 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 tcaacaacatcttaattgtagcagtacaaaaatgcaacttttccaac 305 Score = 400 bits (202), Expect = e-110 Identities = 202/202 (100%) Strand = Plus / Plus Query: 2506 acgaagcgaaataacaaccaccaatccaatcgagaaccgcatgtatgtgtgagcgccgcc 2565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2507 acgaagcgaaataacaaccaccaatccaatcgagaaccgcatgtatgtgtgagcgccgcc 2566 Query: 2566 ttgcgccattttcctcgacatttgcaagaggaaagcgagtgaaaattgttttttaaattt 2625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2567 ttgcgccattttcctcgacatttgcaagaggaaagcgagtgaaaattgttttttaaattt 2626 Query: 2626 ttattgtgtaccagcaaccaacagctacaacaatcgacaactacacatgttagagcaaca 2685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2627 ttattgtgtaccagcaaccaacagctacaacaatcgacaactacacatgttagagcaaca 2686 Query: 2686 ttttaaccatcaatcttataat 2707 |||||||||||||||||||||| Sbjct: 2687 ttttaaccatcaatcttataat 2708 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 72,169 Number of Sequences: 18737 Number of extensions: 72169 Number of successful extensions: 2713 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2696 Number of HSP's gapped (non-prelim): 15 length of query: 2764 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2745 effective length of database: 40,914,995 effective search space: 112311661275 effective search space used: 112311661275 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070791 AY070791|AY070791 Drosophila melanogaster AT14266 full length cDNA. (781 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13980-RA feature: mRNA loc=3R:join(23184232..23184504,23184566... 535 e-151 >CG13980-RA feature: mRNA loc=3R:join(23184232..23184504,23184566..23184686, 23185724..23186067);ID=FBan0013980;gene_id=FBgn0039514;g ene_sym=CG13980;sym=CG13980;scaffold=AE003760;len=738 Length = 738 Score = 535 bits (270), Expect = e-151 Identities = 273/274 (99%) Strand = Plus / Minus Query: 342 cctcctcgtacacctcgttgatgttctggaagttgttggtgccgggacgctggagtcctt 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 cctcctcgtacacctcgttgatgttctggaagttgttggtgccgggacgctggagtcctt 215 Query: 402 taagcgtctcgtagaggaagagctcgaagttcttaaacgtgtactcgctgaagttgtagc 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 taagcgtctcgtagaggaagagctcgaagttcttaaacgtgtactcgctgaagttgtagc 155 Query: 462 gcctgagtcgcgtgcccgtttcgccgcccagaaggacacaggacttgtggtagtcgtcca 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 gcctgagtcgcgtgcccgtttcgccgcccagaaggacacaggacttgtggtagtcgtcca 95 Query: 522 ccgcccgcttcaccagcaccgcctcgttcagcttactggagcgaatctgcagcgacttga 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94 ccgcccgcttcaccagcaccgcctcgttcagcttactggagcgaatctgcagcgacttga 35 Query: 582 gccccaggagatgctggaagatcttgcgctccat 615 || ||||||||||||||||||||||||||||||| Sbjct: 34 gctccaggagatgctggaagatcttgcgctccat 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,336 Number of Sequences: 18737 Number of extensions: 18336 Number of successful extensions: 477 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 475 Number of HSP's gapped (non-prelim): 2 length of query: 781 length of database: 41,270,998 effective HSP length: 17 effective length of query: 764 effective length of database: 40,952,469 effective search space: 31287686316 effective search space used: 31287686316 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070816 AY070816|AY070816 Drosophila melanogaster AT24650 full length cDNA. (578 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,768 Number of Sequences: 18737 Number of extensions: 10768 Number of successful extensions: 212 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 212 Number of HSP's gapped (non-prelim): 0 length of query: 578 length of database: 41,270,998 effective HSP length: 17 effective length of query: 561 effective length of database: 40,952,469 effective search space: 22974335109 effective search space used: 22974335109 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070819 AY070819|AY070819 Drosophila melanogaster AT25392 full insert cDNA. (1107 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,780 Number of Sequences: 18737 Number of extensions: 23780 Number of successful extensions: 646 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 646 Number of HSP's gapped (non-prelim): 0 length of query: 1107 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1089 effective length of database: 40,933,732 effective search space: 44576834148 effective search space used: 44576834148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070828 AY070828|AY070828 Drosophila melanogaster AT28425 full length cDNA. (621 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7046-RA feature: mRNA loc=3R:18309537..18310126;ID=FBan0007046... 521 e-147 CG7045-RA feature: mRNA loc=3R:18308207..18308764;ID=FBan0007045... 387 e-107 >CG7046-RA feature: mRNA loc=3R:18309537..18310126;ID=FBan0007046;gene_id=FBgn003 8979;gene_sym=CG7046;sym=CG7046;scaffold=AE003739;len=59 0 Length = 590 Score = 521 bits (263), Expect = e-147 Identities = 263/263 (100%) Strand = Plus / Plus Query: 97 cgataaagatgtcagactacggagcacgccccaaaaaacccatgagcgccttcatgttgt 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 cgataaagatgtcagactacggagcacgccccaaaaaacccatgagcgccttcatgttgt 156 Query: 157 ggatgaattccaccgggcgcaagaacataagagcggagcatcccgattttagtgtccaag 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 ggatgaattccaccgggcgcaagaacataagagcggagcatcccgattttagtgtccaag 216 Query: 217 aagtgtctgtgaagggcggtgagatgtggcgagccatggccgatgagcacaagatcgtgt 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 aagtgtctgtgaagggcggtgagatgtggcgagccatggccgatgagcacaagatcgtgt 276 Query: 277 ggcaggagtcggccagcaaggcaatggccgagtacaaggagaagttggagaagtggaatg 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 ggcaggagtcggccagcaaggcaatggccgagtacaaggagaagttggagaagtggaatg 336 Query: 337 ccttcaaggagcaccagacggag 359 ||||||||||||||||||||||| Sbjct: 337 ccttcaaggagcaccagacggag 359 Score = 418 bits (211), Expect = e-116 Identities = 227/231 (98%), Gaps = 1/231 (0%) Strand = Plus / Plus Query: 373 agtcgtttccccatatctatgaagctccgttgtcctctcgattctcaaaaactaaccaaa 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 agtcgtttccccatatctatgaagctccgttgtcctctcgattctcaaaaactaaccaaa 417 Query: 433 ggccaaccctttttgtgtacgacagcaaggatgaagcaatggctccgatctgcaggacgt 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 ggccaaccctttttgtgtacgacagcaaggatgaagcaatggctccgatctgcaggacgt 477 Query: 493 gcttctcaaaggccaagtgctttcactaaacgtttgctaaattattgtttagtcac-atc 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 478 gcttctcaaaggccaagtgctttcactaaacgtttgctaaattattgtttagtcacaaac 537 Query: 552 caccagcaaaagttgcgagatgttgttcaataaatttaaatatttacattc 602 ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 538 aaccagcaaaagttgcgagatgttgttcaataaatttaaatatttatattc 588 >CG7045-RA feature: mRNA loc=3R:18308207..18308764;ID=FBan0007045;gene_id=FBgn003 8978;gene_sym=CG7045;sym=CG7045;scaffold=AE003739;len=55 8 Length = 558 Score = 387 bits (195), Expect = e-107 Identities = 228/239 (95%) Strand = Plus / Plus Query: 97 cgataaagatgtcagactacggagcacgccccaaaaaacccatgagcgccttcatgttgt 156 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 91 cgataaagatgtcagactgcggagcgcgccccaaaaaacccatgagcgccttcatgttgt 150 Query: 157 ggatgaattccaccgggcgcaagaacataagagcggagcatcccgattttagtgtccaag 216 ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| Sbjct: 151 ggatgaattccaccgggcggaagcacataaaagcggagcatcccgattttagtgtccaag 210 Query: 217 aagtgtctgtgaagggcggtgagatgtggcgagccatggccgatgagcacaagatcgtgt 276 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct: 211 aagtgtctgtgaagggcggagagatgtggcgagccatggccgatgaggacaagatcgtgt 270 Query: 277 ggcaggagtcggccagcaaggcaatggccgagtacaaggagaagttggagaagtggaat 335 ||||||||||||||| || |||||||||||||||||||||||||||| || |||||||| Sbjct: 271 ggcaggagtcggccaccacggcaatggccgagtacaaggagaagttgaagcagtggaat 329 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,287 Number of Sequences: 18737 Number of extensions: 14287 Number of successful extensions: 351 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 344 Number of HSP's gapped (non-prelim): 6 length of query: 621 length of database: 41,270,998 effective HSP length: 17 effective length of query: 604 effective length of database: 40,952,469 effective search space: 24735291276 effective search space used: 24735291276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070834 AY070834|AY070834 Drosophila melanogaster GH05702 full length cDNA. (1542 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 31,426 Number of Sequences: 18737 Number of extensions: 31426 Number of successful extensions: 739 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 739 Number of HSP's gapped (non-prelim): 0 length of query: 1542 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1524 effective length of database: 40,933,732 effective search space: 62383007568 effective search space used: 62383007568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070843 AY070843|AY070843 Drosophila melanogaster GH23165 full insert cDNA. (941 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,590 Number of Sequences: 18737 Number of extensions: 13590 Number of successful extensions: 310 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 310 Number of HSP's gapped (non-prelim): 0 length of query: 941 length of database: 41,270,998 effective HSP length: 18 effective length of query: 923 effective length of database: 40,933,732 effective search space: 37781834636 effective search space used: 37781834636 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070845 AY070845|AY070845 Drosophila melanogaster GH26692 full length cDNA. (1674 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 50,909 Number of Sequences: 18737 Number of extensions: 50909 Number of successful extensions: 1394 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1394 Number of HSP's gapped (non-prelim): 0 length of query: 1674 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1656 effective length of database: 40,933,732 effective search space: 67786260192 effective search space used: 67786260192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070848 AY070848|AY070848 Drosophila melanogaster GM02923 full length cDNA. (1035 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,586 Number of Sequences: 18737 Number of extensions: 19586 Number of successful extensions: 432 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 432 Number of HSP's gapped (non-prelim): 0 length of query: 1035 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1017 effective length of database: 40,933,732 effective search space: 41629605444 effective search space used: 41629605444 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070850 AY070850|AY070850 Drosophila melanogaster GM03205 full length cDNA. (3228 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 78,319 Number of Sequences: 18737 Number of extensions: 78319 Number of successful extensions: 1823 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1823 Number of HSP's gapped (non-prelim): 0 length of query: 3228 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3209 effective length of database: 40,914,995 effective search space: 131296218955 effective search space used: 131296218955 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070851 AY070851|AY070851 Drosophila melanogaster GM03914 full length cDNA. (1046 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,180 Number of Sequences: 18737 Number of extensions: 25180 Number of successful extensions: 634 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 634 Number of HSP's gapped (non-prelim): 0 length of query: 1046 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1028 effective length of database: 40,933,732 effective search space: 42079876496 effective search space used: 42079876496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070853 AY070853|AY070853 Drosophila melanogaster GM05844 full insert cDNA. (1394 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,644 Number of Sequences: 18737 Number of extensions: 27644 Number of successful extensions: 682 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 682 Number of HSP's gapped (non-prelim): 0 length of query: 1394 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1376 effective length of database: 40,933,732 effective search space: 56324815232 effective search space used: 56324815232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070857 AY070857|AY070857 Drosophila melanogaster GM10545 full length cDNA. (1972 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 41,867 Number of Sequences: 18737 Number of extensions: 41867 Number of successful extensions: 1166 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1166 Number of HSP's gapped (non-prelim): 0 length of query: 1972 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1954 effective length of database: 40,933,732 effective search space: 79984512328 effective search space used: 79984512328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070859 AY070859|AY070859 Drosophila melanogaster GM10858 full length cDNA. (1780 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 40,288 Number of Sequences: 18737 Number of extensions: 40288 Number of successful extensions: 1266 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1266 Number of HSP's gapped (non-prelim): 0 length of query: 1780 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1762 effective length of database: 40,933,732 effective search space: 72125235784 effective search space used: 72125235784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070863 AY070863|AY070863 Drosophila melanogaster HL01242 full length cDNA. (1872 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 53,661 Number of Sequences: 18737 Number of extensions: 53661 Number of successful extensions: 1909 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1909 Number of HSP's gapped (non-prelim): 0 length of query: 1872 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1854 effective length of database: 40,933,732 effective search space: 75891139128 effective search space used: 75891139128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070871 AY070871|AY070871 Drosophila melanogaster HL03512 full length cDNA. (1429 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 35,366 Number of Sequences: 18737 Number of extensions: 35366 Number of successful extensions: 1517 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1517 Number of HSP's gapped (non-prelim): 0 length of query: 1429 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1411 effective length of database: 40,933,732 effective search space: 57757495852 effective search space used: 57757495852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY070880 AY070880|AY070880 Drosophila melanogaster LD11885 full length cDNA. (655 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,005 Number of Sequences: 18737 Number of extensions: 18005 Number of successful extensions: 534 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 534 Number of HSP's gapped (non-prelim): 0 length of query: 655 length of database: 41,270,998 effective HSP length: 17 effective length of query: 638 effective length of database: 40,952,469 effective search space: 26127675222 effective search space used: 26127675222 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071257 AY071257|AY071257 Drosophila melanogaster RE29470 full length cDNA. (1116 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15316-RB feature: mRNA loc=X:complement(9160717..9164447,92109... 408 e-113 CG15316-RA feature: mRNA loc=X:complement(9160717..9164447,92109... 408 e-113 >CG15316-RB feature: mRNA loc=X:complement(9160717..9164447,9210983..9211644, 9239069..9239105);ID=FBan0015316;gene_id=FBgn0030133;gene _sym=CG15316;sym=CG15316;scaffold=AE003447;len=4430 Length = 4430 Score = 408 bits (206), Expect = e-113 Identities = 440/513 (85%), Gaps = 5/513 (0%) Strand = Plus / Plus Query: 590 tcaaaatttgcaaaatatggccaaaaaatttaatttccatttttgaacacagtttgattg 649 ||||||||||| ||| |||| ||||||||| |||||| |||||||||||||||||||||| Sbjct: 2644 tcaaaatttgccaaaaatggacaaaaaattaaatttcaatttttgaacacagtttgattg 2703 Query: 650 gaaattttattacgatctcagtgaagtataacattccatattctgacaattatttttaat 709 |||||| ||||||| |||| || |||| ||||||||||||| ||||||||||||||| Sbjct: 2704 gaaattgaattacgaactcaacgaggtatgacattccatattcagacaattatttttaaa 2763 Query: 710 gttgtggcaaaataaatgattatttgatgaccgaaatttggaaaaacagattcagcaaaa 769 |||||| ||||| || ||||||||||| |||||||||| |||||||| |||| || || Sbjct: 2764 gttgtg-caaaaaaactgattatttgaagaccgaaattcggaaaaacggattttgccaag 2822 Query: 770 atgttgatatttacaaacgaaattttctttataacttggctaaaaatggtcacatagatg 829 | ||||||||||||||||| ||||||| | ||||||| |||||||||| ||| || |||| Sbjct: 2823 aagttgatatttacaaacggaattttcgtcataactttgctaaaaatgctcatattgatg 2882 Query: 830 taagaataactgttttgagcagctaattaccattgctaacgatccctattactttttgaa 889 ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| Sbjct: 2883 taagaataactgttttgagcagctaattacccatactaacgatccctatcactttttgaa 2942 Query: 890 ggatttaggaaaattaatttttggatcagttttcgcattttttgtaaggagggtggtcat 949 | ||||| |||||||||||||| ||| | |||| |||||||||||| |||| || | Sbjct: 2943 gttattagggaaattaatttttgggtcaatgttcgaattttttgtaag--gggtaatcgt 3000 Query: 950 caaaatttgcaaaataatg-ccaaaaaatttaatttccatttttgaacacagtttgattg 1008 |||||||||||||| |||| | ||||||| |||| ||||| || | |||||||||||| Sbjct: 3001 caaaatttgcaaaa-aatgacaaaaaaatagaattctcatttgtggatacagtttgattg 3059 Query: 1009 gaaattttattacgagctcagtgaagtatgacattcaatattctgacaattatttttaat 1068 |||||| ||||||| |||| || ||||||||||| |||||| ||||||||||||||| Sbjct: 3060 gaaattgaattacgaactcaacgaggtatgacattccatattcagacaattatttttaaa 3119 Query: 1069 gttgtggcaaaataaatgattttttgatgaccg 1101 |||||| ||||| || ||||| ||||| ||||| Sbjct: 3120 gttgtgccaaaaaaactgattatttgaagaccg 3152 >CG15316-RA feature: mRNA loc=X:complement(9160717..9164447,9210983..9211644, 9234960..9235172);ID=FBan0015316;gene_id=FBgn0030133;gene _sym=CG15316;sym=CG15316;scaffold=AE003447;len=4606 Length = 4606 Score = 408 bits (206), Expect = e-113 Identities = 440/513 (85%), Gaps = 5/513 (0%) Strand = Plus / Plus Query: 590 tcaaaatttgcaaaatatggccaaaaaatttaatttccatttttgaacacagtttgattg 649 ||||||||||| ||| |||| ||||||||| |||||| |||||||||||||||||||||| Sbjct: 2820 tcaaaatttgccaaaaatggacaaaaaattaaatttcaatttttgaacacagtttgattg 2879 Query: 650 gaaattttattacgatctcagtgaagtataacattccatattctgacaattatttttaat 709 |||||| ||||||| |||| || |||| ||||||||||||| ||||||||||||||| Sbjct: 2880 gaaattgaattacgaactcaacgaggtatgacattccatattcagacaattatttttaaa 2939 Query: 710 gttgtggcaaaataaatgattatttgatgaccgaaatttggaaaaacagattcagcaaaa 769 |||||| ||||| || ||||||||||| |||||||||| |||||||| |||| || || Sbjct: 2940 gttgtg-caaaaaaactgattatttgaagaccgaaattcggaaaaacggattttgccaag 2998 Query: 770 atgttgatatttacaaacgaaattttctttataacttggctaaaaatggtcacatagatg 829 | ||||||||||||||||| ||||||| | ||||||| |||||||||| ||| || |||| Sbjct: 2999 aagttgatatttacaaacggaattttcgtcataactttgctaaaaatgctcatattgatg 3058 Query: 830 taagaataactgttttgagcagctaattaccattgctaacgatccctattactttttgaa 889 ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| Sbjct: 3059 taagaataactgttttgagcagctaattacccatactaacgatccctatcactttttgaa 3118 Query: 890 ggatttaggaaaattaatttttggatcagttttcgcattttttgtaaggagggtggtcat 949 | ||||| |||||||||||||| ||| | |||| |||||||||||| |||| || | Sbjct: 3119 gttattagggaaattaatttttgggtcaatgttcgaattttttgtaag--gggtaatcgt 3176 Query: 950 caaaatttgcaaaataatg-ccaaaaaatttaatttccatttttgaacacagtttgattg 1008 |||||||||||||| |||| | ||||||| |||| ||||| || | |||||||||||| Sbjct: 3177 caaaatttgcaaaa-aatgacaaaaaaatagaattctcatttgtggatacagtttgattg 3235 Query: 1009 gaaattttattacgagctcagtgaagtatgacattcaatattctgacaattatttttaat 1068 |||||| ||||||| |||| || ||||||||||| |||||| ||||||||||||||| Sbjct: 3236 gaaattgaattacgaactcaacgaggtatgacattccatattcagacaattatttttaaa 3295 Query: 1069 gttgtggcaaaataaatgattttttgatgaccg 1101 |||||| ||||| || ||||| ||||| ||||| Sbjct: 3296 gttgtgccaaaaaaactgattatttgaagaccg 3328 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,728 Number of Sequences: 18737 Number of extensions: 27728 Number of successful extensions: 687 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 659 Number of HSP's gapped (non-prelim): 26 length of query: 1116 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1098 effective length of database: 40,933,732 effective search space: 44945237736 effective search space used: 44945237736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071389 AY071389|AY071389 Drosophila melanogaster RE44177 full length cDNA. (1333 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 29,068 Number of Sequences: 18737 Number of extensions: 29068 Number of successful extensions: 611 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 611 Number of HSP's gapped (non-prelim): 0 length of query: 1333 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1315 effective length of database: 40,933,732 effective search space: 53827857580 effective search space used: 53827857580 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071421 AY071421|AY071421 Drosophila melanogaster RE50045 full length cDNA. (1360 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31771-RA feature: mRNA loc=2L:complement(14021995..14022591,14... 444 e-124 >CG31771-RA feature: mRNA loc=2L:complement(14021995..14022591,14022870..14022974, 14025073..14025316);ID=FBan0031771;gene_id=FBgn0028873;g ene_sym=CG31771;sym=CG31771;scaffold=AE003642;len=946 Length = 946 Score = 444 bits (224), Expect = e-124 Identities = 224/224 (100%) Strand = Plus / Minus Query: 1 aatgctgcacgggcatcgggctcagttggtgttccggtttcgggttgtgctgtcagttgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 aatgctgcacgggcatcgggctcagttggtgttccggtttcgggttgtgctgtcagttgc 559 Query: 61 ctttttgcacagcggctgagcgattgagcgattgaacgattgaacggttggacggctgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 ctttttgcacagcggctgagcgattgagcgattgaacgattgaacggttggacggctgag 499 Query: 121 cgctggagcggttgagagtgtgccatcggagccggagagtcctaacgcgttgcccgtggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 cgctggagcggttgagagtgtgccatcggagccggagagtcctaacgcgttgcccgtggc 439 Query: 181 ctgtgtccgcatccgtatccgtatctccgtgcgtctctctccgg 224 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 ctgtgtccgcatccgtatccgtatctccgtgcgtctctctccgg 395 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 29,457 Number of Sequences: 18737 Number of extensions: 29457 Number of successful extensions: 749 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 746 Number of HSP's gapped (non-prelim): 1 length of query: 1360 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1342 effective length of database: 40,933,732 effective search space: 54933068344 effective search space used: 54933068344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071449 AY071449|AY071449 Drosophila melanogaster RE53348 full length cDNA. (1751 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14830-RA feature: mRNA loc=3L:complement(7210241..7211147,7211... 1156 0.0 >CG14830-RA feature: mRNA loc=3L:complement(7210241..7211147,7211209..7211637, 7211705..7211825,7222478..7222624, 7223272..7223446);ID=FBan0014830;gene_id=FBgn0035755;gene _sym=CG14830;sym=CG14830;scaffold=AE003559;len=1779 Length = 1779 Score = 1156 bits (583), Expect = 0.0 Identities = 586/587 (99%) Strand = Plus / Minus Query: 173 aggatcccctttcatcaaaccgcatatgtatgtacatacatacatatgtacatatgcata 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456 aggatcccctttcatcaaaccgcatatgtatgtacatacatacatatgtacatatgcata 1397 Query: 233 acaatcagtatcgctggctctcgcgatccgagtatttgccactcagcttgctaaccgaat 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1396 acaatcagtatcgctggctctcgcgatccgagtatttgccactcagcttgctaaccgaat 1337 Query: 293 agcgatccgagtaggcatcgtacttgtccgccttgtagttgatctcctgcggcgtgtatc 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1336 agcgatccgagtaggcatcgtacttgtccgccttgtagttgatctcctgcggcgtgtatc 1277 Query: 353 cgatattcttctgccagtgccgcgtccagtagagatcctcgttgcgcacctgcgatggcg 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 cgatattcttctgccagtgccgcgtccagtagagatcctcgttgcgcacctgcgatggcg 1217 Query: 413 tcttcgcatcccggaacacgtacacacagtagatcatgcagccgattagcgtgaggaagc 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1216 tcttcgcatcccggaacacgtacacacagtagatcatgcagccgattagcgtgaggaagc 1157 Query: 473 cgaagaccaggaacacaattcccagtatccacacgtacagtggctcataggactgcacca 532 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1156 cgaagaccaggaacacaattcccagtatccacacgtacagtggctcatagaactgcacca 1097 Query: 533 caatgacgaatcctagcgtcaccaggatcaggcccaagttgagcaacagcatcagacagc 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 caatgacgaatcctagcgtcaccaggatcaggcccaagttgagcaacagcatcagacagc 1037 Query: 593 acacgcccttgacattggggcaaaatggattcggcgcggacatggtttccactttggcgc 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 acacgcccttgacattggggcaaaatggattcggcgcggacatggtttccactttggcgc 977 Query: 653 ctcgccgagtcgtcgagcgcgcactgcgtccggttttggccgtactggccacggagtaaa 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 ctcgccgagtcgtcgagcgcgcactgcgtccggttttggccgtactggccacggagtaaa 917 Query: 713 cactccgtggagctcctcgcgacactggacgctgactgtagcgactg 759 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 cactccgtggagctcctcgcgacactggacgctgactgtagcgactg 870 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Minus Query: 818 ctgatctcggagggcgccttgtaggcggcactggtcacatagatgtcgctgccggcgtca 877 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 872 ctgatctcggagggcgccttgtaggcggcactggtcacatagatgtcgctgccggcgtca 813 Query: 878 ccagcctggtcatagctcagggcggacggagcacgcggtggctggcgcgtgggcggcggt 937 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 812 ccagcctggtcatagctcagggcggacggagcacgcggtggctggcgcgtgggcggcggt 753 Query: 938 ccgctgagggagcgaggtcctccgttgtccggcgaactggagaggcccatctgactgtgg 997 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 752 ccgctgagggagcgaggtcctccgttgtccggcgaactggagaggcccatctgactgtgg 693 Query: 998 ctgtagctgctctgcaggtgctgatgctgatggtttccattcgaggatgaggagcgcttc 1057 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 ctgtagctgctctgcaggtgctgatgctgatggtttccattcgaggatgaggagcgcttc 633 Query: 1058 ttgcgcgaaccattgtactgcggcgagatgcgctcgtgggtcaacgtgtactccgaatag 1117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 ttgcgcgaaccattgtactgcggcgagatgcgctcgtgggtcaacgtgtactccgaatag 573 Query: 1118 gtgcgctccgagggcgcccggtgggagtgggtctcatcgccgtcggtggaatagccgcgg 1177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 gtgcgctccgagggcgcccggtgggagtgggtctcatcgccgtcggtggaatagccgcgg 513 Query: 1178 ttcgagtggacgtagggcggatccggagtgaggcgaccgtgcgtggccacataatggctg 1237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 ttcgagtggacgtagggcggatccggagtgaggcgaccgtgcgtggccacataatggctg 453 Query: 1238 cccttcaac 1246 ||||||||| Sbjct: 452 cccttcaac 444 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 44,311 Number of Sequences: 18737 Number of extensions: 44311 Number of successful extensions: 1702 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1693 Number of HSP's gapped (non-prelim): 7 length of query: 1751 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1733 effective length of database: 40,933,732 effective search space: 70938157556 effective search space used: 70938157556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071458 AY071458|AY071458 Drosophila melanogaster RE54004 full length cDNA. (562 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,112 Number of Sequences: 18737 Number of extensions: 11112 Number of successful extensions: 304 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 304 Number of HSP's gapped (non-prelim): 0 length of query: 562 length of database: 41,270,998 effective HSP length: 17 effective length of query: 545 effective length of database: 40,952,469 effective search space: 22319095605 effective search space used: 22319095605 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071578 AY071578|AY071578 Drosophila melanogaster RE63496 full length cDNA. (966 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,177 Number of Sequences: 18737 Number of extensions: 18177 Number of successful extensions: 382 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 382 Number of HSP's gapped (non-prelim): 0 length of query: 966 length of database: 41,270,998 effective HSP length: 18 effective length of query: 948 effective length of database: 40,933,732 effective search space: 38805177936 effective search space used: 38805177936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071598 AY071598|AY071598 Drosophila melanogaster RE65113 full length cDNA. (1062 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,885 Number of Sequences: 18737 Number of extensions: 23885 Number of successful extensions: 548 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 548 Number of HSP's gapped (non-prelim): 0 length of query: 1062 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1044 effective length of database: 40,933,732 effective search space: 42734816208 effective search space used: 42734816208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071642 AY071642|AY071642 Drosophila melanogaster RE68569 full insert cDNA. (2611 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 50,500 Number of Sequences: 18737 Number of extensions: 50500 Number of successful extensions: 1042 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1042 Number of HSP's gapped (non-prelim): 0 length of query: 2611 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2592 effective length of database: 40,914,995 effective search space: 106051667040 effective search space used: 106051667040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071669 AY071669|AY071669 Drosophila melanogaster RH02410 full length cDNA. (3332 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 58,641 Number of Sequences: 18737 Number of extensions: 58641 Number of successful extensions: 1006 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1006 Number of HSP's gapped (non-prelim): 0 length of query: 3332 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3313 effective length of database: 40,914,995 effective search space: 135551378435 effective search space used: 135551378435 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071691 AY071691|AY071691 Drosophila melanogaster RH11383 full insert cDNA. (921 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15295-RA feature: mRNA loc=X:complement(10356715..10358869,103... 1011 0.0 CanB-RA feature: mRNA loc=X:join(5073359..5073441,5073667..50737... 597 e-170 >CG15295-RA feature: mRNA loc=X:complement(10356715..10358869, 10358993..10359125);ID=FBan0015295;gene_id=FBgn0030220;ge ne_sym=CG15295;sym=CG15295;scaffold=AE003451;len=2288 Length = 2288 Score = 1011 bits (510), Expect = 0.0 Identities = 510/510 (100%) Strand = Plus / Plus Query: 8 gagaagtgggagcacatgcgcacgcggctgcagttcaagaacgatgtggagttcgttgcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1768 gagaagtgggagcacatgcgcacgcggctgcagttcaagaacgatgtggagttcgttgcc 1827 Query: 68 taccttttgaacctggcggataacgatacggatcgactgaacaagtgagtattgatttgc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1828 taccttttgaacctggcggataacgatacggatcgactgaacaagtgagtattgatttgc 1887 Query: 128 ttaaaataaattcatttgcattgattgggatgtgccccatatatcaggttatttgtcccc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1888 ttaaaataaattcatttgcattgattgggatgtgccccatatatcaggttatttgtcccc 1947 Query: 188 cttttaaaatcttaaaataattggtaaataatgctttgcatatgcaacaggtatttagaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1948 cttttaaaatcttaaaataattggtaaataatgctttgcatatgcaacaggtatttagaa 2007 Query: 248 gtttgcttagctaccaacaacgcgcaattgaaaagttttaagtgattacacatagttaac 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2008 gtttgcttagctaccaacaacgcgcaattgaaaagttttaagtgattacacatagttaac 2067 Query: 308 acattataataatgatcatacggcagcggaaagcaggaacttataatcattcttatatat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2068 acattataataatgatcatacggcagcggaaagcaggaacttataatcattcttatatat 2127 Query: 368 tttctctcactttaaaatagaaaattatagtttaaatctataaatatattgaatctgcta 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2128 tttctctcactttaaaatagaaaattatagtttaaatctataaatatattgaatctgcta 2187 Query: 428 tggcacgatcccaatcacattaagattccattagaataatactagtaatgaacaaatgcc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2188 tggcacgatcccaatcacattaagattccattagaataatactagtaatgaacaaatgcc 2247 Query: 488 aaattatacaagttttagtgggaatgtggt 517 |||||||||||||||||||||||||||||| Sbjct: 2248 aaattatacaagttttagtgggaatgtggt 2277 >CanB-RA feature: mRNA loc=X:join(5073359..5073441,5073667..5073714, 5073984..5075149);ID=FBan0004209;gene_id=FBgn0010014;gene _sym=CanB;sym=CG4209;scaffold=AE003434;len=1297 Length = 1297 Score = 597 bits (301), Expect = e-170 Identities = 301/301 (100%) Strand = Plus / Plus Query: 518 cactttgttccaaacgatccaaaccgatcgatctctatcatccacagaatgcaatgaatt 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 911 cactttgttccaaacgatccaaaccgatcgatctctatcatccacagaatgcaatgaatt 970 Query: 578 gtgtcttatactcatacttgaaaccaccggcaacggaccactcaaccaaagaactcatct 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 971 gtgtcttatactcatacttgaaaccaccggcaacggaccactcaaccaaagaactcatct 1030 Query: 638 atacccctccttccattcctccttccattcgaaatgacatactttcgaggttcgaacagc 697 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1031 atacccctccttccattcctccttccattcgaaatgacatactttcgaggttcgaacagc 1090 Query: 698 tctacgattgggattgttcgcatcatcttaaactagtttgtactatatcctaaactctac 757 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1091 tctacgattgggattgttcgcatcatcttaaactagtttgtactatatcctaaactctac 1150 Query: 758 gttcaattcaagcctaacacttaagttcatctctcgactaaatgttgtgtataagatatg 817 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1151 gttcaattcaagcctaacacttaagttcatctctcgactaaatgttgtgtataagatatg 1210 Query: 818 t 818 | Sbjct: 1211 t 1211 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,833 Number of Sequences: 18737 Number of extensions: 21833 Number of successful extensions: 628 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 625 Number of HSP's gapped (non-prelim): 3 length of query: 921 length of database: 41,270,998 effective HSP length: 17 effective length of query: 904 effective length of database: 40,952,469 effective search space: 37021031976 effective search space used: 37021031976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071737 AY071737|AY071737 Drosophila melanogaster RH45738 full length cDNA. (296 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG12158-RA feature: mRNA loc=2R:complement(4423203..4423413,4423... 541 e-153 >CG12158-RA feature: mRNA loc=2R:complement(4423203..4423413, 4423468..4423538);ID=FBan0012158;gene_id=FBgn0040775;gen e_sym=CG12158;sym=CG12158;scaffold=AE003833;len=282 Length = 282 Score = 541 bits (273), Expect = e-153 Identities = 276/277 (99%) Strand = Plus / Plus Query: 4 agtttcaaattcaacatgaagcagttcgcattgttcagcatcttccttctaattctggct 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 agtttcaaattcaacatgaagcagttcgcattgttcagcatcttccttctaattctggct 62 Query: 64 gtgggtttggcacaaatgccgctgcaggtggccgcccagggccaaaatggacattcgcag 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 gtgggtttggcacaaatgccgctgcaggtggccgcccagggccaaaatggacattcgcag 122 Query: 124 ggacagccgccaagaccgccaaatggcaatggaaacggcaaccagcagagtggacaagga 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 ggacagccgccaagaccgccaaatggcaatggaaacggcaaccagcagagtggacaagga 182 Query: 184 caaagcgggcagaacaactagaactgggatatttctggagggggacacacacctcctcgc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 caaagcgggcagaacaactagaactgggatatttctggagggggacacacacctcctcgc 242 Query: 244 cacttccccagttacttaaataaacactttccccagc 280 ||||| ||||||||||||||||||||||||||||||| Sbjct: 243 cactttcccagttacttaaataaacactttccccagc 279 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8520 Number of Sequences: 18737 Number of extensions: 8520 Number of successful extensions: 793 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 792 Number of HSP's gapped (non-prelim): 1 length of query: 296 length of database: 41,270,998 effective HSP length: 16 effective length of query: 280 effective length of database: 40,971,206 effective search space: 11471937680 effective search space used: 11471937680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071740 AY071740|AY071740 Drosophila melanogaster RH47344 full length cDNA. (3599 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 76,022 Number of Sequences: 18737 Number of extensions: 76022 Number of successful extensions: 1698 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1698 Number of HSP's gapped (non-prelim): 0 length of query: 3599 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3580 effective length of database: 40,914,995 effective search space: 146475682100 effective search space used: 146475682100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071755 AY071755|AY071755 Drosophila melanogaster RH61753 full length cDNA. (325 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8103 Number of Sequences: 18737 Number of extensions: 8103 Number of successful extensions: 642 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 642 Number of HSP's gapped (non-prelim): 0 length of query: 325 length of database: 41,270,998 effective HSP length: 16 effective length of query: 309 effective length of database: 40,971,206 effective search space: 12660102654 effective search space used: 12660102654 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071757 AY071757|AY071757 Drosophila melanogaster RH62830 full length cDNA. (326 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6407 Number of Sequences: 18737 Number of extensions: 6407 Number of successful extensions: 492 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 492 Number of HSP's gapped (non-prelim): 0 length of query: 326 length of database: 41,270,998 effective HSP length: 16 effective length of query: 310 effective length of database: 40,971,206 effective search space: 12701073860 effective search space used: 12701073860 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY071768 AY071768|AY071768 Drosophila melanogaster SD06617 full length cDNA. (3244 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 97,941 Number of Sequences: 18737 Number of extensions: 97941 Number of successful extensions: 9276 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9276 Number of HSP's gapped (non-prelim): 0 length of query: 3244 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3225 effective length of database: 40,914,995 effective search space: 131950858875 effective search space used: 131950858875 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY075164 AY075164|AY075164 Drosophila melanogaster AT05466 full length cDNA. (2846 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32226-RA feature: mRNA loc=3L:complement(20215667..20216036,20... 2702 0.0 >CG32226-RA feature: mRNA loc=3L:complement(20215667..20216036,20216102..20216683, 20216742..20217441,20217503..20217766,20218036..20219438, 20219495..20220640);ID=FBan0032226;gene_id=FBgn0052226;ge ne_sym=CG32226;sym=CG32226;scaffold=AE003514;len=4465 Length = 4465 Score = 2702 bits (1363), Expect = 0.0 Identities = 1369/1371 (99%) Strand = Plus / Minus Query: 65 agtggaaacatccatcttctccacgtatccctcgccgggttcacttgtctgatgtgcctt 124 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2514 agtggaaacatccatcttctccacgtatccctcgctgggttcacttgtctgatgtgcctt 2455 Query: 125 catgttggcgggatcaaacacaaagacatcgcccaactcgctggttatccagatcgcatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2454 catgttggcgggatcaaacacaaagacatcgcccaactcgctggttatccagatcgcatt 2395 Query: 185 gccagccggttttcccaccatagtgttgatctggctacagactgacgacaggtgggacaa 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2394 gccagccggttttcccaccatagtgttgatctggctacagactgacgacaggtgggacaa 2335 Query: 245 ccagtcctccatttccgagtcactggagaactgtagcttaacgggcgaacagtttacggg 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2334 ccagtcctccatttccgagtcactggagaactgtagcttaacgggcgaacagtttacggg 2275 Query: 305 aagatgaggagcatgaatagcgatccgcggtgctccggcttcactgcagcactgaacaca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2274 aagatgaggagcatgaatagcgatccgcggtgctccggcttcactgcagcactgaacaca 2215 Query: 365 ggtgatgtctgacaacgggaactgaatcttcgtggcggctccatccggactaagtaccgt 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2214 ggtgatgtctgacaacgggaactgaatcttcgtggcggctccatccggactaagtaccgt 2155 Query: 425 aaaagttccagagtccccggatcgcgagttttcactactatttgtgtcagtgccactgcc 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2154 aaaagttccagagtccccggatcgcgagttttcactactatttgtgtcagtgccactgcc 2095 Query: 485 actgcttacccactcaagttcgatgatacaatcctcaaactcgcctccaggtcgctgata 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2094 actgcttacccactcaagttcgatgatacaatcctcaaactcgcctccaggtcgctgata 2035 Query: 545 gcgcgcatccgccgatttgacccacgaagaaagctccactgccttctcgaacttggccac 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2034 gcgcgcatccgccgatttgacccacgaagaaagctccactgccttctcgaacttggccac 1975 Query: 605 agtctgaagcttggccagtttctcctgacgtcgctgcaacttgttcacaatatcctttcg 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1974 agtctgaagcttggccagtttctcctgacgtcgctgcaacttgttcacaatatcctttcg 1915 Query: 665 ccaattggcattcacgtccactttactgtcgctcgtctgctcgttaaaccaattgggcat 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1914 ccaattggcattcacgtccactttactgtcgctcgtctgctcgttaaaccaattgggcat 1855 Query: 725 gttgctggcatccacagtcacagcacctgaagctacgcagctccatagtatcccgcattc 784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1854 gttgctggcatccacagtcacagcacctgaagctacgcagctccatagtatcccgcattc 1795 Query: 785 tgtccaaaattgtgatcccgtatggtcgtcatcttctcccagaaacacatccgatccatg 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1794 tgtccaaaattgtgatcccgtatggtcgtcatcttctcccagaaacacatccgatccatg 1735 Query: 845 gtgcgtggagtccgactcaaacacggtcgaatcgctctctggatgcgcttcagtgcccac 904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1734 gtgcgtggagtccgactcaaacacggtcgaatcgctctctggatgcgcttcagtgcccac 1675 Query: 905 gacggacccaacacttcggacgggagaccaagctcttggattcctcagctgggtctcaaa 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1674 gacggacccaacacttcggacgggagaccaagctcttggattcctcagctgggtctcaaa 1615 Query: 965 cttgccagttaccacctccaccacatccgctgcgggagcactggaagcatgtgaagtttc 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1614 cttgccagttaccacctccaccacatccgctgcgggagcactggaagcatgtgaagtttc 1555 Query: 1025 gcgaagcgccgccgttctctgcttgtggcgatcgttgagattcagacttccaattgtcgg 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1554 gcgaagcgccgccgttctctgcttgtggcgatcgttgagattcagacttccaattgtcgg 1495 Query: 1085 aggtgaatcggcactgagtttccaacgttcgttcttaagaagaccaggtggaccgccatt 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1494 aggtgaatcggcactgagtttccaacgttcgttcttaagaagaccaggtggaccgccatt 1435 Query: 1145 actagagcaggagcccgtagagctgttgagcacagtttctataactgcacacgtctctac 1204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1434 actagagcaggagcccgtagagctgttgagcacagtttctataactgcacacgtctctac 1375 Query: 1205 cacacccttctccttctccttggagtacaaattggagaagctctggtgctttgagcctgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1374 cacacccttctccttctccttggagtacaaattggagaagctctggtgctttgagcctgg 1315 Query: 1265 cgttgaactacttccgccgcttttacgagagactatggatagagagctagaagtgcggct 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1314 cgttgaactacttccgccgcttttacgagagactatggatagagagctagaagtgcggct 1255 Query: 1325 gatttgcatgggacattgaattaaacgccattttttgccagtaggatcggcagaggtcac 1384 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1254 gatttgcatgggacattgaattaaacgccattttttgccagtagggtcggcagaggtcac 1195 Query: 1385 cccagagcggtggtacaaacaacggtcagcggctccaatggcaaagacctg 1435 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1194 cccagagcggtggtacaaacaacggtcagcggctccaatggcaaagacctg 1144 Score = 2220 bits (1120), Expect = 0.0 Identities = 1141/1148 (99%) Strand = Plus / Minus Query: 1487 acctgatcgttggccgccacagagaccattgaaatgtttcccaccatttccacccagccc 1546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1148 acctgatcgttggccgccacagagaccattgaaatgtttcccaccatttccacccagccc 1089 Query: 1547 ttgccaatggccgaatcctcgcttatgcccgctgcttcacccttgacgcctctcctgaac 1606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1088 ttgccaatggccgaatcctcgcttatgcccgctgcttcacccttgacgcctctcctgaac 1029 Query: 1607 caggcgtgatgatcattagttacacaccacacagcatcggtgcccacggaaacgtgaaca 1666 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1028 caggcgtgatgatcattggttacacaccacacagcatcggtgcccacggaaacgtgaaca 969 Query: 1667 atgcgcaagctactggcggccacgggggttttgacatccaaccacgagtcaccgactagg 1726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 968 atgcgcaagctactggcggccacgggggttttgacatccaaccacgagtcaccgactagg 909 Query: 1727 ttgtctctggttacaccagtacgtacgataactcggccgttatagagtaccgcccatacc 1786 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 908 ttgtctctggttacaccagtacgtacgataactcggccgttatggagtaccgcccatacc 849 Query: 1787 aatcctgtgggtcccacgctgatctgcgcgagttcactgcccgtgggcgtgggtacagct 1846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 848 aatcctgtgggtcccacgctgatctgcgcgagttcactgcccgtgggcgtgggtacagct 789 Query: 1847 gtccagcgaagaccctcgggcgccgttttggacacccccgtgcgaaacatagccctgccg 1906 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 788 gtccagcgaagaccctcgggcgccgttttggacacccccgtgcgaaacatagccctgcca 729 Query: 1907 tgggcggtaatggcccagacacacaaagtgccggcaggagcgttgggaacacaagtgccg 1966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 728 tgggcggtaatggcccagacacacaaagtgccggcaggagcgttgggaacacaagtgccg 669 Query: 1967 cctatagccacgtctatgaagggctcctgcgtgggatccttgtgtagtggtgccaccgcg 2026 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 668 cctatagccacgtctatgaagggctcctgcgtgggatccttgtgtagtggtgccaccgcg 609 Query: 2027 caccagctattcaaggctgcatacctcctatatctcacccacttgcgtcgtcgcacatac 2086 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608 caccagctattcaaggctgcatacctcctatatctcacccacttgcgtcgtcgcacatac 549 Query: 2087 gagttccaagacttctttgccgagtacgtggctggaaagtccagggcgtacatccagcca 2146 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 548 gagttccaagacttctttgccgagtacgtggccggaaagtccagggcgtacatccagcca 489 Query: 2147 tcctcggtcagcggctgtccatcgagctctaagtccaggtgccagtcgccgtcccattgc 2206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 488 tcctcggtcagcggctgtccatcgagctctaagtccaggtgccagtcgccgtcccattgc 429 Query: 2207 cacgccatcgagggcagtcggattttgtccacaccacgctccacactgccatcggcggag 2266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 428 cacgccatcgagggcagtcggattttgtccacaccacgctccacactgccatcggcggag 369 Query: 2267 gaatatctgtaccgatccgtgggcagcagcgtcttcgaaaatccctcgatgggcagccag 2326 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 368 gaatatctgtaccgatcagtgggcagcagcgtcttcgaaaatccttcgatgggcagccag 309 Query: 2327 cgctcgttctcgtacgactcctcccgaatccgaatgggcacgtccagaccgtgcacatga 2386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 cgctcgttctcgtacgactcctcccgaatccgaatgggcacgtccagaccgtgcacatga 249 Query: 2387 acgtacacctggcggtcgccgccaatggcccacaaaaagttgggcacagcgcagatcttc 2446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 acgtacacctggcggtcgccgccaatggcccacaaaaagttgggcacagcgcagatcttc 189 Query: 2447 ttgaactccaatcccagatagggaagttcgcgccacgctccggagttggtggacagcgtg 2506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 ttgaactccaatcccagatagggaagttcgcgccacgctccggagttggtggacagcgtg 129 Query: 2507 tagacgcgcccttcactgctggcggcgaataggtaggagctcggcatcctgagatctatt 2566 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 128 tagacgcgcccttcactgctggcggcgaataggtagaagctcggcatcctgagatctatt 69 Query: 2567 actaaagaccaaggggcctctttctgtctggcatcgtgtttacaatcaaattggaaaaat 2626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68 actaaagaccaaggggcctctttctgtctggcatcgtgtttacaatcaaattggaaaaat 9 Query: 2627 tgattttt 2634 |||||||| Sbjct: 8 tgattttt 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 65,025 Number of Sequences: 18737 Number of extensions: 65025 Number of successful extensions: 1702 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1699 Number of HSP's gapped (non-prelim): 3 length of query: 2846 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2827 effective length of database: 40,914,995 effective search space: 115666690865 effective search space used: 115666690865 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY075189 AY075189|AY075189 Drosophila melanogaster AT13310 full length cDNA. (606 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,539 Number of Sequences: 18737 Number of extensions: 13539 Number of successful extensions: 298 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 298 Number of HSP's gapped (non-prelim): 0 length of query: 606 length of database: 41,270,998 effective HSP length: 17 effective length of query: 589 effective length of database: 40,952,469 effective search space: 24121004241 effective search space used: 24121004241 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY075378 AY075378|AY075378 Drosophila melanogaster LD08233 full length cDNA. (1891 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5346-RA feature: mRNA loc=3R:complement(18336460..18336764,183... 3665 0.0 >CG5346-RA feature: mRNA loc=3R:complement(18336460..18336764,18336882..18337066, 18337413..18338168,18338412..18338527,18343166..18343461, 18344774..18345039);ID=FBan0005346;gene_id=FBgn0038981;ge ne_sym=CG5346;sym=CG5346;scaffold=AE003739;len=1924 Length = 1924 Score = 3665 bits (1849), Expect = 0.0 Identities = 1863/1870 (99%) Strand = Plus / Minus Query: 2 tttacggtgtatgcatgtattgtatatagtatctcgatacatataaattaatgaaatgaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1922 tttacggtgtatgcatgtattgtatatagtatctcgatacatataaattaatgaaatgaa 1863 Query: 62 gcaattacaatcgtatggaataaaagtaaaggtaataataaaaaggttcaaaacatcatc 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1862 gcaattacaatcgtatggaataaaagtaaaggtaataataaaaaggttcaaaacatcatc 1803 Query: 122 atatgagttgctgcttttcattttccccatccgttcccacaacgaacttcatcccagctt 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1802 atatgagttgctgcttttcattttccccatccgttcccacaacgaacttcatcccagctt 1743 Query: 182 aggtagagatgcgatggatggctcgaccgactatggtctatggttgttactgcttatgag 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1742 aggtagagatgcgatggatggctcgaccgactatggtctatggttgttactgcttatgag 1683 Query: 242 tgattgttactgctatacgtatctctaaactttttctgtatcaactgataggcattgtag 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1682 tgattgttactgctatacgtatctctaaactttttctgtatcaactgataggcattgtag 1623 Query: 302 actctttctttcgccgccttgaaggacttcttgcgctgcttgagacacgccttgtcctgg 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1622 actctttctttcgccgccttgaaggacttcttgcgctgcttgagacacgccttgtcctgg 1563 Query: 362 acggcatctggattgggcagatcggtgggcgatatcgtggtgatgttgtccggatggcag 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 acggcatctggattgggcagatcggtgggcgatatcgtggtgatgttgtccggatggcag 1503 Query: 422 aagaacgctatcgagtggcggccacgagcccgaatagtttcctgctccggtattatcacg 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 aagaacgctatcgagtggcggccacgagcccgaatagtttcctgctccggtattatcacg 1443 Query: 482 cgatgttgcaatgccggatatcgtccctgtgtccagatatttaagatctcgccacagttg 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 cgatgttgcaatgccggatatcgtccctgtgtccagatatttaagatctcgccacagttg 1383 Query: 542 acgagtatggagccgggcaggtggcccacgcgattccacttttcgctgccgggcagcctc 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 acgagtatggagccgggcaggtggcccacgcgattccacttttcgctgccgggcagcctc 1323 Query: 602 acctccagtccgccctccgagtcctgggagagcagggtgaaggtgccgtagtccacgtgt 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 acctccagtccgccctccgagtcctgggagagcagggtgaaggtgccgtagtccacgtgt 1263 Query: 662 ggtggacactggatgacggcgccgttgcccagcttgtgctcgaacaattggccattgggc 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 ggtggacactggatgacggcgccgttgcccagcttgtgctcgaacaattggccattgggc 1203 Query: 722 ccatccacctcgttgaggtcgtcctcgtcgcggggattgtgctccggccggaaatctggc 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 ccatccacctcgttgaggtcgtcctcgtcgcggggattgtgctccggccggaaatctggc 1143 Query: 782 tggttggacagacagcgctggtagctgtactggcagcgacccttgatcacgtcgttctgg 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1142 tggttggacagacagcgctggtagctgtactggcagcgacccttgatcacgtcgttctgg 1083 Query: 842 ccgggctcgtcgtccactatgggcggatagtagagcatgcgcagggagctcatgttgtcg 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1082 ccgggctcgtcgtccactatgggcggatagtagagcatgcgcagggagctcatgttgtcg 1023 Query: 902 tggtcgccggacagcatgtgcgagtgcttttcgaggaagaacgtgtgcggaatgtccagg 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1022 tggtcgccggacagcatgtgcgagtgcttttcgaggaagaacgtgtgcggaatgtccagg 963 Query: 962 gagacggccagcgcctgcagtataaagctggccagcgccttgaagtccgtggccagggtg 1021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 962 gagacggccagcgcctgcagtataaagctggccagcgccttgaagtccgtggccagggtg 903 Query: 1022 ctgatgtggtccgcaaatcctggcagcggctcctctggcagattctgagcgttcagtgtg 1081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 902 ctgatgtggtccgcaaatcctggcagcggctcctctggcagattctgagcgttcagtgtg 843 Query: 1082 ctgatattgaaagcgtgacgcagctccggcgacttgccatcgaatcgctgctgctgacca 1141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 842 ctgatattgaaagcgtgacgcagctccggcgacttgccatcgaatcgctgctgctgacca 783 Query: 1142 cgactcacgtagccatgtttgtctccatcggcacggatatagtgctgtcggatgtccggc 1201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 782 cgactcacgtagccatgtttgtctccatcggcacggatatagtgctgtcggatgtccggc 723 Query: 1202 ggcagattcacgaagtcatccaggtgatcccaggcagtcttgagcttctcatcggagatg 1261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 722 ggcagattcacgaagtcatccaggtgatcccaggcagtcttgagcttctcatcggagatg 663 Query: 1262 ccatggttgaccagcagggccatgcccttctcggagagcgctttcttcagctggtgaccc 1321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 662 ccatggttgaccagcagggccatgcccttctcggagagcgctttcttcagctggtgaccc 603 Query: 1322 acgcggttgaccaccgacttgaccggcacctcctcgatgccacagtgggcgagatcgatg 1381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 602 acgcggttgaccaccgacttgaccggcacctcctcgatgccacagtgggcgagatcgatg 543 Query: 1382 atcggaaccacgctgcgcgagaggagcgtgtcgagtttatcgtcgctgctctttgttttt 1441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 atcggaaccacgctgcgcgagaggagcgtgtcgagtttatcgtcgctgctctttgttttt 483 Query: 1442 atcattttgagttggtgtttgtgcttcgagtgacttccagagggtcttcgacgtccaaag 1501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 atcattttgagttggtgtttgtgcttcgagtgacttccagagggtcttcgacgtccaaag 423 Query: 1502 ttctttggtttctgattggggagagcaatcgaacactcgccgcacttgtgctcgctatat 1561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 ttctttggtttctgattggggagagcaatcgaacactcgccgcacttgtgctcgctatat 363 Query: 1562 ctttatcacaattcgatgaggggggactctgggtaccggagaggatccgggatccggaga 1621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 ctttatcacaattcgatgaggggggactctgggtaccggagaggatccgggatccggaga 303 Query: 1622 cgaggtgcacttccagcgatggctgactaaatgaaaagtgaaaactcgctttcttttttc 1681 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 cgaggtgcacttccagcgatggctgactaaatgaaaagtgaaaactcgctttcttttttc 243 Query: 1682 gcacaggtttcgcttttcatcgaacacccgacccgaacgaacagcagttggccaacagtc 1741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 gcacaggtttcgcttttcatcgaacacccgacccgaacgaacagcagttggccaacagtc 183 Query: 1742 tagttagtcaattttcgtatcgctttctgctgcnnnnnnngcacactttccatcattttg 1801 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 182 tagttagtcaattttcgtatcgctttctgctgctttttttgcacactttccatcattttg 123 Query: 1802 taacacactccgatcgcgaatttaacccagatacacctgaactagcgcagagagcaacgg 1861 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 taacacactccgatcgcgaatttaacccagatacacctgaactagcgcagagagcaacgg 63 Query: 1862 cgtctgtctc 1871 |||||||||| Sbjct: 62 cgtctgtctc 53 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 49,846 Number of Sequences: 18737 Number of extensions: 49846 Number of successful extensions: 1123 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1121 Number of HSP's gapped (non-prelim): 1 length of query: 1891 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1873 effective length of database: 40,933,732 effective search space: 76668880036 effective search space used: 76668880036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY075471 AY075471|AY075471 Drosophila melanogaster RE31004 full length cDNA. (1094 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,920 Number of Sequences: 18737 Number of extensions: 20920 Number of successful extensions: 488 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 488 Number of HSP's gapped (non-prelim): 0 length of query: 1094 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1076 effective length of database: 40,933,732 effective search space: 44044695632 effective search space used: 44044695632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY075522 AY075522|AY075522 Drosophila melanogaster RE70209 full length cDNA. (1257 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32530-RB feature: mRNA loc=X:join(19475393..19475641,19475715.... 2444 0.0 CG32530-RA feature: mRNA loc=X:join(19475393..19475641,19475715.... 2444 0.0 >CG32530-RB feature: mRNA loc=X:join(19475393..19475641, 19475715..19476707);ID=FBan0032530;gene_id=FBgn0052530;ge ne_sym=CG32530;sym=CG32530;scaffold=AE003513;len=1242 Length = 1242 Score = 2444 bits (1233), Expect = 0.0 Identities = 1240/1241 (99%), Gaps = 1/1241 (0%) Strand = Plus / Plus Query: 1 agtgttggccagcgtgcgattcggaatggagtcgcgagtccgaaactgcgacacgcgcag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agtgttggccagcgtgcgattcggaatggagtcgcgagtccgaaactgcgacacgcgcag 60 Query: 61 gtaaatggaaaacacaagtcgcctcctccgccgctgatgatgggaagcaattatcccgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtaaatggaaaacacaagtcgcctcctccgccgctgatgatgggaagcaattatcccgag 120 Query: 121 cacgggaccaagccgagatccgccaaataccacaaacaacagaaccaccgagtggtgcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cacgggaccaagccgagatccgccaaataccacaaacaacagaaccaccgagtggtgcgc 180 Query: 181 aagcagccgccgcgtcccgctgttagcgaccgccacaacatctacatcaccagcaagaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aagcagccgccgcgtcccgctgttagcgaccgccacaacatctacatcaccagcaagaca 240 Query: 241 gactttaaggcccagcagcgccgctgcgaggagctgattaactccggcgcccacgagatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gactttaaggcccagcagcgccgctgcgaggagctgattaactccggcgcccacgagatc 300 Query: 301 tttctgcattgcatgggcttctccgtaacccgcggcctcaatatcgccctacgcctcgtc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tttctgcattgcatgggcttctccgtaacccgcggcctcaatatcgccctacgcctcgtc 360 Query: 361 cagaattctgacggc-cccttagctacgccatcaacacctccaccgttcagctggtggac 419 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 cagaattctgacggcgcccttagctacgccatcaacacctccaccgttcagctggtggac 420 Query: 420 gaactgcacccgctgtgcgatgccgaggacataaccttccgccagcgcaacaactcggcc 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gaactgcacccgctgtgcgatgccgaggacataaccttccgccagcgcaacaactcggcc 480 Query: 480 ctgcacatcaagatcctcaataacagtctcttcgacatcgccgtgccgcaaccgtcgcag 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ctgcacatcaagatcctcaataacagtctcttcgacatcgccgtgccgcaaccgtcgcag 540 Query: 540 tcccagacgcaagcccagtccctgggccagttccgaggcaaggcgaaggccaggcagtag 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tcccagacgcaagcccagtccctgggccagttccgaggcaaggcgaaggccaggcagtag 600 Query: 600 catgttcaaactctcggagctggtgcgctggctggggctcaccgagttcgagattctggt 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 catgttcaaactctcggagctggtgcgctggctggggctcaccgagttcgagattctggt 660 Query: 660 caatctgtgcggcctgctggtgttcaccatcacgctgaccgtcaagctccatctgcaggc 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 caatctgtgcggcctgctggtgttcaccatcacgctgaccgtcaagctccatctgcaggc 720 Query: 720 cagggccggacccggtggcatactcccggagcccatgggcgactggttcaccgtcttcag 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 cagggccggacccggtggcatactcccggagcccatgggcgactggttcaccgtcttcag 780 Query: 780 ccccctgttcttcatcgacatctgcaacgcgtacttttgcgtcattgtgggcatccgcat 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 ccccctgttcttcatcgacatctgcaacgcgtacttttgcgtcattgtgggcatccgcat 840 Query: 840 gtacctggactctaacaacaagcgcaaagccctgcatcgcttcatgtggagcacgtattt 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 gtacctggactctaacaacaagcgcaaagccctgcatcgcttcatgtggagcacgtattt 900 Query: 900 cctggtgctcatcgccatcttcaagtacctgctctgcctgaagctatccagcaagacggg 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 cctggtgctcatcgccatcttcaagtacctgctctgcctgaagctatccagcaagacggg 960 Query: 960 cctcgagtattcggaggtcttctcgccgatcttcgttctgttgcagctcgtggctgtgcg 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 cctcgagtattcggaggtcttctcgccgatcttcgttctgttgcagctcgtggctgtgcg 1020 Query: 1020 cgcctgccagttgcccaactccatctaaaccatagacgtagtatagccctagttccgtat 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 cgcctgccagttgcccaactccatctaaaccatagacgtagtatagccctagttccgtat 1080 Query: 1080 tatacatatatgtaactattctgaaagcctttaaatcattggattggtagttatctgtat 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 tatacatatatgtaactattctgaaagcctttaaatcattggattggtagttatctgtat 1140 Query: 1140 acgcaatgtggtacaataatttttaagcggtacgaaatttatctttctggatatagcata 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 acgcaatgtggtacaataatttttaagcggtacgaaatttatctttctggatatagcata 1200 Query: 1200 tctaatatatacgaattatatctgatctgattcggtatgaa 1240 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 tctaatatatacgaattatatctgatctgattcggtatgaa 1241 >CG32530-RA feature: mRNA loc=X:join(19475393..19475641, 19475715..19476707);ID=FBan0032530;gene_id=FBgn0052530;ge ne_sym=CG32530;sym=CG32530;scaffold=AE003513;len=1242 Length = 1242 Score = 2444 bits (1233), Expect = 0.0 Identities = 1240/1241 (99%), Gaps = 1/1241 (0%) Strand = Plus / Plus Query: 1 agtgttggccagcgtgcgattcggaatggagtcgcgagtccgaaactgcgacacgcgcag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agtgttggccagcgtgcgattcggaatggagtcgcgagtccgaaactgcgacacgcgcag 60 Query: 61 gtaaatggaaaacacaagtcgcctcctccgccgctgatgatgggaagcaattatcccgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtaaatggaaaacacaagtcgcctcctccgccgctgatgatgggaagcaattatcccgag 120 Query: 121 cacgggaccaagccgagatccgccaaataccacaaacaacagaaccaccgagtggtgcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cacgggaccaagccgagatccgccaaataccacaaacaacagaaccaccgagtggtgcgc 180 Query: 181 aagcagccgccgcgtcccgctgttagcgaccgccacaacatctacatcaccagcaagaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aagcagccgccgcgtcccgctgttagcgaccgccacaacatctacatcaccagcaagaca 240 Query: 241 gactttaaggcccagcagcgccgctgcgaggagctgattaactccggcgcccacgagatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gactttaaggcccagcagcgccgctgcgaggagctgattaactccggcgcccacgagatc 300 Query: 301 tttctgcattgcatgggcttctccgtaacccgcggcctcaatatcgccctacgcctcgtc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tttctgcattgcatgggcttctccgtaacccgcggcctcaatatcgccctacgcctcgtc 360 Query: 361 cagaattctgacggc-cccttagctacgccatcaacacctccaccgttcagctggtggac 419 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 cagaattctgacggcgcccttagctacgccatcaacacctccaccgttcagctggtggac 420 Query: 420 gaactgcacccgctgtgcgatgccgaggacataaccttccgccagcgcaacaactcggcc 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gaactgcacccgctgtgcgatgccgaggacataaccttccgccagcgcaacaactcggcc 480 Query: 480 ctgcacatcaagatcctcaataacagtctcttcgacatcgccgtgccgcaaccgtcgcag 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ctgcacatcaagatcctcaataacagtctcttcgacatcgccgtgccgcaaccgtcgcag 540 Query: 540 tcccagacgcaagcccagtccctgggccagttccgaggcaaggcgaaggccaggcagtag 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tcccagacgcaagcccagtccctgggccagttccgaggcaaggcgaaggccaggcagtag 600 Query: 600 catgttcaaactctcggagctggtgcgctggctggggctcaccgagttcgagattctggt 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 catgttcaaactctcggagctggtgcgctggctggggctcaccgagttcgagattctggt 660 Query: 660 caatctgtgcggcctgctggtgttcaccatcacgctgaccgtcaagctccatctgcaggc 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 caatctgtgcggcctgctggtgttcaccatcacgctgaccgtcaagctccatctgcaggc 720 Query: 720 cagggccggacccggtggcatactcccggagcccatgggcgactggttcaccgtcttcag 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 cagggccggacccggtggcatactcccggagcccatgggcgactggttcaccgtcttcag 780 Query: 780 ccccctgttcttcatcgacatctgcaacgcgtacttttgcgtcattgtgggcatccgcat 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 ccccctgttcttcatcgacatctgcaacgcgtacttttgcgtcattgtgggcatccgcat 840 Query: 840 gtacctggactctaacaacaagcgcaaagccctgcatcgcttcatgtggagcacgtattt 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 gtacctggactctaacaacaagcgcaaagccctgcatcgcttcatgtggagcacgtattt 900 Query: 900 cctggtgctcatcgccatcttcaagtacctgctctgcctgaagctatccagcaagacggg 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 cctggtgctcatcgccatcttcaagtacctgctctgcctgaagctatccagcaagacggg 960 Query: 960 cctcgagtattcggaggtcttctcgccgatcttcgttctgttgcagctcgtggctgtgcg 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 cctcgagtattcggaggtcttctcgccgatcttcgttctgttgcagctcgtggctgtgcg 1020 Query: 1020 cgcctgccagttgcccaactccatctaaaccatagacgtagtatagccctagttccgtat 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 cgcctgccagttgcccaactccatctaaaccatagacgtagtatagccctagttccgtat 1080 Query: 1080 tatacatatatgtaactattctgaaagcctttaaatcattggattggtagttatctgtat 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 tatacatatatgtaactattctgaaagcctttaaatcattggattggtagttatctgtat 1140 Query: 1140 acgcaatgtggtacaataatttttaagcggtacgaaatttatctttctggatatagcata 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 acgcaatgtggtacaataatttttaagcggtacgaaatttatctttctggatatagcata 1200 Query: 1200 tctaatatatacgaattatatctgatctgattcggtatgaa 1240 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 tctaatatatacgaattatatctgatctgattcggtatgaa 1241 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 32,832 Number of Sequences: 18737 Number of extensions: 32832 Number of successful extensions: 922 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 918 Number of HSP's gapped (non-prelim): 2 length of query: 1257 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1239 effective length of database: 40,933,732 effective search space: 50716893948 effective search space used: 50716893948 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY075563 AY075563|AY075563 Drosophila melanogaster RH68460 full length cDNA. (742 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11315-RB feature: mRNA loc=3R:complement(26560567..26560959,26... 1390 0.0 CG11315-RA feature: mRNA loc=3R:complement(26560567..26561376);I... 759 0.0 >CG11315-RB feature: mRNA loc=3R:complement(26560567..26560959, 26561041..26561376);ID=FBan0011315;gene_id=FBgn0039801;g ene_sym=CG11315;sym=CG11315;scaffold=AE003775;len=729 Length = 729 Score = 1390 bits (701), Expect = 0.0 Identities = 723/729 (99%), Gaps = 6/729 (0%) Strand = Plus / Plus Query: 2 gcattccgcgtccgactttcgatccatcatgttgcgtctgagttcgctcctgcctgtcgc 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcattccgcgtccgactttcgatccatcatgttgcgtctgagttcgctcctgcctgtcgc 60 Query: 62 ctttgctctggtgttgtcatccgtctccgctgagatagtcaactttcagacttgcgaaga 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctttgctctggtgttgtcatccgtctccgctgagatagtcaactttcagacttgcgaaga 120 Query: 122 tagtgtggactcctgctcgattagtcaggtgcgggtgacgccctgtccggaagccaatgc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tagtgtggactcctgctcgattagtcaggtgcgggtgacgccctgtccggaagccaatgc 180 Query: 182 caatgccgcatgccacattcgccggaggcaccgcttcacgatgagcttcgactttacgcc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caatgccgcatgccacattcgccggaggcaccgcttcacgatgagcttcgactttacgcc 240 Query: 242 ccacttcgatgcggacaccctggtggccagcttgggctgggccaagagcgagaacgtgga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ccacttcgatgcggacaccctggtggccagcttgggctgggccaagagcgagaacgtgga 300 Query: 302 gctgcccctgcttaccatggaccaggaggcctgca-----tacaccatccgttgggccct 356 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 301 gctgcccctgcttaccatggaccaggaggcctgcaatccatacaccatccgttgggccct 360 Query: 357 gaaggatccggtttcccagaaacgttgctgcttcaccatcgacatcaaggtggtgcgcta 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gaaggatccggtttcccagaaacgttgctgcttcaccatcgacatcaaggtggtgcgcta 420 Query: 417 gcaaggtgcactccgtaatggatgctccacttaatatttggattaatatatatcttaaat 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gcaaggtgcactccgtaatggatgctccacttaatatttggattaatatatatcttaaat 480 Query: 477 atcttcgaaattaaagtgatttacaagtgggtcgatacgatagtttggtttggtgtaatt 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 atcttcgaaattaaagtgatttacaagtgggtcgatacgatagtttggtttggtgtaatt 540 Query: 537 agcggcacctgtttataatctgtatacccagtaattggactcatttcaccttgaatatgt 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agcggcacctgtttataatctgtatacccagtaattggactcatttcaccttgaatatgt 600 Query: 597 cagcagaacaaggaatgctgctgatatgagtgccaattaacactttgaaatgactaatta 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 cagcagaacaaggaatgctgctgatatgagtgccaattaacactttgaaatgactaatta 660 Query: 657 ggtagagtatgccaaataaaatatgcggggttacctaatttcttctagttgaaaatataa 716 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ggtagagtatgcc-aataaaatatgcggggttacctaatttcttctagttgaaaatataa 719 Query: 717 atactctac 725 ||||||||| Sbjct: 720 atactctac 728 >CG11315-RA feature: mRNA loc=3R:complement(26560567..26561376);ID=FBan0011315;gen e_id=FBgn0039801;gene_sym=CG11315;sym=CG11315;scaffold=A E003775;len=810 Length = 810 Score = 759 bits (383), Expect = 0.0 Identities = 390/391 (99%), Gaps = 1/391 (0%) Strand = Plus / Plus Query: 335 catacaccatccgttgggccctgaaggatccggtttcccagaaacgttgctgcttcacca 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 catacaccatccgttgggccctgaaggatccggtttcccagaaacgttgctgcttcacca 479 Query: 395 tcgacatcaaggtggtgcgctagcaaggtgcactccgtaatggatgctccacttaatatt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 tcgacatcaaggtggtgcgctagcaaggtgcactccgtaatggatgctccacttaatatt 539 Query: 455 tggattaatatatatcttaaatatcttcgaaattaaagtgatttacaagtgggtcgatac 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 tggattaatatatatcttaaatatcttcgaaattaaagtgatttacaagtgggtcgatac 599 Query: 515 gatagtttggtttggtgtaattagcggcacctgtttataatctgtatacccagtaattgg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 gatagtttggtttggtgtaattagcggcacctgtttataatctgtatacccagtaattgg 659 Query: 575 actcatttcaccttgaatatgtcagcagaacaaggaatgctgctgatatgagtgccaatt 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 actcatttcaccttgaatatgtcagcagaacaaggaatgctgctgatatgagtgccaatt 719 Query: 635 aacactttgaaatgactaattaggtagagtatgccaaataaaatatgcggggttacctaa 694 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 720 aacactttgaaatgactaattaggtagagtatgcc-aataaaatatgcggggttacctaa 778 Query: 695 tttcttctagttgaaaatataaatactctac 725 ||||||||||||||||||||||||||||||| Sbjct: 779 tttcttctagttgaaaatataaatactctac 809 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Plus Query: 2 gcattccgcgtccgactttcgatccatcatgttgcgtctgagttcgctcctgcctgtcgc 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcattccgcgtccgactttcgatccatcatgttgcgtctgagttcgctcctgcctgtcgc 60 Query: 62 ctttgctctggtgttgtcatccgtctccgctgagatagtcaactttcagacttgcgaaga 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctttgctctggtgttgtcatccgtctccgctgagatagtcaactttcagacttgcgaaga 120 Query: 122 tagtgtggactcctgctcgattagtcaggtgcgggtgacgccctgtccggaagccaatgc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tagtgtggactcctgctcgattagtcaggtgcgggtgacgccctgtccggaagccaatgc 180 Query: 182 caatgccgcatgccacattcgccggaggcaccgcttcacgatgagcttcgactttacgcc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caatgccgcatgccacattcgccggaggcaccgcttcacgatgagcttcgactttacgcc 240 Query: 242 ccacttcgatgcggacaccctggtggccagcttgggctgggccaagagcgagaacgtgga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ccacttcgatgcggacaccctggtggccagcttgggctgggccaagagcgagaacgtgga 300 Query: 302 gctgcccctgcttaccatggaccaggaggcctgca 336 ||||||||||||||||||||||||||||||||||| Sbjct: 301 gctgcccctgcttaccatggaccaggaggcctgca 335 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,771 Number of Sequences: 18737 Number of extensions: 16771 Number of successful extensions: 405 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 399 Number of HSP's gapped (non-prelim): 3 length of query: 742 length of database: 41,270,998 effective HSP length: 17 effective length of query: 725 effective length of database: 40,952,469 effective search space: 29690540025 effective search space used: 29690540025 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY075583 AY075583|AY075583 Drosophila melanogaster SD08734 full length cDNA. (4849 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 100,073 Number of Sequences: 18737 Number of extensions: 100073 Number of successful extensions: 2066 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2066 Number of HSP's gapped (non-prelim): 0 length of query: 4849 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4830 effective length of database: 40,914,995 effective search space: 197619425850 effective search space used: 197619425850 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY075587 AY075587|AY075587 Drosophila melanogaster SD10530 full length cDNA. (4908 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 107,777 Number of Sequences: 18737 Number of extensions: 107777 Number of successful extensions: 2660 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2660 Number of HSP's gapped (non-prelim): 0 length of query: 4908 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4889 effective length of database: 40,914,995 effective search space: 200033410555 effective search space used: 200033410555 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY084090 AY084090|AY084090 Drosophila melanogaster AT02866 full insert cDNA. (2322 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 66,165 Number of Sequences: 18737 Number of extensions: 66165 Number of successful extensions: 1736 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1736 Number of HSP's gapped (non-prelim): 0 length of query: 2322 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2304 effective length of database: 40,933,732 effective search space: 94311318528 effective search space used: 94311318528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY084094 AY084094|AY084094 Drosophila melanogaster AT03385 full insert cDNA. (1388 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Ank2-RC feature: mRNA loc=3L:complement(7664342..7665443,7665502... 900 0.0 Ank2-RB feature: mRNA loc=3L:complement(7658880..7659853,7659918... 900 0.0 >Ank2-RC feature: mRNA loc=3L:complement(7664342..7665443,7665502..7665908, 7665990..7666272,7667418..7668345,7668676..7668879, 7669048..7669812,7669878..7670330,7670397..7670498, 7672667..7673179);ID=FBan0007462;gene_id=FBgn0017645;gene _sym=Ank2;sym=CG7462;scaffold=AE003558;len=4757 Length = 4757 Score = 900 bits (454), Expect = 0.0 Identities = 454/454 (100%) Strand = Plus / Minus Query: 713 atcgagaagcagagtcgctgccttgacgtcgtcctttttggcggcaatgtgcagcgcagg 772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1068 atcgagaagcagagtcgctgccttgacgtcgtcctttttggcggcaatgtgcagcgcagg 1009 Query: 773 aagcctgacctttccacgagtatcactctcgaggaggacagcaacgactttgtcatgacc 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1008 aagcctgacctttccacgagtatcactctcgaggaggacagcaacgactttgtcatgacc 949 Query: 833 ctgctgcatggccaccgccagtggggtgaagccatcctcggtggccagactctggttggc 892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 948 ctgctgcatggccaccgccagtggggtgaagccatcctcggtggccagactctggttggc 889 Query: 893 tccgttggacaaaaggagacgcaccacagcatcgtggttctcctgggcagccatgtagag 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 888 tccgttggacaaaaggagacgcaccacagcatcgtggttctcctgggcagccatgtagag 829 Query: 953 tggagtgaatccattctgggattgcacatttacggaggcattgtgctccagcagtagctt 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 828 tggagtgaatccattctgggattgcacatttacggaggcattgtgctccagcagtagctt 769 Query: 1013 caccacctcctcctgtccagccaatgaggcgatgtggagggcagtgtttccctttttggt 1072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 768 caccacctcctcctgtccagccaatgaggcgatgtggagggcagtgtttccctttttggt 709 Query: 1073 ggcactatccacaatcgcgcccctacgaaggagttccgagacgacgtggatgtggccatc 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 708 ggcactatccacaatcgcgcccctacgaaggagttccgagacgacgtggatgtggccatc 649 Query: 1133 cttggaggccaggtgcagggcattcaagccattc 1166 |||||||||||||||||||||||||||||||||| Sbjct: 648 cttggaggccaggtgcagggcattcaagccattc 615 Score = 620 bits (313), Expect = e-177 Identities = 313/313 (100%) Strand = Plus / Minus Query: 150 gcaatgtgcagtggagtgaatccattcaaagcccttgcattggcatcagcattccgatct 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 gcaatgtgcagtggagtgaatccattcaaagcccttgcattggcatcagcattccgatct 1560 Query: 210 agtaaaagcttagccaccctaacatgaccacagtgagcagccacatgaagagcagtgaga 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1559 agtaaaagcttagccaccctaacatgaccacagtgagcagccacatgaagagcagtgaga 1500 Query: 270 taatccactgtcacctcgtcgacgggagcacgatggtacaagaggatgcgggcggcatca 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1499 taatccactgtcacctcgtcgacgggagcacgatggtacaagaggatgcgggcggcatca 1440 Query: 330 acatgctcaccctgggcggccatatggaggggtgccaaaccatttttggtcttggcagag 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1439 acatgctcaccctgggcggccatatggaggggtgccaaaccatttttggtcttggcagag 1380 Query: 390 atgggagctcctcgttcgagtagcatgtcaacaacttgctcatgacccgagcgagcggcg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1379 atgggagctcctcgttcgagtagcatgtcaacaacttgctcatgacccgagcgagcggcg 1320 Query: 450 caatggagcggag 462 ||||||||||||| Sbjct: 1319 caatggagcggag 1307 Score = 369 bits (186), Expect = e-101 Identities = 186/186 (100%) Strand = Plus / Minus Query: 462 ggaaaccatgttggtcttaccccacttagcagccacatgcagcggactgatgttgtgctt 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1254 ggaaaccatgttggtcttaccccacttagcagccacatgcagcggactgatgttgtgctt 1195 Query: 522 ggccgagtagttgacatcggcgcccttctggatgagtaggttggcgatgttttggttacc 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1194 ggccgagtagttgacatcggcgcccttctggatgagtaggttggcgatgttttggttacc 1135 Query: 582 ataatgggaagcaatgtgcagcggggtgaagcccgacttggaagtcacgtccggattatg 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1134 ataatgggaagcaatgtgcagcggggtgaagcccgacttggaagtcacgtccggattatg 1075 Query: 642 gtcatt 647 |||||| Sbjct: 1074 gtcatt 1069 >Ank2-RB feature: mRNA loc=3L:complement(7658880..7659853,7659918..7660077, 7663375..7663579,7665232..7665443,7665502..7665908, 7665990..7666272,7667418..7668345,7668676..7668879, 7669048..7669812,7669878..7670330,7670397..7670498, 7672667..7673179);ID=FBan0007462;gene_id=FBgn0017645;gene _sym=Ank2;sym=CG7462;scaffold=AE003558;len=5206 Length = 5206 Score = 900 bits (454), Expect = 0.0 Identities = 454/454 (100%) Strand = Plus / Minus Query: 713 atcgagaagcagagtcgctgccttgacgtcgtcctttttggcggcaatgtgcagcgcagg 772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1068 atcgagaagcagagtcgctgccttgacgtcgtcctttttggcggcaatgtgcagcgcagg 1009 Query: 773 aagcctgacctttccacgagtatcactctcgaggaggacagcaacgactttgtcatgacc 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1008 aagcctgacctttccacgagtatcactctcgaggaggacagcaacgactttgtcatgacc 949 Query: 833 ctgctgcatggccaccgccagtggggtgaagccatcctcggtggccagactctggttggc 892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 948 ctgctgcatggccaccgccagtggggtgaagccatcctcggtggccagactctggttggc 889 Query: 893 tccgttggacaaaaggagacgcaccacagcatcgtggttctcctgggcagccatgtagag 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 888 tccgttggacaaaaggagacgcaccacagcatcgtggttctcctgggcagccatgtagag 829 Query: 953 tggagtgaatccattctgggattgcacatttacggaggcattgtgctccagcagtagctt 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 828 tggagtgaatccattctgggattgcacatttacggaggcattgtgctccagcagtagctt 769 Query: 1013 caccacctcctcctgtccagccaatgaggcgatgtggagggcagtgtttccctttttggt 1072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 768 caccacctcctcctgtccagccaatgaggcgatgtggagggcagtgtttccctttttggt 709 Query: 1073 ggcactatccacaatcgcgcccctacgaaggagttccgagacgacgtggatgtggccatc 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 708 ggcactatccacaatcgcgcccctacgaaggagttccgagacgacgtggatgtggccatc 649 Query: 1133 cttggaggccaggtgcagggcattcaagccattc 1166 |||||||||||||||||||||||||||||||||| Sbjct: 648 cttggaggccaggtgcagggcattcaagccattc 615 Score = 620 bits (313), Expect = e-177 Identities = 313/313 (100%) Strand = Plus / Minus Query: 150 gcaatgtgcagtggagtgaatccattcaaagcccttgcattggcatcagcattccgatct 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 gcaatgtgcagtggagtgaatccattcaaagcccttgcattggcatcagcattccgatct 1560 Query: 210 agtaaaagcttagccaccctaacatgaccacagtgagcagccacatgaagagcagtgaga 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1559 agtaaaagcttagccaccctaacatgaccacagtgagcagccacatgaagagcagtgaga 1500 Query: 270 taatccactgtcacctcgtcgacgggagcacgatggtacaagaggatgcgggcggcatca 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1499 taatccactgtcacctcgtcgacgggagcacgatggtacaagaggatgcgggcggcatca 1440 Query: 330 acatgctcaccctgggcggccatatggaggggtgccaaaccatttttggtcttggcagag 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1439 acatgctcaccctgggcggccatatggaggggtgccaaaccatttttggtcttggcagag 1380 Query: 390 atgggagctcctcgttcgagtagcatgtcaacaacttgctcatgacccgagcgagcggcg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1379 atgggagctcctcgttcgagtagcatgtcaacaacttgctcatgacccgagcgagcggcg 1320 Query: 450 caatggagcggag 462 ||||||||||||| Sbjct: 1319 caatggagcggag 1307 Score = 369 bits (186), Expect = e-101 Identities = 186/186 (100%) Strand = Plus / Minus Query: 462 ggaaaccatgttggtcttaccccacttagcagccacatgcagcggactgatgttgtgctt 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1254 ggaaaccatgttggtcttaccccacttagcagccacatgcagcggactgatgttgtgctt 1195 Query: 522 ggccgagtagttgacatcggcgcccttctggatgagtaggttggcgatgttttggttacc 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1194 ggccgagtagttgacatcggcgcccttctggatgagtaggttggcgatgttttggttacc 1135 Query: 582 ataatgggaagcaatgtgcagcggggtgaagcccgacttggaagtcacgtccggattatg 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1134 ataatgggaagcaatgtgcagcggggtgaagcccgacttggaagtcacgtccggattatg 1075 Query: 642 gtcatt 647 |||||| Sbjct: 1074 gtcatt 1069 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 36,156 Number of Sequences: 18737 Number of extensions: 36156 Number of successful extensions: 915 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 895 Number of HSP's gapped (non-prelim): 20 length of query: 1388 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1370 effective length of database: 40,933,732 effective search space: 56079212840 effective search space used: 56079212840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY084098 AY084098|AY084098 Drosophila melanogaster AT04666 full insert cDNA. (1971 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Pgant35A-RA feature: mRNA loc=2L:14341370..14343595;ID=FBan00074... 2694 0.0 >Pgant35A-RA feature: mRNA loc=2L:14341370..14343595;ID=FBan0007480;gene_id=FBgn0001 970;gene_sym=Pgant35A;sym=CG7480;scaffold=AE003643;len=22 26 Length = 2226 Score = 2694 bits (1359), Expect = 0.0 Identities = 1359/1359 (100%) Strand = Plus / Minus Query: 595 aggtcttgggcaccttttcgtgcttgagatagtaatccttgtactgatccatccagacgt 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1426 aggtcttgggcaccttttcgtgcttgagatagtaatccttgtactgatccatccagacgt 1367 Query: 655 gcgccaaacgcagtgagttcttcaacatggtgttggctccatctggcgaagtgtacggac 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1366 gcgccaaacgcagtgagttcttcaacatggtgttggctccatctggcgaagtgtacggac 1307 Query: 715 gtcgtttgcggaatatgtgaccgacacgggagcagggaacgatcttaatggcgccaccgc 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1306 gtcgtttgcggaatatgtgaccgacacgggagcagggaacgatcttaatggcgccaccgc 1247 Query: 775 attgccaggctctgaaggagatctctatattctcgccaccccatatatccatggccatgt 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1246 attgccaggctctgaaggagatctctatattctcgccaccccatatatccatggccatgt 1187 Query: 835 cgtactcgcccagatgctggaagtacttcctgttcacggcaaacaatccgccggccatgg 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1186 cgtactcgcccagatgctggaagtacttcctgttcacggcaaacaatccgccggccatgg 1127 Query: 895 tgggcgaacggaagggtccgcgaaaatcctccggcaccttgagcgtgccctcgggcagat 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1126 tgggcgaacggaagggtccgcgaaaatcctccggcaccttgagcgtgccctcgggcagat 1067 Query: 955 tctcccagcggaagtgcaggccccagttgaatcctccgcgcaccagtggactgggcgtgt 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 tctcccagcggaagtgcaggccccagttgaatcctccgcgcaccagtggactgggcgtgt 1007 Query: 1015 actcaaaggtatcagcgttgatcaggtcgatgacgggcacggccagagtggcgttctccg 1074 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 actcaaaggtatcagcgttgatcaggtcgatgacgggcacggccagagtggcgttctccg 947 Query: 1075 acttgatgaggcgcagcagcggctccagccactgctgattgacctcgatatgcgagtcga 1134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 acttgatgaggcgcagcagcggctccagccactgctgattgacctcgatatgcgagtcga 887 Query: 1135 ggaagacgagcacatcgcccacggcctcgcgtgcaccaatgacccgggaacgaatgagac 1194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 886 ggaagacgagcacatcgcccacggcctcgcgtgcaccaatgacccgggaacgaatgagac 827 Query: 1195 cctcgcgctgctcgtttttgatgtaccgcaggttgtcgtacttcaggcgggcacgcagat 1254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826 cctcgcgctgctcgtttttgatgtaccgcaggttgtcgtacttcaggcgggcacgcagat 767 Query: 1255 ccccgtgcaaatggaattccaattctggaagatcgctgtgatcatccaccagaataatct 1314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 766 ccccgtgcaaatggaattccaattctggaagatcgctgtgatcatccaccagaataatct 707 Query: 1315 cgcgcagcaggtagctgggcgtgcgttccagcacggtcttaatcgagcgcatcagcgtca 1374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 706 cgcgcagcaggtagctgggcgtgcgttccagcacggtcttaatcgagcgcatcagcgtca 647 Query: 1375 tcttgtgctcgttgtagaagcacatgactatggaggcctggggcagattttccgcttccg 1434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 tcttgtgctcgttgtagaagcacatgactatggaggcctggggcagattttccgcttccg 587 Query: 1435 tggtctcctggcgatcgcacaccttgtgccgagtgtctgggatcgcccggaagagtccta 1494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 tggtctcctggcgatcgcacaccttgtgccgagtgtctgggatcgcccggaagagtccta 527 Query: 1495 tgttattggacaccagcgcgttgaaggcgtgatgcttgtagccaatgtcgcgtatgtact 1554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 tgttattggacaccagcgcgttgaaggcgtgatgcttgtagccaatgtcgcgtatgtact 467 Query: 1555 tgtcctgcttgttgcgcaccacacccaacagttccaattgctccggatcactgggcggct 1614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 tgtcctgcttgttgcgcaccacacccaacagttccaattgctccggatcactgggcggct 407 Query: 1615 tgggtgccgccggcgattcgccagtggtaatgctggcatttggagtgcatccgacggtga 1674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 tgggtgccgccggcgattcgccagtggtaatgctggcatttggagtgcatccgacggtga 347 Query: 1675 ccctggcctggtagctcagctcggcccgtggcgttgcgttcccttcgtcgatcctccatc 1734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 ccctggcctggtagctcagctcggcccgtggcgttgcgttcccttcgtcgatcctccatc 287 Query: 1735 ctgccgagcggatggagctgcgcaggctgtgcgagtagaaaagcagcgccagcagccaga 1794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 ctgccgagcggatggagctgcgcaggctgtgcgagtagaaaagcagcgccagcagccaga 227 Query: 1795 cgaccgccaccagaagggtgcccaggccgcaggatttgcacaggaggcgcttgatttgca 1854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 cgaccgccaccagaagggtgcccaggccgcaggatttgcacaggaggcgcttgatttgca 167 Query: 1855 tcatggatcgagattagattacgttgtgcgcttccctggctacttaagcagctactttgt 1914 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 tcatggatcgagattagattacgttgtgcgcttccctggctacttaagcagctactttgt 107 Query: 1915 cactttcatgatgatcggaataaattaaatttaatttgc 1953 ||||||||||||||||||||||||||||||||||||||| Sbjct: 106 cactttcatgatgatcggaataaattaaatttaatttgc 68 Score = 1168 bits (589), Expect = 0.0 Identities = 595/597 (99%) Strand = Plus / Minus Query: 1 gaattattcgatccgagcgaatcgctcacagcgccttgtccgagttcctcgcctccttgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2086 gaattattcgatccgagcgaatcgctcacagcgccttgtccgagttcctcgcctccttgg 2027 Query: 61 ccctgccctccgcctccgttggcttcttcagctgcacaatgtcccaggagccgcccgctc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2026 ccctgccctccgcctccgttggcttcttcagctgcacaatgtcccaggagccgcccgctc 1967 Query: 121 cgttggacttggagcacagatccagactgatgagggcgcccgtcgtgggagcagctgccc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1966 cgttggacttggagcacagatccagactgatgagggcgcccgtcgtgggagcagctgccc 1907 Query: 181 ggaggcaggtgcctttggccatgttgtagacgggactgttggcgttgcgagtgtgccgcc 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1906 ggaggcaggtgcctttggccatgttgtagacgggactgttggcgttgcgggtgtgccgcc 1847 Query: 241 actgctgatcgccgagcatctcgtggcacttgttgaccgtgacctgcgcatccccggatg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1846 actgctgatcgccgagcatctcgtggcacttgttgaccgtgacctgcgcatccccggatg 1787 Query: 301 cctccaggcacagcaacttgtccagcacaatttccgccttctccgtttcgtaccacagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1786 cctccaggcacagcaacttgtccagcacaatttccgccttctccgtttcgtaccacagtt 1727 Query: 361 gattgggtgtccttcggcaggtttgcaattgcagggagctgcccttcttccagaaaccct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1726 gattgggtgtccttcggcaggtttgcaattgcagggagctgcccttcttccagaaaccct 1667 Query: 421 tcaccttgggagccaccacggcggcacagagctccgttcccgtcagtcgcagctggaatg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1666 tcaccttgggagccaccacggcggcacagagctccgttcccgtcagtcgcagctggaatg 1607 Query: 481 tgtcgacatagttacgttttcgcgagtgccaaggctgaaagatgggcgctgccgccgact 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1606 tgtcgacatagttacgttttcgcgagtgccaaggctgaaagatgggcgctgccgccgact 1547 Query: 541 tcttggactcctcgcccggcacatgcagctctggatagacattctttagataccagg 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1546 tcttggactcctcgcccggcacatgcagctctggatagacattctttagataccagg 1490 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 55,028 Number of Sequences: 18737 Number of extensions: 55028 Number of successful extensions: 1387 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1384 Number of HSP's gapped (non-prelim): 3 length of query: 1971 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1953 effective length of database: 40,933,732 effective search space: 79943578596 effective search space used: 79943578596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY084201 AY084201|AY084201 Drosophila melanogaster SD02481 full insert cDNA. (1737 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 82,899 Number of Sequences: 18737 Number of extensions: 82899 Number of successful extensions: 14411 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14411 Number of HSP's gapped (non-prelim): 0 length of query: 1737 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1719 effective length of database: 40,933,732 effective search space: 70365085308 effective search space used: 70365085308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY084213 AY084213|AY084213 Drosophila melanogaster SD09455 full insert cDNA. (2797 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31044-RA feature: mRNA loc=3R:25032002..25034755;ID=FBan003104... 1374 0.0 >CG31044-RA feature: mRNA loc=3R:25032002..25034755;ID=FBan0031044;gene_id=FBgn0051 044;gene_sym=CG31044;sym=CG31044;scaffold=AE003768;len=27 54 Length = 2754 Score = 1374 bits (693), Expect = 0.0 Identities = 724/737 (98%) Strand = Plus / Plus Query: 1943 acaagaagccgtcaaacgccgcaactaattgatataatagttaaaataacaaactaacga 2002 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1952 acaagaagccgtcaaacgccgcaactaattgatataatagttaaaagaacaaactaacga 2011 Query: 2003 gaaagaggttgtcgtcgtcgaacgcggcgcgttggagaagtgcaaaacctttccaatttg 2062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2012 gaaagaggttgtcgtcgtcgaacgcggcgcgttggagaagtgcaaaacctttccaatttg 2071 Query: 2063 aaaatagttttcctgctatgtgtgctcgttcccacaagcgcggcaataccaactcatacc 2122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2072 aaaatagttttcctgctatgtgtgctcgttcccacaagcgcggcaataccaactcatacc 2131 Query: 2123 aacccacggctccaacaccaccagatgcagcaacaactgcatcaacagcaacatcggctc 2182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2132 aacccacggctccaacaccaccagatgcagcaacaactgcatcaacagcaacatcggctc 2191 Query: 2183 agaacaagcacaagcagcgaaagcctgcacttcgccaagcggtgattgggaaaaggggct 2242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2192 agaacaagcacaagcagcgaaagcctgcacttcgccaagcggtgattgggaaaaggggct 2251 Query: 2243 gcagctggagttggagttgcagccagagtagaagctggagctggagctggagaagatgac 2302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2252 gcagctggagttggagttgcagccagagtagaagctggagctggagctggagaagatgac 2311 Query: 2303 aatgcagcgattagagcaatgcagaacttgaactctacgacggcggcagctggaaaaatg 2362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2312 aatgcagcgattagagcaatgcagaacttgaactctacgacggcggcagctggaaaaatg 2371 Query: 2363 tttgccccgatccccgggacaccgactcagtcactcagtccgtcccaatgcgcggcattt 2422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2372 tttgccccgatccccgggacaccgactcagtcactcagtccgtcccaatgcgcggcattt 2431 Query: 2423 ccgttcggnnnnnnnngaggatgctgtcgagaaggaaggccctcgatcgattcgatgctg 2482 |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2432 ccgttcggaaaaaaaagaggatgctgtcgagaaggaaggccctcgatcgattcgatgctg 2491 Query: 2483 atgcattctgcaggggtggggggaacgtagtgatcatgtttgtagcatctaaataaagta 2542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2492 atgcattctgcaggggtggggggaacgtagtgatcatgtttgtagcatctaaataaagta 2551 Query: 2543 cctgtaatggttttcattaagtaatgcgtcgtctttggcttcttggtttatgaacacggc 2602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2552 cctgtaatggttttcattaagtaatgcgtcgtctttggcttcttggtttatgaacacggc 2611 Query: 2603 aaatatttaatgtgagataaaaaatgttcaatattcagatcattgacctgaacaacagaa 2662 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 2612 aaatatttaatgtgagataaaaaatgttcaatattcagatcattgacctaaacaacagaa 2671 Query: 2663 taactgcaggatgtcaa 2679 |||| |||||||||| Sbjct: 2672 gaacttaaggatgtcaa 2688 Score = 1340 bits (676), Expect = 0.0 Identities = 712/725 (98%), Gaps = 1/725 (0%) Strand = Plus / Plus Query: 1164 tacaatccacaggtttttgttacacttctattaaaagttaaacgaccttttcgttaagat 1223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1174 tacaatccacaggtttttgttacacttctattaaaagttaaacgaccttttcgttaagat 1233 Query: 1224 tgtcatgtcaattgaattgtattatcaaatgtttaaagcttgctgaatggagttcgtttc 1283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1234 tgtcatgtcaattgaattgtattatcaaatgtttaaagcttgctgaatggagttcgtttc 1293 Query: 1284 aaaatgctagaaagtgctattaaaaaagaggaagtagtaaaataataatcgaagtaaaag 1343 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1294 aaaatgctagaaagtgctattaaaatagaggaagtagtaaaataataatcgaagtaaaag 1353 Query: 1344 atcatacttaaaagggatcatctacaatgnnnnnnnctggtgcagttgttgttgccaacg 1403 ||||||||||||| |||| |||||||||| | |||||||||||||||||||||| Sbjct: 1354 atcatacttaaaacggataatctacaatgttttttcc-ggtgcagttgttgttgccaacg 1412 Query: 1404 acaacaagacgacacatacacatgtacctacatatgtacgtatgtatgtgcgttctgttg 1463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 acaacaagacgacacatacacatgtacctacatatgtacgtatgtatgtgcgttctgttg 1472 Query: 1464 cgtgggcgtttgagtgtaactgtaacacctgctgccgctattaacacagcatttcgctgc 1523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1473 cgtgggcgtttgagtgtaactgtaacacctgctgccgctattaacacagcatttcgctgc 1532 Query: 1524 tctccaattttaatttcaggccaaaggaatgaagccggaacacctttcaaccccgtgggc 1583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1533 tctccaattttaatttcaggccaaaggaatgaagccggaacacctttcaaccccgtgggc 1592 Query: 1584 cattgttagtgctccgtggctagggatagatggctactgtatggccacttgctgcacggc 1643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1593 cattgttagtgctccgtggctagggatagatggctactgtatggccacttgctgcacggc 1652 Query: 1644 catgaagctactcctcccacacgatttgcttcacgctcatttaaatgccaacgcaccgga 1703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1653 catgaagctactcctcccacacgatttgcttcacgctcatttaaatgccaacgcaccgca 1712 Query: 1704 gggaggagagagcagggcacttcacttcggcggctcggctggcttatttacatattttct 1763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1713 gggaggagagagcagggcacttcacttcggcggctcggctggcttatttacatattttct 1772 Query: 1764 aaatgaatatgggccccgcgagtttgcaaccccgaccggcggtggcaaagccgagaagcg 1823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1773 aaatgaatatgggccccgcgagtttgcaaccccgaccggcggtggcaaagccgagaagcg 1832 Query: 1824 cattcagttgcaacggccgcggcagctggctttccctgcactggatttccacttcctccc 1883 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1833 cattcagttgcaacggccgcggcagctggctttccctgcactggatttccacttcctcct 1892 Query: 1884 ggtcg 1888 ||||| Sbjct: 1893 ggtcg 1897 Score = 1209 bits (610), Expect = 0.0 Identities = 616/618 (99%) Strand = Plus / Plus Query: 185 tgccacagaaagtcgtgcaggggcaataatcatcatccgggcgagaaaggagcccaatag 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 tgccacagaaagtcgtgcaggggcaataatcatcatccgggcgagaaaggagcccaatag 244 Query: 245 tggggatatggggaaggatgctcttttctgactctattttgtcggcgaacatggatctag 304 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 tggggatgtggggaaggatgctcttttctgactctattttgtcggcgaacatggatctag 304 Query: 305 tgcacggtggttcatgattaagttcgtgactagatttcatgctcgtctattaagttgggt 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 tgcacggtggttcatgattaagttcgtgactagatttcatgctcgtctattaagttgggt 364 Query: 365 cagcacaacgaagagagcggagctttccatctcgcggggatcggagggagtcgttttcca 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 cagcacaacgaagagagcggagctttccatctcgcggggatcggagggagtcgttttcca 424 Query: 425 acccaacccctccggctgatttggccaattagccaaacgcattaattatgggaaaagtat 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 acccaacccctccggctgatttggccaattagccaaacgcattaattatgggaaaagtat 484 Query: 485 atttgattgacccgtgacccacatcgagtggcacacgccccgcagcagcagcaactaccg 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 atttgattgacccgtgacccacatcgagtggcacacgccccgcagcagcagcaactaccg 544 Query: 545 aaaaatgagggcgtgttgcaagatactcgtagcaagcgccaagcaccactacatggagtc 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 aaaaatgagggcgtgttgcaagatactcgtagcaagcgccaagcaccactacatggagtc 604 Query: 605 aatggcctgctgtcccgcatgctgcacatgcgctcactccgggaaaacagcagtagcctt 664 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 605 aatggcctgctgtcccgcatgctgcacatgcgctcagtccgggaaaacagcagtagcctt 664 Query: 665 gccgatttgcggtcctttatctgccaaacggactgacagccgccgccgaatgtgaaaaac 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 665 gccgatttgcggtcctttatctgccaaacggactgacagccgccgccgaatgtgaaaaac 724 Query: 725 caaagcccacggcagtcaacggtccaccaatttatgggctggtgacacgcgattaaaaat 784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 725 caaagcccacggcagtcaacggtccaccaatttatgggctggtgacacgcgattaaaaat 784 Query: 785 cgaatccgagtggcccct 802 |||||||||||||||||| Sbjct: 785 cgaatccgagtggcccct 802 Score = 563 bits (284), Expect = e-159 Identities = 314/326 (96%), Gaps = 4/326 (1%) Strand = Plus / Plus Query: 848 ggccactgggtactgggaacttggaactgcaacgccaatagattttcgtgtgaaaactcg 907 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 ggccactgggtactgggaacttggaactgcaacgccaatagattttcgtgtgaaaactcg 899 Query: 908 gtgagggttgttgttgtcgttgttaccgtggcgcctgcgggtaagtaacggctttttgcc 967 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 gcgagggttgttgttgtcgttgttaccgtggcgcctgcgggtaagtaacggctttttgcc 959 Query: 968 cgccttttgtcacatggtgagnnnnnnntaaacaaaatatcacttggaacatgcctttta 1027 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 960 cgccttttgtcacatggtgagaaaaaaataaacaaaatatcacttggaacatgcctttta 1019 Query: 1028 aatgtatgt----atatctattataaaaatggatcaacattcagggcacccaactgaacc 1083 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1020 aatgtatgtatgtatatctattataaaaatggatcaacattcagggcacccaactgaacc 1079 Query: 1084 acgaactatttagttacgcaaattcaacagaaaaccattcagtagcaaatgtcttagtga 1143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1080 acgaactatttagttacgcaaattcaacagaaaaccattcagtagcaaatgtcttagtga 1139 Query: 1144 tccataataccttgtacttgtacaat 1169 |||||||||||||||||||||||||| Sbjct: 1140 tccataataccttgtacttgtacaat 1165 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 88,686 Number of Sequences: 18737 Number of extensions: 88686 Number of successful extensions: 4942 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4925 Number of HSP's gapped (non-prelim): 13 length of query: 2797 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2778 effective length of database: 40,914,995 effective search space: 113661856110 effective search space used: 113661856110 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089251 AY089251|AY089251 Drosophila melanogaster AT03646 full insert cDNA. (2345 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CycT-RB feature: mRNA loc=3L:complement(17501379..17503757,17503... 4056 0.0 CycT-RA feature: mRNA loc=3L:complement(17501379..17503757,17503... 2010 0.0 >CycT-RB feature: mRNA loc=3L:complement(17501379..17503757,17503814..17504409, 17505253..17505298, 17505375..17506659);ID=FBan0006292;gene_id=FBgn0025455;ge ne_sym=CycT;sym=CG6292;scaffold=AE003523;len=4306 Length = 4306 Score = 4056 bits (2046), Expect = 0.0 Identities = 2061/2066 (99%) Strand = Plus / Minus Query: 1 ccattgctagcgcctggatatccaccacgcgacatcagcgggttttgaggggcactatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2357 ccattgctagcgcctggatatccaccacgcgacatcagcgggttttgaggggcactatta 2298 Query: 61 ctgtatggcggcggtgcgttcggatacattttgttgctctgggatttatccttggaggac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2297 ctgtatggcggcggtgcgttcggatacattttgttgctctgggatttatccttggaggac 2238 Query: 121 atgcccgatgcagaggaattagaggcggatggatgtgggaccggctgctgctgcggctgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2237 atgcccgatgcagaggaattagaggcggatggatgtgggaccggctgctgctgcggctgc 2178 Query: 181 tgaggcttggagcccgaagtcatcttgtggctgccgtgaggtggcatgcccacgcctacc 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2177 tggggcttggagcccgaagtcatcttgtggctgccgtgaggtggcatgcccacgcctacc 2118 Query: 241 ggcggcatgccgcgagaggatttgtgatagtccacgggcatagacggtcggccaggctgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2117 ggcggcatgccgcgagaggatttgtgatagtccacgggcatagacggtcggccaggctgc 2058 Query: 301 tggcttgaagacgacgaggatgagctgctgcgctggctgccacttcccgaggaaccgagt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2057 tggcttgaagacgacgaggatgagctgctgcgctggctgccacttcccgaggaaccgagt 1998 Query: 361 ccactgctactactacgctggtgacttgagggcattcgattgttatagcccggctgcttt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1997 ccactgctactactacgctggtgacttgagggcattcgattgttatagcccggctgcttt 1938 Query: 421 gacttgtgatccggatgagcttcgggcggcatgccaccagggtaatttggcatcttgtga 480 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1937 gacttgtgatccgtatgagcgtcgggcggcatgccaccagggtaatttggcatcttgtga 1878 Query: 481 ctggaggaagacgacgaagagctgctgcctggcactccgctcactgaggacgagcgctga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1877 ctggaggaagacgacgaagagctgctgcctggcactccgctcactgaggacgagcgctga 1818 Query: 541 tggccaccatcctgtcgtctttgctgcggcaccatagccggtggcggcagtagtgacgac 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1817 tggccaccatcctgtcgtctttgctgcggcaccatagccggtggcggcagtagtgacgac 1758 Query: 601 ggatcccgttcccgctctctctcccgttcacgatctcggtcccgatcccggctgtcgttg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1757 ggatcccgttcccgctctctctcccgttcacgatctcggtcccgatcccggctgtcgttg 1698 Query: 661 ccgtttaacagctctggtggtgtcgtgatgtttgagtggtagcccttcatcatctcggtg 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1697 ccgtttaacagctctggtggtgtcgtgatgtttgagtggtagcccttcatcatctcggtg 1638 Query: 721 atcttccagtcctcctttggtttgtccttgctgttagctgtccgattgctggctccctgg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1637 atcttccagtcctcctttggtttgtccttgctgttagctgtccgattgctggctccctgg 1578 Query: 781 gcgatcgccttgatcgagttaagcttagacttcagacgggccgggctcttctcatagata 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1577 gcgatcgccttgatcgagttaagcttagacttcagacgggccgggctcttctcatagata 1518 Query: 841 gcgatgaactcatctgtcagctgctttagcaaatccagcgagaccgtcttgtccacatag 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1517 gcgatgaactcatctgtcagctgctttagcaaatccagcgagaccgtcttgtccacatag 1458 Query: 901 tagaaccagtgcttgccctcggtcgactgggggatctcccatcgggaccacttgcaggct 960 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1457 tagaaccagtgtttgccctcggtcgactgggggatctcccatcgggaccacttgcaggct 1398 Query: 961 aggtaaatgcagaaacaggctacgaccgtggggcgatattggaggcacatcgaggtcaga 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1397 aggtaaatgcagaaacaggctacgaccgtggggcgatattggaggcacatcgaggtcaga 1338 Query: 1021 tgcaggctgttcgaggccaagaagtacgatgtctgcgccagatccttgcatgctttgacc 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1337 tgcaggctgttcgaggccaagaagtacgatgtctgcgccagatccttgcatgctttgacc 1278 Query: 1081 agctggcaggtgcgcaccacatgcgtgtgcggatgatcgatggccacatcgaagcccagc 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1277 agctggcaggtgcgcaccacatgcgtgtgcggatgatcgatggccacatcgaagcccagc 1218 Query: 1141 gtctgcaggagcacgttctcgttgaacacaagctcctgggcgagttcggcgtaattctgc 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1217 gtctgcaggagcacgttctcgttgaacacaagctcctgggcgagttcggcgtaattctgc 1158 Query: 1201 tcggtggtcggcggcaggcacttgttggcggcccgaataacatgctccagcttccgcggt 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1157 tcggtggtcggcggcaggcacttgttggcggcccgaataacatgctccagcttccgcggt 1098 Query: 1261 tgctcttctaccttggcggccaagaagaggctcgccgacgccatggagttgcgatgaaag 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1097 tgctcttctaccttggcggccaagaagaggctcgccgacgccatggagttgcgatgaaag 1038 Query: 1321 tgggtgaaggagtgaaaggcgtagaaccgatgcatgtacacaatggccgtgttgatgcac 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1037 tgggtgaaggagtgaaaggcgtagaaccgatgcatgtacacaatggccgtgttgatgcac 978 Query: 1381 agttgggacacctgcagacgctgacccatttcctgtatcagataggcggtcatctggcgg 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 977 agttgggacacctgcagacgctgacccatttcctgtatcagataggcggtcatctggcgg 918 Query: 1441 tactgcagctcatcgtcgcccttgatgccgcatcttctgcttggcgaattggccagctga 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 917 tactgcagctcatcgtcgcccttgatgccgcatcttctgcttggcgaattggccagctga 858 Query: 1501 tcgttgctgaagtaccagatcttgtccttctcgaaaggcaggttgttgttggcggtgatt 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 857 tcgttgctgaagtaccagatcttgtccttctcgaaaggcaggttgttgttggcggtgatt 798 Query: 1561 ggaatcccgctggccgaggcggccgcggaggcggatgaagaagatgaggcggtggccgcc 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 797 ggaatcccgctggccgaggcggccgcggaggcggatgaagaagatgaggcggtggccgcc 738 Query: 1621 tggggcattggcgtggctaggagactcatggttgtatgtttcctttatccgtgcagcgga 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 737 tggggcattggcgtggctaggagactcatggttgtatgtttcctttatccgtgcagcgga 678 Query: 1681 gatggggatctgggatttcgggttccgcgtggttatgcggggacctccgtttcacatgca 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 677 gatggggatctgggatttcgggttccgcgtggttatgcggggacctccgtttcacatgca 618 Query: 1741 aactgcgcctcggaatggacctagtaattcccttttggctgattcagctgtaggaactaa 1800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 aactgcgcctcggaatggacctagtaattcccttttggctgattcagctgtaggaactaa 558 Query: 1801 ctgtacaaagaggaagggagagcgctctttctttgtcggccgtgcttgagtgcgctggta 1860 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 557 ctgtacgaagaggaagggagagcgctctttctttgtcggccgtgcttgagtgcgctggta 498 Query: 1861 ttggtgtctgtgtccgtatccgtgtgcgttgctgctgtggcgggggtggcagcggtacgg 1920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 ttggtgtctgtgtccgtatccgtgtgcgttgctgctgtggcgggggtggcagcggtacgg 438 Query: 1921 aaggggcagtggggatcgcacggcacatcggctaagccacactcgatatttcgctgtttt 1980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 aaggggcagtggggatcgcacggcacatcggctaagccacactcgatatttcgctgtttt 378 Query: 1981 tgggagactccaatttgggtttggaacgaggggttaaatccgcggtccgcacactttttc 2040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 tgggagactccaatttgggtttggaacgaggggttaaatccgcggtccgcacactttttc 318 Query: 2041 cgccgccgcgtctctgcgtgtttgtt 2066 |||||||||||||||||||||||||| Sbjct: 317 cgccgccgcgtctctgcgtgtttgtt 292 Score = 484 bits (244), Expect = e-135 Identities = 244/244 (100%) Strand = Plus / Minus Query: 2081 cgtggtggagatggtatggtgtggtgaggttttctggaaactgcgactgcggcggaaacg 2140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 cgtggtggagatggtatggtgtggtgaggttttctggaaactgcgactgcggcggaaacg 218 Query: 2141 aaacgagacgaaaaacacactaaccgcgacaccaggcgacgtgttatgcaactttcgtat 2200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 aaacgagacgaaaaacacactaaccgcgacaccaggcgacgtgttatgcaactttcgtat 158 Query: 2201 caattcatagttattcgcactgctttcgccgggcactttaaccattacgggtcgtttact 2260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 caattcatagttattcgcactgctttcgccgggcactttaaccattacgggtcgtttact 98 Query: 2261 cgacgtttttaattccacaacacatcacagattccattcacacagtgacaatgacaaact 2320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 cgacgtttttaattccacaacacatcacagattccattcacacagtgacaatgacaaact 38 Query: 2321 ttgc 2324 |||| Sbjct: 37 ttgc 34 >CycT-RA feature: mRNA loc=3L:complement(17501379..17503757, 17503814..17504710);ID=FBan0006292;gene_id=FBgn0025455;ge ne_sym=CycT;sym=CG6292;scaffold=AE003523;len=3276 Length = 3276 Score = 2010 bits (1014), Expect = 0.0 Identities = 1026/1030 (99%) Strand = Plus / Minus Query: 1 ccattgctagcgcctggatatccaccacgcgacatcagcgggttttgaggggcactatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1327 ccattgctagcgcctggatatccaccacgcgacatcagcgggttttgaggggcactatta 1268 Query: 61 ctgtatggcggcggtgcgttcggatacattttgttgctctgggatttatccttggaggac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1267 ctgtatggcggcggtgcgttcggatacattttgttgctctgggatttatccttggaggac 1208 Query: 121 atgcccgatgcagaggaattagaggcggatggatgtgggaccggctgctgctgcggctgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1207 atgcccgatgcagaggaattagaggcggatggatgtgggaccggctgctgctgcggctgc 1148 Query: 181 tgaggcttggagcccgaagtcatcttgtggctgccgtgaggtggcatgcccacgcctacc 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1147 tggggcttggagcccgaagtcatcttgtggctgccgtgaggtggcatgcccacgcctacc 1088 Query: 241 ggcggcatgccgcgagaggatttgtgatagtccacgggcatagacggtcggccaggctgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1087 ggcggcatgccgcgagaggatttgtgatagtccacgggcatagacggtcggccaggctgc 1028 Query: 301 tggcttgaagacgacgaggatgagctgctgcgctggctgccacttcccgaggaaccgagt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1027 tggcttgaagacgacgaggatgagctgctgcgctggctgccacttcccgaggaaccgagt 968 Query: 361 ccactgctactactacgctggtgacttgagggcattcgattgttatagcccggctgcttt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 967 ccactgctactactacgctggtgacttgagggcattcgattgttatagcccggctgcttt 908 Query: 421 gacttgtgatccggatgagcttcgggcggcatgccaccagggtaatttggcatcttgtga 480 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 907 gacttgtgatccgtatgagcgtcgggcggcatgccaccagggtaatttggcatcttgtga 848 Query: 481 ctggaggaagacgacgaagagctgctgcctggcactccgctcactgaggacgagcgctga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 847 ctggaggaagacgacgaagagctgctgcctggcactccgctcactgaggacgagcgctga 788 Query: 541 tggccaccatcctgtcgtctttgctgcggcaccatagccggtggcggcagtagtgacgac 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 787 tggccaccatcctgtcgtctttgctgcggcaccatagccggtggcggcagtagtgacgac 728 Query: 601 ggatcccgttcccgctctctctcccgttcacgatctcggtcccgatcccggctgtcgttg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 727 ggatcccgttcccgctctctctcccgttcacgatctcggtcccgatcccggctgtcgttg 668 Query: 661 ccgtttaacagctctggtggtgtcgtgatgtttgagtggtagcccttcatcatctcggtg 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 667 ccgtttaacagctctggtggtgtcgtgatgtttgagtggtagcccttcatcatctcggtg 608 Query: 721 atcttccagtcctcctttggtttgtccttgctgttagctgtccgattgctggctccctgg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 607 atcttccagtcctcctttggtttgtccttgctgttagctgtccgattgctggctccctgg 548 Query: 781 gcgatcgccttgatcgagttaagcttagacttcagacgggccgggctcttctcatagata 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 gcgatcgccttgatcgagttaagcttagacttcagacgggccgggctcttctcatagata 488 Query: 841 gcgatgaactcatctgtcagctgctttagcaaatccagcgagaccgtcttgtccacatag 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 gcgatgaactcatctgtcagctgctttagcaaatccagcgagaccgtcttgtccacatag 428 Query: 901 tagaaccagtgcttgccctcggtcgactgggggatctcccatcgggaccacttgcaggct 960 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 tagaaccagtgtttgccctcggtcgactgggggatctcccatcgggaccacttgcaggct 368 Query: 961 aggtaaatgcagaaacaggctacgaccgtggggcgatattggaggcacatcgaggtcaga 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 aggtaaatgcagaaacaggctacgaccgtggggcgatattggaggcacatcgaggtcaga 308 Query: 1021 tgcaggctgt 1030 |||||||||| Sbjct: 307 tgcaggctgt 298 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 73,612 Number of Sequences: 18737 Number of extensions: 73612 Number of successful extensions: 4019 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4016 Number of HSP's gapped (non-prelim): 3 length of query: 2345 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2327 effective length of database: 40,933,732 effective search space: 95252794364 effective search space used: 95252794364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089252 AY089252|AY089252 Drosophila melanogaster AT03788 full insert cDNA. (2188 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 2914 0.0 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 2914 0.0 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 2914 0.0 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 2914 bits (1470), Expect = 0.0 Identities = 1485/1490 (99%) Strand = Plus / Minus Query: 388 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4878 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 4819 Query: 448 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4818 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4759 Query: 508 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4758 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4699 Query: 568 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4698 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4639 Query: 628 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4638 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 4579 Query: 688 caatgggatgtctgtagctctcggagatgggcccgtagtatggcccaggtctcggcaatg 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4578 caatgggatgtctgtagctctcggagatgggcccgtagtatggcccaggtctcggcaatg 4519 Query: 748 gtctcgtccaaatggccacactttttggcgaagatcaggcgcgcccgcaggtaaaaaccg 807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4518 gtctcgtccaaatggccacactttttggcgaagatcaggcgcgcccgcaggtaaaaaccg 4459 Query: 808 atgggccatacccactccggcccctggtggtagtttgcgccatgggctacagtgcaatcg 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4458 atgggccatacccactccggcccctggtggtagtttgcgccatgggctacagtgcaatcg 4399 Query: 868 gtggagtcatttgagttgtcatagttggccctatagttccagtcctcgggatccagcgtc 927 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 4398 gtggagtcatttgagttgtcatagttggccctatagttccagtcctcgggatccatcgtc 4339 Query: 928 ttcatgcccagcggtcccagaagatactttttggcgcgctccagtgcacgccaggcattc 987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4338 ttcatgcccagcggtcccagaagatactttttggcgcgctccagtgcacgccaggcattc 4279 Query: 988 tgaggattgcacaggtcgggagccacggtcaaggtgatggggaagttgcatcgcagctgg 1047 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4278 tgaggattgcacaggtcgggagccacggtcaaggtgatggggaagttgcatcgcagctgg 4219 Query: 1048 tagtccgtccaactctgggtggctccatagctgtccttgtagataagcttcttgttggcc 1107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4218 tagtccgtccaactctgggtggctccatagctgtccttgtagataagcttcttgttggcc 4159 Query: 1108 accgagcaggtttccgattcggatacaaagaaatacttgtcaaagttgttcttgatgcga 1167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4158 accgagcaggtttccgattcggatacaaagaaatacttgtcaaagttgttcttgatgcga 4099 Query: 1168 tccgcccactccttgtagctccacttggtcacttcgcccgatggaccctttcgttccacg 1227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4098 tccgcccactccttgtagctccacttggtcacttcgcccgatggaccctttcgttccacg 4039 Query: 1228 ccggtgtacgggataacctccttttcggctaggctttgcataaaccggagtacggcatac 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4038 ccggtgtacgggataacctccttttcggctaggctttgcataaaccggagtacggcatac 3979 Query: 1288 tggaggccaacgagctccacggctgatccgtcgcgcggcgtacttggacgtcccttgttt 1347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3978 tggaggccaacgagctccacggctgatccgtcgcgcggcgtacttggacgtcccttgttt 3919 Query: 1348 ccggccttctgtgaggatcccattttgtccatccaagtgccgcagttgaagttattgcct 1407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3918 ccggccttctgtgaggatcccattttgtccatccaagtgccgcagttgaagttattgcct 3859 Query: 1408 ccgaatacaaagccagtctccgggtgaattccgatctgattgttaaagccctggtccacc 1467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3858 ccgaatacaaagccagtctccgggtgaattccgatctgattgttaaagccctggtccacc 3799 Query: 1468 atgtgcgcatcgatctcatagcctgcattgcgctccctatactgcaagccctgaaaatgc 1527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3798 atgtgcgcatcgatctcatagcctgcattgcgctccctatactgcaagccctgaaaatgc 3739 Query: 1528 acctgcagtgcctcctgcatcacgtcgaagagaagttggtcgaaggcacctggagcatgg 1587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3738 acctgcagtgcctcctgcatcacgtcgaagagaagttggtcgaaggcacctggagcatgg 3679 Query: 1588 gcatcggcatcgtcgtacggaaatatgcgggacaccttgtcctttaggatctcggcaccc 1647 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 3678 gcatcggcatcgtcgtacggaaatatgcgggacaccttgtccttcaggatctcggcaccc 3619 Query: 1648 ttgggggcatcctccacatactgcttgatgcagtacatccaccaccagatggcatcgcgg 1707 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3618 ttgggggcatcctccacatactgcttgatgcagtacatccaccaccagatagcatcgcgg 3559 Query: 1708 cagttgaatctcggcttgctgccgctgtccaaaagattcggaatgagtccgtgtcgaagg 1767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3558 cagttgaatctcggcttgctgccgctgtccaaaagattcggaatgagtccgtgtcgaagg 3499 Query: 1768 gtctgaccaaatccaatgatgatgaagcgagcttcgttgtaacggccggtgaggaacatg 1827 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 3498 gtctgaccaaatccaatgatgatgaagcgagcctcgttgtaacggccagtgaggaacatg 3439 Query: 1828 gagccacgcagagcgatgaaggtatcacggccccagcaccgcatatagcc 1877 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3438 gagccacgcagagcgatgaaggtatcacggccccagcaccgcatatagcc 3389 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 2914 bits (1470), Expect = 0.0 Identities = 1485/1490 (99%) Strand = Plus / Minus Query: 388 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5092 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 5033 Query: 448 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5032 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4973 Query: 508 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4972 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4913 Query: 568 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4912 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4853 Query: 628 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4852 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 4793 Query: 688 caatgggatgtctgtagctctcggagatgggcccgtagtatggcccaggtctcggcaatg 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4792 caatgggatgtctgtagctctcggagatgggcccgtagtatggcccaggtctcggcaatg 4733 Query: 748 gtctcgtccaaatggccacactttttggcgaagatcaggcgcgcccgcaggtaaaaaccg 807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4732 gtctcgtccaaatggccacactttttggcgaagatcaggcgcgcccgcaggtaaaaaccg 4673 Query: 808 atgggccatacccactccggcccctggtggtagtttgcgccatgggctacagtgcaatcg 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4672 atgggccatacccactccggcccctggtggtagtttgcgccatgggctacagtgcaatcg 4613 Query: 868 gtggagtcatttgagttgtcatagttggccctatagttccagtcctcgggatccagcgtc 927 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 4612 gtggagtcatttgagttgtcatagttggccctatagttccagtcctcgggatccatcgtc 4553 Query: 928 ttcatgcccagcggtcccagaagatactttttggcgcgctccagtgcacgccaggcattc 987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4552 ttcatgcccagcggtcccagaagatactttttggcgcgctccagtgcacgccaggcattc 4493 Query: 988 tgaggattgcacaggtcgggagccacggtcaaggtgatggggaagttgcatcgcagctgg 1047 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4492 tgaggattgcacaggtcgggagccacggtcaaggtgatggggaagttgcatcgcagctgg 4433 Query: 1048 tagtccgtccaactctgggtggctccatagctgtccttgtagataagcttcttgttggcc 1107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4432 tagtccgtccaactctgggtggctccatagctgtccttgtagataagcttcttgttggcc 4373 Query: 1108 accgagcaggtttccgattcggatacaaagaaatacttgtcaaagttgttcttgatgcga 1167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4372 accgagcaggtttccgattcggatacaaagaaatacttgtcaaagttgttcttgatgcga 4313 Query: 1168 tccgcccactccttgtagctccacttggtcacttcgcccgatggaccctttcgttccacg 1227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4312 tccgcccactccttgtagctccacttggtcacttcgcccgatggaccctttcgttccacg 4253 Query: 1228 ccggtgtacgggataacctccttttcggctaggctttgcataaaccggagtacggcatac 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4252 ccggtgtacgggataacctccttttcggctaggctttgcataaaccggagtacggcatac 4193 Query: 1288 tggaggccaacgagctccacggctgatccgtcgcgcggcgtacttggacgtcccttgttt 1347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4192 tggaggccaacgagctccacggctgatccgtcgcgcggcgtacttggacgtcccttgttt 4133 Query: 1348 ccggccttctgtgaggatcccattttgtccatccaagtgccgcagttgaagttattgcct 1407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4132 ccggccttctgtgaggatcccattttgtccatccaagtgccgcagttgaagttattgcct 4073 Query: 1408 ccgaatacaaagccagtctccgggtgaattccgatctgattgttaaagccctggtccacc 1467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4072 ccgaatacaaagccagtctccgggtgaattccgatctgattgttaaagccctggtccacc 4013 Query: 1468 atgtgcgcatcgatctcatagcctgcattgcgctccctatactgcaagccctgaaaatgc 1527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4012 atgtgcgcatcgatctcatagcctgcattgcgctccctatactgcaagccctgaaaatgc 3953 Query: 1528 acctgcagtgcctcctgcatcacgtcgaagagaagttggtcgaaggcacctggagcatgg 1587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3952 acctgcagtgcctcctgcatcacgtcgaagagaagttggtcgaaggcacctggagcatgg 3893 Query: 1588 gcatcggcatcgtcgtacggaaatatgcgggacaccttgtcctttaggatctcggcaccc 1647 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 3892 gcatcggcatcgtcgtacggaaatatgcgggacaccttgtccttcaggatctcggcaccc 3833 Query: 1648 ttgggggcatcctccacatactgcttgatgcagtacatccaccaccagatggcatcgcgg 1707 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3832 ttgggggcatcctccacatactgcttgatgcagtacatccaccaccagatagcatcgcgg 3773 Query: 1708 cagttgaatctcggcttgctgccgctgtccaaaagattcggaatgagtccgtgtcgaagg 1767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3772 cagttgaatctcggcttgctgccgctgtccaaaagattcggaatgagtccgtgtcgaagg 3713 Query: 1768 gtctgaccaaatccaatgatgatgaagcgagcttcgttgtaacggccggtgaggaacatg 1827 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 3712 gtctgaccaaatccaatgatgatgaagcgagcctcgttgtaacggccagtgaggaacatg 3653 Query: 1828 gagccacgcagagcgatgaaggtatcacggccccagcaccgcatatagcc 1877 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3652 gagccacgcagagcgatgaaggtatcacggccccagcaccgcatatagcc 3603 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 2914 bits (1470), Expect = 0.0 Identities = 1485/1490 (99%) Strand = Plus / Minus Query: 388 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4900 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 4841 Query: 448 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4840 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4781 Query: 508 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4780 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4721 Query: 568 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4720 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4661 Query: 628 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4660 gtgcgacaggagtcaccgcagtaggagccattatcgttggtcaactcgggcaatccgcgc 4601 Query: 688 caatgggatgtctgtagctctcggagatgggcccgtagtatggcccaggtctcggcaatg 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4600 caatgggatgtctgtagctctcggagatgggcccgtagtatggcccaggtctcggcaatg 4541 Query: 748 gtctcgtccaaatggccacactttttggcgaagatcaggcgcgcccgcaggtaaaaaccg 807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4540 gtctcgtccaaatggccacactttttggcgaagatcaggcgcgcccgcaggtaaaaaccg 4481 Query: 808 atgggccatacccactccggcccctggtggtagtttgcgccatgggctacagtgcaatcg 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4480 atgggccatacccactccggcccctggtggtagtttgcgccatgggctacagtgcaatcg 4421 Query: 868 gtggagtcatttgagttgtcatagttggccctatagttccagtcctcgggatccagcgtc 927 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 4420 gtggagtcatttgagttgtcatagttggccctatagttccagtcctcgggatccatcgtc 4361 Query: 928 ttcatgcccagcggtcccagaagatactttttggcgcgctccagtgcacgccaggcattc 987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4360 ttcatgcccagcggtcccagaagatactttttggcgcgctccagtgcacgccaggcattc 4301 Query: 988 tgaggattgcacaggtcgggagccacggtcaaggtgatggggaagttgcatcgcagctgg 1047 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4300 tgaggattgcacaggtcgggagccacggtcaaggtgatggggaagttgcatcgcagctgg 4241 Query: 1048 tagtccgtccaactctgggtggctccatagctgtccttgtagataagcttcttgttggcc 1107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4240 tagtccgtccaactctgggtggctccatagctgtccttgtagataagcttcttgttggcc 4181 Query: 1108 accgagcaggtttccgattcggatacaaagaaatacttgtcaaagttgttcttgatgcga 1167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4180 accgagcaggtttccgattcggatacaaagaaatacttgtcaaagttgttcttgatgcga 4121 Query: 1168 tccgcccactccttgtagctccacttggtcacttcgcccgatggaccctttcgttccacg 1227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4120 tccgcccactccttgtagctccacttggtcacttcgcccgatggaccctttcgttccacg 4061 Query: 1228 ccggtgtacgggataacctccttttcggctaggctttgcataaaccggagtacggcatac 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4060 ccggtgtacgggataacctccttttcggctaggctttgcataaaccggagtacggcatac 4001 Query: 1288 tggaggccaacgagctccacggctgatccgtcgcgcggcgtacttggacgtcccttgttt 1347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4000 tggaggccaacgagctccacggctgatccgtcgcgcggcgtacttggacgtcccttgttt 3941 Query: 1348 ccggccttctgtgaggatcccattttgtccatccaagtgccgcagttgaagttattgcct 1407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3940 ccggccttctgtgaggatcccattttgtccatccaagtgccgcagttgaagttattgcct 3881 Query: 1408 ccgaatacaaagccagtctccgggtgaattccgatctgattgttaaagccctggtccacc 1467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3880 ccgaatacaaagccagtctccgggtgaattccgatctgattgttaaagccctggtccacc 3821 Query: 1468 atgtgcgcatcgatctcatagcctgcattgcgctccctatactgcaagccctgaaaatgc 1527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3820 atgtgcgcatcgatctcatagcctgcattgcgctccctatactgcaagccctgaaaatgc 3761 Query: 1528 acctgcagtgcctcctgcatcacgtcgaagagaagttggtcgaaggcacctggagcatgg 1587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3760 acctgcagtgcctcctgcatcacgtcgaagagaagttggtcgaaggcacctggagcatgg 3701 Query: 1588 gcatcggcatcgtcgtacggaaatatgcgggacaccttgtcctttaggatctcggcaccc 1647 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 3700 gcatcggcatcgtcgtacggaaatatgcgggacaccttgtccttcaggatctcggcaccc 3641 Query: 1648 ttgggggcatcctccacatactgcttgatgcagtacatccaccaccagatggcatcgcgg 1707 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3640 ttgggggcatcctccacatactgcttgatgcagtacatccaccaccagatagcatcgcgg 3581 Query: 1708 cagttgaatctcggcttgctgccgctgtccaaaagattcggaatgagtccgtgtcgaagg 1767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3580 cagttgaatctcggcttgctgccgctgtccaaaagattcggaatgagtccgtgtcgaagg 3521 Query: 1768 gtctgaccaaatccaatgatgatgaagcgagcttcgttgtaacggccggtgaggaacatg 1827 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 3520 gtctgaccaaatccaatgatgatgaagcgagcctcgttgtaacggccagtgaggaacatg 3461 Query: 1828 gagccacgcagagcgatgaaggtatcacggccccagcaccgcatatagcc 1877 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3460 gagccacgcagagcgatgaaggtatcacggccccagcaccgcatatagcc 3411 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 47,748 Number of Sequences: 18737 Number of extensions: 47748 Number of successful extensions: 999 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 993 Number of HSP's gapped (non-prelim): 6 length of query: 2188 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2170 effective length of database: 40,933,732 effective search space: 88826198440 effective search space used: 88826198440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089271 AY089271|AY089271 Drosophila melanogaster AT07338 full insert cDNA. (1543 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 33,822 Number of Sequences: 18737 Number of extensions: 33822 Number of successful extensions: 666 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 666 Number of HSP's gapped (non-prelim): 0 length of query: 1543 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1525 effective length of database: 40,933,732 effective search space: 62423941300 effective search space used: 62423941300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089335 AY089335|AY089335 Drosophila melanogaster AT14183 full insert cDNA. (1828 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG12717-RA feature: mRNA loc=X:complement(12491958..12494265);ID... 904 0.0 >CG12717-RA feature: mRNA loc=X:complement(12491958..12494265);ID=FBan0012717;gene_ id=FBgn0030420;gene_sym=CG12717;sym=CG12717;scaffold=AE00 3490;len=2308 Length = 2308 Score = 904 bits (456), Expect = 0.0 Identities = 652/715 (91%), Gaps = 8/715 (1%) Strand = Plus / Minus Query: 812 ctctttaaaattctccttctcgctatcctc---atccatcactagttggctatttaatgt 868 ||||||| ||||||||| |||||||||||| ||||||||| ||||||| ||||||||| Sbjct: 2239 ctctttagaattctcctcctcgctatcctcctcatccatcaccagttggccatttaatgt 2180 Query: 869 gggaaacttaatgaccggcaaaattttgcgctgctgattgctttcattcattagcttctg 928 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2179 cggaaacttaatgaccggcaaaattttgcgctgctgattgctttcattcataagcttctt 2120 Query: 929 ggtgagattagcgatatccttacggttcttagttactgtgagcatgtcaaaccaattgct 988 | |||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||| Sbjct: 2119 gatgagattagcgatatcctcacgcttcttggttactgtgagcaggtcaaaccaattgct 2060 Query: 989 cagctccccaatgggcagtgtatagtcgatgaagggttttgtaaagaattgctccacata 1048 ||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| Sbjct: 2059 cagctccttaatgggcagtgtatagtcgttgatgggttttgtgaagaattgctccacata 2000 Query: 1049 ctgcagcagatagaggccgcaatctgtgagattctgctgctgcggcacctctactttatg 1108 |||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||| Sbjct: 1999 ttgcagcagatagaggccgcaatctgtaagattctgctgttgcggcacctccacactatg 1940 Query: 1109 agcgggcatattatccttgttgaagatatgcgccagcgcattcggatactttgccttgt- 1167 | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| Sbjct: 1939 accgggcatattatccttgttaaagacatgcgccagcgcattcggatacttggccttgtg 1880 Query: 1168 ---acaggtgagacaatcccgcaatatggcaatcgctcgatgtcgtaaggtgaccgccaa 1224 |||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||| Sbjct: 1879 ctcacaggtgagataatcccgcaatatggcaatcgctcgatgtcttgaggtgactgccaa 1820 Query: 1225 cgaatcgaaaataagactcaa-tgctgtttgattggaatatcatcgcagagtgtcgtctg 1283 ||||||||||||||| |||| |||||||||| ||||||||||| | |||||||||||| Sbjct: 1819 cgaatcgaaaataagtatcaacggctgtttgatgggaatatcatcactgagtgtcgtctg 1760 Query: 1284 tacattattattgtgtaccgacgggattccaaggtttggataacatatgatggccagtat 1343 ||||||||||||| |||| |||| ||| |||||||||||||||||| ||||||||||| Sbjct: 1759 cacattattattgtttaccaccgggcttctaaggtttggataacatataatggccagtat 1700 Query: 1344 ccaatgggactgctcgttgaatggtattatgatgaagtccttgtcgaatatattcacgtt 1403 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 1699 ccaatgggactgctcattgaatggtattataatgaagtccttgtcgaatatattgacgtt 1640 Query: 1404 tcgtgtccactcctcaaccctttcgtgacgcttctgggctgccgtcagcttcatatttgt 1463 ||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||| | Sbjct: 1639 tcgtgtccacttctcaaccctttcgtgacgcttctgggccgccgtctgcttcgtatttct 1580 Query: 1464 gggattcgttcgtgtggtcaatctcttgtggaaaaatgtgctaaagatgtgcgtc 1518 |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct: 1579 gggattcgttcgtgtggtcaatcttttgtggaaaaacgtgctaaagatatgcgtc 1525 Score = 817 bits (412), Expect = 0.0 Identities = 652/733 (88%), Gaps = 23/733 (3%) Strand = Plus / Plus Query: 86 tgaagagctctctccaacggttgtcaaaccatcaaagactttggtggccaacaatggtcg 145 |||||||| ||| || ||||||||||||||||| ||||| |||||||||||||||| | Sbjct: 682 tgaagagcactcccctgcggttgtcaaaccatcagagactgcggtggccaacaatggttg 741 Query: 146 ccagccagctgcaagtgcaaccaaaggcaagaagcacaagaaaagtccttgctc---tcc 202 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 742 ccagccagctgcaagtgcaaccaaaggcaagaagcacaagaaaagtccttgcgggagtcc 801 Query: 203 gggagacaccaatgctggccaagtgatatcgtcggcggatgcagacgcctatactaatac 262 |||||| | ||||| |||||||||||||| |||||||||| ||||||| |||||||||| Sbjct: 802 gggagaaaacaatgatggccaagtgatattgtcggcggatcaagacgccaatactaatac 861 Query: 263 caaggccaagaaacagaagaagtgccattctggaaaggataacaatggctatcaagctgc 322 |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| Sbjct: 862 caaggccaagaaacagaagaagtgccatattgcaaaggataacaatggaattcaagctgc 921 Query: 323 tcgttctcaagacaaccaaggttcatctggcaataaacaggaaagtcacaactctacggc 382 | ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| Sbjct: 922 tagttctcatgacaaccctagttcatctggcaataaacagggaagtcacaactccacggc 981 Query: 383 tataacctccaattcttcaaagacgagtaatggtcttcagggcatgcaaccagct----- 437 |||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||| Sbjct: 982 tataacctccaattctacaatgacgagtaatggtcttcggggcgtgcaaccagctgaaga 1041 Query: 438 ----cccgcaatctcccagtggatccagtcgaggaaccatgccgcacatgcctctgttag 493 ||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 1042 tgctcccgcaatctcccagtggatccagtcgaggaacaatgccg---------ctgttag 1092 Query: 494 caataaatcggaaaagacagctggtggatctcaatcgcgggtgcaatcgaatgttgcatc 553 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 caagaaatcggaagagacagctggtggatctcaatcgcgggtgcaatcgaatgttgcatc 1152 Query: 554 catatcctcgccagcgatgaaagcaactagtaacgcagctatacccacaccagcagaacg 613 |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 1153 catatcctcgccagcggtgaaagcaactagcgacgctgctatacccacaccagcagaacg 1212 Query: 614 cgcagagcggagtcacctgcgccggaatcgcaagtggatactaagcagggacgttaatga 673 ||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||| |||| Sbjct: 1213 cgcagagcgtagtcgcctgcgccgaaatcgcaattggatactaagcagggacgttgatga 1272 Query: 674 agatgccgtggcgctggtgagcagcggcgatgaggagaccaccgctgccgacgatggcca 733 ||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 1273 agatgccgtggtgctggtgagcagcggtgatgaggagaccaccgccgccgatgatggcca 1332 Query: 734 aac--agagaggactctcaaccgacgagaatcaaacccttttcacattttcgccaatcgg 791 ||| ||||| |||| ||| |||| |||||||||||||||||||||| | |||||| || Sbjct: 1333 aaccgagagaagactttcacccgatgagaatcaaacccttttcacatatccgccaactgg 1392 Query: 792 taccggtggcctg 804 ||||||||||||| Sbjct: 1393 taccggtggcctg 1405 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 43,080 Number of Sequences: 18737 Number of extensions: 43080 Number of successful extensions: 965 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 953 Number of HSP's gapped (non-prelim): 8 length of query: 1828 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1810 effective length of database: 40,933,732 effective search space: 74090054920 effective search space used: 74090054920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089388 AY089388|AY089388 Drosophila melanogaster AT21289 full insert cDNA. (1415 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 38,559 Number of Sequences: 18737 Number of extensions: 38559 Number of successful extensions: 1668 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1668 Number of HSP's gapped (non-prelim): 0 length of query: 1415 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1397 effective length of database: 40,933,732 effective search space: 57184423604 effective search space used: 57184423604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089395 AY089395|AY089395 Drosophila melanogaster AT22150 full insert cDNA. (1080 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 22,655 Number of Sequences: 18737 Number of extensions: 22655 Number of successful extensions: 685 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 685 Number of HSP's gapped (non-prelim): 0 length of query: 1080 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1062 effective length of database: 40,933,732 effective search space: 43471623384 effective search space used: 43471623384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089430 AY089430|AY089430 Drosophila melanogaster AT25114 full insert cDNA. (1774 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value MESR6-RA feature: mRNA loc=3L:join(19041551..19042199,19042542..... 1118 0.0 >MESR6-RA feature: mRNA loc=3L:join(19041551..19042199, 19042542..19043639);ID=FBan0006818;gene_id=FBgn0036846;ge ne_sym=MESR6;sym=CG6818;scaffold=AE003518;len=1747 Length = 1747 Score = 1118 bits (564), Expect = 0.0 Identities = 567/568 (99%) Strand = Plus / Minus Query: 170 ctgatcggccagtttcacaatcttggcgtacacttcgggcgtgaccacggtctcgtcagg 229 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1215 ctgatcggccagtttcacaatcttggcgtacacttcgggcgtgaccacggtctcgtccgg 1156 Query: 230 cttttccagtccctcgaaattgcgctcctcctccagatgccagaaaatcgtcttcagtgc 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1155 cttttccagtccctcgaaattgcgctcctcctccagatgccagaaaatcgtcttcagtgc 1096 Query: 290 atccaactgagtctgtcgcctctctgccgtggccaaataatctgctatagtagccgtgcc 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1095 atccaactgagtctgtcgcctctctgccgtggccaaataatctgctatagtagccgtgcc 1036 Query: 350 cgacttcttcaccttctccacgctttcgaagtggaagatctcctttagctgattgtagca 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1035 cgacttcttcaccttctccacgctttcgaagtggaagatctcctttagctgattgtagca 976 Query: 410 atcggcatccttgtatatttccaagaaggggttggaggtgctgaaaaagtcgaggtctat 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 975 atcggcatccttgtatatttccaagaaggggttggaggtgctgaaaaagtcgaggtctat 916 Query: 470 gtccagcacgaatcccttggcgtccttctccgttaggaattcgttcggattgaggctttc 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 915 gtccagcacgaatcccttggcgtccttctccgttaggaattcgttcggattgaggctttc 856 Query: 530 gttgtctgcatcgtgaacctgcagctccacgctcttggcatcctgcagatcctccgtagt 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 855 gttgtctgcatcgtgaacctgcagctccacgctcttggcatcctgcagatcctccgtagt 796 Query: 590 gcagtagttgccgtcggcaataaagtagtccaacggacagtccactccaatgcgatcgtc 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 795 gcagtagttgccgtcggcaataaagtagtccaacggacagtccactccaatgcgatcgtc 736 Query: 650 cttttgtccaaccttaaagtcgtgcctgccagtgggcagctgctggcaccatgagttctt 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 735 cttttgtccaaccttaaagtcgtgcctgccagtgggcagctgctggcaccatgagttctt 676 Query: 710 cagccacacgacgcggttgaaatgtcct 737 |||||||||||||||||||||||||||| Sbjct: 675 cagccacacgacgcggttgaaatgtcct 648 Score = 957 bits (483), Expect = 0.0 Identities = 500/508 (98%) Strand = Plus / Minus Query: 742 gtggaactggcggcaatgtgccgtggaatgaccagatccggatgcgagtcgaagtggaca 801 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 581 gtggaactggcggcaatgtgccgtggaatgaccagatccggatgcgagtcgaagtggaca 522 Query: 802 agggtgttgttctgcagcggaaggtggcgggtggcaaagcagcggtagatgaactccagc 861 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 521 agggtgttgttctgcagcggaaggtggcgggtggcaaagcagcggtagatgaactccagc 462 Query: 862 acatcgttgtggtagtcgacgataaagacggggatgcgctggaaatgccttgggctgatg 921 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 461 acatcgttgtggtagtcgacgataaagacggggatgcgctggaaatgccttgggctgatg 402 Query: 922 gtgccgccaatctggacgatgccctcgccatcatcctcctcctcatcaacgctctcctcg 981 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 401 gtgccgccaatctggacgatgccctcgccatcatcctcctcctcatcaacgctctcctcg 342 Query: 982 ctatcctcgtcttcctcccgattctcctccttttcgtctgcagtcttttgtctctttgtt 1041 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 341 ctatcctcgtcttcctcccgattctcctccttttcgtctgcagtcttttgtctctttgtt 282 Query: 1042 ggcggcgcctcttctcccccacccgccgcaacccactcacccgaagtcggctcccatttc 1101 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 281 ggcggcgcctcttctcccccacccgccgcaacccactctcccgaagtcggctcccatttc 222 Query: 1102 ttcgaactttcgggactttcacttggcgatagnnnnnnnagagcagccgcggcactctcc 1161 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 221 ttcgaactttcgggactttcacttggcgatagtttttttagagcagccgcggcactctcc 162 Query: 1162 tggtccagcgtatccgattccatttccctcgggattactttgactgtacaactgggtcct 1221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 161 tggtccagcgtatccgattccatttccctcgggattactttgactgtacaactgggtcct 102 Query: 1222 tagcacactgttcaattacttgcacggt 1249 |||||||||||||||||||||||||||| Sbjct: 101 tagcacactgttcaattacttgcacggt 74 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 45,789 Number of Sequences: 18737 Number of extensions: 45789 Number of successful extensions: 1232 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1228 Number of HSP's gapped (non-prelim): 3 length of query: 1774 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1756 effective length of database: 40,933,732 effective search space: 71879633392 effective search space used: 71879633392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089476 AY089476|AY089476 Drosophila melanogaster AT28810 full insert cDNA. (2468 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15354-RA feature: mRNA loc=2L:complement(2001911..2002751,2003... 1296 0.0 >CG15354-RA feature: mRNA loc=2L:complement(2001911..2002751,2003045..2003176, 2003838..2003978, 2004334..2004625);ID=FBan0015354;gene_id=FBgn0031383;gene _sym=CG15354;sym=CG15354;scaffold=AE003584;len=1406 Length = 1406 Score = 1296 bits (654), Expect = 0.0 Identities = 666/670 (99%) Strand = Plus / Minus Query: 301 ctgcttagcagatcccctgacagtacgcaggataagttcatattccccttgatgtgaatc 360 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1235 ctgcttagcagatcccctgacagtacgcaggataagtttatattccccttgatgtgaatc 1176 Query: 361 cccttttggctcgaagtgctcagtcgggtaatatgttcattatgaaatttgcatcaataa 420 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1175 cccttttggctcgaaatgctcagtcgggtaatatgttcattatgaaatttgcatcaataa 1116 Query: 421 tttgcatttcccagctacttgaccctgacatccggaaggaattctcatcgctgtgctgag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 tttgcatttcccagctacttgaccctgacatccggaaggaattctcatcgctgtgctgag 1056 Query: 481 gggataaggataacttcaatcggaactttgctcggagctggaaatcttattaaagccaac 540 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1055 gggataaggataacttcaatcgggactttgctcggagctggaaatcttattaaagccaac 996 Query: 541 gaagcatgttcactccctagggggcaaaacggaggggactcgagcaactttaagctgcca 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 995 gaagcatgttcactccctagggggcaaaacggaggggactcgagcaactttaagctgcca 936 Query: 601 tcggcaaagattttgttgcacagctcctttcacttccgcaaaactaaggaactaaggcac 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 935 tcggcaaagattttgttgcacagctcctttcacttccgcaaaactaaggaactaaggcac 876 Query: 661 tgaggggaccgaaagcagccaaatgcaattgccaacaagtgtggtgcaaaataaattcca 720 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 875 tgaggggaccgaaagcagccaaatgcaattgccaacaagtggggtgcaaaataaattcca 816 Query: 721 gattaaatattatcgagtgcggcacgtcctgcgtgtgtcctgctccgttagcctagccgg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 815 gattaaatattatcgagtgcggcacgtcctgcgtgtgtcctgctccgttagcctagccgg 756 Query: 781 agtgcatcggagtgaggcggagtaaggcgacacttacgttgtatccttagcaaaattgtt 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 755 agtgcatcggagtgaggcggagtaaggcgacacttacgttgtatccttagcaaaattgtt 696 Query: 841 atctgatcggagtccgagaaagtcggcgttatgcgcatcgcccgacacgtgtactccccg 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 695 atctgatcggagtccgagaaagtcggcgttatgcgcatcgcccgacacgtgtactccccg 636 Query: 901 gcatccgcttggctcacattcctgatgtacagaccgttggacaggcgattgtgcttcgtc 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 635 gcatccgcttggctcacattcctgatgtacagaccgttggacaggcgattgtgcttcgtc 576 Query: 961 gagttgacgg 970 |||||||||| Sbjct: 575 gagttgacgg 566 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 53,985 Number of Sequences: 18737 Number of extensions: 53985 Number of successful extensions: 1164 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1160 Number of HSP's gapped (non-prelim): 4 length of query: 2468 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2450 effective length of database: 40,933,732 effective search space: 100287643400 effective search space used: 100287643400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089516 AY089516|AY089516 Drosophila melanogaster GM03978 full insert cDNA. (1692 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 36,110 Number of Sequences: 18737 Number of extensions: 36110 Number of successful extensions: 1478 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1478 Number of HSP's gapped (non-prelim): 0 length of query: 1692 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1674 effective length of database: 40,933,732 effective search space: 68523067368 effective search space used: 68523067368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089536 AY089536|AY089536 Drosophila melanogaster LD05680 full insert cDNA. (1906 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8728-RA feature: mRNA loc=2R:complement(2997758..2998044,29981... 3703 0.0 >CG8728-RA feature: mRNA loc=2R:complement(2997758..2998044,2998105..2998609, 2998663..2998803,2998860..2999276,2999338..2999716, 2999801..3000070);ID=FBan0008728;gene_id=FBgn0033235;gene _sym=CG8728;sym=CG8728;scaffold=AE003839;len=1999 Length = 1999 Score = 3703 bits (1868), Expect = 0.0 Identities = 1882/1889 (99%) Strand = Plus / Minus Query: 1 ttttgggaattttggtttttagccaatttaaacttaacacggttgcccttcgcacaatat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1994 ttttgggaattttggtttttagccaatttaaacttaacacggttgcccttcgcacaatat 1935 Query: 61 tgtaaacaaagcgaaatgatatccaatggaggcggtctcacacccagcgctatttgaaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1934 tgtaaacaaagcgaaatgatatccaatggaggcggtctcacacccagcgctatttgaaca 1875 Query: 121 aggaaagcctacgtcccagcccggtacgtcctgaaccactgaccgcgttggtgatgtggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1874 aggaaagcctacgtcccagcccggtacgtcctgaaccactgaccgcgttggtgatgtggc 1815 Query: 181 tcatctcgggaagattgtggatgtcgccgcgggcggccacagaaggcggcgagctcagga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1814 tcatctcgggaagattgtggatgtcgccgcgggcggccacagaaggcggcgagctcagga 1755 Query: 241 gacgttgagcaacgcgttggatatcggcggcagttacactttcaatttccttgataaaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1754 gacgttgagcaacgcgttggatatcggcggcagttacactttcaatttccttgataaaat 1695 Query: 301 gctgcggtcgttttcgctgccccgtcaccagcacttggcggcccacgtcctcgaacacaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1694 gctgcggtcgttttcgctgccccgtcaccagcacttggcggcccacgtcctcgaacacaa 1635 Query: 361 cgggtctcgactccaggttcattagtaacatggactgaagctggatcttcgagcgcatta 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1634 cgggtctcgactccaggttcattagtaacatggactgaagctggatcttcgagcgcatta 1575 Query: 421 gctcttcacggcctggctctgcggccatgcccatcatctcgcgggtcaggacctcgacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1574 gctcttcacggcctggctctgcggccatgcccatcatctcgcgggtcaggacctcgacca 1515 Query: 481 tgtcgttcatgtgctgtggcggtgcgctaccgtgaacacagaagagaccacaatcgccgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1514 tgtcgttcatgtgctgtggcggtgcgctaccgtgaacacagaagagaccacaatcgccgt 1455 Query: 541 aagcatgattgtaggccgtggcgctgtacatccagtggtagcggtttagcaccttggtat 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1454 aagcatgattgtaggccgtggcgctgtacatccagtggtagcggtttagcaccttggtat 1395 Query: 601 acaggcgcgagtacatgcccttgccaggaccgcctgcggagaaggatccaccaccgccca 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1394 acaggcgcgagtacatgcccttgccaggaccgcctgcggagaaggatccaccaccgccca 1335 Query: 661 tcatgatattcaggacgcacaggggaacgaagtccttgtcctggtgggaacagccttcaa 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 tcatgatattcaggacgcacaggggaacgaagtccttgtcctggtgggaacagccttcaa 1275 Query: 721 atccgagaattacatgggccagctctggtagcccagcggccgcatagattgggatttcgc 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 atccgagaattacatgggccagctctggtagcccagcggccgcatagattgggatttcgc 1215 Query: 781 attgttcctttactaatccgccagtgtattgtgcaatagacgtatctacttgcttaggtc 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 attgttcctttactaatccgccagtgtattgtgcaatagacgtatctacttgcttaggtc 1155 Query: 841 ccgagtcctccagggcttccgtttcccagatggctttgtcctccacaaagtatctttgca 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 ccgagtcctccagggcttccgtttcccagatggctttgtcctccacaaagtatctttgca 1095 Query: 901 catggctaaccagctcatcatgatccacgcctacaccagcgatgaccatgcgcttgggag 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 catggctaaccagctcatcatgatccacgcctacaccagcgatgaccatgcgcttgggag 1035 Query: 961 agtgatggtacttaaggtagttcattagcacattgcggtttatgtggtccaggttctcaa 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1034 agtgatggtacttaaggtagttcattagcacattgcggtttatgtggtccaggttctcaa 975 Query: 1021 ggggacatagcttgggcaggcccaaggtattgtccctgaatgctgccgcgtggatcatgt 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 ggggacatagcttgggcaggcccaaggtattgtccctgaatgctgccgcgtggatcatgt 915 Query: 1081 ccatcagtattggctcctgctcaggccgcatgcccagtgtctccagctcaaagttgacgg 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 914 ccatcagtattggctcctgctcaggccgcatgcccagtgtctccagctcaaagttgacgg 855 Query: 1141 cccgcctggccagactcacctcctggtcgctaagtgtgggccgcaaagtgacgtccgcca 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 854 cccgcctggccagactcacctcctggtcgctaagtgtgggccgcaaagtgacgtccgcca 795 Query: 1201 gcagacgcgtcacggaatcaatagcccggctgtcgatgctggcggcataaatgagcgtgt 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 794 gcagacgcgtcacggaatcaatagcccggctgtcgatgctggcggcataaatgagcgtgt 735 Query: 1261 cccgcgagctctgacagtcgcaaatgcctccgttcttctccagctccttaagtatggcgt 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 734 cccgcgagctctgacagtcgcaaatgcctccgttcttctccagctccttaagtatggcgt 675 Query: 1321 ccttgttgggaaagttgactgtggaattaaaagctagcttttcgagaaagtgcgacacgc 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 ccttgttgggaaagttgactgtggaattaaaagctagcttttcgagaaagtgcgacacgc 615 Query: 1381 cgctggggtaagcgacttcgtagcgcggcccggagtcgataaccaggcccacagtgcaga 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 cgctggggtaagcgacttcgtagcgcggcccggagtcgataaccaggcccacagtgcaga 555 Query: 1441 actgtccgtaccgcggttccgaggcaatccgcagaccgttcggcagcgtcgttaccttcg 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 actgtccgtaccgcggttccgaggcaatccgcagaccgttcggcagcgtcgttaccttcg 495 Query: 1501 taatggcgctttccgccagtggagctgcgtaaacggcctccggcaggttgggcagtggct 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 taatggcgctttccgccagtggagctgcgtaaacggcctccggcaggttgggcagtggct 435 Query: 1561 cggtgagaggtggcaggtgggtgacaatctccttggaaggcgtgttcactttctgtggcc 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 cggtgagaggtggcaggtgggtgacaatctccttggaaggcgtgttcactttctgtggcc 375 Query: 1621 catcacttgtacgcacgccgccggtgatctgtccgattcctgtgccactgcccacctcgt 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 catcacttgtacgcacgccgccggtgatctgtccgattcctgtgccactgcccacctcgt 315 Query: 1681 cgccacccagactggtcaccttggtggccataaggcgtggaaacgtgcgccaggtgtgcc 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 cgccacccagactggtcaccttggtggccataaggcgtggaaacgtgcgccaggtgtgcc 255 Query: 1741 tgagctttttcagcatgccgatgctgcgcccgttcatcatgtgttggtgatttgggtatt 1800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 tgagctttttcagcatgccgatgctgcgcccgttcatcatgtgttggtgatttgggtatt 195 Query: 1801 ataacggtatttacagaattatgtgaattatatttgaatttgattcagaaacacannnnn 1860 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 ataacggtatttacagaattatgtgaattatatttgaatttgattcagaaacacattttt 135 Query: 1861 nnacgcttttaaacgaatgaatttcgaag 1889 ||||||||||||||||||||||||||| Sbjct: 134 ttacgcttttaaacgaatgaatttcgaag 106 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 41,702 Number of Sequences: 18737 Number of extensions: 41702 Number of successful extensions: 988 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 985 Number of HSP's gapped (non-prelim): 2 length of query: 1906 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1888 effective length of database: 40,933,732 effective search space: 77282886016 effective search space used: 77282886016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089537 AY089537|AY089537 Drosophila melanogaster LD07701 full insert cDNA. (1422 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,000 Number of Sequences: 18737 Number of extensions: 28000 Number of successful extensions: 660 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 660 Number of HSP's gapped (non-prelim): 0 length of query: 1422 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1404 effective length of database: 40,933,732 effective search space: 57470959728 effective search space used: 57470959728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089538 AY089538|AY089538 Drosophila melanogaster LD08911 full insert cDNA. (1682 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9253-RA feature: mRNA loc=2L:join(21112976..21113247,21113308.... 3283 0.0 >CG9253-RA feature: mRNA loc=2L:join(21112976..21113247,21113308..21113566, 21113756..21114895);ID=FBan0009253;gene_id=FBgn0032919;ge ne_sym=CG9253;sym=CG9253;scaffold=AE003669;len=1671 Length = 1671 Score = 3283 bits (1656), Expect = 0.0 Identities = 1656/1656 (100%) Strand = Plus / Minus Query: 11 actttctatttaaaacttttattacattattcttagagtagcactaataaaaatcgagac 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1667 actttctatttaaaacttttattacattattcttagagtagcactaataaaaatcgagac 1608 Query: 71 tgatctgacctatctcttctgcttgcccttgctccaattctttttgccaaagctctttct 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1607 tgatctgacctatctcttctgcttgcccttgctccaattctttttgccaaagctctttct 1548 Query: 131 tccaccaccgccagtgccgcccatcggtttcatgcgtttgcgtgcgcccgtgaagttctc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1547 tccaccaccgccagtgccgcccatcggtttcatgcgtttgcgtgcgcccgtgaagttctc 1488 Query: 191 cgaatcatcgtgggtgtccccgcccctcttgtgaccaccccttgtatcttccagatcctt 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1487 cgaatcatcgtgggtgtccccgcccctcttgtgaccaccccttgtatcttccagatcctt 1428 Query: 251 cagctccagttttgcagtgcgctgtgcttcggctactcgttcttgaagggccatcacctc 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1427 cagctccagttttgcagtgcgctgtgcttcggctactcgttcttgaagggccatcacctc 1368 Query: 311 atcctcctcgcacttatacagtgtcagttgcttccccagtagatgttcgatgcgctgata 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1367 atcctcctcgcacttatacagtgtcagttgcttccccagtagatgttcgatgcgctgata 1308 Query: 371 caactcaatgtcgtactggctcacgagggttatggctttgccggagcgacctgctcttgc 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1307 caactcaatgtcgtactggctcacgagggttatggctttgccggagcgacctgctcttgc 1248 Query: 431 tgttcttcccacgcggtgaatgtagtctttgctgtgcgttggtatgtcgaaattaacgac 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1247 tgttcttcccacgcggtgaatgtagtctttgctgtgcgttggtatgtcgaaattaacgac 1188 Query: 491 gacatccacatgaggaatgtccaagccgcgggacgccacgtccgtcgaaatgagtattga 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1187 gacatccacatgaggaatgtccaagccgcgggacgccacgtccgtcgaaatgagtattga 1128 Query: 551 ccggtttttggccttgaatttgtttaaagcagctagtcgcttgttttgcgacatttgacc 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1127 ccggtttttggccttgaatttgtttaaagcagctagtcgcttgttttgcgacatttgacc 1068 Query: 611 gtgcagcggaatagcagccaatcccaacgcacgaagcattaacgctgtcttaaccgtgtt 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 gtgcagcggaatagcagccaatcccaacgcacgaagcattaacgctgtcttaaccgtgtt 1008 Query: 671 gttgcaggtgctgcaaaatatcatgaaactgttgcctgccagctcattaaggatatgaac 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 gttgcaggtgctgcaaaatatcatgaaactgttgcctgccagctcattaaggatatgaac 948 Query: 731 caaatacacatccttgtatttgacagggataaacaaatatgattgctgcagctgctcaac 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 947 caaatacacatccttgtatttgacagggataaacaaatatgattgctgcagctgctcaac 888 Query: 791 cgtctgatacttgttagacacctctacctttacgggatccttaagggaggcacgctgcag 850 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 887 cgtctgatacttgttagacacctctacctttacgggatccttaagggaggcacgctgcag 828 Query: 851 tttctttactttcttggtcatggtcgcactgaacagaaaggttcgtcgttcacgcggcaa 910 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 827 tttctttactttcttggtcatggtcgcactgaacagaaaggttcgtcgttcacgcggcaa 768 Query: 911 taccttcagaatcttgtccagctccacctcaaaatccatgttaagaatgcgatccgcctc 970 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 767 taccttcagaatcttgtccagctccacctcaaaatccatgttaagaatgcgatccgcctc 708 Query: 971 gtccatgaccaagtatttaatagccttaaggttaaaacctttcatgttttctagatgatc 1030 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 707 gtccatgaccaagtatttaatagccttaaggttaaaacctttcatgttttctagatgatc 648 Query: 1031 aaccaagcgacccggtgtggcaattataatatgcggcttcttggccagttgaagaccctg 1090 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 647 aaccaagcgacccggtgtggcaattataatatgcggcttcttggccagttgaagaccctg 588 Query: 1091 ggctaccatgtccatgccgccgactaccacgcaacactttatgccaatcccgctaccaag 1150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 587 ggctaccatgtccatgccgccgactaccacgcaacactttatgccaatcccgctaccaag 528 Query: 1151 ggcttcaaactgctcgccaatttgaaatgccagttccctcgtgggggttagcacgagggc 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 527 ggcttcaaactgctcgccaatttgaaatgccagttccctcgtgggggttagcacgagggc 468 Query: 1211 aaaataccgctgcggattctcgagaagggcgtgtaaaattggcagagcgaaggcgcccgt 1270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 467 aaaataccgctgcggattctcgagaagggcgtgtaaaattggcagagcgaaggcgcccgt 408 Query: 1271 cttgccggaaccggtctccgctaggccaattacatccttgccctgtaaggcgaccggaat 1330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 407 cttgccggaaccggtctccgctaggccaattacatccttgccctgtaaggcgaccggaat 348 Query: 1331 ggcctcacgttggatcttcgaaggcgccttccacttcaattcgtcacatgcttgacacaa 1390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 ggcctcacgttggatcttcgaaggcgccttccacttcaattcgtcacatgcttgacacaa 288 Query: 1391 agcctcattgagaccgagatctttccaggttagcttctgttcctcggctgcgtcgtcctc 1450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 agcctcattgagaccgagatctttccaggttagcttctgttcctcggctgcgtcgtcctc 228 Query: 1451 ggagcctttatcatcttcaccacttagtgccgcctcgctgtccccttccttatgattgtt 1510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 ggagcctttatcatcttcaccacttagtgccgcctcgctgtccccttccttatgattgtt 168 Query: 1511 atcttcatcttcctgctcctcctcgctacctagatcctcctcttcgtcactcgtttgtag 1570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 167 atcttcatcttcctgctcctcctcgctacctagatcctcctcttcgtcactcgtttgtag 108 Query: 1571 ctgcgtctgttcgtcctctgaagtttccgacattttgttacatgagtttcagaaaaattt 1630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107 ctgcgtctgttcgtcctctgaagtttccgacattttgttacatgagtttcagaaaaattt 48 Query: 1631 cacggtacggacattaccaatagcagcacgtggtcg 1666 |||||||||||||||||||||||||||||||||||| Sbjct: 47 cacggtacggacattaccaatagcagcacgtggtcg 12 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 41,851 Number of Sequences: 18737 Number of extensions: 41851 Number of successful extensions: 1209 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1208 Number of HSP's gapped (non-prelim): 1 length of query: 1682 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1664 effective length of database: 40,933,732 effective search space: 68113730048 effective search space used: 68113730048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089650 AY089650|AY089650 Drosophila melanogaster RH07382 full insert cDNA. (1074 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,692 Number of Sequences: 18737 Number of extensions: 25692 Number of successful extensions: 599 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 599 Number of HSP's gapped (non-prelim): 0 length of query: 1074 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1056 effective length of database: 40,933,732 effective search space: 43226020992 effective search space used: 43226020992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089662 AY089662|AY089662 Drosophila melanogaster RH25742 full insert cDNA. (892 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,299 Number of Sequences: 18737 Number of extensions: 23299 Number of successful extensions: 546 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 546 Number of HSP's gapped (non-prelim): 0 length of query: 892 length of database: 41,270,998 effective HSP length: 17 effective length of query: 875 effective length of database: 40,952,469 effective search space: 35833410375 effective search space used: 35833410375 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089663 AY089663|AY089663 Drosophila melanogaster RH26422 full insert cDNA. (635 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33254-RA feature: mRNA loc=X:complement(18799219..18799871);ID... 1053 0.0 >CG33254-RA feature: mRNA loc=X:complement(18799219..18799871);ID=FBan0033254;gene _id=FBgn0053254;gene_sym=CG33254;sym=CG33254;scaffold=AE 003511;len=653 Length = 653 Score = 1053 bits (531), Expect = 0.0 Identities = 531/531 (100%) Strand = Plus / Plus Query: 4 atagtgcaaaaagctctactcgcgttcacttcgcatccgctcgccgcattcccgtccgca 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23 atagtgcaaaaagctctactcgcgttcacttcgcatccgctcgccgcattcccgtccgca 82 Query: 64 cccggagtagtgtccagtcactcgtcactcgtcccgatttcccgcaagagagcaagcaac 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83 cccggagtagtgtccagtcactcgtcactcgtcccgatttcccgcaagagagcaagcaac 142 Query: 124 agcatgtggtcgaaaattgccatcgccggagccctgctcgtgatgggtggcgtcctgtcc 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143 agcatgtggtcgaaaattgccatcgccggagccctgctcgtgatgggtggcgtcctgtcc 202 Query: 184 tccagcgtggtggacaacttcgcctacgtggatcgctcgctgccggtggccatgcccaag 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 203 tccagcgtggtggacaacttcgcctacgtggatcgctcgctgccggtggccatgcccaag 262 Query: 244 gcaaaggccttccaagtgaaacaggagtgaggatcccaggaggagggggttttctcaagt 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 263 gcaaaggccttccaagtgaaacaggagtgaggatcccaggaggagggggttttctcaagt 322 Query: 304 ggatcccgactggctgtgtcgattaggcagttcctggagcaggaaccccgtgctcttcac 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 323 ggatcccgactggctgtgtcgattaggcagttcctggagcaggaaccccgtgctcttcac 382 Query: 364 tcggcagctgggatatctactggccagccggctactctggcttgtgtttgagctacaagt 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 383 tcggcagctgggatatctactggccagccggctactctggcttgtgtttgagctacaagt 442 Query: 424 tgaccacaagtgggaaatagttggtgcaggtcatcaagtcgatgcacccgctgggaagcc 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 443 tgaccacaagtgggaaatagttggtgcaggtcatcaagtcgatgcacccgctgggaagcc 502 Query: 484 acctccttgcccataggaacaattcgagcactaaactttaatttagatata 534 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 acctccttgcccataggaacaattcgagcactaaactttaatttagatata 553 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,664 Number of Sequences: 18737 Number of extensions: 14664 Number of successful extensions: 340 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 338 Number of HSP's gapped (non-prelim): 2 length of query: 635 length of database: 41,270,998 effective HSP length: 17 effective length of query: 618 effective length of database: 40,952,469 effective search space: 25308625842 effective search space used: 25308625842 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089669 AY089669|AY089669 Drosophila melanogaster RH40482 full insert cDNA. (3185 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11353-RB feature: mRNA loc=3L:join(4511120..4511466,4513713..4... 624 e-177 >CG11353-RB feature: mRNA loc=3L:join(4511120..4511466,4513713..4514304, 4514831..4515683,4515756..4516121,4516192..4516735, 4516808..4517222);ID=FBan0011353;gene_id=FBgn0035557;gene _sym=CG11353;sym=CG11353;scaffold=AE003481;len=3117 Length = 3117 Score = 624 bits (315), Expect = e-177 Identities = 337/348 (96%) Strand = Plus / Minus Query: 699 ccgagatgagatccgcgtgtctctgatggaatggagtctcttctgtttggattttgagtc 758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 348 ccgagatgagatccgcgtgtctctgatggaatggagtctcttctgtttggattttgagtc 289 Query: 759 cgaacttggaccgactttcgttttcgtttctttcgctggctgataaaacgcactgcacaa 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 cgaacttggaccgactttcgttttcgtttctttcgctggctgataaaacgcactgcacaa 229 Query: 819 cagattagctggctatactatatgtatgtagtgcccactctttcttcttggcctcttgcc 878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 cagattagctggctatactatatgtatgtagtgcccactctttcttcttggcctcttgcc 169 Query: 879 tctctttcgcatttaacttggcttactctggccctgcaacttgtttcggtcttttctgcc 938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 tctctttcgcatttaacttggcttactctggccctgcaacttgtttcggtcttttctgcc 109 Query: 939 ttttgtcagcttctgttgacgttaaccgaatttcgttttcattttcgcttatannnnnnn 998 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108 ttttgtcagcttctgttgacgttaaccgaatttcgttttcattttcgcttatattttttt 49 Query: 999 nnnngttttgatgagggccacgacgcgtgcaacgttttggtaacaact 1046 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 48 ttttgttttgatgagggccacgacgcgtgcaacgttttggtaacaact 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 70,318 Number of Sequences: 18737 Number of extensions: 70318 Number of successful extensions: 1716 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1714 Number of HSP's gapped (non-prelim): 2 length of query: 3185 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3166 effective length of database: 40,914,995 effective search space: 129536874170 effective search space used: 129536874170 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089684 AY089684|AY089684 Drosophila melanogaster RH61266 full insert cDNA. (1556 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,168 Number of Sequences: 18737 Number of extensions: 28168 Number of successful extensions: 616 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 616 Number of HSP's gapped (non-prelim): 0 length of query: 1556 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1538 effective length of database: 40,933,732 effective search space: 62956079816 effective search space used: 62956079816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089686 AY089686|AY089686 Drosophila melanogaster RH62702 full insert cDNA. (2049 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 46,534 Number of Sequences: 18737 Number of extensions: 46534 Number of successful extensions: 2003 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2003 Number of HSP's gapped (non-prelim): 0 length of query: 2049 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2031 effective length of database: 40,933,732 effective search space: 83136409692 effective search space used: 83136409692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089697 AY089697|AY089697 Drosophila melanogaster SD03144 full insert cDNA. (3956 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 93,248 Number of Sequences: 18737 Number of extensions: 93248 Number of successful extensions: 2250 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2250 Number of HSP's gapped (non-prelim): 0 length of query: 3956 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3937 effective length of database: 40,914,995 effective search space: 161082335315 effective search space used: 161082335315 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089698 AY089698|AY089698 Drosophila melanogaster SD04493 full insert cDNA. (4213 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value PGRP-LB-RC feature: mRNA loc=3R:complement(7278581..7279039,7279... 910 0.0 PGRP-LB-RB feature: mRNA loc=3R:complement(7278581..7279039,7279... 910 0.0 PGRP-LB-RA feature: mRNA loc=3R:complement(7278581..7279039,7279... 910 0.0 >PGRP-LB-RC feature: mRNA loc=3R:complement(7278581..7279039,7279192..7279560, 7283326..7283760);ID=FBan0014704;gene_id=FBgn0037906;gene _sym=PGRP-LB;sym=CG14704;scaffold=AE003691;len=1263 Length = 1263 Score = 910 bits (459), Expect = 0.0 Identities = 459/459 (100%) Strand = Plus / Minus Query: 293 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1263 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 1204 Query: 353 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1203 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 1144 Query: 413 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1143 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 1084 Query: 473 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1083 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 1024 Query: 533 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1023 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 964 Query: 593 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 963 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 904 Query: 653 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaaggcgatcaggt 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 903 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaaggcgatcaggt 844 Query: 713 tcttggccgcatccagcatctgcttgggcggcagttcgg 751 ||||||||||||||||||||||||||||||||||||||| Sbjct: 843 tcttggccgcatccagcatctgcttgggcggcagttcgg 805 Score = 733 bits (370), Expect = 0.0 Identities = 370/370 (100%) Strand = Plus / Minus Query: 904 ttctccaatctccgatcagcacaatgcccacgctcttgtcattgtacttgggtgcatgag 963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 804 ttctccaatctccgatcagcacaatgcccacgctcttgtcattgtacttgggtgcatgag 745 Query: 964 ctccgatgacattgaatcccctgccggtgtaaatcatgccatcgccgccgatgccaaagc 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 744 ctccgatgacattgaatcccctgccggtgtaaatcatgccatcgccgccgatgccaaagc 685 Query: 1024 tataaccaatatcgttccatccgcgctccagctgatggaagtcctgcatgtcccgcatgc 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 684 tataaccaatatcgttccatccgcgctccagctgatggaagtcctgcatgtcccgcatgc 625 Query: 1084 tcttcatgcagtccggagtggagtagcacacggccggcatgtacgagtgatggatgatga 1143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 tcttcatgcagtccggagtggagtagcacacggccggcatgtacgagtgatggatgatga 565 Query: 1144 cgtagggcgcgggaccctggaagtgctccacggacttgggcagccgggcaccccagtcgg 1203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 cgtagggcgcgggaccctggaagtgctccacggacttgggcagccgggcaccccagtcgg 505 Query: 1204 atcgggacagcaggcgggcggtggccacaccgtcgcccagattcgcctgctgcatgtgct 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 504 atcgggacagcaggcgggcggtggccacaccgtcgcccagattcgcctgctgcatgtgct 445 Query: 1264 gactatagcc 1273 |||||||||| Sbjct: 444 gactatagcc 435 >PGRP-LB-RB feature: mRNA loc=3R:complement(7278581..7279039,7279192..7279560, 7279822..7280098);ID=FBan0014704;gene_id=FBgn0037906;gene _sym=PGRP-LB;sym=CG14704;scaffold=AE003691;len=1105 Length = 1105 Score = 910 bits (459), Expect = 0.0 Identities = 459/459 (100%) Strand = Plus / Minus Query: 293 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 1046 Query: 353 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1045 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 986 Query: 413 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 985 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 926 Query: 473 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 925 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 866 Query: 533 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 865 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 806 Query: 593 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 805 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 746 Query: 653 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaaggcgatcaggt 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 745 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaaggcgatcaggt 686 Query: 713 tcttggccgcatccagcatctgcttgggcggcagttcgg 751 ||||||||||||||||||||||||||||||||||||||| Sbjct: 685 tcttggccgcatccagcatctgcttgggcggcagttcgg 647 Score = 731 bits (369), Expect = 0.0 Identities = 369/369 (100%) Strand = Plus / Minus Query: 904 ttctccaatctccgatcagcacaatgcccacgctcttgtcattgtacttgggtgcatgag 963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 ttctccaatctccgatcagcacaatgcccacgctcttgtcattgtacttgggtgcatgag 587 Query: 964 ctccgatgacattgaatcccctgccggtgtaaatcatgccatcgccgccgatgccaaagc 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 ctccgatgacattgaatcccctgccggtgtaaatcatgccatcgccgccgatgccaaagc 527 Query: 1024 tataaccaatatcgttccatccgcgctccagctgatggaagtcctgcatgtcccgcatgc 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 tataaccaatatcgttccatccgcgctccagctgatggaagtcctgcatgtcccgcatgc 467 Query: 1084 tcttcatgcagtccggagtggagtagcacacggccggcatgtacgagtgatggatgatga 1143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 tcttcatgcagtccggagtggagtagcacacggccggcatgtacgagtgatggatgatga 407 Query: 1144 cgtagggcgcgggaccctggaagtgctccacggacttgggcagccgggcaccccagtcgg 1203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 cgtagggcgcgggaccctggaagtgctccacggacttgggcagccgggcaccccagtcgg 347 Query: 1204 atcgggacagcaggcgggcggtggccacaccgtcgcccagattcgcctgctgcatgtgct 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 atcgggacagcaggcgggcggtggccacaccgtcgcccagattcgcctgctgcatgtgct 287 Query: 1264 gactatagc 1272 ||||||||| Sbjct: 286 gactatagc 278 Score = 509 bits (257), Expect = e-143 Identities = 271/278 (97%) Strand = Plus / Minus Query: 1533 ctttatatctggcccccaaaaactcttgccacttccaagacagtcagcatttgttggccc 1592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 278 ctttatatctggcccccaaaaactcttgccacttccaagacagtcagcatttgttggccc 219 Query: 1593 taattgcaaaannnnnnncgtgtgtactgcggaggggcgggaagtcgtgtggtctgcggc 1652 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 218 taattgcaaaagggggggcgtgtgtactgcggaggggcgggaagtcgtgtggtctgcggc 159 Query: 1653 tctgctaccgtgtacatcgctcacattccattgataaatgatagtcgaactgggatgcgg 1712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 158 tctgctaccgtgtacatcgctcacattccattgataaatgatagtcgaactgggatgcgg 99 Query: 1713 attcggtttccccacggagcgcagctgtctgcggatttcagcggcggcggtggctgcggt 1772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98 attcggtttccccacggagcgcagctgtctgcggatttcagcggcggcggtggctgcggt 39 Query: 1773 tccgacgacccacgattttcaactgacgctcggccggc 1810 |||||||||||||||||||||||||||||||||||||| Sbjct: 38 tccgacgacccacgattttcaactgacgctcggccggc 1 >PGRP-LB-RA feature: mRNA loc=3R:complement(7278581..7279039,7279192..7279560, 7279761..7280069);ID=FBan0014704;gene_id=FBgn0037906;gene _sym=PGRP-LB;sym=CG14704;scaffold=AE003691;len=1137 Length = 1137 Score = 910 bits (459), Expect = 0.0 Identities = 459/459 (100%) Strand = Plus / Minus Query: 293 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1137 atgtttaagtgttatcatctagaaattgctttatttgtgaaatgttagaagagacatcta 1078 Query: 353 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1077 atgaatactgaatgaactccttggcgttgtgcgtggagccgagctcgttgtggcttctct 1018 Query: 413 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1017 taaactcgtaagctttgcgaggacgatgagggccctccaatccagcctagaccttgggcg 958 Query: 473 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 957 cagctggcggggattggtgcggcttttgtggtgctgccgcctgtggatggacgtggggca 898 Query: 533 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 897 cgacgggcgccgtggtgctgctgacgccttcggtgtcgtttatgtgggtaaagtgcggcc 838 Query: 593 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 837 agctggagatctcggcgaacaggcggccgccaggacactcggtatcccgcacctgtcggt 778 Query: 653 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaaggcgatcaggt 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 777 ggcccagcagcttgtaggcagggtcaatgtagcccttgaaaacgccaaaggcgatcaggt 718 Query: 713 tcttggccgcatccagcatctgcttgggcggcagttcgg 751 ||||||||||||||||||||||||||||||||||||||| Sbjct: 717 tcttggccgcatccagcatctgcttgggcggcagttcgg 679 Score = 731 bits (369), Expect = 0.0 Identities = 369/369 (100%) Strand = Plus / Minus Query: 904 ttctccaatctccgatcagcacaatgcccacgctcttgtcattgtacttgggtgcatgag 963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 ttctccaatctccgatcagcacaatgcccacgctcttgtcattgtacttgggtgcatgag 619 Query: 964 ctccgatgacattgaatcccctgccggtgtaaatcatgccatcgccgccgatgccaaagc 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 ctccgatgacattgaatcccctgccggtgtaaatcatgccatcgccgccgatgccaaagc 559 Query: 1024 tataaccaatatcgttccatccgcgctccagctgatggaagtcctgcatgtcccgcatgc 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 tataaccaatatcgttccatccgcgctccagctgatggaagtcctgcatgtcccgcatgc 499 Query: 1084 tcttcatgcagtccggagtggagtagcacacggccggcatgtacgagtgatggatgatga 1143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 tcttcatgcagtccggagtggagtagcacacggccggcatgtacgagtgatggatgatga 439 Query: 1144 cgtagggcgcgggaccctggaagtgctccacggacttgggcagccgggcaccccagtcgg 1203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 cgtagggcgcgggaccctggaagtgctccacggacttgggcagccgggcaccccagtcgg 379 Query: 1204 atcgggacagcaggcgggcggtggccacaccgtcgcccagattcgcctgctgcatgtgct 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 atcgggacagcaggcgggcggtggccacaccgtcgcccagattcgcctgctgcatgtgct 319 Query: 1264 gactatagc 1272 ||||||||| Sbjct: 318 gactatagc 310 Score = 573 bits (289), Expect = e-162 Identities = 303/310 (97%) Strand = Plus / Minus Query: 1472 catttattttcgtgaattccttagcgtggcgcaaacaagttcaattttaacttttgccat 1531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 catttattttcgtgaattccttagcgtggcgcaaacaagttcaattttaacttttgccat 251 Query: 1532 actttatatctggcccccaaaaactcttgccacttccaagacagtcagcatttgttggcc 1591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 actttatatctggcccccaaaaactcttgccacttccaagacagtcagcatttgttggcc 191 Query: 1592 ctaattgcaaaannnnnnncgtgtgtactgcggaggggcgggaagtcgtgtggtctgcgg 1651 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 ctaattgcaaaagggggggcgtgtgtactgcggaggggcgggaagtcgtgtggtctgcgg 131 Query: 1652 ctctgctaccgtgtacatcgctcacattccattgataaatgatagtcgaactgggatgcg 1711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 ctctgctaccgtgtacatcgctcacattccattgataaatgatagtcgaactgggatgcg 71 Query: 1712 gattcggtttccccacggagcgcagctgtctgcggatttcagcggcggcggtggctgcgg 1771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 gattcggtttccccacggagcgcagctgtctgcggatttcagcggcggcggtggctgcgg 11 Query: 1772 ttccgacgac 1781 |||||||||| Sbjct: 10 ttccgacgac 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 102,082 Number of Sequences: 18737 Number of extensions: 102082 Number of successful extensions: 2661 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2651 Number of HSP's gapped (non-prelim): 8 length of query: 4213 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4194 effective length of database: 40,914,995 effective search space: 171597489030 effective search space used: 171597489030 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY089699 AY089699|AY089699 Drosophila melanogaster SD06908 full insert cDNA. (3310 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 70,356 Number of Sequences: 18737 Number of extensions: 70356 Number of successful extensions: 1749 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1749 Number of HSP's gapped (non-prelim): 0 length of query: 3310 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3291 effective length of database: 40,914,995 effective search space: 134651248545 effective search space used: 134651248545 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY094637 AY094637|AY094637 Drosophila melanogaster AT08987 full insert cDNA. (739 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32458-RA feature: mRNA loc=3L:join(22948301..22949479,22950772... 575 e-163 >CG32458-RA feature: mRNA loc=3L:join(22948301..22949479, 22950772..22951719);ID=FBan0032458;gene_id=FBgn0052458;ge ne_sym=CG32458;sym=CG32458;scaffold=AE003599;len=2127 Length = 2127 Score = 575 bits (290), Expect = e-163 Identities = 290/290 (100%) Strand = Plus / Minus Query: 415 tcactctgggctggcactgtcgacatgatatattcgcttctgctggatgtatctaaacta 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1157 tcactctgggctggcactgtcgacatgatatattcgcttctgctggatgtatctaaacta 1098 Query: 475 atgcattctgaaggagtagaagccggcctcaagctctggtgacccagctgatgctgctcg 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1097 atgcattctgaaggagtagaagccggcctcaagctctggtgacccagctgatgctgctcg 1038 Query: 535 cattcatttttagtagtctcctcgctgtaccgatttcttggttgaggacggttgcagtgc 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1037 cattcatttttagtagtctcctcgctgtaccgatttcttggttgaggacggttgcagtgc 978 Query: 595 gaaggggcaaaactttgcactgtgcaggactgatgcaatgtggaactgtcatctaattgt 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 977 gaaggggcaaaactttgcactgtgcaggactgatgcaatgtggaactgtcatctaattgt 918 Query: 655 gcctcgctttcagtaacattacttgtattgaaaacattgttatggacttt 704 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 917 gcctcgctttcagtaacattacttgtattgaaaacattgttatggacttt 868 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,865 Number of Sequences: 18737 Number of extensions: 12865 Number of successful extensions: 198 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 197 Number of HSP's gapped (non-prelim): 1 length of query: 739 length of database: 41,270,998 effective HSP length: 17 effective length of query: 722 effective length of database: 40,952,469 effective search space: 29567682618 effective search space used: 29567682618 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY094651 AY094651|AY094651 Drosophila melanogaster AT10144 full insert cDNA. (1639 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32462-RA feature: mRNA loc=3L:complement(22769672..22770790);I... 2185 0.0 >CG32462-RA feature: mRNA loc=3L:complement(22769672..22770790);ID=FBan0032462;gene _id=FBgn0052462;gene_sym=CG32462;sym=CG32462;scaffold=AE0 03599;len=1119 Length = 1119 Score = 2185 bits (1102), Expect = 0.0 Identities = 1102/1102 (100%) Strand = Plus / Minus Query: 263 attcgcaactgcattttcgggcatcaccgggcaatcgggccacgtccacgttataaagcc 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1102 attcgcaactgcattttcgggcatcaccgggcaatcgggccacgtccacgttataaagcc 1043 Query: 323 ggaactcgacatttcggcgccgcacattgagcgtgaccaccacgcagtagagtagcatct 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1042 ggaactcgacatttcggcgccgcacattgagcgtgaccaccacgcagtagagtagcatct 983 Query: 383 gcaaatgcttggccagcatcacgtagaaggcgcccatgtcgtccgggaatagggcttcgg 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 982 gcaaatgcttggccagcatcacgtagaaggcgcccatgtcgtccgggaatagggcttcgg 923 Query: 443 cccacgcggaacagtcgaacaggaagtagccaccatcgcggctggagctgtgcccgaagg 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 922 cccacgcggaacagtcgaacaggaagtagccaccatcgcggctggagctgtgcccgaagg 863 Query: 503 agaagcgacgctcctggcactccagcaggccaaactgaaagcgcgtgaagaagtagttga 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 862 agaagcgacgctcctggcactccagcaggccaaactgaaagcgcgtgaagaagtagttga 803 Query: 563 ggccctctagcgaactcatttctctactggctggggagcccgaaggccaccagctcaagt 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 802 ggccctctagcgaactcatttctctactggctggggagcccgaaggccaccagctcaagt 743 Query: 623 tgcacctggcatcgtccacacccgaatgaaggtcccaacgctcgctctgctccacgctgg 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 742 tgcacctggcatcgtccacacccgaatgaaggtcccaacgctcgctctgctccacgctgg 683 Query: 683 cgcggaagtagcggtttccattaaccacgatggcgtccagcagctttccgctccactcgc 742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 682 cgcggaagtagcggtttccattaaccacgatggcgtccagcagctttccgctccactcgc 623 Query: 743 caaggtggcggaatgtactggccacacaacaggccaccacgcagcatccgagcgtttgat 802 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 622 caaggtggcggaatgtactggccacacaacaggccaccacgcagcatccgagcgtttgat 563 Query: 803 gcccacgcaccttccggtcgaaccaaggagccctcggatgcagtccgcccgacagcgacc 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 gcccacgcaccttccggtcgaaccaaggagccctcggatgcagtccgcccgacagcgacc 503 Query: 863 agagtcgtcccgtcagctccacgtcgaagttctggctccgagcagcgacgcagttgcggc 922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 agagtcgtcccgtcagctccacgtcgaagttctggctccgagcagcgacgcagttgcggc 443 Query: 923 ccagccgctggctccagatcggcagacagttggacggcgtcagccaggtcattgactcgc 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 ccagccgctggctccagatcggcagacagttggacggcgtcagccaggtcattgactcgc 383 Query: 983 tccgcgctgacagcaaagcagtctgccccagccgccttaatatgccgccggtactggcac 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 tccgcgctgacagcaaagcagtctgccccagccgccttaatatgccgccggtactggcac 323 Query: 1043 actcctcgctgcaaattttccacagtttccacattttccaggtgccacctgtttccatcg 1102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 actcctcgctgcaaattttccacagtttccacattttccaggtgccacctgtttccatcg 263 Query: 1103 ggcaagatgtaaaacctcggcgttagcgtcggaggaccctccgaaactaggatgtctcgc 1162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 ggcaagatgtaaaacctcggcgttagcgtcggaggaccctccgaaactaggatgtctcgc 203 Query: 1163 acaaagttgtgggtgcgcatgcgccgcattatggacgataaatgcaaggcgactgtgaac 1222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 acaaagttgtgggtgcgcatgcgccgcattatggacgataaatgcaaggcgactgtgaac 143 Query: 1223 tataagggcataaagggcagcgaaataagcaggacatttcggaaggactccccagtaccc 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 tataagggcataaagggcagcgaaataagcaggacatttcggaaggactccccagtaccc 83 Query: 1283 tccttatgtcacgaaaaaatgtaaggtgttggaagtgcttaacggacgaaaattttgaac 1342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82 tccttatgtcacgaaaaaatgtaaggtgttggaagtgcttaacggacgaaaattttgaac 23 Query: 1343 tgaacttaaagacagagcctac 1364 |||||||||||||||||||||| Sbjct: 22 tgaacttaaagacagagcctac 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 35,832 Number of Sequences: 18737 Number of extensions: 35832 Number of successful extensions: 729 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 728 Number of HSP's gapped (non-prelim): 1 length of query: 1639 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1621 effective length of database: 40,933,732 effective search space: 66353579572 effective search space used: 66353579572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY094752 AY094752|AY094752 Drosophila melanogaster GM07660 full insert cDNA. (853 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,159 Number of Sequences: 18737 Number of extensions: 19159 Number of successful extensions: 583 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 583 Number of HSP's gapped (non-prelim): 0 length of query: 853 length of database: 41,270,998 effective HSP length: 17 effective length of query: 836 effective length of database: 40,952,469 effective search space: 34236264084 effective search space used: 34236264084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY094753 AY094753|AY094753 Drosophila melanogaster GM07702 full insert cDNA. (850 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 30,855 Number of Sequences: 18737 Number of extensions: 30855 Number of successful extensions: 873 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 873 Number of HSP's gapped (non-prelim): 0 length of query: 850 length of database: 41,270,998 effective HSP length: 17 effective length of query: 833 effective length of database: 40,952,469 effective search space: 34113406677 effective search space used: 34113406677 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY094765 AY094765|AY094765 Drosophila melanogaster GM09444 full insert cDNA. (653 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9444 Number of Sequences: 18737 Number of extensions: 9444 Number of successful extensions: 199 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 199 Number of HSP's gapped (non-prelim): 0 length of query: 653 length of database: 41,270,998 effective HSP length: 17 effective length of query: 636 effective length of database: 40,952,469 effective search space: 26045770284 effective search space used: 26045770284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY094774 AY094774|AY094774 Drosophila melanogaster HL03538 full insert cDNA. (676 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4658-RC feature: mRNA loc=2L:join(9949696..9949738,9949838..99... 692 0.0 CG4658-RB feature: mRNA loc=2L:join(9949696..9949738,9949812..99... 692 0.0 CG4658-RA feature: mRNA loc=2L:join(9949696..9950309,9950369..99... 692 0.0 >CG4658-RC feature: mRNA loc=2L:join(9949696..9949738,9949838..9950309, 9950369..9951294,9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2234 Length = 2234 Score = 692 bits (349), Expect = 0.0 Identities = 349/349 (100%) Strand = Plus / Minus Query: 1 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 1901 Query: 61 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1900 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 1841 Query: 121 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 1781 Query: 181 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1780 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 1721 Query: 241 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1720 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 1661 Query: 301 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 349 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1660 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 1612 >CG4658-RB feature: mRNA loc=2L:join(9949696..9949738,9949812..9950309, 9950369..9951294,9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2260 Length = 2260 Score = 692 bits (349), Expect = 0.0 Identities = 349/349 (100%) Strand = Plus / Minus Query: 1 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1986 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 1927 Query: 61 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1926 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 1867 Query: 121 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1866 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 1807 Query: 181 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1806 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 1747 Query: 241 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1746 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 1687 Query: 301 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 349 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 1638 >CG4658-RA feature: mRNA loc=2L:join(9949696..9950309,9950369..9951294, 9951349..9951520, 9951959..9952579);ID=FBan0004658;gene_id=FBgn0032170;gene _sym=CG4658;sym=CG4658;scaffold=AE003626;len=2333 Length = 2333 Score = 692 bits (349), Expect = 0.0 Identities = 349/349 (100%) Strand = Plus / Minus Query: 1 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 taaaccgaatatcaatcaacatcaattaaaaacaaattcagtccagtgattacttctcgt 2000 Query: 61 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1999 gctgcgagtgcataactatagcaaatcccagtaaatttcaatgtggcatgcccctcattt 1940 Query: 121 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1939 cgaatggcattccccatccattgcttttagaatacatatatgcgcagcagtcgcgatcaa 1880 Query: 181 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1879 ttgttgtagttctgcctgccgcccagctcgaggagatatcgatccggatggtccatccag 1820 Query: 241 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1819 tcggcggccgtgagcttcactgtccgctgccgttcggcctccttgatttgccacttcttg 1760 Query: 301 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 349 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1759 atgtccaattgcacttcgcgtgatgatttgtcgccgcagccccacacct 1711 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,069 Number of Sequences: 18737 Number of extensions: 15069 Number of successful extensions: 318 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 315 Number of HSP's gapped (non-prelim): 3 length of query: 676 length of database: 41,270,998 effective HSP length: 17 effective length of query: 659 effective length of database: 40,952,469 effective search space: 26987677071 effective search space used: 26987677071 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY094936 AY094936|AY094936 Drosophila melanogaster RH54175 full insert cDNA. (2875 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 62,544 Number of Sequences: 18737 Number of extensions: 62544 Number of successful extensions: 1448 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1448 Number of HSP's gapped (non-prelim): 0 length of query: 2875 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2856 effective length of database: 40,914,995 effective search space: 116853225720 effective search space used: 116853225720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY095098 AY095098|AY095098 Drosophila melanogaster SD05379 full insert cDNA. (1391 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,958 Number of Sequences: 18737 Number of extensions: 25958 Number of successful extensions: 559 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 559 Number of HSP's gapped (non-prelim): 0 length of query: 1391 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1373 effective length of database: 40,933,732 effective search space: 56202014036 effective search space used: 56202014036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY095172 AY095172|AY095172 Drosophila melanogaster AT11857 full insert cDNA. (2097 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 46,911 Number of Sequences: 18737 Number of extensions: 46911 Number of successful extensions: 1153 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1153 Number of HSP's gapped (non-prelim): 0 length of query: 2097 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2079 effective length of database: 40,933,732 effective search space: 85101228828 effective search space used: 85101228828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY095180 AY095180|AY095180 Drosophila melanogaster GH27201 full insert cDNA. (4554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31916-RA feature: mRNA loc=2L:join(5151029..5178535,5178585..5... 6264 0.0 Msp-300-RD feature: mRNA loc=2L:join(5144467..5144512,5144608..5... 609 e-173 Msp-300-RC feature: mRNA loc=2L:join(5110148..5110209,5114247..5... 609 e-173 Msp-300-RB feature: mRNA loc=2L:join(5113862..5113894,5114247..5... 609 e-173 Msp-300-RA feature: mRNA loc=2L:join(5138957..5139274,5139564..5... 609 e-173 >CG31916-RA feature: mRNA loc=2L:join(5151029..5178535, 5178585..5178782);ID=FBan0031916;gene_id=FBgn0051916;gene _sym=CG31916;sym=CG31916;scaffold=AE003608;len=27705 Length = 27705 Score = 6264 bits (3160), Expect = 0.0 Identities = 3169/3171 (99%), Gaps = 2/3171 (0%) Strand = Plus / Minus Query: 16 cgactgtttcttttcctttttcgaagaagtaggagaagttggttgttcttgtacttgaga 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3171 cgactgtttcttttcctttttcgaagaagtaggagaagttggttgttcttgtacttgaga 3112 Query: 76 aacatcggttgtttcaatcacagttggcgttactacctccttttcgataacaatctcagt 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3111 aacatcggttgtttcaatcacagttggcgttactacctccttttcgataacaatctcagt 3052 Query: 136 tggcttctttatcacttctggctcaacaactgtcttgttctttttcttgtccttcttcga 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3051 tggcttctttatcacttctggctcaacaactgtcttgttctttttcttgtccttcttcga 2992 Query: 196 aggcgctgccggtgttacagactttgctaactctgcgtcctcagtaacgactggttggag 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2991 aggcgctgccggtgttacagactttgctaactctgcgtcctcagtaacgactggttggag 2932 Query: 256 aaccttcttttcaactaccgtttcgaccacagatttagtttgctttacttgtgtctttgg 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2931 aaccttcttttcaactaccgtttcgaccacagatttagtttgctttacttgtgtctttgg 2872 Query: 316 aacatcagctggcttagaagtctccttttcaattaatggttcgttcctgatggtagtttc 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2871 aacatcagctggcttagaagtctccttttcaattaatggttcgttcctgatggtagtttc 2812 Query: 376 aacattcttaacaactgtcttgacttgtttcttctcttttctggttggagcaactggtga 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2811 aacattcttaacaactgtcttgacttgtttcttctcttttctggttggagcaactggtga 2752 Query: 436 aacttcaagaactggttcatctgactgaggagtttccttttccttgaccggcttgtgttt 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2751 aacttcaagaactggttcatctgactgaggagtttccttttccttgaccggcttgtgttt 2692 Query: 496 cttttctctcttcgagggaactggaactggttctactggctcaacagatggttcaacggt 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2691 cttttctctcttcgagggaactggaactggttctactggctcaacagatggttcaacggt 2632 Query: 556 tttctttatcacagatttttcgaccacagtttcctttttccctacagagggaaggaccga 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2631 tttctttatcacagatttttcgaccacagtttcctttttccctacagagggaaggaccga 2572 Query: 616 ttgcgtatctttcttagatggcacggaaatatcgacggctgattcaaccacattatcagt 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2571 ttgcgtatctttcttagatggcacggaaatatcgacggctgattcaaccacattatcagt 2512 Query: 676 agtagtcttcttagacttcttcgattttcttggctttggctcaggctttgaagtctcttc 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2511 agtagtcttcttagacttcttcgattttcttggctttggctcaggctttgaagtctcttc 2452 Query: 736 aactacaacactgggagctggggtatccacaa--actttggtttccaccgaggcaatacc 793 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2451 aactacaacactgggagctggggtatccacaacaactttggtttccaccgaggcaatacc 2392 Query: 794 atttgtatccgcagactggggctttctaaccgtcctaccgtctttcctggtactctgttt 853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2391 atttgtatccgcagactggggctttctaaccgtcctaccgtctttcctggtactctgttt 2332 Query: 854 aatcggtagtggttccggttgcgcttcgtgcctcactctcttacttcgcgagtttcgtga 913 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2331 aatcggtagtggttccggttgcgcttcgtgcctcactctcttacttcgcgagtttcgtga 2272 Query: 914 gtctacattatcattcttgtgttcccatgtcgtcgatttctcgacttgacggcctggttg 973 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2271 gtctacattatcattcttgtgttcccatgtcgtcgatttctcgacttgacggcctggttg 2212 Query: 974 ggtagtcttactggtaaaagctgtgttactgataggaccagcctgttctgtcttgcgttg 1033 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2211 ggtagtcttactggtaaaagctgtgttactgataggaccagcctgttctgtcttgcgttg 2152 Query: 1034 caaaggcggcgaggacgtgaggcgcactggggtcggttgctgactggatggctggaaaac 1093 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2151 caaaggcggcgaggacgtgaggcgcactggggtcggttgctgactggatggctggaaaac 2092 Query: 1094 tggatgttctttgtggtggagaccgaaaaggacttcggcgtaagtgctgcctgtgctaat 1153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2091 tggatgttctttgtggtggagaccgaaaaggacttcggcgtaagtgctgcctgtgctaat 2032 Query: 1154 gtcctggggccggacctgttggttgcttcgcctctgaggcttggggtgcaccacaacatt 1213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2031 gtcctggggccggacctgttggttgcttcgcctctgaggcttggggtgcaccacaacatt 1972 Query: 1214 tgtgggctcttctgtggggatctctggtgtatctggtatcgcgatgacttcctgagtctg 1273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1971 tgtgggctcttctgtggggatctctggtgtatctggtatcgcgatgacttcctgagtctg 1912 Query: 1274 ctgcattatcacagttggctgtgtctgttcggagacatttgaagtctctgttacataggt 1333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1911 ctgcattatcacagttggctgtgtctgttcggagacatttgaagtctctgttacataggt 1852 Query: 1334 ggttgtcgtaatagtttgttgagtacggacttgagactcagtagtctcgacttccgtttg 1393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1851 ggttgtcgtaatagtttgttgagtacggacttgagactcagtagtctcgacttccgtttg 1792 Query: 1394 tggagcttgtggttcatccaatggtatggtttcaatagcatcaacctcaaactgaccaaa 1453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1791 tggagcttgtggttcatccaatggtatggtttcaatagcatcaacctcaaactgaccaaa 1732 Query: 1454 tgtgatatcaggtcgcggttcgtccagctcaagttcctgtggctctactggtcgcagcat 1513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1731 tgtgatatcaggtcgcggttcgtccagctcaagttcctgtggctctactggtcgcagcat 1672 Query: 1514 ttgaacatgctcttcaatatagtacggctcgctctggacaacagtagcaagaggttcgat 1573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1671 ttgaacatgctcttcaatatagtacggctcgctctggacaacagtagcaagaggttcgat 1612 Query: 1574 ttgctgggtgctggtggtcaggggttctgcactctgttgaacgatggatgccagtgtggt 1633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1611 ttgctgggtgctggtggtcaggggttctgcactctgttgaacgatggatgccagtgtggt 1552 Query: 1634 aacaacgcgatccagcacgctgttgccggtcgtcgagggaagagtgctctccgcacgata 1693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1551 aacaacgcgatccagcacgctgttgccggtcgtcgagggaagagtgctctccgcacgata 1492 Query: 1694 tggatcaagcagatatgtctgctccactgcttcctgctggtattcaagcataggttcgac 1753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1491 tggatcaagcagatatgtctgctccactgcttcctgctggtattcaagcataggttcgac 1432 Query: 1754 ttgctgctcctgctgctgtgaaaattcctgcgagtactccgtcgcttgtggtgcatagta 1813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1431 ttgctgctcctgctgctgtgaaaattcctgcgagtactccgtcgcttgtggtgcatagta 1372 Query: 1814 gatttgatttggttctgccggataaaccgtggaataggcctccgtttgagccaccggctg 1873 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1371 gatttgatttggttctgccggataaaccgtggaataggcctccgtttgagccaccggctg 1312 Query: 1874 atagtaacctgctaaaagctgatattgcgtagtggcggctggtggtacagccacctgttg 1933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1311 atagtaacctgctaaaagctgatattgcgtagtggcggctggtggtacagccacctgttg 1252 Query: 1934 atactgtatgggatactgctgcatctgcattatctgctcgtagtagttctgtggagcctg 1993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 atactgtatgggatactgctgcatctgcattatctgctcgtagtagttctgtggagcctg 1192 Query: 1994 ctgctgctgtggatctgtcgtcgaacccgtgacaaaaccccactgaccgctatcggccac 2053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1191 ctgctgctgtggatctgtcgtcgaacccgtgacaaaaccccactgaccgctatcggccac 1132 Query: 2054 gttttcgtacattgtctgatacaactgcggatcgggctgcaagtaggtggctgcaatctc 2113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1131 gttttcgtacattgtctgatacaactgcggatcgggctgcaagtaggtggctgcaatctc 1072 Query: 2114 ttcggcagtcattgggacttcgtaattaattgggggtttctgttcctgttgctgggtagt 2173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1071 ttcggcagtcattgggacttcgtaattaattgggggtttctgttcctgttgctgggtagt 1012 Query: 2174 cgaatagtcaagtaatgtgctcgtttcggtaatatactgttccagttgtggtggctgtgg 2233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1011 cgaatagtcaagtaatgtgctcgtttcggtaatatactgttccagttgtggtggctgtgg 952 Query: 2234 ctgctgcgtttccttaatgggcggctctggatctggttggggtatgtaaatactgcctgc 2293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 951 ctgctgcgtttccttaatgggcggctctggatctggttggggtatgtaaatactgcctgc 892 Query: 2294 aacttcggcgctagcgtctacaacatcctgaatggtcagatcggaacgtccctgaactgc 2353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 891 aacttcggcgctagcgtctacaacatcctgaatggtcagatcggaacgtccctgaactgc 832 Query: 2354 ctgggcggcctgctgttcggccctgatccgctccagctctagtccccgaagaacctcagc 2413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 831 ctgggcggcctgctgttcggccctgatccgctccagctctagtccccgaagaacctcagc 772 Query: 2414 gtaggaagtcgatcctggtacccacatggggctgcgagatctagttcggtcatcagctgg 2473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 771 gtaggaagtcgatcctggtacccacatggggctgcgagatctagttcggtcatcagctgg 712 Query: 2474 caagaatagttgctcctgttcttgtggttgctggcgctccaattgaatttcgatcgaggg 2533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 711 caagaatagttgctcctgttcttgtggttgctggcgctccaattgaatttcgatcgaggg 652 Query: 2534 ttgttgagatgattccactggcttttgctgttgaggtggtcgtcgtctgggcgatcgacc 2593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 ttgttgagatgattccactggcttttgctgttgaggtggtcgtcgtctgggcgatcgacc 592 Query: 2594 acgtcgttctggccgcggcgcatgaagcttcttacccgttttcgcgtggtgatgctgatg 2653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 acgtcgttctggccgcggcgcatgaagcttcttacccgttttcgcgtggtgatgctgatg 532 Query: 2654 cctccgctcgctttcgatgaactggatattgggattggttatcgttgtcgtagctgtgtt 2713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 cctccgctcgctttcgatgaactggatattgggattggttatcgttgtcgtagctgtgtt 472 Query: 2714 aggaaccgtgtttgaggtattctcgctgggtggtgtgacctgttgggggcgcttatagtt 2773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 aggaaccgtgtttgaggtattctcgctgggtggtgtgacctgttgggggcgcttatagtt 412 Query: 2774 tgctgtggctgtggtgctgccaccgccattgagctcttgtctctcctggctttgatcatc 2833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 tgctgtggctgtggtgctgccaccgccattgagctcttgtctctcctggctttgatcatc 352 Query: 2834 atcgccgtgcgtacttctcgaagtcgttgtcgtagttgtggtagtcttaatggttgtaat 2893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 atcgccgtgcgtacttctcgaagtcgttgtcgtagttgtggtagtcttaatggttgtaat 292 Query: 2894 agtggtcgtgttctgagtatcgttcgattgttgctgccgtgttgtcgttgttgttgtcgt 2953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 agtggtcgtgttctgagtatcgttcgattgttgctgccgtgttgtcgttgttgttgtcgt 232 Query: 2954 cgtggaggggtctcgttctggtcgggaattggttaccgattcattaccgctgcttaccgg 3013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 cgtggaggggtctcgttctggtcgggaattggttaccgattcattaccgctgcttaccgg 172 Query: 3014 actcgcttgtcccgacagcacttcagcataggttagacctactgccgccgttggcttcat 3073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 actcgcttgtcccgacagcacttcagcataggttagacctactgccgccgttggcttcat 112 Query: 3074 aagcaacgagacagtcgatgaagtggtcaccactgaatggggatccagcgcataggactt 3133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111 aagcaacgagacagtcgatgaagtggtcaccactgaatggggatccagcgcataggactt 52 Query: 3134 tcgagcggtcgcatcgtagacttgctgcatgccatcgattgattcccgcat 3184 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51 tcgagcggtcgcatcgtagacttgctgcatgccatcgattgattcccgcat 1 >Msp-300-RD feature: mRNA loc=2L:join(5144467..5144512,5144608..5144926, 5146819..5147788,5147893..5148105,5148160..5148420, 5150445..5150836);ID=FBan0018251;gene_id=FBgn0010070;gene _sym=Msp-300;sym=CG18251;scaffold=AE003608;len=2201 Length = 2201 Score = 609 bits (307), Expect = e-173 Identities = 307/307 (100%) Strand = Plus / Minus Query: 3464 gataatagtaaattctaaaacacgggtcatgtttcattgattagagtaatgacggcagtt 3523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2114 gataatagtaaattctaaaacacgggtcatgtttcattgattagagtaatgacggcagtt 2055 Query: 3524 gacagttgtaccgtagccaccgttcctgggagaaggaaatcggtggcaggggcaaacgga 3583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2054 gacagttgtaccgtagccaccgttcctgggagaaggaaatcggtggcaggggcaaacgga 1995 Query: 3584 agacgccggggtggctgctttggctttgatctagtcctagattggctttatcttatggtt 3643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1994 agacgccggggtggctgctttggctttgatctagtcctagattggctttatcttatggtt 1935 Query: 3644 aaggttgtggcatcctaaatctctagcttggcatcgtccggcgtgccgcgatgtattaac 3703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1934 aaggttgtggcatcctaaatctctagcttggcatcgtccggcgtgccgcgatgtattaac 1875 Query: 3704 aacttgatgcgctcattacgtgcagttattttcgaatgcagatttttgacacgttcccgg 3763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1874 aacttgatgcgctcattacgtgcagttattttcgaatgcagatttttgacacgttcccgg 1815 Query: 3764 catgcct 3770 ||||||| Sbjct: 1814 catgcct 1808 >Msp-300-RC feature: mRNA loc=2L:join(5110148..5110209,5114247..5114519, 5115006..5115172,5115232..5115472,5115587..5118193, 5118399..5131586,5131930..5132244,5132350..5133492, 5133882..5134088,5134224..5134461,5134574..5137356, 5139564..5139869,5141302..5141453,5146819..5147788, 5147893..5148105,5148160..5148420, 5150445..5150835);ID=FBan0018251;gene_id=FBgn0010070;gene_ sym=Msp-300;sym=CG18251;scaffold=AE003608;len=23517 Length = 23517 Score = 609 bits (307), Expect = e-173 Identities = 307/307 (100%) Strand = Plus / Minus Query: 3464 gataatagtaaattctaaaacacgggtcatgtttcattgattagagtaatgacggcagtt 3523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23431 gataatagtaaattctaaaacacgggtcatgtttcattgattagagtaatgacggcagtt 23372 Query: 3524 gacagttgtaccgtagccaccgttcctgggagaaggaaatcggtggcaggggcaaacgga 3583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23371 gacagttgtaccgtagccaccgttcctgggagaaggaaatcggtggcaggggcaaacgga 23312 Query: 3584 agacgccggggtggctgctttggctttgatctagtcctagattggctttatcttatggtt 3643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23311 agacgccggggtggctgctttggctttgatctagtcctagattggctttatcttatggtt 23252 Query: 3644 aaggttgtggcatcctaaatctctagcttggcatcgtccggcgtgccgcgatgtattaac 3703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23251 aaggttgtggcatcctaaatctctagcttggcatcgtccggcgtgccgcgatgtattaac 23192 Query: 3704 aacttgatgcgctcattacgtgcagttattttcgaatgcagatttttgacacgttcccgg 3763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23191 aacttgatgcgctcattacgtgcagttattttcgaatgcagatttttgacacgttcccgg 23132 Query: 3764 catgcct 3770 ||||||| Sbjct: 23131 catgcct 23125 >Msp-300-RB feature: mRNA loc=2L:join(5113862..5113894,5114247..5114519, 5115006..5115172,5115232..5115472,5115587..5118193, 5118399..5131586,5131930..5132244,5132350..5133492, 5133882..5134088,5134224..5134461,5134574..5137356, 5139564..5139869,5141302..5141453,5146819..5147788, 5147893..5148105,5148160..5148420, 5150445..5150835);ID=FBan0018251;gene_id=FBgn0010070;gene_ sym=Msp-300;sym=CG18251;scaffold=AE003608;len=23488 Length = 23488 Score = 609 bits (307), Expect = e-173 Identities = 307/307 (100%) Strand = Plus / Minus Query: 3464 gataatagtaaattctaaaacacgggtcatgtttcattgattagagtaatgacggcagtt 3523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23402 gataatagtaaattctaaaacacgggtcatgtttcattgattagagtaatgacggcagtt 23343 Query: 3524 gacagttgtaccgtagccaccgttcctgggagaaggaaatcggtggcaggggcaaacgga 3583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23342 gacagttgtaccgtagccaccgttcctgggagaaggaaatcggtggcaggggcaaacgga 23283 Query: 3584 agacgccggggtggctgctttggctttgatctagtcctagattggctttatcttatggtt 3643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23282 agacgccggggtggctgctttggctttgatctagtcctagattggctttatcttatggtt 23223 Query: 3644 aaggttgtggcatcctaaatctctagcttggcatcgtccggcgtgccgcgatgtattaac 3703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23222 aaggttgtggcatcctaaatctctagcttggcatcgtccggcgtgccgcgatgtattaac 23163 Query: 3704 aacttgatgcgctcattacgtgcagttattttcgaatgcagatttttgacacgttcccgg 3763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23162 aacttgatgcgctcattacgtgcagttattttcgaatgcagatttttgacacgttcccgg 23103 Query: 3764 catgcct 3770 ||||||| Sbjct: 23102 catgcct 23096 >Msp-300-RA feature: mRNA loc=2L:join(5138957..5139274,5139564..5139869, 5141302..5141453,5146819..5147788,5147893..5148105, 5148160..5148420, 5150445..5150835);ID=FBan0018251;gene_id=FBgn0010070;gene _sym=Msp-300;sym=CG18251;scaffold=AE003608;len=2611 Length = 2611 Score = 609 bits (307), Expect = e-173 Identities = 307/307 (100%) Strand = Plus / Minus Query: 3464 gataatagtaaattctaaaacacgggtcatgtttcattgattagagtaatgacggcagtt 3523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2525 gataatagtaaattctaaaacacgggtcatgtttcattgattagagtaatgacggcagtt 2466 Query: 3524 gacagttgtaccgtagccaccgttcctgggagaaggaaatcggtggcaggggcaaacgga 3583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2465 gacagttgtaccgtagccaccgttcctgggagaaggaaatcggtggcaggggcaaacgga 2406 Query: 3584 agacgccggggtggctgctttggctttgatctagtcctagattggctttatcttatggtt 3643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2405 agacgccggggtggctgctttggctttgatctagtcctagattggctttatcttatggtt 2346 Query: 3644 aaggttgtggcatcctaaatctctagcttggcatcgtccggcgtgccgcgatgtattaac 3703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2345 aaggttgtggcatcctaaatctctagcttggcatcgtccggcgtgccgcgatgtattaac 2286 Query: 3704 aacttgatgcgctcattacgtgcagttattttcgaatgcagatttttgacacgttcccgg 3763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2285 aacttgatgcgctcattacgtgcagttattttcgaatgcagatttttgacacgttcccgg 2226 Query: 3764 catgcct 3770 ||||||| Sbjct: 2225 catgcct 2219 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 114,069 Number of Sequences: 18737 Number of extensions: 114069 Number of successful extensions: 3559 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3521 Number of HSP's gapped (non-prelim): 37 length of query: 4554 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4535 effective length of database: 40,914,995 effective search space: 185549502325 effective search space used: 185549502325 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY102656 AY102656|AY102656 Drosophila melanogaster GH04183 full insert cDNA. (1586 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17180-RA feature: mRNA loc=3L:join(521480..521569,521631..5220... 2042 0.0 CG12740-RD feature: mRNA loc=3L:complement(3201539..3201912,3202... 1015 0.0 CG12740-RB feature: mRNA loc=3L:complement(3201539..3201912,3202... 1015 0.0 CG12740-RA feature: mRNA loc=3L:complement(3201539..3201912,3202... 1015 0.0 CG12740-RC feature: mRNA loc=3L:complement(3201539..3202338,3202... 680 0.0 >CG17180-RA feature: mRNA loc=3L:join(521480..521569,521631..522057,522114..522588, 522646..522779);ID=FBan0017180;gene_id=FBgn0035140;gene_s ym=CG17180;sym=CG17180;scaffold=AE003468;len=1126 Length = 1126 Score = 2042 bits (1030), Expect = 0.0 Identities = 1030/1030 (100%) Strand = Plus / Minus Query: 1 cactgattatatgtatttacggaatgactagaaagacaagatctctttgattggttgatc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1119 cactgattatatgtatttacggaatgactagaaagacaagatctctttgattggttgatc 1060 Query: 61 acaggatagcgtagccctattttacatggtgctgtccaacatgtccaccagccgcttgat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1059 acaggatagcgtagccctattttacatggtgctgtccaacatgtccaccagccgcttgat 1000 Query: 121 ctgccttatgcgctgacccagctgctctgtgggtttcatcgacttggtgatttcctccgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 999 ctgccttatgcgctgacccagctgctctgtgggtttcatcgacttggtgatttcctccgc 940 Query: 181 cttggccagcaattggtactggcacttgatattcgcgtccaaagtgtccgtcagcttgtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 939 cttggccagcaattggtactggcacttgatattcgcgtccaaagtgtccgtcagcttgtt 880 Query: 241 gaccgcgttgcgatggacctccacgttgtcggccgttatggaggagattgagtgcagcag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 879 gaccgcgttgcgatggacctccacgttgtcggccgttatggaggagattgagtgcagcag 820 Query: 301 gttgcccaggttttccatcagattgtccaccgagctggccaagtactgagcctccagttc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 819 gttgcccaggttttccatcagattgtccaccgagctggccaagtactgagcctccagttc 760 Query: 361 gatgtcgctcaagacgctgccgtccacttcgggaatgttgcgcgactgcaggaaccgccg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 gatgtcgctcaagacgctgccgtccacttcgggaatgttgcgcgactgcaggaaccgccg 700 Query: 421 cgtgagcagaccgttgccggaagtggctccaatgggacccatggagctcaggggcgtggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 699 cgtgagcagaccgttgccggaagtggctccaatgggacccatggagctcaggggcgtggt 640 Query: 481 gtgctccgaggagtaggccgaagccgccacgcgctcgcgcaacttggcctctagatcgtg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 gtgctccgaggagtaggccgaagccgccacgcgctcgcgcaacttggcctctagatcgtg 580 Query: 541 ggccacaaagtggcgcatcccgtcggagtcactggtttcgccgtccagctcgtagggcac 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 ggccacaaagtggcgcatcccgtcggagtcactggtttcgccgtccagctcgtagggcac 520 Query: 601 agtgctctctgccttcagtctgtgcctttcgatgtcgccggaactgcccttagagttgct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 519 agtgctctctgccttcagtctgtgcctttcgatgtcgccggaactgcccttagagttgct 460 Query: 661 attcgagttgctgttgtcctcctcctccaagggatcgtcttcctcgtcgggatcctcgcc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 attcgagttgctgttgtcctcctcctccaagggatcgtcttcctcgtcgggatcctcgcc 400 Query: 721 cgaatccaggttaaggtatttctcgccgttgggtcttgtctttgtgcttccgggaatcgc 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 cgaatccaggttaaggtatttctcgccgttgggtcttgtctttgtgcttccgggaatcgc 340 Query: 781 agcatggccagtggctgtgggcgtcagatcctggagcacgtgctctggcaccgctcccgg 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 agcatggccagtggctgtgggcgtcagatcctggagcacgtgctctggcaccgctcccgg 280 Query: 841 atactgagccaggaacggaatttccgtgtaggaggaggcgggcgtggctccggatccaga 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 atactgagccaggaacggaatttccgtgtaggaggaggcgggcgtggctccggatccaga 220 Query: 901 actcctggctgccccttccgatgggccactctcctcggccacataaccgtaacgtgggcg 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 219 actcctggctgccccttccgatgggccactctcctcggccacataaccgtaacgtgggcg 160 Query: 961 gatgggaatgtcctggtggcggtgcgacattctgcactgctcttttcaatccaaggaact 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 159 gatgggaatgtcctggtggcggtgcgacattctgcactgctcttttcaatccaaggaact 100 Query: 1021 ttaggcagac 1030 |||||||||| Sbjct: 99 ttaggcagac 90 >CG12740-RD feature: mRNA loc=3L:complement(3201539..3201912,3202096..3202338, 3202511..3202610, 3202782..3202924);ID=FBan0012740;gene_id=FBgn0035422;gene _sym=CG12740;sym=CG12740;scaffold=AE003477;len=860 Length = 860 Score = 1015 bits (512), Expect = 0.0 Identities = 512/512 (100%) Strand = Plus / Plus Query: 1054 cgtgagatggcaacctcttcgcacctcaattggttgatcattcgcaacaacaacgccttc 1113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 cgtgagatggcaacctcttcgcacctcaattggttgatcattcgcaacaacaacgccttc 204 Query: 1114 ttgttgaagaagcgcgatgtgaagaagcccttcagcacagagccaaacaacttggccagc 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 ttgttgaagaagcgcgatgtgaagaagcccttcagcacagagccaaacaacttggccagc 264 Query: 1174 gtgagctcgtaccgctacagcggcatcgtgcacaagaagaccctgggagtcgtgccagct 1233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 gtgagctcgtaccgctacagcggcatcgtgcacaagaagaccctgggagtcgtgccagct 324 Query: 1234 gccgacaagaagggcttcaccgccgtgctgaagaagggcaagtatgcccagcgccccgcc 1293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 gccgacaagaagggcttcaccgccgtgctgaagaagggcaagtatgcccagcgccccgcc 384 Query: 1294 aagaacaccgtgcgtgttgacttcaaggccggtccccgccgttccctgaagaagctgaag 1353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 aagaacaccgtgcgtgttgacttcaaggccggtccccgccgttccctgaagaagctgaag 444 Query: 1354 aacctgcttatcggctccaagtaccgcaaggacctgacacaggctgccctccgccgcgct 1413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 aacctgcttatcggctccaagtaccgcaaggacctgacacaggctgccctccgccgcgct 504 Query: 1414 tccgctgtcctgcgctcccagaagcccgcccccgtcaagggaaagaaggccgagtttgct 1473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 tccgctgtcctgcgctcccagaagcccgcccccgtcaagggaaagaaggccgagtttgct 564 Query: 1474 aagggaaagaagcccgaataaactgtaccagattggggctatgcggagctgttttctact 1533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 aagggaaagaagcccgaataaactgtaccagattggggctatgcggagctgttttctact 624 Query: 1534 cgagaataaagaaaaaatattaaaaacaccgt 1565 |||||||||||||||||||||||||||||||| Sbjct: 625 cgagaataaagaaaaaatattaaaaacaccgt 656 >CG12740-RB feature: mRNA loc=3L:complement(3201539..3201912,3202096..3202338, 3202511..3202610, 3203417..3203587);ID=FBan0012740;gene_id=FBgn0035422;gene _sym=CG12740;sym=CG12740;scaffold=AE003477;len=888 Length = 888 Score = 1015 bits (512), Expect = 0.0 Identities = 512/512 (100%) Strand = Plus / Plus Query: 1054 cgtgagatggcaacctcttcgcacctcaattggttgatcattcgcaacaacaacgccttc 1113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 cgtgagatggcaacctcttcgcacctcaattggttgatcattcgcaacaacaacgccttc 232 Query: 1114 ttgttgaagaagcgcgatgtgaagaagcccttcagcacagagccaaacaacttggccagc 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 ttgttgaagaagcgcgatgtgaagaagcccttcagcacagagccaaacaacttggccagc 292 Query: 1174 gtgagctcgtaccgctacagcggcatcgtgcacaagaagaccctgggagtcgtgccagct 1233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 gtgagctcgtaccgctacagcggcatcgtgcacaagaagaccctgggagtcgtgccagct 352 Query: 1234 gccgacaagaagggcttcaccgccgtgctgaagaagggcaagtatgcccagcgccccgcc 1293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 353 gccgacaagaagggcttcaccgccgtgctgaagaagggcaagtatgcccagcgccccgcc 412 Query: 1294 aagaacaccgtgcgtgttgacttcaaggccggtccccgccgttccctgaagaagctgaag 1353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 413 aagaacaccgtgcgtgttgacttcaaggccggtccccgccgttccctgaagaagctgaag 472 Query: 1354 aacctgcttatcggctccaagtaccgcaaggacctgacacaggctgccctccgccgcgct 1413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473 aacctgcttatcggctccaagtaccgcaaggacctgacacaggctgccctccgccgcgct 532 Query: 1414 tccgctgtcctgcgctcccagaagcccgcccccgtcaagggaaagaaggccgagtttgct 1473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 533 tccgctgtcctgcgctcccagaagcccgcccccgtcaagggaaagaaggccgagtttgct 592 Query: 1474 aagggaaagaagcccgaataaactgtaccagattggggctatgcggagctgttttctact 1533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 593 aagggaaagaagcccgaataaactgtaccagattggggctatgcggagctgttttctact 652 Query: 1534 cgagaataaagaaaaaatattaaaaacaccgt 1565 |||||||||||||||||||||||||||||||| Sbjct: 653 cgagaataaagaaaaaatattaaaaacaccgt 684 >CG12740-RA feature: mRNA loc=3L:complement(3201539..3201912,3202096..3202338, 3202511..3202610, 3203556..3203587);ID=FBan0012740;gene_id=FBgn0035422;gene _sym=CG12740;sym=CG12740;scaffold=AE003477;len=749 Length = 749 Score = 1015 bits (512), Expect = 0.0 Identities = 512/512 (100%) Strand = Plus / Plus Query: 1054 cgtgagatggcaacctcttcgcacctcaattggttgatcattcgcaacaacaacgccttc 1113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34 cgtgagatggcaacctcttcgcacctcaattggttgatcattcgcaacaacaacgccttc 93 Query: 1114 ttgttgaagaagcgcgatgtgaagaagcccttcagcacagagccaaacaacttggccagc 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94 ttgttgaagaagcgcgatgtgaagaagcccttcagcacagagccaaacaacttggccagc 153 Query: 1174 gtgagctcgtaccgctacagcggcatcgtgcacaagaagaccctgggagtcgtgccagct 1233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 gtgagctcgtaccgctacagcggcatcgtgcacaagaagaccctgggagtcgtgccagct 213 Query: 1234 gccgacaagaagggcttcaccgccgtgctgaagaagggcaagtatgcccagcgccccgcc 1293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 gccgacaagaagggcttcaccgccgtgctgaagaagggcaagtatgcccagcgccccgcc 273 Query: 1294 aagaacaccgtgcgtgttgacttcaaggccggtccccgccgttccctgaagaagctgaag 1353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 aagaacaccgtgcgtgttgacttcaaggccggtccccgccgttccctgaagaagctgaag 333 Query: 1354 aacctgcttatcggctccaagtaccgcaaggacctgacacaggctgccctccgccgcgct 1413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 aacctgcttatcggctccaagtaccgcaaggacctgacacaggctgccctccgccgcgct 393 Query: 1414 tccgctgtcctgcgctcccagaagcccgcccccgtcaagggaaagaaggccgagtttgct 1473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 tccgctgtcctgcgctcccagaagcccgcccccgtcaagggaaagaaggccgagtttgct 453 Query: 1474 aagggaaagaagcccgaataaactgtaccagattggggctatgcggagctgttttctact 1533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 aagggaaagaagcccgaataaactgtaccagattggggctatgcggagctgttttctact 513 Query: 1534 cgagaataaagaaaaaatattaaaaacaccgt 1565 |||||||||||||||||||||||||||||||| Sbjct: 514 cgagaataaagaaaaaatattaaaaacaccgt 545 >CG12740-RC feature: mRNA loc=3L:complement(3201539..3202338,3202511..3202610, 3203417..3203587);ID=FBan0012740;gene_id=FBgn0035422;gene _sym=CG12740;sym=CG12740;scaffold=AE003477;len=1071 Length = 1071 Score = 680 bits (343), Expect = 0.0 Identities = 343/343 (100%) Strand = Plus / Plus Query: 1054 cgtgagatggcaacctcttcgcacctcaattggttgatcattcgcaacaacaacgccttc 1113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 cgtgagatggcaacctcttcgcacctcaattggttgatcattcgcaacaacaacgccttc 232 Query: 1114 ttgttgaagaagcgcgatgtgaagaagcccttcagcacagagccaaacaacttggccagc 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 ttgttgaagaagcgcgatgtgaagaagcccttcagcacagagccaaacaacttggccagc 292 Query: 1174 gtgagctcgtaccgctacagcggcatcgtgcacaagaagaccctgggagtcgtgccagct 1233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 gtgagctcgtaccgctacagcggcatcgtgcacaagaagaccctgggagtcgtgccagct 352 Query: 1234 gccgacaagaagggcttcaccgccgtgctgaagaagggcaagtatgcccagcgccccgcc 1293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 353 gccgacaagaagggcttcaccgccgtgctgaagaagggcaagtatgcccagcgccccgcc 412 Query: 1294 aagaacaccgtgcgtgttgacttcaaggccggtccccgccgttccctgaagaagctgaag 1353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 413 aagaacaccgtgcgtgttgacttcaaggccggtccccgccgttccctgaagaagctgaag 472 Query: 1354 aacctgcttatcggctccaagtaccgcaaggacctgacacagg 1396 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473 aacctgcttatcggctccaagtaccgcaaggacctgacacagg 515 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 47,973 Number of Sequences: 18737 Number of extensions: 47973 Number of successful extensions: 1195 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1189 Number of HSP's gapped (non-prelim): 6 length of query: 1586 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1568 effective length of database: 40,933,732 effective search space: 64184091776 effective search space used: 64184091776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113220 AY113220|AY113220 Drosophila melanogaster AT08427 full insert cDNA. (1808 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 34,141 Number of Sequences: 18737 Number of extensions: 34141 Number of successful extensions: 685 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 685 Number of HSP's gapped (non-prelim): 0 length of query: 1808 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1790 effective length of database: 40,933,732 effective search space: 73271380280 effective search space used: 73271380280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113232 AY113232|AY113232 Drosophila melanogaster AT11392 full insert cDNA. (994 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,109 Number of Sequences: 18737 Number of extensions: 16109 Number of successful extensions: 303 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 303 Number of HSP's gapped (non-prelim): 0 length of query: 994 length of database: 41,270,998 effective HSP length: 18 effective length of query: 976 effective length of database: 40,933,732 effective search space: 39951322432 effective search space used: 39951322432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113318 AY113318|AY113318 Drosophila melanogaster AT28206 full insert cDNA. (1027 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,158 Number of Sequences: 18737 Number of extensions: 23158 Number of successful extensions: 535 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 535 Number of HSP's gapped (non-prelim): 0 length of query: 1027 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1009 effective length of database: 40,933,732 effective search space: 41302135588 effective search space used: 41302135588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113323 AY113323|AY113323 Drosophila melanogaster AT28783 full insert cDNA. (1553 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 37,213 Number of Sequences: 18737 Number of extensions: 37213 Number of successful extensions: 835 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 835 Number of HSP's gapped (non-prelim): 0 length of query: 1553 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1535 effective length of database: 40,933,732 effective search space: 62833278620 effective search space used: 62833278620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113324 AY113324|AY113324 Drosophila melanogaster AT28829 full insert cDNA. (2624 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 157,105 Number of Sequences: 18737 Number of extensions: 157105 Number of successful extensions: 18473 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18473 Number of HSP's gapped (non-prelim): 0 length of query: 2624 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2605 effective length of database: 40,914,995 effective search space: 106583561975 effective search space used: 106583561975 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113346 AY113346|AY113346 Drosophila melanogaster GH14618 full insert cDNA. (4886 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14657-RB feature: mRNA loc=3R:complement(644019..645458,645515... 1721 0.0 >CG14657-RB feature: mRNA loc=3R:complement(644019..645458,645515..645631, 646054..647149);ID=FBan0014657;gene_id=FBgn0037282;gene_s ym=CG14657;sym=CG14657;scaffold=AE003605;len=2653 Length = 2653 Score = 1721 bits (868), Expect = 0.0 Identities = 868/868 (100%) Strand = Plus / Minus Query: 618 atttttattggcgttatgggcatgggccgaatgggcttaaagaggcacaggtccataagc 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 atttttattggcgttatgggcatgggccgaatgggcttaaagaggcacaggtccataagc 1037 Query: 678 aggctgtcggtgctgggattccgtttgcgagcggcggcagatcgatggagtgccgtggga 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 aggctgtcggtgctgggattccgtttgcgagcggcggcagatcgatggagtgccgtggga 977 Query: 738 gccacagtgtaggtgcgcagaaaggcggctgttggcacttgactgggcaaaggaatcacc 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 gccacagtgtaggtgcgcagaaaggcggctgttggcacttgactgggcaaaggaatcacc 917 Query: 798 tgtgacgaggccacctggctagtcagtgcatagtggtgacttctcgagctgccggcgata 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 tgtgacgaggccacctggctagtcagtgcatagtggtgacttctcgagctgccggcgata 857 Query: 858 gatgaggtcatgctgccaatgctgctgcagcccatcagcccgccagcgccgcttagtttt 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 856 gatgaggtcatgctgccaatgctgctgcagcccatcagcccgccagcgccgcttagtttt 797 Query: 918 cgctttaggctgtggtccacgatcttgggcgcaggagctgtagctggggccacaggcgtt 977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 796 cgctttaggctgtggtccacgatcttgggcgcaggagctgtagctggggccacaggcgtt 737 Query: 978 ggagcggacatgaccagggccttatgaacggtgtccttaatgaactcggtgcctcgatgc 1037 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 736 ggagcggacatgaccagggccttatgaacggtgtccttaatgaactcggtgcctcgatgc 677 Query: 1038 aggcgcacagacagggtcttcatcagggcactagcggcactaggacgcgacgaggacgcc 1097 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 676 aggcgcacagacagggtcttcatcagggcactagcggcactaggacgcgacgaggacgcc 617 Query: 1098 gtgggcgtacccactccgccggagcccacgttgctggatccggatccggcattgttggac 1157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 gtgggcgtacccactccgccggagcccacgttgctggatccggatccggcattgttggac 557 Query: 1158 agttttccggcgtcgtaagccggtggaccggctgcggccagcagcattacggaatcggaa 1217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 agttttccggcgtcgtaagccggtggaccggctgcggccagcagcattacggaatcggaa 497 Query: 1218 acgggatgtggccgtattactgccccgctagcctagagtccctcaacttctccggtcgga 1277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 acgggatgtggccgtattactgccccgctagcctagagtccctcaacttctccggtcgga 437 Query: 1278 tgcactgcctccagcaccgggaagaggtgatggctcatcagcgatcgcacctcacatcta 1337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 tgcactgcctccagcaccgggaagaggtgatggctcatcagcgatcgcacctcacatcta 377 Query: 1338 cgcactcttcgcggccgggtttccagccgaagtcttgagcacaaactagatttctttttg 1397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 cgcactcttcgcggccgggtttccagccgaagtcttgagcacaaactagatttctttttg 317 Query: 1398 ttttccccgtcgccacaacactcgtcgtactactactacacgcactcgcccactactaca 1457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 ttttccccgtcgccacaacactcgtcgtactactactacacgcactcgcccactactaca 257 Query: 1458 accacgctcacaagcgcccgcactctcg 1485 |||||||||||||||||||||||||||| Sbjct: 256 accacgctcacaagcgcccgcactctcg 229 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 165,456 Number of Sequences: 18737 Number of extensions: 165456 Number of successful extensions: 10108 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10105 Number of HSP's gapped (non-prelim): 3 length of query: 4886 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4867 effective length of database: 40,914,995 effective search space: 199133280665 effective search space used: 199133280665 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113347 AY113347|AY113347 Drosophila melanogaster GH16383 full insert cDNA. (1334 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 39,460 Number of Sequences: 18737 Number of extensions: 39460 Number of successful extensions: 2900 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2900 Number of HSP's gapped (non-prelim): 0 length of query: 1334 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1316 effective length of database: 40,933,732 effective search space: 53868791312 effective search space used: 53868791312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113457 AY113457|AY113457 Drosophila melanogaster RE36839 full insert cDNA. (6011 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 123,914 Number of Sequences: 18737 Number of extensions: 123914 Number of successful extensions: 2977 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2977 Number of HSP's gapped (non-prelim): 0 length of query: 6011 length of database: 41,270,998 effective HSP length: 19 effective length of query: 5992 effective length of database: 40,914,995 effective search space: 245162650040 effective search space used: 245162650040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113472 AY113472|AY113472 Drosophila melanogaster RE43210 full insert cDNA. (1248 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,394 Number of Sequences: 18737 Number of extensions: 27394 Number of successful extensions: 553 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 553 Number of HSP's gapped (non-prelim): 0 length of query: 1248 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1230 effective length of database: 40,933,732 effective search space: 50348490360 effective search space used: 50348490360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113566 AY113566|AY113566 Drosophila melanogaster RH09485 full insert cDNA. (518 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,005 Number of Sequences: 18737 Number of extensions: 10005 Number of successful extensions: 261 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 0 length of query: 518 length of database: 41,270,998 effective HSP length: 17 effective length of query: 501 effective length of database: 40,952,469 effective search space: 20517186969 effective search space used: 20517186969 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY113603 AY113603|AY113603 Drosophila melanogaster RH57193 full insert cDNA. (981 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32212-RA feature: mRNA loc=3L:join(19436833..19436844,19436904... 642 0.0 >CG32212-RA feature: mRNA loc=3L:join(19436833..19436844, 19436904..19437227);ID=FBan0032212;gene_id=FBgn0052212;g ene_sym=CG32212;sym=CG32212;scaffold=AE003516;len=336 Length = 336 Score = 642 bits (324), Expect = 0.0 Identities = 324/324 (100%) Strand = Plus / Minus Query: 44 ttagatgatgacctgcgcagcagcagaggcgcagctgattggagcggagttggccaaacg 103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 336 ttagatgatgacctgcgcagcagcagaggcgcagctgattggagcggagttggccaaacg 277 Query: 104 cgaagggtaggccaaagaagcagcagcgtacttggccaccactggagcagcaacggaagc 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 276 cgaagggtaggccaaagaagcagcagcgtacttggccaccactggagcagcaacggaagc 217 Query: 164 aatctcagaagcagcatcgattccattgttgttcctggcgatactggtggcggtcacagg 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 216 aatctcagaagcagcatcgattccattgttgttcctggcgatactggtggcggtcacagg 157 Query: 224 tggagtgggagcagttaccacggcagcgagagcagagtagtctagaggagcagagtaagc 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 156 tggagtgggagcagttaccacggcagcgagagcagagtagtctagaggagcagagtaagc 97 Query: 284 cagaggaccagtgtacgccagggcagcacccaggagatcgggcttggcagcagcgcaggc 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 cagaggaccagtgtacgccagggcagcacccaggagatcgggcttggcagcagcgcaggc 37 Query: 344 gacggttatcaggacaaggacggc 367 |||||||||||||||||||||||| Sbjct: 36 gacggttatcaggacaaggacggc 13 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,071 Number of Sequences: 18737 Number of extensions: 27071 Number of successful extensions: 708 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 706 Number of HSP's gapped (non-prelim): 2 length of query: 981 length of database: 41,270,998 effective HSP length: 18 effective length of query: 963 effective length of database: 40,933,732 effective search space: 39419183916 effective search space used: 39419183916 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118298 AY118298|AY118298 Drosophila melanogaster GH07363 full insert cDNA. (2235 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7135-RA feature: mRNA loc=X:join(17834640..17835004,17835069..... 2607 0.0 >CG7135-RA feature: mRNA loc=X:join(17834640..17835004,17835069..17835543, 17835703..17836352);ID=FBan0007135;gene_id=FBgn0030895;ge ne_sym=CG7135;sym=CG7135;scaffold=AE003507;len=1490 Length = 1490 Score = 2607 bits (1315), Expect = 0.0 Identities = 1335/1345 (99%) Strand = Plus / Minus Query: 1 ctttgcaacatgtacaaattcaacaaggcctttataatttatttgaaaatagacnnnnnn 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1345 ctttgcaacatgtacaaattcaacaaggcctttataatttatttgaaaatagacaaaaaa 1286 Query: 61 nnnntgtgtttacgaactatgtatataccgcctagtcgaacagtttcaactcgtccagac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285 aaaatgtgtttacgaactatgtatataccgcctagtcgaacagtttcaactcgtccagac 1226 Query: 121 gtttcaaggtgcacttgaggctctccagcgtgcgagtgtttccttcgaacatgagctgca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 gtttcaaggtgcacttgaggctctccagcgtgcgagtgtttccttcgaacatgagctgca 1166 Query: 181 ccttctgcctggcgaatgtctcgtcgtgaaagttcttcagtgagttgtcctcggagtcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 ccttctgcctggcgaatgtctcgtcgtgaaagttcttcagtgagttgtcctcggagtcca 1106 Query: 241 caccgatcatgctcatcagcgggaagaatccgaaagccacaaagaaaccgtaggcttcgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 caccgatcatgctcatcagcgggaagaatccgaaagccacaaagaaaccgtaggcttcgc 1046 Query: 301 gctttctgatttcatccatgatatcctcatagctgggcagctccttggaccagggcagat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1045 gctttctgatttcatccatgatatcctcatagctgggcagctccttggaccagggcagat 986 Query: 361 gcttcaggcagtccaccagggacctgtagtagatgtcgacaagctcctgccgccggtcac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 985 gcttcaggcagtccaccagggacctgtagtagatgtcgacaagctcctgccgccggtcac 926 Query: 421 gtagcacctccagttccaagctggtgttcaggaagtagttgatgtcgaagcccaggctgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 925 gtagcacctccagttccaagctggtgttcaggaagtagttgatgtcgaagcccaggctgc 866 Query: 481 cgtagaagcacagctggaagtcaataatcttcacctgctgcaccgtgtactccgcatcgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 865 cgtagaagcacagctggaagtcaataatcttcacctgctgcaccgtgtactccgcatcgt 806 Query: 541 acttgaagaatatgttgttcacccaaagatcgccgtgattgagcacgttatggttgccgc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 805 acttgaagaatatgttgttcacccaaagatcgccgtgattgagcacgttatggttgccgc 746 Query: 601 gcagtgggtacaccgccttcaggactcgttcggtgaagtgctcgtggtagcggtagagct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 745 gcagtgggtacaccgccttcaggactcgttcggtgaagtgctcgtggtagcggtagagct 686 Query: 661 ttgtggtgatcccaccgaatccctcacagtcaccgaccagagcggccagctttaggagct 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 685 ttgtggtgatcccaccgaatccctcacagtcaccgaccagagcggccagctttaggagct 626 Query: 721 gagtgccgaagagcagcttgaagggctccgaattgatggcatccatgtggagcagaccga 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 gagtgccgaagagcagcttgaagggctccgaattgatggcatccatgtggagcagaccga 566 Query: 781 agggatagcggtccacaatggtttctggctcccgttcggccatgaccatggtgagggcat 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 agggatagcggtccacaatggtttctggctcccgttcggccatgaccatggtgagggcat 506 Query: 841 ggtattcggccagtttggccatcaccagagcggcgtggtcaaagtccagacccagctggc 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 ggtattcggccagtttggccatcaccagagcggcgtggtcaaagtccagacccagctggc 446 Query: 901 ggcacttcaactgatagcctgcggcgcaaaggtcctccaggatgatcgtctgctccggct 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 ggcacttcaactgatagcctgcggcgcaaaggtcctccaggatgatcgtctgctccggct 386 Query: 961 gggtcgtggaatagtagtgcttgggagccaaagtccaagcgctgaaactatccaccgccc 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 gggtcgtggaatagtagtgcttgggagccaaagtccaagcgctgaaactatccaccgccc 326 Query: 1021 tccacatgagtgcctccagcttgggcttgatgtgcatgtagaaaagcgtctccttgttat 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 tccacatgagtgcctccagcttgggcttgatgtgcatgtagaaaagcgtctccttgttat 266 Query: 1081 aaatgtgcaggcgggccagaatggcctgcttctcgtccggcatggacttgacgatcaggg 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 aaatgtgcaggcgggccagaatggcctgcttctcgtccggcatggacttgacgatcaggg 206 Query: 1141 atgtctccattgcgcagctctcggcattgcgatacttaatctgagctcggtaaatgttgc 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 atgtctccattgcgcagctctcggcattgcgatacttaatctgagctcggtaaatgttgc 146 Query: 1201 tgcagtagttttccccgccacgcgtcagattggtcagctggacaccgatgacctgcaggt 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 tgcagtagttttccccgccacgcgtcagattggtcagctggacaccgatgacctgcaggt 86 Query: 1261 ccagctgctgcaatccgtgctccagggtgcgcctgaagaactgcggcgtaaggtacaatg 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 ccagctgctgcaatccgtgctccagggtgcgcctgaagaactgcggcgtaaggtacaatg 26 Query: 1321 gtggctcctccagtgcgtccgacat 1345 ||||||||||||||||||||||||| Sbjct: 25 gtggctcctccagtgcgtccgacat 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 57,278 Number of Sequences: 18737 Number of extensions: 57278 Number of successful extensions: 1361 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1359 Number of HSP's gapped (non-prelim): 2 length of query: 2235 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2217 effective length of database: 40,933,732 effective search space: 90750083844 effective search space used: 90750083844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118446 AY118446|AY118446 Drosophila melanogaster SD17528 full insert cDNA. (2645 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Glt-RC feature: mRNA loc=2L:join(8664274..8664397,8665356..86666... 3600 0.0 Glt-RB feature: mRNA loc=2L:join(8664978..8665014,8665230..86652... 3600 0.0 Glt-RA feature: mRNA loc=2L:join(8664978..8665014,8665356..86666... 3600 0.0 CG7808-RC feature: mRNA loc=3R:join(25676955..25677022,25677287.... 1374 0.0 CG7808-RB feature: mRNA loc=3R:join(25677280..25677393,25677873.... 1358 0.0 CG7808-RD feature: mRNA loc=3R:join(25676955..25677022,25677287.... 1039 0.0 >Glt-RC feature: mRNA loc=2L:join(8664274..8664397,8665356..8666600, 8666994..8669042);ID=FBan0009280;gene_id=FBgn0001114;gene _sym=Glt;sym=CG9280;scaffold=AE003622;len=3418 Length = 3418 Score = 3600 bits (1816), Expect = 0.0 Identities = 1822/1824 (99%) Strand = Plus / Minus Query: 35 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 1961 Query: 95 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 1901 Query: 155 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgtggccatacaccagagctag 214 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1900 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgcggccatacaccagagctag 1841 Query: 215 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 1781 Query: 275 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1780 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 1721 Query: 335 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1720 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 1661 Query: 395 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1660 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 1601 Query: 455 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 1541 Query: 515 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1540 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 1481 Query: 575 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 1421 Query: 635 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 1361 Query: 695 tgaacgcactggcgtcctttgtggccccgataatcatgggcagtgcaaggctgctgttgg 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1360 tgaacgcactggcgtcctttgtggccccgataatcatgggcagtgcaaggctgctgttgg 1301 Query: 755 tggctagtgaggctgggtggctgggtaggaagcctagagggtcgccaaccaccagtttga 814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 tggctagtgaggctgggtggctgggtaggaagcctagagggtcgccaaccaccagtttga 1241 Query: 815 agccacccagttgggtgagcccgagatgctcgttttgaagaagcagctgctcgaaggccg 874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 agccacccagttgggtgagcccgagatgctcgttttgaagaagcagctgctcgaaggccg 1181 Query: 875 ccaccagctgggaggtgggcagtcgggcgaggcaatcgtataggggcttaagtccttgtg 934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 ccaccagctgggaggtgggcagtcgggcgaggcaatcgtataggggcttaagtccttgtg 1121 Query: 935 cggatgggttaatggatggtggtgggcagcgagcaagacgggcgaaggtactcaaggtgt 994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 cggatgggttaatggatggtggtgggcagcgagcaagacgggcgaaggtactcaaggtgt 1061 Query: 995 caagtggctggttgtcaatcaggtaggggttcaaggcggtgcccgactgcaggatcagct 1054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1060 caagtggctggttgtcaatcaggtaggggttcaaggcggtgcccgactgcaggatcagct 1001 Query: 1055 gctggaagagattgccggcacgaccgctaaggctcaaggcgtgtgccaatgttgcgccac 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1000 gctggaagagattgccggcacgaccgctaaggctcaaggcgtgtgccaatgttgcgccac 941 Query: 1115 cagcctgacccactagggtcacctgtcccgcattgccaccgaagtggaccacattgcgtt 1174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 cagcctgacccactagggtcacctgtcccgcattgccaccgaagtggaccacattgcgtt 881 Query: 1175 gcagccactcaagagccaattgcagatcggaaagggcgacgtttccaggaagctcgtcgg 1234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 gcagccactcaagagccaattgcagatcggaaagggcgacgtttccaggaagctcgtcgg 821 Query: 1235 ttaatgcgcttaggaagccgaatggagccagtcggtagttgatggagaccaacagcacat 1294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 820 ttaatgcgcttaggaagccgaatggagccagtcggtagttgatggagaccaacagcacat 761 Query: 1295 ccttttccagaacatagtcaggttgggcctcctcagaaccgccatcgaacagcatttcac 1354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 ccttttccagaacatagtcaggttgggcctcctcagaaccgccatcgaacagcatttcac 701 Query: 1355 cgtgaacaaagaccaaaacgggcagctgattggcgccttcgggtgcgtagatgtccaagg 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 cgtgaacaaagaccaaaacgggcagctgattggcgccttcgggtgcgtagatgtccaagg 641 Query: 1415 taaggcaatcgtcgacgttttctccccgcgattcagataacctcaggcgatcgagctccg 1474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 taaggcaatcgtcgacgttttctccccgcgattcagataacctcaggcgatcgagctccg 581 Query: 1475 gaaactgggcacaattggggctctggacggtggcattaactcgtccctggtatccaatcg 1534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 gaaactgggcacaattggggctctggacggtggcattaactcgtccctggtatccaatcg 521 Query: 1535 gttgtgccgcctggaagcgcgccaagccacctccaaccgtgccataccgtatacccaaga 1594 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 gttgagccgcctggaagcgcgccaagccacctccaaccgtgccataccgtatacccaaga 461 Query: 1595 aagcgttcactgggcgattggcaatggttttatggccactaattcccaagatctgtccga 1654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 aagcgttcactgggcgattggcaatggttttatggccactaattcccaagatctgtccga 401 Query: 1655 cttcaggcgcttgaaccacagcttcttggggctgtgcatatcgggtctccgactgccaag 1714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 cttcaggcgcttgaaccacagcttcttggggctgtgcatatcgggtctccgactgccaag 341 Query: 1715 gaactggcttcagcggctcggggagccaatcccttctggtatcctcgtcgctatagtcgt 1774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 gaactggcttcagcggctcggggagccaatcccttctggtatcctcgtcgctatagtcgt 281 Query: 1775 tatagtcgggccgtagacccacagagtgtgcatggacttgggccccacaaagtgccaaca 1834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 280 tatagtcgggccgtagacccacagagtgtgcatggacttgggccccacaaagtgccaaca 221 Query: 1835 ctaggagcaacggcttcatgttgc 1858 |||||||||||||||||||||||| Sbjct: 220 ctaggagcaacggcttcatgttgc 197 >Glt-RB feature: mRNA loc=2L:join(8664978..8665014,8665230..8665248, 8665356..8666600, 8666994..8669042);ID=FBan0009280;gene_id=FBgn0001114;gene _sym=Glt;sym=CG9280;scaffold=AE003622;len=3350 Length = 3350 Score = 3600 bits (1816), Expect = 0.0 Identities = 1822/1824 (99%) Strand = Plus / Minus Query: 35 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1952 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 1893 Query: 95 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1892 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 1833 Query: 155 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgtggccatacaccagagctag 214 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1832 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgcggccatacaccagagctag 1773 Query: 215 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1772 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 1713 Query: 275 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1712 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 1653 Query: 335 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1652 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 1593 Query: 395 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1592 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 1533 Query: 455 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1532 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 1473 Query: 515 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1472 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 1413 Query: 575 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1412 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 1353 Query: 635 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 1293 Query: 695 tgaacgcactggcgtcctttgtggccccgataatcatgggcagtgcaaggctgctgttgg 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 tgaacgcactggcgtcctttgtggccccgataatcatgggcagtgcaaggctgctgttgg 1233 Query: 755 tggctagtgaggctgggtggctgggtaggaagcctagagggtcgccaaccaccagtttga 814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 tggctagtgaggctgggtggctgggtaggaagcctagagggtcgccaaccaccagtttga 1173 Query: 815 agccacccagttgggtgagcccgagatgctcgttttgaagaagcagctgctcgaaggccg 874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1172 agccacccagttgggtgagcccgagatgctcgttttgaagaagcagctgctcgaaggccg 1113 Query: 875 ccaccagctgggaggtgggcagtcgggcgaggcaatcgtataggggcttaagtccttgtg 934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1112 ccaccagctgggaggtgggcagtcgggcgaggcaatcgtataggggcttaagtccttgtg 1053 Query: 935 cggatgggttaatggatggtggtgggcagcgagcaagacgggcgaaggtactcaaggtgt 994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1052 cggatgggttaatggatggtggtgggcagcgagcaagacgggcgaaggtactcaaggtgt 993 Query: 995 caagtggctggttgtcaatcaggtaggggttcaaggcggtgcccgactgcaggatcagct 1054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 992 caagtggctggttgtcaatcaggtaggggttcaaggcggtgcccgactgcaggatcagct 933 Query: 1055 gctggaagagattgccggcacgaccgctaaggctcaaggcgtgtgccaatgttgcgccac 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 932 gctggaagagattgccggcacgaccgctaaggctcaaggcgtgtgccaatgttgcgccac 873 Query: 1115 cagcctgacccactagggtcacctgtcccgcattgccaccgaagtggaccacattgcgtt 1174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 872 cagcctgacccactagggtcacctgtcccgcattgccaccgaagtggaccacattgcgtt 813 Query: 1175 gcagccactcaagagccaattgcagatcggaaagggcgacgtttccaggaagctcgtcgg 1234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 812 gcagccactcaagagccaattgcagatcggaaagggcgacgtttccaggaagctcgtcgg 753 Query: 1235 ttaatgcgcttaggaagccgaatggagccagtcggtagttgatggagaccaacagcacat 1294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 752 ttaatgcgcttaggaagccgaatggagccagtcggtagttgatggagaccaacagcacat 693 Query: 1295 ccttttccagaacatagtcaggttgggcctcctcagaaccgccatcgaacagcatttcac 1354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 ccttttccagaacatagtcaggttgggcctcctcagaaccgccatcgaacagcatttcac 633 Query: 1355 cgtgaacaaagaccaaaacgggcagctgattggcgccttcgggtgcgtagatgtccaagg 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 cgtgaacaaagaccaaaacgggcagctgattggcgccttcgggtgcgtagatgtccaagg 573 Query: 1415 taaggcaatcgtcgacgttttctccccgcgattcagataacctcaggcgatcgagctccg 1474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 taaggcaatcgtcgacgttttctccccgcgattcagataacctcaggcgatcgagctccg 513 Query: 1475 gaaactgggcacaattggggctctggacggtggcattaactcgtccctggtatccaatcg 1534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 gaaactgggcacaattggggctctggacggtggcattaactcgtccctggtatccaatcg 453 Query: 1535 gttgtgccgcctggaagcgcgccaagccacctccaaccgtgccataccgtatacccaaga 1594 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 gttgagccgcctggaagcgcgccaagccacctccaaccgtgccataccgtatacccaaga 393 Query: 1595 aagcgttcactgggcgattggcaatggttttatggccactaattcccaagatctgtccga 1654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 aagcgttcactgggcgattggcaatggttttatggccactaattcccaagatctgtccga 333 Query: 1655 cttcaggcgcttgaaccacagcttcttggggctgtgcatatcgggtctccgactgccaag 1714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 cttcaggcgcttgaaccacagcttcttggggctgtgcatatcgggtctccgactgccaag 273 Query: 1715 gaactggcttcagcggctcggggagccaatcccttctggtatcctcgtcgctatagtcgt 1774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 gaactggcttcagcggctcggggagccaatcccttctggtatcctcgtcgctatagtcgt 213 Query: 1775 tatagtcgggccgtagacccacagagtgtgcatggacttgggccccacaaagtgccaaca 1834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 tatagtcgggccgtagacccacagagtgtgcatggacttgggccccacaaagtgccaaca 153 Query: 1835 ctaggagcaacggcttcatgttgc 1858 |||||||||||||||||||||||| Sbjct: 152 ctaggagcaacggcttcatgttgc 129 >Glt-RA feature: mRNA loc=2L:join(8664978..8665014,8665356..8666600, 8666994..8669041);ID=FBan0009280;gene_id=FBgn0001114;gene _sym=Glt;sym=CG9280;scaffold=AE003622;len=3330 Length = 3330 Score = 3600 bits (1816), Expect = 0.0 Identities = 1822/1824 (99%) Strand = Plus / Minus Query: 35 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1933 tggtcgtggtggtaatcggaggtgaaaagttagtcgtcggcttatagatcactctataat 1874 Query: 95 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1873 ttggcaagtaaattccctcgccaaagtgtggatctagttcaagcggactttgctgattgt 1814 Query: 155 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgtggccatacaccagagctag 214 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1813 ttgtgaagcgtaggaaggggccgtactcggaggtagcctgcggccatacaccagagctag 1754 Query: 215 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 gattgggcacgccagtagtagcaaagttcacccacattgtgaccaaggcacgagacagcg 1694 Query: 275 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 atctgtccaaggggttcaggcgactagcctcgggtggataggggaataaatacacgctgt 1634 Query: 335 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 catcgctgagcgaggcatctactccgaagggaagagggttggacaggtgtccgaaccgat 1574 Query: 395 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 ggtgctctccgcggtaatcgaaggtatacaggtaggccggcacggagcggtatgactgac 1514 Query: 455 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1513 tgatggagttaatcacgggggcacgatacaggatgtagttgctcagctcgagcagaccag 1454 Query: 515 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 gagccactgtttgcagactagccgtctgttcttggatcggagtaaagatctcgcgcagtg 1394 Query: 575 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 cccactgcttccagaggcggtgctcgctgggcggtgcggtgtgccgcaggacaacgtcga 1334 Query: 635 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 tgtagtcactcacattgcgagactgcagtcgtgcgagctgatcatagattcgcgacacga 1274 Query: 695 tgaacgcactggcgtcctttgtggccccgataatcatgggcagtgcaaggctgctgttgg 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1273 tgaacgcactggcgtcctttgtggccccgataatcatgggcagtgcaaggctgctgttgg 1214 Query: 755 tggctagtgaggctgggtggctgggtaggaagcctagagggtcgccaaccaccagtttga 814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1213 tggctagtgaggctgggtggctgggtaggaagcctagagggtcgccaaccaccagtttga 1154 Query: 815 agccacccagttgggtgagcccgagatgctcgttttgaagaagcagctgctcgaaggccg 874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 agccacccagttgggtgagcccgagatgctcgttttgaagaagcagctgctcgaaggccg 1094 Query: 875 ccaccagctgggaggtgggcagtcgggcgaggcaatcgtataggggcttaagtccttgtg 934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 ccaccagctgggaggtgggcagtcgggcgaggcaatcgtataggggcttaagtccttgtg 1034 Query: 935 cggatgggttaatggatggtggtgggcagcgagcaagacgggcgaaggtactcaaggtgt 994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1033 cggatgggttaatggatggtggtgggcagcgagcaagacgggcgaaggtactcaaggtgt 974 Query: 995 caagtggctggttgtcaatcaggtaggggttcaaggcggtgcccgactgcaggatcagct 1054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 973 caagtggctggttgtcaatcaggtaggggttcaaggcggtgcccgactgcaggatcagct 914 Query: 1055 gctggaagagattgccggcacgaccgctaaggctcaaggcgtgtgccaatgttgcgccac 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 913 gctggaagagattgccggcacgaccgctaaggctcaaggcgtgtgccaatgttgcgccac 854 Query: 1115 cagcctgacccactagggtcacctgtcccgcattgccaccgaagtggaccacattgcgtt 1174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 853 cagcctgacccactagggtcacctgtcccgcattgccaccgaagtggaccacattgcgtt 794 Query: 1175 gcagccactcaagagccaattgcagatcggaaagggcgacgtttccaggaagctcgtcgg 1234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 793 gcagccactcaagagccaattgcagatcggaaagggcgacgtttccaggaagctcgtcgg 734 Query: 1235 ttaatgcgcttaggaagccgaatggagccagtcggtagttgatggagaccaacagcacat 1294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 733 ttaatgcgcttaggaagccgaatggagccagtcggtagttgatggagaccaacagcacat 674 Query: 1295 ccttttccagaacatagtcaggttgggcctcctcagaaccgccatcgaacagcatttcac 1354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 673 ccttttccagaacatagtcaggttgggcctcctcagaaccgccatcgaacagcatttcac 614 Query: 1355 cgtgaacaaagaccaaaacgggcagctgattggcgccttcgggtgcgtagatgtccaagg 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 613 cgtgaacaaagaccaaaacgggcagctgattggcgccttcgggtgcgtagatgtccaagg 554 Query: 1415 taaggcaatcgtcgacgttttctccccgcgattcagataacctcaggcgatcgagctccg 1474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 taaggcaatcgtcgacgttttctccccgcgattcagataacctcaggcgatcgagctccg 494 Query: 1475 gaaactgggcacaattggggctctggacggtggcattaactcgtccctggtatccaatcg 1534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 gaaactgggcacaattggggctctggacggtggcattaactcgtccctggtatccaatcg 434 Query: 1535 gttgtgccgcctggaagcgcgccaagccacctccaaccgtgccataccgtatacccaaga 1594 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 gttgagccgcctggaagcgcgccaagccacctccaaccgtgccataccgtatacccaaga 374 Query: 1595 aagcgttcactgggcgattggcaatggttttatggccactaattcccaagatctgtccga 1654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 aagcgttcactgggcgattggcaatggttttatggccactaattcccaagatctgtccga 314 Query: 1655 cttcaggcgcttgaaccacagcttcttggggctgtgcatatcgggtctccgactgccaag 1714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 cttcaggcgcttgaaccacagcttcttggggctgtgcatatcgggtctccgactgccaag 254 Query: 1715 gaactggcttcagcggctcggggagccaatcccttctggtatcctcgtcgctatagtcgt 1774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 gaactggcttcagcggctcggggagccaatcccttctggtatcctcgtcgctatagtcgt 194 Query: 1775 tatagtcgggccgtagacccacagagtgtgcatggacttgggccccacaaagtgccaaca 1834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 tatagtcgggccgtagacccacagagtgtgcatggacttgggccccacaaagtgccaaca 134 Query: 1835 ctaggagcaacggcttcatgttgc 1858 |||||||||||||||||||||||| Sbjct: 133 ctaggagcaacggcttcatgttgc 110 >CG7808-RC feature: mRNA loc=3R:join(25676955..25677022,25677287..25677393, 25677873..25678284, 25678503..25678717);ID=FBan0007808;gene_id=FBgn0039713;ge ne_sym=CG7808;sym=CG7808;scaffold=AE003771;len=802 Length = 802 Score = 1374 bits (693), Expect = 0.0 Identities = 696/697 (99%) Strand = Plus / Plus Query: 1881 cgaacatgggtattagccgcgatagtgcacacaaacgccgggccaccggaggcaagcgca 1940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60 cgaacatgggtattagccgcgatagtgcacacaaacgccgggccaccggaggcaagcgca 119 Query: 1941 agtcgctccgcaagaagcgcaagttcgagttgggacgccccgccgccaacaccaagcttg 2000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 agtcgctccgcaagaagcgcaagttcgagttgggacgccccgccgccaacaccaagcttg 179 Query: 2001 gctccggccgcgtgcacaaggtgcgcacccgtggtggaaacaccaagctccgtgctctgc 2060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 gctccggccgcgtgcacaaggtgcgcacccgtggtggaaacaccaagctccgtgctctgc 239 Query: 2061 gcctggaaaccggaaacttcgcctgggcctccgagggagtggcgcgcaagacccgtatcg 2120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 gcctggaaaccggaaacttcgcctgggcctccgagggagtggcgcgcaagacccgtatcg 299 Query: 2121 ccgatgttgtgtacaacgcctccaacaacgagctggtgcgaaccaagaccttggtgaaga 2180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 ccgatgttgtgtacaacgcctccaacaacgagctggtgcgaaccaagaccttggtgaaga 359 Query: 2181 acagcatcgtggtcatcgatgccacgcccttccgccagtggtacgaggctcactacgtgc 2240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 acagcatcgtggtcatcgatgccacgcccttccgccagtggtacgaggctcactacgtgc 419 Query: 2241 tgcccctgggacgcaagcgtaaccccaagcacgcccagaaggaggacgagaacgacgtgc 2300 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 420 tgcccctgggacgcaagcgtaaccccaagcacgcccagaaagaggacgagaacgacgtgc 479 Query: 2301 tgaccaagaagcgcagcgaaaaggttatgaagaagtacctggagcgccagaagtacggca 2360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 tgaccaagaagcgcagcgaaaaggttatgaagaagtacctggagcgccagaagtacggca 539 Query: 2361 aggtcgagcaggccctcgaggatcagttcacctccggccgcatcttggcttgcatttctt 2420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 aggtcgagcaggccctcgaggatcagttcacctccggccgcatcttggcttgcatttctt 599 Query: 2421 cccgccccggacagtgcggtcgctccgacggctacattttggaaggcaaggagttggaat 2480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 cccgccccggacagtgcggtcgctccgacggctacattttggaaggcaaggagttggaat 659 Query: 2481 tctaccttaagaagatcaagtctaagaaataaaggcactagataagcttgcaagacatga 2540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 tctaccttaagaagatcaagtctaagaaataaaggcactagataagcttgcaagacatga 719 Query: 2541 tttgcaaacaaaaacggaataaaacaacttgtttttt 2577 ||||||||||||||||||||||||||||||||||||| Sbjct: 720 tttgcaaacaaaaacggaataaaacaacttgtttttt 756 >CG7808-RB feature: mRNA loc=3R:join(25677280..25677393,25677873..25678284, 25678503..25678717);ID=FBan0007808;gene_id=FBgn0039713;ge ne_sym=CG7808;sym=CG7808;scaffold=AE003771;len=741 Length = 741 Score = 1358 bits (685), Expect = 0.0 Identities = 688/689 (99%) Strand = Plus / Plus Query: 1889 ggtattagccgcgatagtgcacacaaacgccgggccaccggaggcaagcgcaagtcgctc 1948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 ggtattagccgcgatagtgcacacaaacgccgggccaccggaggcaagcgcaagtcgctc 66 Query: 1949 cgcaagaagcgcaagttcgagttgggacgccccgccgccaacaccaagcttggctccggc 2008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 cgcaagaagcgcaagttcgagttgggacgccccgccgccaacaccaagcttggctccggc 126 Query: 2009 cgcgtgcacaaggtgcgcacccgtggtggaaacaccaagctccgtgctctgcgcctggaa 2068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 cgcgtgcacaaggtgcgcacccgtggtggaaacaccaagctccgtgctctgcgcctggaa 186 Query: 2069 accggaaacttcgcctgggcctccgagggagtggcgcgcaagacccgtatcgccgatgtt 2128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 accggaaacttcgcctgggcctccgagggagtggcgcgcaagacccgtatcgccgatgtt 246 Query: 2129 gtgtacaacgcctccaacaacgagctggtgcgaaccaagaccttggtgaagaacagcatc 2188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 gtgtacaacgcctccaacaacgagctggtgcgaaccaagaccttggtgaagaacagcatc 306 Query: 2189 gtggtcatcgatgccacgcccttccgccagtggtacgaggctcactacgtgctgcccctg 2248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 gtggtcatcgatgccacgcccttccgccagtggtacgaggctcactacgtgctgcccctg 366 Query: 2249 ggacgcaagcgtaaccccaagcacgcccagaaggaggacgagaacgacgtgctgaccaag 2308 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 367 ggacgcaagcgtaaccccaagcacgcccagaaagaggacgagaacgacgtgctgaccaag 426 Query: 2309 aagcgcagcgaaaaggttatgaagaagtacctggagcgccagaagtacggcaaggtcgag 2368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 aagcgcagcgaaaaggttatgaagaagtacctggagcgccagaagtacggcaaggtcgag 486 Query: 2369 caggccctcgaggatcagttcacctccggccgcatcttggcttgcatttcttcccgcccc 2428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 caggccctcgaggatcagttcacctccggccgcatcttggcttgcatttcttcccgcccc 546 Query: 2429 ggacagtgcggtcgctccgacggctacattttggaaggcaaggagttggaattctacctt 2488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 ggacagtgcggtcgctccgacggctacattttggaaggcaaggagttggaattctacctt 606 Query: 2489 aagaagatcaagtctaagaaataaaggcactagataagcttgcaagacatgatttgcaaa 2548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 607 aagaagatcaagtctaagaaataaaggcactagataagcttgcaagacatgatttgcaaa 666 Query: 2549 caaaaacggaataaaacaacttgtttttt 2577 ||||||||||||||||||||||||||||| Sbjct: 667 caaaaacggaataaaacaacttgtttttt 695 >CG7808-RD feature: mRNA loc=3R:join(25676955..25677022,25677287..25677393, 25677873..25678301);ID=FBan0007808;gene_id=FBgn0039713;ge ne_sym=CG7808;sym=CG7808;scaffold=AE003771;len=604 Length = 604 Score = 1039 bits (524), Expect = 0.0 Identities = 527/528 (99%) Strand = Plus / Plus Query: 1881 cgaacatgggtattagccgcgatagtgcacacaaacgccgggccaccggaggcaagcgca 1940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60 cgaacatgggtattagccgcgatagtgcacacaaacgccgggccaccggaggcaagcgca 119 Query: 1941 agtcgctccgcaagaagcgcaagttcgagttgggacgccccgccgccaacaccaagcttg 2000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 agtcgctccgcaagaagcgcaagttcgagttgggacgccccgccgccaacaccaagcttg 179 Query: 2001 gctccggccgcgtgcacaaggtgcgcacccgtggtggaaacaccaagctccgtgctctgc 2060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 gctccggccgcgtgcacaaggtgcgcacccgtggtggaaacaccaagctccgtgctctgc 239 Query: 2061 gcctggaaaccggaaacttcgcctgggcctccgagggagtggcgcgcaagacccgtatcg 2120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 gcctggaaaccggaaacttcgcctgggcctccgagggagtggcgcgcaagacccgtatcg 299 Query: 2121 ccgatgttgtgtacaacgcctccaacaacgagctggtgcgaaccaagaccttggtgaaga 2180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 ccgatgttgtgtacaacgcctccaacaacgagctggtgcgaaccaagaccttggtgaaga 359 Query: 2181 acagcatcgtggtcatcgatgccacgcccttccgccagtggtacgaggctcactacgtgc 2240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 acagcatcgtggtcatcgatgccacgcccttccgccagtggtacgaggctcactacgtgc 419 Query: 2241 tgcccctgggacgcaagcgtaaccccaagcacgcccagaaggaggacgagaacgacgtgc 2300 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 420 tgcccctgggacgcaagcgtaaccccaagcacgcccagaaagaggacgagaacgacgtgc 479 Query: 2301 tgaccaagaagcgcagcgaaaaggttatgaagaagtacctggagcgccagaagtacggca 2360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 tgaccaagaagcgcagcgaaaaggttatgaagaagtacctggagcgccagaagtacggca 539 Query: 2361 aggtcgagcaggccctcgaggatcagttcacctccggccgcatcttgg 2408 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 aggtcgagcaggccctcgaggatcagttcacctccggccgcatcttgg 587 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 58,783 Number of Sequences: 18737 Number of extensions: 58783 Number of successful extensions: 1467 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1461 Number of HSP's gapped (non-prelim): 6 length of query: 2645 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2626 effective length of database: 40,914,995 effective search space: 107442776870 effective search space used: 107442776870 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118461 AY118461|AY118461 Drosophila melanogaster GM01267 full insert cDNA. (925 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mbf1-RB feature: mRNA loc=3L:join(16523654..16523855,16524066..1... 597 e-170 mbf1-RA feature: mRNA loc=3L:join(16523575..16523631,16523732..1... 597 e-170 >mbf1-RB feature: mRNA loc=3L:join(16523654..16523855,16524066..16524226, 16524596..16525360);ID=FBan0004143;gene_id=FBgn0026208;ge ne_sym=mbf1;sym=CG4143;scaffold=AE003527;len=1128 Length = 1128 Score = 597 bits (301), Expect = e-170 Identities = 301/301 (100%) Strand = Plus / Plus Query: 208 tcactacctttgccgataaattaaccattgtaattacccacaacacatacagtcacacac 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 828 tcactacctttgccgataaattaaccattgtaattacccacaacacatacagtcacacac 887 Query: 268 gagatgcacacaagtcggaaacggaagcgagacggacgtgaaacgcaaaagactaatctg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 888 gagatgcacacaagtcggaaacggaagcgagacggacgtgaaacgcaaaagactaatctg 947 Query: 328 atattaacgcgctcatagcttggagtagtgttattcgttcattttggcattagagtatgt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 948 atattaacgcgctcatagcttggagtagtgttattcgttcattttggcattagagtatgt 1007 Query: 388 tttgaaacttaatctaagttatggaattaaaaacaagacataaaaagcatgtaaaacact 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1008 tttgaaacttaatctaagttatggaattaaaaacaagacataaaaagcatgtaaaacact 1067 Query: 448 ctaatttctttctttttgtacacccaatcagccgtacacaatatttacataaacgatcca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1068 ctaatttctttctttttgtacacccaatcagccgtacacaatatttacataaacgatcca 1127 Query: 508 t 508 | Sbjct: 1128 t 1128 Score = 418 bits (211), Expect = e-116 Identities = 211/211 (100%) Strand = Plus / Plus Query: 1 cagtggtgctccacacacggtcacctcaggacgcagcgcccggcaacagaaccatcaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 cagtggtgctccacacacggtcacctcaggacgcagcgcccggcaacagaaccatcaaca 599 Query: 61 cacggattctggaggctggagcactgtaagcggcagacgcaaataaagcattatcgggag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 cacggattctggaggctggagcactgtaagcggcagacgcaaataaagcattatcgggag 659 Query: 121 gctggagaaccaaatcaaatcgggtcatacagcagcagctgccgacgcagcaaacacaga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 gctggagaaccaaatcaaatcgggtcatacagcagcagctgccgacgcagcaaacacaga 719 Query: 181 agcatacaaaaccgaagatctaactaatcac 211 ||||||||||||||||||||||||||||||| Sbjct: 720 agcatacaaaaccgaagatctaactaatcac 750 >mbf1-RA feature: mRNA loc=3L:join(16523575..16523631,16523732..16523855, 16524066..16524226, 16524596..16525360);ID=FBan0004143;gene_id=FBgn0026208;ge ne_sym=mbf1;sym=CG4143;scaffold=AE003527;len=1107 Length = 1107 Score = 597 bits (301), Expect = e-170 Identities = 301/301 (100%) Strand = Plus / Plus Query: 208 tcactacctttgccgataaattaaccattgtaattacccacaacacatacagtcacacac 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 tcactacctttgccgataaattaaccattgtaattacccacaacacatacagtcacacac 866 Query: 268 gagatgcacacaagtcggaaacggaagcgagacggacgtgaaacgcaaaagactaatctg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 gagatgcacacaagtcggaaacggaagcgagacggacgtgaaacgcaaaagactaatctg 926 Query: 328 atattaacgcgctcatagcttggagtagtgttattcgttcattttggcattagagtatgt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 atattaacgcgctcatagcttggagtagtgttattcgttcattttggcattagagtatgt 986 Query: 388 tttgaaacttaatctaagttatggaattaaaaacaagacataaaaagcatgtaaaacact 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 tttgaaacttaatctaagttatggaattaaaaacaagacataaaaagcatgtaaaacact 1046 Query: 448 ctaatttctttctttttgtacacccaatcagccgtacacaatatttacataaacgatcca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 ctaatttctttctttttgtacacccaatcagccgtacacaatatttacataaacgatcca 1106 Query: 508 t 508 | Sbjct: 1107 t 1107 Score = 418 bits (211), Expect = e-116 Identities = 211/211 (100%) Strand = Plus / Plus Query: 1 cagtggtgctccacacacggtcacctcaggacgcagcgcccggcaacagaaccatcaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 519 cagtggtgctccacacacggtcacctcaggacgcagcgcccggcaacagaaccatcaaca 578 Query: 61 cacggattctggaggctggagcactgtaagcggcagacgcaaataaagcattatcgggag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 cacggattctggaggctggagcactgtaagcggcagacgcaaataaagcattatcgggag 638 Query: 121 gctggagaaccaaatcaaatcgggtcatacagcagcagctgccgacgcagcaaacacaga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 gctggagaaccaaatcaaatcgggtcatacagcagcagctgccgacgcagcaaacacaga 698 Query: 181 agcatacaaaaccgaagatctaactaatcac 211 ||||||||||||||||||||||||||||||| Sbjct: 699 agcatacaaaaccgaagatctaactaatcac 729 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,556 Number of Sequences: 18737 Number of extensions: 24556 Number of successful extensions: 580 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 576 Number of HSP's gapped (non-prelim): 4 length of query: 925 length of database: 41,270,998 effective HSP length: 17 effective length of query: 908 effective length of database: 40,952,469 effective search space: 37184841852 effective search space used: 37184841852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118470 AY118470|AY118470 Drosophila melanogaster GM10877 full insert cDNA. (2431 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 55,030 Number of Sequences: 18737 Number of extensions: 55030 Number of successful extensions: 1296 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1296 Number of HSP's gapped (non-prelim): 0 length of query: 2431 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2413 effective length of database: 40,933,732 effective search space: 98773095316 effective search space used: 98773095316 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118482 AY118482|AY118482 Drosophila melanogaster HL01468 full insert cDNA. (1036 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,408 Number of Sequences: 18737 Number of extensions: 21408 Number of successful extensions: 579 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 579 Number of HSP's gapped (non-prelim): 0 length of query: 1036 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1018 effective length of database: 40,933,732 effective search space: 41670539176 effective search space used: 41670539176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118542 AY118542|AY118542 Drosophila melanogaster LD28384 full insert cDNA. (3654 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 92,122 Number of Sequences: 18737 Number of extensions: 92122 Number of successful extensions: 3685 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3685 Number of HSP's gapped (non-prelim): 0 length of query: 3654 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3635 effective length of database: 40,914,995 effective search space: 148726006825 effective search space used: 148726006825 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118609 AY118609|AY118609 Drosophila melanogaster LP09564 full insert cDNA. (2303 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 49,103 Number of Sequences: 18737 Number of extensions: 49103 Number of successful extensions: 1291 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1291 Number of HSP's gapped (non-prelim): 0 length of query: 2303 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2285 effective length of database: 40,933,732 effective search space: 93533577620 effective search space used: 93533577620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118619 AY118619|AY118619 Drosophila melanogaster LP11739 full insert cDNA. (1222 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,245 Number of Sequences: 18737 Number of extensions: 28245 Number of successful extensions: 703 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 703 Number of HSP's gapped (non-prelim): 0 length of query: 1222 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1204 effective length of database: 40,933,732 effective search space: 49284213328 effective search space used: 49284213328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118632 AY118632|AY118632 Drosophila melanogaster RE73965 full insert cDNA. (1680 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32015-RB feature: mRNA loc=4:join(1205161..1205222,1205888..12... 525 e-148 CG32015-RA feature: mRNA loc=4:join(1205193..1205354,1205861..12... 525 e-148 >CG32015-RB feature: mRNA loc=4:join(1205161..1205222,1205888..1206022, 1206910..1207002, 1207123..1207272);ID=FBan0032015;gene_id=FBgn0052015;gen e_sym=CG32015;sym=CG32015;scaffold=AE003846;len=440 Length = 440 Score = 525 bits (265), Expect = e-148 Identities = 279/286 (97%) Strand = Plus / Plus Query: 152 ctaagaaatcaaaaacaaatgaatatgataaccaaaatataaatatgnnnnnnngtttta 211 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 151 ctaagaaatcaaaaacaaatgaatatgataaccaaaatataaatatgaaaaaaagtttta 210 Query: 212 cgaaattcgatgatctacaaaaacgtaatgttattcatgtacgttcacgagattctaaaa 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 cgaaattcgatgatctacaaaaacgtaatgttattcatgtacgttcacgagattctaaaa 270 Query: 272 aagctcaatcactttttcgatctacaatacctgagaaggttgaaaactgccaccaatgca 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 aagctcaatcactttttcgatctacaatacctgagaaggttgaaaactgccaccaatgca 330 Query: 332 agaaacccgtgtacaaaatggaggaagtcattcttagtttgaagacagcaacgactattt 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 agaaacccgtgtacaaaatggaggaagtcattcttagtttgaagacagcaacgactattt 390 Query: 392 tccataaaacgtgcttacgttgcaaggactgtggcaaacaccttaa 437 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 tccataaaacgtgcttacgttgcaaggactgtggcaaacaccttaa 436 >CG32015-RA feature: mRNA loc=4:join(1205193..1205354,1205861..1206022, 1206910..1207002, 1207123..1207272);ID=FBan0032015;gene_id=FBgn0052015;gen e_sym=CG32015;sym=CG32015;scaffold=AE003846;len=567 Length = 567 Score = 525 bits (265), Expect = e-148 Identities = 279/286 (97%) Strand = Plus / Plus Query: 152 ctaagaaatcaaaaacaaatgaatatgataaccaaaatataaatatgnnnnnnngtttta 211 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 278 ctaagaaatcaaaaacaaatgaatatgataaccaaaatataaatatgaaaaaaagtttta 337 Query: 212 cgaaattcgatgatctacaaaaacgtaatgttattcatgtacgttcacgagattctaaaa 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 cgaaattcgatgatctacaaaaacgtaatgttattcatgtacgttcacgagattctaaaa 397 Query: 272 aagctcaatcactttttcgatctacaatacctgagaaggttgaaaactgccaccaatgca 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 aagctcaatcactttttcgatctacaatacctgagaaggttgaaaactgccaccaatgca 457 Query: 332 agaaacccgtgtacaaaatggaggaagtcattcttagtttgaagacagcaacgactattt 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 agaaacccgtgtacaaaatggaggaagtcattcttagtttgaagacagcaacgactattt 517 Query: 392 tccataaaacgtgcttacgttgcaaggactgtggcaaacaccttaa 437 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 518 tccataaaacgtgcttacgttgcaaggactgtggcaaacaccttaa 563 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 34,458 Number of Sequences: 18737 Number of extensions: 34458 Number of successful extensions: 728 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 721 Number of HSP's gapped (non-prelim): 5 length of query: 1680 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1662 effective length of database: 40,933,732 effective search space: 68031862584 effective search space used: 68031862584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118640 AY118640|AY118640 Drosophila melanogaster SD02447 full insert cDNA. (3464 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 73,650 Number of Sequences: 18737 Number of extensions: 73650 Number of successful extensions: 1649 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1649 Number of HSP's gapped (non-prelim): 0 length of query: 3464 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3445 effective length of database: 40,914,995 effective search space: 140952157775 effective search space used: 140952157775 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118701 AY118701|AY118701 Drosophila melanogaster AT20617 full insert cDNA. (1645 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11584-RB feature: mRNA loc=X:join(13911689..13911759,13911851.... 2204 0.0 >CG11584-RB feature: mRNA loc=X:join(13911689..13911759, 13911851..13913980);ID=FBan0011584;gene_id=FBgn0030541;ge ne_sym=CG11584;sym=CG11584;scaffold=AE003495;len=2201 Length = 2201 Score = 2204 bits (1112), Expect = 0.0 Identities = 1139/1148 (99%) Strand = Plus / Minus Query: 390 gctgaatcacaggtgcttgctgagccactgcctgaaccactggcgcttgctggaccactg 449 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 gctgaaccacaggtgcttgctgagccactgcctgaaccactggcgcttgctggaccactg 1159 Query: 450 gagctggataggaataggtctgctgagcaactggagctggagccggagcactgtagctct 509 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1158 gagctggataggaataggtctgctgagcaactggagcgggagccggagcactgtagctct 1099 Query: 510 gaaccacctgagcttgctcctggactgctggagctggagcggagtaagtctgctgcggtg 569 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1098 gaaccacctgagtttgctcctggactgctggagctggagcggagtaagtctgctgcggtg 1039 Query: 570 ccggagcaggggcggagtaggtctgctgaacgacaggagcaggagctggagcagagtaag 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 ccggagcaggggcggagtaggtctgctgaacgacaggagcaggagctggagcagagtaag 979 Query: 630 tctgctgaatggctggggcaggagcactatagaattgttcctgaactggagctggagcag 689 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 978 tctgctgaatggctggggcaggagcactatagaattgttcctgaactggtgctggagcag 919 Query: 690 gagcaggagcggaggaagtctgctgagccacagaagccggagcgctgtagtattgttcct 749 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 918 gagcaggagcggaggaagtctgctgaaccacagaagccggagcgctgtagtattgttcct 859 Query: 750 gggtcactggagcgggagctgaataagtcagctgctgcacggcctgcacaggagcggcag 809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 858 gggtcactggagcgggagctgaataagtcagctgctgcacggcctgcacaggagcggcag 799 Query: 810 cggtgtaggtctgttcctgtacaactggtgctggtgcggagtatgtttgctgaaccactg 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 798 cggtgtaggtctgttcctgtacaactggtgctggtgcggagtatgtttgctgaaccactg 739 Query: 870 gagcgggagccggagcggagtagctctgctggaccgcgggagcaggtgctggaacggagt 929 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 738 gagcgggagccggagcggagtagctctgctggaccgcgggagcaggagctggaacggagt 679 Query: 930 aggtctgctggatcacttggtgctgttcctgcactgcaggaactggaatggcaattggtg 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 aggtctgctggatcacttggtgctgttcctgcactgcaggaactggaatggcaattggtg 619 Query: 990 cgggtgctggaacaggagcggcagctggggcgttgtaagtggtcgtgatggtctcctgct 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 cgggtgctggaacaggagcggcagctggggcgttgtaagtggtcgtgatggtctcctgct 559 Query: 1050 gtggtgcaatgtttgcaaccactggctccggagcgggcacaaattgctggacgggagcgg 1109 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 gtggtgcaatgttcgcaaccactggctccggagcgggcacaaattgctggacgggagcgg 499 Query: 1110 gtggcagataggcgttcttcgccgccgtctgggtggcaatcactggcttgggtgcctcat 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gtggcagataggcgttcttcgccgccgtctgggtggcaatcactggcttgggtgcctcat 439 Query: 1170 agatcacctgaggagccggctgttgaacctccacgggagcaggggcgggagctggagcgg 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 agatcacctgaggagccggctgttgaacctccacgggagcaggggcgggagctggagcgg 379 Query: 1230 agtttaccactggagcaggtgctggaatggaaactggagctggagctggggctggggcac 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 agtttaccactggagcaggtgctggaatggaaactggagctggagctggggctggggcac 319 Query: 1290 tctgatattgctgctgtccactcgactggatggtgaagctagccagcggaaccgaggcct 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 tctgatattgctgctgtccactcgactggatggtgaagctagccagcggaaccgaggcct 259 Query: 1350 gaatggactccacttggggatggatctgtgactggatgtgctgctggagctgggtctgca 1409 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 258 gaatggactccacttggggatggatttgcgactggatgtgctgctggagctgggtctgca 199 Query: 1410 ccaattgctggaagctctgcgctgcggacacctccttaaccggcaaaggtggcagatact 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ccaattgctggaagctctgcgctgcggacacctccttaaccggcaaaggtggcagatact 139 Query: 1470 gggcacccgggcgtccactgaccacaaccaggctgagagcagccacaacgataaatgcaa 1529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 gggcacccgggcgtccactgaccacaaccaggctgagagcagccacaacgataaatgcaa 79 Query: 1530 agggtttc 1537 |||||||| Sbjct: 78 agggtttc 71 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 62,107 Number of Sequences: 18737 Number of extensions: 62107 Number of successful extensions: 3103 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2955 Number of HSP's gapped (non-prelim): 97 length of query: 1645 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1627 effective length of database: 40,933,732 effective search space: 66599181964 effective search space used: 66599181964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118730 AY118730|AY118730 Drosophila melanogaster GH03916 full insert cDNA. (1369 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,517 Number of Sequences: 18737 Number of extensions: 28517 Number of successful extensions: 667 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 667 Number of HSP's gapped (non-prelim): 0 length of query: 1369 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1351 effective length of database: 40,933,732 effective search space: 55301471932 effective search space used: 55301471932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118752 AY118752|AY118752 Drosophila melanogaster GH07769 full insert cDNA. (1864 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mod(mdg4)-RY feature: mRNA loc=3R:join(17182690..17183024,comple... 670 0.0 mod(mdg4)-RW feature: mRNA loc=3R:join(17184596..17184924,comple... 652 0.0 mod(mdg4)-RX feature: mRNA loc=3R:join(17183136..17183430,comple... 591 e-168 >mod(mdg4)-RY feature: mRNA loc=3R:join(17182690..17183024, complement(17191746..17192598), complement(17193288..17193427), complement(17193505..17193762), complement(17193974..17194085));ID=FBan0032491;gene_id=FB gn0002781;gene_sym=mod(mdg4);sym=CG32491;scaffold=AE00373 4;len=1698 Length = 1698 Score = 670 bits (338), Expect = 0.0 Identities = 338/338 (100%) Strand = Plus / Plus Query: 47 aagaacaggaggatgacttcaagttgcacctgcctctcctcgtgacaagaagaaagaaga 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1361 aagaacaggaggatgacttcaagttgcacctgcctctcctcgtgacaagaagaaagaaga 1420 Query: 107 cgcccggtggctcccgcaagcagagttttgaccacctggaggtgagcttcaccagaagca 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1421 cgcccggtggctcccgcaagcagagttttgaccacctggaggtgagcttcaccagaagca 1480 Query: 167 ataggggtaacaacttgctgaccatcgatgggaagcccttcaccctcaatcgtcggatca 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1481 ataggggtaacaacttgctgaccatcgatgggaagcccttcaccctcaatcgtcggatca 1540 Query: 227 aggatgtgtgctactgggagtgcgtcaagctgcgctgcaagtacatcaagtgctccgccc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1541 aggatgtgtgctactgggagtgcgtcaagctgcgctgcaagtacatcaagtgctccgccc 1600 Query: 287 gtgtggtgaccaaatccaatcggatctcggcactgagcgggctccacaaccatccctaag 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1601 gtgtggtgaccaaatccaatcggatctcggcactgagcgggctccacaaccatccctaag 1660 Query: 347 ttacgaactacctgtgccatctcattagtctaataaag 384 |||||||||||||||||||||||||||||||||||||| Sbjct: 1661 ttacgaactacctgtgccatctcattagtctaataaag 1698 >mod(mdg4)-RW feature: mRNA loc=3R:join(17184596..17184924, complement(17191746..17192598), complement(17193288..17193427), complement(17193505..17193762), complement(17193974..17194085));ID=FBan0032491;gene_id=FB gn0002781;gene_sym=mod(mdg4);sym=CG32491;scaffold=AE00373 4;len=1692 Length = 1692 Score = 652 bits (329), Expect = 0.0 Identities = 329/329 (100%) Strand = Plus / Plus Query: 1476 gacatctttcgacattgcgccatctcccagttgaggccatatttgatgcggacggcaaac 1535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1364 gacatctttcgacattgcgccatctcccagttgaggccatatttgatgcggacggcaaac 1423 Query: 1536 agatggacttcatacccaacattcgcgtcatccgaagtcagcggaagaccataaagctga 1595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1424 agatggacttcatacccaacattcgcgtcatccgaagtcagcggaagaccataaagctga 1483 Query: 1596 tgtttaaaaaatatgcctactcgaagaccaacgagcacgataccacaacctactggcact 1655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1484 tgtttaaaaaatatgcctactcgaagaccaacgagcacgataccacaacctactggcact 1543 Query: 1656 gccgaagtcgtcgcaatggaaggcctgcgtgcaaggcccggttttccaccaagaagctca 1715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1544 gccgaagtcgtcgcaatggaaggcctgcgtgcaaggcccggttttccaccaagaagctca 1603 Query: 1716 agaacggtagctacaaagtatatctgacccagccggagcacaatcatcccccaaagaagc 1775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1604 agaacggtagctacaaagtatatctgacccagccggagcacaatcatcccccaaagaagc 1663 Query: 1776 gtcgcctataatcagaataactatatttt 1804 ||||||||||||||||||||||||||||| Sbjct: 1664 gtcgcctataatcagaataactatatttt 1692 >mod(mdg4)-RX feature: mRNA loc=3R:join(17183136..17183430, complement(17191746..17192598), complement(17193288..17193427), complement(17193505..17193762), complement(17193974..17194085));ID=FBan0032491;gene_id=FB gn0002781;gene_sym=mod(mdg4);sym=CG32491;scaffold=AE00373 4;len=1658 Length = 1658 Score = 591 bits (298), Expect = e-168 Identities = 298/298 (100%) Strand = Plus / Plus Query: 382 aagcatgctaccaactggtgcccaatcgccgcggtgggaagaacctcatcttccaggggc 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1361 aagcatgctaccaactggtgcccaatcgccgcggtgggaagaacctcatcttccaggggc 1420 Query: 442 acatgtactccgtggagcgcaagtaccgaaacagcatcaactgggtatgttccaagaaca 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1421 acatgtactccgtggagcgcaagtaccgaaacagcatcaactgggtatgttccaagaaca 1480 Query: 502 gcaacagcgtgcttcgctgcccggcgaggtgcgtcacaaatccggagagtggcaatggca 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1481 gcaacagcgtgcttcgctgcccggcgaggtgcgtcacaaatccggagagtggcaatggca 1540 Query: 562 tcaagctgagccaccgacgccacaatcatccggcggatgcctttaagccccacaagcgct 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1541 tcaagctgagccaccgacgccacaatcatccggcggatgcctttaagccccacaagcgct 1600 Query: 622 gtcgaaagcgtcccggcgatcgaaagtaacaagtaaccatgtttcaggatgcaaagca 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1601 gtcgaaagcgtcccggcgatcgaaagtaacaagtaaccatgtttcaggatgcaaagca 1658 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 38,249 Number of Sequences: 18737 Number of extensions: 38249 Number of successful extensions: 691 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 688 Number of HSP's gapped (non-prelim): 3 length of query: 1864 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1846 effective length of database: 40,933,732 effective search space: 75563669272 effective search space used: 75563669272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118841 AY118841|AY118841 Drosophila melanogaster GM12657 full insert cDNA. (708 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,371 Number of Sequences: 18737 Number of extensions: 17371 Number of successful extensions: 548 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 548 Number of HSP's gapped (non-prelim): 0 length of query: 708 length of database: 41,270,998 effective HSP length: 17 effective length of query: 691 effective length of database: 40,952,469 effective search space: 28298156079 effective search space used: 28298156079 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118848 AY118848|AY118848 Drosophila melanogaster GM15484 full insert cDNA. (964 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value sta-RB feature: mRNA loc=X:complement(1239228..1239917,1240110..... 1782 0.0 sta-RD feature: mRNA loc=X:complement(1239225..1239917,1240110..... 1729 0.0 sta-RA feature: mRNA loc=X:complement(1239228..1239917,1240110..... 1729 0.0 >sta-RB feature: mRNA loc=X:complement(1239228..1239917,1240110..1240352, 1240695..1240850);ID=FBan0014792;gene_id=FBgn0003517;gene _sym=sta;sym=CG14792;scaffold=AE003421;len=1089 Length = 1089 Score = 1782 bits (899), Expect = 0.0 Identities = 902/903 (99%) Strand = Plus / Minus Query: 1 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 973 Query: 61 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 972 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 913 Query: 121 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 912 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 853 Query: 181 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 852 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 793 Query: 241 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 733 Query: 301 gcggagcacctcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 732 gcggagcacttcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 673 Query: 361 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 672 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 613 Query: 421 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 612 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 553 Query: 481 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 552 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 493 Query: 541 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 433 Query: 601 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 373 Query: 661 ggcgcgggccgccagctgcagcttctcccaggtcttgcccaggttgaggatgttgacgcc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 ggcgcgggccgccagctgcagcttctcccaggtcttgcccaggttgaggatgttgacgcc 313 Query: 721 atcagcgcggcgcttgtacacgtactgctccatctggaagttgacgttctcggaacccag 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 atcagcgcggcgcttgtacacgtactgctccatctggaagttgacgttctcggaacccag 253 Query: 781 atgggtggtggccaccaacatcttggtgatgtcgtcctccttgagggacagaatatctaa 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 atgggtggtggccaccaacatcttggtgatgtcgtcctccttgagggacagaatatctaa 193 Query: 841 gcctcccgacatgttaacgtggaaagagttacggacgtctagatgccgctgggagttttg 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 gcctcccgacatgttaacgtggaaagagttacggacgtctagatgccgctgggagttttg 133 Query: 901 aca 903 ||| Sbjct: 132 aca 130 >sta-RD feature: mRNA loc=X:complement(1239225..1239917, 1240110..1240457);ID=FBan0014792;gene_id=FBgn0003517;gen e_sym=sta;sym=CG14792;scaffold=AE003421;len=1041 Length = 1041 Score = 1729 bits (872), Expect = 0.0 Identities = 875/876 (99%) Strand = Plus / Minus Query: 1 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 981 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 922 Query: 61 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 921 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 862 Query: 121 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 861 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 802 Query: 181 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 801 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 742 Query: 241 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 682 Query: 301 gcggagcacctcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 gcggagcacttcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 622 Query: 361 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 562 Query: 421 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 502 Query: 481 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 442 Query: 541 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 441 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 382 Query: 601 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 322 Query: 661 ggcgcgggccgccagctgcagcttctcccaggtcttgcccaggttgaggatgttgacgcc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 ggcgcgggccgccagctgcagcttctcccaggtcttgcccaggttgaggatgttgacgcc 262 Query: 721 atcagcgcggcgcttgtacacgtactgctccatctggaagttgacgttctcggaacccag 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 atcagcgcggcgcttgtacacgtactgctccatctggaagttgacgttctcggaacccag 202 Query: 781 atgggtggtggccaccaacatcttggtgatgtcgtcctccttgagggacagaatatctaa 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 atgggtggtggccaccaacatcttggtgatgtcgtcctccttgagggacagaatatctaa 142 Query: 841 gcctcccgacatgttaacgtggaaagagttacggac 876 |||||||||||||||||||||||||||||||||||| Sbjct: 141 gcctcccgacatgttaacgtggaaagagttacggac 106 >sta-RA feature: mRNA loc=X:complement(1239228..1239917,1240110..1240352, 1240548..1240850);ID=FBan0014792;gene_id=FBgn0003517;gene _sym=sta;sym=CG14792;scaffold=AE003421;len=1236 Length = 1236 Score = 1729 bits (872), Expect = 0.0 Identities = 875/876 (99%) Strand = Plus / Minus Query: 1 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1179 ctgtgctgatgtagtgccatctgtggcccggacgattccttagaactggccgtcgctacc 1120 Query: 61 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1119 ccaggaggtcttgacggtgtcctcgttccagtcctccactccgccaacggtctcggcggc 1060 Query: 121 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1059 aacctcatcggcccagttggtggtctcctcgaccgggtggtcgacggcctcctcaatctt 1000 Query: 181 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 999 gggtggcggcaacagctccttggcggcggcctcctccttctcggcctcctcgggatcgcg 940 Query: 241 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 939 gtagaagaacagatcgacgactacgggccactcgacgctgcgagagatggtgccacgcag 880 Query: 301 gcggagcacctcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 879 gcggagcacttcgcgggccaacagccaccacatcagaccgatagagtgggccgacttgtt 820 Query: 361 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 819 gttgcacggaatggcaatgtcgatgtagcgcagaggcgagtcggtgttcgtgaaggcaat 760 Query: 421 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 cacggggatgttcacgtagctggcctccatgatgggctggtgatcggtgttggggtcggt 700 Query: 481 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 699 caccaccagcagacgcggctcgcggaaagcgggctggatctggttggtgaaggcaccggg 640 Query: 541 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 cgtgaagcggccggcgatcggagtggtgtcggtgtacttggcgaacttcagcaccgcgcg 580 Query: 601 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 ctggccgatcggacgcgacgagatgacgaagatgtccgaggggttatcgatggccacgat 520 Query: 661 ggcgcgggccgccagctgcagcttctcccaggtcttgcccaggttgaggatgttgacgcc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 519 ggcgcgggccgccagctgcagcttctcccaggtcttgcccaggttgaggatgttgacgcc 460 Query: 721 atcagcgcggcgcttgtacacgtactgctccatctggaagttgacgttctcggaacccag 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 atcagcgcggcgcttgtacacgtactgctccatctggaagttgacgttctcggaacccag 400 Query: 781 atgggtggtggccaccaacatcttggtgatgtcgtcctccttgagggacagaatatctaa 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 atgggtggtggccaccaacatcttggtgatgtcgtcctccttgagggacagaatatctaa 340 Query: 841 gcctcccgacatgttaacgtggaaagagttacggac 876 |||||||||||||||||||||||||||||||||||| Sbjct: 339 gcctcccgacatgttaacgtggaaagagttacggac 304 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,130 Number of Sequences: 18737 Number of extensions: 28130 Number of successful extensions: 840 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 830 Number of HSP's gapped (non-prelim): 10 length of query: 964 length of database: 41,270,998 effective HSP length: 18 effective length of query: 946 effective length of database: 40,933,732 effective search space: 38723310472 effective search space used: 38723310472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118864 AY118864|AY118864 Drosophila melanogaster GM24362 full insert cDNA. (450 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7253 Number of Sequences: 18737 Number of extensions: 7253 Number of successful extensions: 484 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 484 Number of HSP's gapped (non-prelim): 0 length of query: 450 length of database: 41,270,998 effective HSP length: 17 effective length of query: 433 effective length of database: 40,952,469 effective search space: 17732419077 effective search space used: 17732419077 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118877 AY118877|AY118877 Drosophila melanogaster GM31840 full insert cDNA. (368 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33237-RA feature: mRNA loc=X:complement(13790215..13790719,137... 476 e-134 CG33247-RA feature: mRNA loc=X:complement(13777552..13778056,137... 474 e-133 CG33239-RA feature: mRNA loc=X:complement(13787675..13788179,137... 468 e-131 CG33246-RA feature: mRNA loc=X:complement(13778791..13779295,137... 468 e-131 CG33242-RA feature: mRNA loc=X:complement(13783866..13784368,137... 468 e-131 CG33241-RA feature: mRNA loc=X:complement(13785137..13785641,137... 468 e-131 Ste12DOR-RA feature: mRNA loc=X:join(13730869..13730879,13730937... 460 e-129 CG33236-RA feature: mRNA loc=X:complement(13791465..13791987,137... 460 e-129 CG33245-RA feature: mRNA loc=X:complement(13779948..13780564,137... 460 e-129 CG33244-RA feature: mRNA loc=X:complement(13781311..13781833,137... 460 e-129 CG33240-RA feature: mRNA loc=X:complement(13786406..13786910,137... 452 e-127 CG33238-RA feature: mRNA loc=X:complement(13788944..13789448,137... 452 e-127 CG33243-RA feature: mRNA loc=X:complement(13782598..13783102,137... 444 e-124 >CG33237-RA feature: mRNA loc=X:complement(13790215..13790719, 13790777..13790787);ID=FBan0033237;gene_id=FBgn0053237;g ene_sym=CG33237;sym=CG33237;scaffold=AE003494;len=516 Length = 516 Score = 476 bits (240), Expect = e-134 Identities = 264/272 (97%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33247-RA feature: mRNA loc=X:complement(13777552..13778056, 13778114..13778124);ID=FBan0033247;gene_id=FBgn0053247;g ene_sym=CG33247;sym=CG33247;scaffold=AE003494;len=516 Length = 516 Score = 474 bits (239), Expect = e-133 Identities = 263/271 (97%) Strand = Plus / Plus Query: 2 cagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgtc 61 ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 242 cagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgtc 301 Query: 62 ccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggca 121 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 302 ccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggca 361 Query: 122 agtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgata 181 ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 362 agtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgata 421 Query: 182 cacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctgc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 cacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctgc 481 Query: 242 cgaacttgagatcgcccctggacgacccacg 272 ||||||||| ||||||||||||||||||||| Sbjct: 482 cgaacttgacatcgcccctggacgacccacg 512 >CG33239-RA feature: mRNA loc=X:complement(13787675..13788179, 13788288..13788298);ID=FBan0033239;gene_id=FBgn0053239;g ene_sym=CG33239;sym=CG33239;scaffold=AE003494;len=516 Length = 516 Score = 468 bits (236), Expect = e-131 Identities = 263/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33246-RA feature: mRNA loc=X:complement(13778791..13779295, 13779353..13779363);ID=FBan0033246;gene_id=FBgn0053246;g ene_sym=CG33246;sym=CG33246;scaffold=AE003494;len=516 Length = 516 Score = 468 bits (236), Expect = e-131 Identities = 263/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaacttttatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33242-RA feature: mRNA loc=X:complement(13783866..13784368, 13784430..13784440);ID=FBan0033242;gene_id=FBgn0053242;g ene_sym=CG33242;sym=CG33242;scaffold=AE003494;len=514 Length = 514 Score = 468 bits (236), Expect = e-131 Identities = 263/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 238 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 297 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 298 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 357 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 358 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 417 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 418 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 477 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 478 ccgaacttgacatcgcccctggacgacccacg 509 >CG33241-RA feature: mRNA loc=X:complement(13785137..13785641, 13785699..13785709);ID=FBan0033241;gene_id=FBgn0053241;g ene_sym=CG33241;sym=CG33241;scaffold=AE003494;len=516 Length = 516 Score = 468 bits (236), Expect = e-131 Identities = 263/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >Ste12DOR-RA feature: mRNA loc=X:join(13730869..13730879, 13730937..13731441);ID=FBan0032616;gene_id=FBgn0044817;g ene_sym=Ste12DOR;sym=CG32616;scaffold=AE003494;len=516 Length = 516 Score = 460 bits (232), Expect = e-129 Identities = 262/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatatgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcgtcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33236-RA feature: mRNA loc=X:complement(13791465..13791987, 13792045..13792055);ID=FBan0033236;gene_id=FBgn0052605;g ene_sym=CG33236;sym=CG33236;scaffold=AE003494;len=534 Length = 534 Score = 460 bits (232), Expect = e-129 Identities = 262/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33245-RA feature: mRNA loc=X:complement(13779948..13780564, 13780622..13780632);ID=FBan0033245;gene_id=FBgn0053245;g ene_sym=CG33245;sym=CG33245;scaffold=AE003494;len=628 Length = 628 Score = 460 bits (232), Expect = e-129 Identities = 262/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33244-RA feature: mRNA loc=X:complement(13781311..13781833, 13781891..13781901);ID=FBan0033244;gene_id=FBgn0053244;g ene_sym=CG33244;sym=CG33244;scaffold=AE003494;len=534 Length = 534 Score = 460 bits (232), Expect = e-129 Identities = 262/272 (96%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgt 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33240-RA feature: mRNA loc=X:complement(13786406..13786910, 13786968..13786978);ID=FBan0033240;gene_id=FBgn0053240;g ene_sym=CG33240;sym=CG33240;scaffold=AE003494;len=516 Length = 516 Score = 452 bits (228), Expect = e-127 Identities = 261/272 (95%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgc 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 >CG33238-RA feature: mRNA loc=X:complement(13788944..13789448, 13789511..13789518);ID=FBan0033238;gene_id=FBgn0052605;g ene_sym=CG33238;sym=CG33238;scaffold=AE003494;len=513 Length = 513 Score = 452 bits (228), Expect = e-127 Identities = 261/272 (95%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct: 238 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgt 297 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 298 cccaatatctcctgttataggcagaacaccctgccagtgggcctcagcgctgtatggggc 357 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 358 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 417 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 418 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 477 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 478 ccgaacttgacatcgcccctggacgacccacg 509 >CG33243-RA feature: mRNA loc=X:complement(13782598..13783102, 13783160..13783170);ID=FBan0033243;gene_id=FBgn0053243;g ene_sym=CG33243;sym=CG33243;scaffold=AE003494;len=516 Length = 516 Score = 444 bits (224), Expect = e-124 Identities = 260/272 (95%) Strand = Plus / Plus Query: 1 tcagagcgtggcgtgattgctatgcaccgaaaatatatgcaaggagattttgaatcgtgt 60 |||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||| Sbjct: 241 tcagagcgtggcctgattgctatgcaccgaaaatatttgcgaggagattttggatcgtgc 300 Query: 61 cccaatatctcctgtgataggcagaacaccctgccagtgggcctcagcgatgtatggggc 120 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 301 cccaatatctcctgttataggcagaacaccctgccagtgggcctcagcgctgtatggggc 360 Query: 121 aagtcaaccgtcaagatctactgcccacggtgtaaaaagaactttcatccgaagtctgat 180 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 361 aagtcaaccgtcaagatccactgcccacggtgtaaaagcaactttcatccgaagtctgat 420 Query: 181 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgctgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 acacagctggacggagcgatgttcgggcccagcttcccggacatcttcttctcgatgctg 480 Query: 241 ccgaacttgagatcgcccctggacgacccacg 272 |||||||||| ||||||||||||||||||||| Sbjct: 481 ccgaacttgacatcgcccctggacgacccacg 512 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6648 Number of Sequences: 18737 Number of extensions: 6648 Number of successful extensions: 405 Number of sequences better than 1.0e-100: 13 Number of HSP's better than 0.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 391 Number of HSP's gapped (non-prelim): 14 length of query: 368 length of database: 41,270,998 effective HSP length: 17 effective length of query: 351 effective length of database: 40,952,469 effective search space: 14374316619 effective search space used: 14374316619 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118888 AY118888|AY118888 Drosophila melanogaster HL08112 full insert cDNA. (615 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,771 Number of Sequences: 18737 Number of extensions: 11771 Number of successful extensions: 218 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 218 Number of HSP's gapped (non-prelim): 0 length of query: 615 length of database: 41,270,998 effective HSP length: 17 effective length of query: 598 effective length of database: 40,952,469 effective search space: 24489576462 effective search space used: 24489576462 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY118974 AY118974|AY118974 Drosophila melanogaster LP01161 full insert cDNA. (527 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,705 Number of Sequences: 18737 Number of extensions: 10705 Number of successful extensions: 185 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 185 Number of HSP's gapped (non-prelim): 0 length of query: 527 length of database: 41,270,998 effective HSP length: 17 effective length of query: 510 effective length of database: 40,952,469 effective search space: 20885759190 effective search space used: 20885759190 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119004 AY119004|AY119004 Drosophila melanogaster LP03188 full insert cDNA. (553 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,012 Number of Sequences: 18737 Number of extensions: 11012 Number of successful extensions: 305 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 305 Number of HSP's gapped (non-prelim): 0 length of query: 553 length of database: 41,270,998 effective HSP length: 17 effective length of query: 536 effective length of database: 40,952,469 effective search space: 21950523384 effective search space used: 21950523384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119020 AY119020|AY119020 Drosophila melanogaster LP04693 full insert cDNA. (2353 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4068-RB feature: mRNA loc=X:complement(4667275..4668743,466883... 478 e-133 CG4068-RA feature: mRNA loc=X:complement(4667275..4668743,466883... 478 e-133 >CG4068-RB feature: mRNA loc=X:complement(4667275..4668743,4668831..4669922, 4669988..4670679, 4676627..4676764);ID=FBan0004068;gene_id=FBgn0029738;gene _sym=CG4068;sym=CG4068;scaffold=AE003432;len=3391 Length = 3391 Score = 478 bits (241), Expect = e-133 Identities = 247/249 (99%) Strand = Plus / Plus Query: 557 gaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtag 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3009 gaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtag 3068 Query: 617 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3069 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 3128 Query: 677 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 736 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 3129 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 3188 Query: 737 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3189 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 3248 Query: 797 ccacgcaaa 805 ||||||||| Sbjct: 3249 ccacgcaaa 3257 Score = 438 bits (221), Expect = e-122 Identities = 242/249 (97%) Strand = Plus / Plus Query: 287 gagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtag 346 ||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 2739 gagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtag 2798 Query: 347 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 406 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2799 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2858 Query: 407 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 466 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2859 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2918 Query: 467 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2919 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2978 Query: 527 ccacgcaaa 535 ||||||||| Sbjct: 2979 ccacgcaaa 2987 Score = 436 bits (220), Expect = e-121 Identities = 235/240 (97%) Strand = Plus / Plus Query: 827 gaaccatacaaattgtaaccattatttgagtgttatttgttgaatgtagcgccctggtag 886 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 3009 gaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtag 3068 Query: 887 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 946 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 3069 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 3128 Query: 947 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 1006 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 3129 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 3188 Query: 1007 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 1066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3189 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 3248 Score = 432 bits (218), Expect = e-120 Identities = 239/246 (97%) Strand = Plus / Plus Query: 290 ccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtagcct 349 ||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| Sbjct: 3012 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 3071 Query: 350 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 409 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3072 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 3131 Query: 410 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 469 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 3132 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 3191 Query: 470 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3192 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 3251 Query: 530 cgcaaa 535 |||||| Sbjct: 3252 cgcaaa 3257 Score = 430 bits (217), Expect = e-119 Identities = 238/245 (97%) Strand = Plus / Plus Query: 1105 acacagagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccct 1164 |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct: 2734 acacagagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgcccc 2793 Query: 1165 ggtagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaat 1224 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2794 ggtagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaat 2853 Query: 1225 cttaaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaagg 1284 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2854 cttaaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaagg 2913 Query: 1285 agggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaa 1344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 agggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaa 2973 Query: 1345 tgagt 1349 ||||| Sbjct: 2974 tgagt 2978 Score = 428 bits (216), Expect = e-119 Identities = 249/260 (95%) Strand = Plus / Plus Query: 1090 cacacacatacacaaacacagagccatacaaattgtaaccattattagtgtgttaattat 1149 ||||||| ||||| ||||||| ||||||||||||||||||||||| | ||||||||| | Sbjct: 2989 cacacacccacacacacacagaaccatacaaattgtaaccattatttgagtgttaattgt 3048 Query: 1150 tgaatgtagcgccctggtagcctgtagtttgactccaacaagttcgctcccggcgcttca 1209 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3049 tgactgtagcgccctggtagcctgtagtttgactccaacaagttcgctcctggcgcttca 3108 Query: 1210 caggcgctggaaaatcttaaccgccggaagtcacttccgctggctttgattttccagcgt 1269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3109 caggcgctggaaaatcttaaccgccggaagtcacttccgctggctttgattttccagcgt 3168 Query: 1270 ctgtcgagcggaaggagggacttgtttgagtccaactacaggatactggggggcccttaa 1329 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3169 cagtcaagcggaaggagggacttgtttgagtccaactacaggatactggggggcccttaa 3228 Query: 1330 gaacagaatggggaatgagt 1349 |||||||||||||||||||| Sbjct: 3229 gaacagaatggggaatgagt 3248 Score = 426 bits (215), Expect = e-118 Identities = 236/243 (97%) Strand = Plus / Plus Query: 1 acagaaccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctgg 60 ||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||| Sbjct: 3006 acagaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctgg 3065 Query: 61 tagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatct 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3066 tagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatct 3125 Query: 121 taaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggag 180 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 3126 taaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggag 3185 Query: 181 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3186 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 3245 Query: 241 agt 243 ||| Sbjct: 3246 agt 3248 Score = 424 bits (214), Expect = e-117 Identities = 238/246 (96%) Strand = Plus / Plus Query: 560 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 619 |||||||||||||||| |||||| | |||||||||||| | |||||||||| |||||||| Sbjct: 2742 ccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtagcct 2801 Query: 620 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2802 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 2861 Query: 680 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 739 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 2862 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 2921 Query: 740 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2922 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 2981 Query: 800 cgcaaa 805 |||||| Sbjct: 2982 cgcaaa 2987 Score = 422 bits (213), Expect = e-117 Identities = 234/241 (97%) Strand = Plus / Plus Query: 1388 acacagagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccct 1447 |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct: 2734 acacagagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgcccc 2793 Query: 1448 ggtagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaat 1507 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2794 ggtagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaat 2853 Query: 1508 cttaaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaagg 1567 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2854 cttaaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaagg 2913 Query: 1568 agggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaa 1627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 agggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaa 2973 Query: 1628 t 1628 | Sbjct: 2974 t 2974 Score = 420 bits (212), Expect = e-116 Identities = 233/240 (97%) Strand = Plus / Plus Query: 1959 gagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtag 2018 ||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 2739 gagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtag 2798 Query: 2019 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 2078 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2799 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2858 Query: 2079 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 2138 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2859 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2918 Query: 2139 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2919 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2978 Score = 420 bits (212), Expect = e-116 Identities = 233/240 (97%) Strand = Plus / Plus Query: 1676 gagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtag 1735 ||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 2739 gagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtag 2798 Query: 1736 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 1795 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2799 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2858 Query: 1796 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 1855 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2859 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2918 Query: 1856 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 1915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2919 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2978 Score = 420 bits (212), Expect = e-116 Identities = 245/256 (95%) Strand = Plus / Plus Query: 1373 cacacacatacacaaacacagagccatacaaattgtaaccattattagtgtgttaattat 1432 ||||||| ||||| ||||||| ||||||||||||||||||||||| | ||||||||| | Sbjct: 2989 cacacacccacacacacacagaaccatacaaattgtaaccattatttgagtgttaattgt 3048 Query: 1433 tgaatgtagcgccctggtagcctgtagtttgactccaacaagttcgctcccggcgcttca 1492 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3049 tgactgtagcgccctggtagcctgtagtttgactccaacaagttcgctcctggcgcttca 3108 Query: 1493 caggcgctggaaaatcttaaccgccggaagtcacttccgctggctttgattttccagcgt 1552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3109 caggcgctggaaaatcttaaccgccggaagtcacttccgctggctttgattttccagcgt 3168 Query: 1553 ctgtcgagcggaaggagggacttgtttgagtccaactacaggatactggggggcccttaa 1612 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3169 cagtcaagcggaaggagggacttgtttgagtccaactacaggatactggggggcccttaa 3228 Query: 1613 gaacagaatggggaat 1628 |||||||||||||||| Sbjct: 3229 gaacagaatggggaat 3244 Score = 418 bits (211), Expect = e-116 Identities = 235/243 (96%) Strand = Plus / Plus Query: 1 acagaaccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctgg 60 ||||| |||||||||||||||| |||||||||||||||||| || |||||||||||| || Sbjct: 2736 acagagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccgg 2795 Query: 61 tagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatct 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2796 tagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatct 2855 Query: 121 taaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggag 180 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 2856 taaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggag 2915 Query: 181 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2916 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 2975 Query: 241 agt 243 ||| Sbjct: 2976 agt 2978 Score = 414 bits (209), Expect = e-114 Identities = 230/237 (97%) Strand = Plus / Plus Query: 1962 ccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtagcct 2021 ||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| Sbjct: 3012 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 3071 Query: 2022 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 2081 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3072 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 3131 Query: 2082 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 2141 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 3132 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 3191 Query: 2142 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2198 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3192 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 3248 Score = 414 bits (209), Expect = e-114 Identities = 230/237 (97%) Strand = Plus / Plus Query: 1679 ccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtagcct 1738 ||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| Sbjct: 3012 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 3071 Query: 1739 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 1798 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3072 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 3131 Query: 1799 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 1858 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 3132 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 3191 Query: 1859 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 1915 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3192 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 3248 Score = 398 bits (201), Expect = e-110 Identities = 228/237 (96%) Strand = Plus / Plus Query: 830 ccatacaaattgtaaccattatttgagtgttatttgttgaatgtagcgccctggtagcct 889 |||||||||||||||| |||||| | |||||| ||||| |||||||||||| |||||||| Sbjct: 2742 ccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtagcct 2801 Query: 890 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 949 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2802 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 2861 Query: 950 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 1009 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 2862 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 2921 Query: 1010 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 1066 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2922 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2978 >CG4068-RA feature: mRNA loc=X:complement(4667275..4668743,4668831..4669922, 4669988..4670460);ID=FBan0004068;gene_id=FBgn0029738;gene _sym=CG4068;sym=CG4068;scaffold=AE003432;len=3034 Length = 3034 Score = 478 bits (241), Expect = e-133 Identities = 247/249 (99%) Strand = Plus / Plus Query: 557 gaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtag 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2652 gaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtag 2711 Query: 617 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2712 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2771 Query: 677 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 736 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2772 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2831 Query: 737 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2832 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2891 Query: 797 ccacgcaaa 805 ||||||||| Sbjct: 2892 ccacgcaaa 2900 Score = 438 bits (221), Expect = e-122 Identities = 242/249 (97%) Strand = Plus / Plus Query: 287 gagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtag 346 ||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 2382 gagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtag 2441 Query: 347 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 406 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2442 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2501 Query: 407 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 466 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2502 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2561 Query: 467 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2562 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2621 Query: 527 ccacgcaaa 535 ||||||||| Sbjct: 2622 ccacgcaaa 2630 Score = 436 bits (220), Expect = e-121 Identities = 235/240 (97%) Strand = Plus / Plus Query: 827 gaaccatacaaattgtaaccattatttgagtgttatttgttgaatgtagcgccctggtag 886 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 2652 gaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtag 2711 Query: 887 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 946 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2712 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2771 Query: 947 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 1006 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2772 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2831 Query: 1007 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 1066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2832 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2891 Score = 432 bits (218), Expect = e-120 Identities = 239/246 (97%) Strand = Plus / Plus Query: 290 ccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtagcct 349 ||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| Sbjct: 2655 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 2714 Query: 350 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 409 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2715 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 2774 Query: 410 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 469 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 2775 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 2834 Query: 470 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2835 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 2894 Query: 530 cgcaaa 535 |||||| Sbjct: 2895 cgcaaa 2900 Score = 430 bits (217), Expect = e-119 Identities = 238/245 (97%) Strand = Plus / Plus Query: 1105 acacagagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccct 1164 |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct: 2377 acacagagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgcccc 2436 Query: 1165 ggtagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaat 1224 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2437 ggtagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaat 2496 Query: 1225 cttaaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaagg 1284 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2497 cttaaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaagg 2556 Query: 1285 agggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaa 1344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2557 agggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaa 2616 Query: 1345 tgagt 1349 ||||| Sbjct: 2617 tgagt 2621 Score = 428 bits (216), Expect = e-119 Identities = 249/260 (95%) Strand = Plus / Plus Query: 1090 cacacacatacacaaacacagagccatacaaattgtaaccattattagtgtgttaattat 1149 ||||||| ||||| ||||||| ||||||||||||||||||||||| | ||||||||| | Sbjct: 2632 cacacacccacacacacacagaaccatacaaattgtaaccattatttgagtgttaattgt 2691 Query: 1150 tgaatgtagcgccctggtagcctgtagtttgactccaacaagttcgctcccggcgcttca 1209 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2692 tgactgtagcgccctggtagcctgtagtttgactccaacaagttcgctcctggcgcttca 2751 Query: 1210 caggcgctggaaaatcttaaccgccggaagtcacttccgctggctttgattttccagcgt 1269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2752 caggcgctggaaaatcttaaccgccggaagtcacttccgctggctttgattttccagcgt 2811 Query: 1270 ctgtcgagcggaaggagggacttgtttgagtccaactacaggatactggggggcccttaa 1329 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2812 cagtcaagcggaaggagggacttgtttgagtccaactacaggatactggggggcccttaa 2871 Query: 1330 gaacagaatggggaatgagt 1349 |||||||||||||||||||| Sbjct: 2872 gaacagaatggggaatgagt 2891 Score = 426 bits (215), Expect = e-118 Identities = 236/243 (97%) Strand = Plus / Plus Query: 1 acagaaccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctgg 60 ||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||| Sbjct: 2649 acagaaccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctgg 2708 Query: 61 tagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatct 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2709 tagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatct 2768 Query: 121 taaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggag 180 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 2769 taaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggag 2828 Query: 181 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2829 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 2888 Query: 241 agt 243 ||| Sbjct: 2889 agt 2891 Score = 424 bits (214), Expect = e-117 Identities = 238/246 (96%) Strand = Plus / Plus Query: 560 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 619 |||||||||||||||| |||||| | |||||||||||| | |||||||||| |||||||| Sbjct: 2385 ccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtagcct 2444 Query: 620 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2445 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 2504 Query: 680 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 739 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 2505 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 2564 Query: 740 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2565 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagtcca 2624 Query: 800 cgcaaa 805 |||||| Sbjct: 2625 cgcaaa 2630 Score = 422 bits (213), Expect = e-117 Identities = 234/241 (97%) Strand = Plus / Plus Query: 1388 acacagagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccct 1447 |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct: 2377 acacagagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgcccc 2436 Query: 1448 ggtagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaat 1507 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2437 ggtagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaat 2496 Query: 1508 cttaaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaagg 1567 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2497 cttaaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaagg 2556 Query: 1568 agggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaa 1627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2557 agggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaa 2616 Query: 1628 t 1628 | Sbjct: 2617 t 2617 Score = 420 bits (212), Expect = e-116 Identities = 233/240 (97%) Strand = Plus / Plus Query: 1676 gagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtag 1735 ||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 2382 gagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtag 2441 Query: 1736 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 1795 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2442 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2501 Query: 1796 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 1855 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2502 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2561 Query: 1856 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 1915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2562 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2621 Score = 420 bits (212), Expect = e-116 Identities = 233/240 (97%) Strand = Plus / Plus Query: 1959 gagccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtag 2018 ||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 2382 gagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtag 2441 Query: 2019 cctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaa 2078 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2442 cctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaa 2501 Query: 2079 ccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggaggga 2138 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 2502 ccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggaggga 2561 Query: 2139 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2562 cttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2621 Score = 420 bits (212), Expect = e-116 Identities = 245/256 (95%) Strand = Plus / Plus Query: 1373 cacacacatacacaaacacagagccatacaaattgtaaccattattagtgtgttaattat 1432 ||||||| ||||| ||||||| ||||||||||||||||||||||| | ||||||||| | Sbjct: 2632 cacacacccacacacacacagaaccatacaaattgtaaccattatttgagtgttaattgt 2691 Query: 1433 tgaatgtagcgccctggtagcctgtagtttgactccaacaagttcgctcccggcgcttca 1492 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2692 tgactgtagcgccctggtagcctgtagtttgactccaacaagttcgctcctggcgcttca 2751 Query: 1493 caggcgctggaaaatcttaaccgccggaagtcacttccgctggctttgattttccagcgt 1552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2752 caggcgctggaaaatcttaaccgccggaagtcacttccgctggctttgattttccagcgt 2811 Query: 1553 ctgtcgagcggaaggagggacttgtttgagtccaactacaggatactggggggcccttaa 1612 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2812 cagtcaagcggaaggagggacttgtttgagtccaactacaggatactggggggcccttaa 2871 Query: 1613 gaacagaatggggaat 1628 |||||||||||||||| Sbjct: 2872 gaacagaatggggaat 2887 Score = 418 bits (211), Expect = e-116 Identities = 235/243 (96%) Strand = Plus / Plus Query: 1 acagaaccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctgg 60 ||||| |||||||||||||||| |||||||||||||||||| || |||||||||||| || Sbjct: 2379 acagagccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccgg 2438 Query: 61 tagcctgtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatct 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2439 tagcctgtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatct 2498 Query: 121 taaccgccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggag 180 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 2499 taaccgccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggag 2558 Query: 181 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2559 ggacttgtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatg 2618 Query: 241 agt 243 ||| Sbjct: 2619 agt 2621 Score = 414 bits (209), Expect = e-114 Identities = 230/237 (97%) Strand = Plus / Plus Query: 1962 ccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtagcct 2021 ||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| Sbjct: 2655 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 2714 Query: 2022 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 2081 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2715 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 2774 Query: 2082 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 2141 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 2775 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 2834 Query: 2142 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2198 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2835 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2891 Score = 414 bits (209), Expect = e-114 Identities = 230/237 (97%) Strand = Plus / Plus Query: 1679 ccatacaaattgtaaccattattagtgtgttaattattgaatgtagcgccctggtagcct 1738 ||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| Sbjct: 2655 ccatacaaattgtaaccattatttgagtgttaattgttgactgtagcgccctggtagcct 2714 Query: 1739 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 1798 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2715 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 2774 Query: 1799 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 1858 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 2775 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 2834 Query: 1859 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 1915 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2835 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2891 Score = 398 bits (201), Expect = e-110 Identities = 228/237 (96%) Strand = Plus / Plus Query: 830 ccatacaaattgtaaccattatttgagtgttatttgttgaatgtagcgccctggtagcct 889 |||||||||||||||| |||||| | |||||| ||||| |||||||||||| |||||||| Sbjct: 2385 ccatacaaattgtaacaattattagtgtgttaattgtttaatgtagcgccccggtagcct 2444 Query: 890 gtagtttgactccaacaagttcgctcccggcgcttcacaggcgctggaaaatcttaaccg 949 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2445 gtagtttgactccaacaagttcgctcctggcgcttcacaggcgctggaaaatcttaaccg 2504 Query: 950 ccggaagtcacttccgctggctttgattttccagcgtctgtcgagcggaaggagggactt 1009 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 2505 ccggaagtcacttccgctggctttgattttccagcgtcagtcaagcggaaggagggactt 2564 Query: 1010 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 1066 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2565 gtttgagtccaactacaggatactggggggcccttaagaacagaatggggaatgagt 2621 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 40,504 Number of Sequences: 18737 Number of extensions: 40504 Number of successful extensions: 1187 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1129 Number of HSP's gapped (non-prelim): 58 length of query: 2353 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2335 effective length of database: 40,933,732 effective search space: 95580264220 effective search space used: 95580264220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119042 AY119042|AY119042 Drosophila melanogaster LP06491 full insert cDNA. (403 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7966 Number of Sequences: 18737 Number of extensions: 7966 Number of successful extensions: 589 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 589 Number of HSP's gapped (non-prelim): 0 length of query: 403 length of database: 41,270,998 effective HSP length: 17 effective length of query: 386 effective length of database: 40,952,469 effective search space: 15807653034 effective search space used: 15807653034 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119055 AY119055|AY119055 Drosophila melanogaster LP07070 full insert cDNA. (1274 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Adk1-RA feature: mRNA loc=3L:complement(12157943..12158185,12158... 1804 0.0 Adk1-RB feature: mRNA loc=3L:complement(12157943..12158185,12158... 1451 0.0 CR30425-RA feature: ncRNA loc=2R:complement(19946983..19947159,1... 595 e-169 >Adk1-RA feature: mRNA loc=3L:complement(12157943..12158185,12158259..12158636, 12158921..12159043, 12161266..12161629);ID=FBan0017146;gene_id=FBgn0022709;ge ne_sym=Adk1;sym=CG17146;scaffold=AE003542;len=1108 Length = 1108 Score = 1804 bits (910), Expect = 0.0 Identities = 910/910 (100%) Strand = Plus / Minus Query: 3 tagatttagactaatttatttggtgtttcgcattcatttgtgctcagctctgagattgtg 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 tagatttagactaatttatttggtgtttcgcattcatttgtgctcagctctgagattgtg 1037 Query: 63 tgtttcgcgctaaaaagtgcactagaaatgttgactttggtaccggtttcctaatggatt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 tgtttcgcgctaaaaagtgcactagaaatgttgactttggtaccggtttcctaatggatt 977 Query: 123 agcattctactagcactgggcggcggcattctgctgcttcttcttcagcacacagtcaat 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 agcattctactagcactgggcggcggcattctgctgcttcttcttcagcacacagtcaat 917 Query: 183 ggcctggacgacttccagaaagatgtcgtccacgtcacgctcggcattgatcgtaagggt 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 ggcctggacgacttccagaaagatgtcgtccacgtcacgctcggcattgatcgtaagggt 857 Query: 243 tttgggctcataaagttccaaaattgcattggtgttctgcttgaaggtcaggaggcgtgc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 856 tttgggctcataaagttccaaaattgcattggtgttctgcttgaaggtcaggaggcgtgc 797 Query: 303 cctaatggtcttctcgttgtcatcgtcccgtttcaccgccgaggcagcggcacgtgccat 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 796 cctaatggtcttctcgttgtcatcgtcccgtttcaccgccgaggcagcggcacgtgccat 737 Query: 363 gatgcgctgcaccatcgtgtcctcggagcactcaaagtacagcgccagatcggcgggtgc 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 736 gatgcgctgcaccatcgtgtcctcggagcactcaaagtacagcgccagatcggcgggtgc 677 Query: 423 aatgcgcgcctcgaactcaatgccctggttcttctgacgcggatatccatcgatgaggaa 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 676 aatgcgcgcctcgaactcaatgccctggttcttctgacgcggatatccatcgatgaggaa 617 Query: 483 tcccttcgagctacccttggcccgcgtgatggcgtcgttcagcagggacagcacctcgtc 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 tcccttcgagctacccttggcccgcgtgatggcgtcgttcagcagggacagcacctcgtc 557 Query: 543 gttggacaccaggccaccgctggccatcacagcctgcagctgacgacccttgtccgatcc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 gttggacaccaggccaccgctggccatcacagcctgcagctgacgacccttgtccgatcc 497 Query: 603 agaagccacctcattgcgcagcaaatcgccgctgctcagatgtgtgaatccgtatttttc 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 agaagccacctcattgcgcagcaaatcgccgctgctcagatgtgtgaatccgtatttttc 437 Query: 663 cacgattttggcgcactgagtgcccttgccgcacccgggtccacccaagatccagatgat 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 cacgattttggcgcactgagtgcccttgccgcacccgggtccacccaagatccagatgat 377 Query: 723 gggtatatcagccatgatgatgatgatgtatactagatatacacgtcgctgctgcgggcc 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 gggtatatcagccatgatgatgatgatgtatactagatatacacgtcgctgctgcgggcc 317 Query: 783 tttcgctgaagaaatcgcgaaatattcggtagtttgttagccggatgccttactagcctt 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 tttcgctgaagaaatcgcgaaatattcggtagtttgttagccggatgccttactagcctt 257 Query: 843 cccttagcgccacttggtcggtcgattctcgcccagattctcgaatgctccgcccgactg 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 cccttagcgccacttggtcggtcgattctcgcccagattctcgaatgctccgcccgactg 197 Query: 903 ttttccaccc 912 |||||||||| Sbjct: 196 ttttccaccc 187 >Adk1-RB feature: mRNA loc=3L:complement(12157943..12158185,12158259..12158636, 12158921..12159043,12159326..12159409, 12161266..12161629);ID=FBan0017146;gene_id=FBgn0022709;ge ne_sym=Adk1;sym=CG17146;scaffold=AE003542;len=1192 Length = 1192 Score = 1451 bits (732), Expect = 0.0 Identities = 732/732 (100%) Strand = Plus / Minus Query: 3 tagatttagactaatttatttggtgtttcgcattcatttgtgctcagctctgagattgtg 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 tagatttagactaatttatttggtgtttcgcattcatttgtgctcagctctgagattgtg 1121 Query: 63 tgtttcgcgctaaaaagtgcactagaaatgttgactttggtaccggtttcctaatggatt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 tgtttcgcgctaaaaagtgcactagaaatgttgactttggtaccggtttcctaatggatt 1061 Query: 123 agcattctactagcactgggcggcggcattctgctgcttcttcttcagcacacagtcaat 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1060 agcattctactagcactgggcggcggcattctgctgcttcttcttcagcacacagtcaat 1001 Query: 183 ggcctggacgacttccagaaagatgtcgtccacgtcacgctcggcattgatcgtaagggt 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1000 ggcctggacgacttccagaaagatgtcgtccacgtcacgctcggcattgatcgtaagggt 941 Query: 243 tttgggctcataaagttccaaaattgcattggtgttctgcttgaaggtcaggaggcgtgc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 tttgggctcataaagttccaaaattgcattggtgttctgcttgaaggtcaggaggcgtgc 881 Query: 303 cctaatggtcttctcgttgtcatcgtcccgtttcaccgccgaggcagcggcacgtgccat 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 cctaatggtcttctcgttgtcatcgtcccgtttcaccgccgaggcagcggcacgtgccat 821 Query: 363 gatgcgctgcaccatcgtgtcctcggagcactcaaagtacagcgccagatcggcgggtgc 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 820 gatgcgctgcaccatcgtgtcctcggagcactcaaagtacagcgccagatcggcgggtgc 761 Query: 423 aatgcgcgcctcgaactcaatgccctggttcttctgacgcggatatccatcgatgaggaa 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 aatgcgcgcctcgaactcaatgccctggttcttctgacgcggatatccatcgatgaggaa 701 Query: 483 tcccttcgagctacccttggcccgcgtgatggcgtcgttcagcagggacagcacctcgtc 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 tcccttcgagctacccttggcccgcgtgatggcgtcgttcagcagggacagcacctcgtc 641 Query: 543 gttggacaccaggccaccgctggccatcacagcctgcagctgacgacccttgtccgatcc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 gttggacaccaggccaccgctggccatcacagcctgcagctgacgacccttgtccgatcc 581 Query: 603 agaagccacctcattgcgcagcaaatcgccgctgctcagatgtgtgaatccgtatttttc 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 agaagccacctcattgcgcagcaaatcgccgctgctcagatgtgtgaatccgtatttttc 521 Query: 663 cacgattttggcgcactgagtgcccttgccgcacccgggtccacccaagatccagatgat 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 cacgattttggcgcactgagtgcccttgccgcacccgggtccacccaagatccagatgat 461 Query: 723 gggtatatcagc 734 |||||||||||| Sbjct: 460 gggtatatcagc 449 >CR30425-RA feature: ncRNA loc=2R:complement(19946983..19947159,19947268..19947358, 19947451..19947499);ID=FBan0030425;gene_id=FBgn0047072;ge ne_sym=CR30425;sym=CR30425;type=ncRNA;scaffold=AE003465;l en=317 Length = 317 Score = 595 bits (300), Expect = e-169 Identities = 300/300 (100%) Strand = Plus / Plus Query: 911 ccgtcgtccagaccagaaggaaaatgagagctaagtggcgtaagaagcgtatgcgtaggt 970 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15 ccgtcgtccagaccagaaggaaaatgagagctaagtggcgtaagaagcgtatgcgtaggt 74 Query: 971 tgaagcgtaagcgcagaaagatgcgtgcaaggtccaagtaagcgcagcagcattgcccac 1030 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 tgaagcgtaagcgcagaaagatgcgtgcaaggtccaagtaagcgcagcagcattgcccac 134 Query: 1031 taaatggaactcttgattgatgctaacaccgaaacgaaaaacgccgactgggtagcccta 1090 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 taaatggaactcttgattgatgctaacaccgaaacgaaaaacgccgactgggtagcccta 194 Query: 1091 aaatggtggccctaaagtaattttgcaaaccagttttcacacaaacgtacatgtgcattt 1150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 aaatggtggccctaaagtaattttgcaaaccagttttcacacaaacgtacatgtgcattt 254 Query: 1151 taaattcacgtaaaaattgattctaataaattactagattttcgccaaggttccacaact 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 taaattcacgtaaaaattgattctaataaattactagattttcgccaaggttccacaact 314 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 32,001 Number of Sequences: 18737 Number of extensions: 32001 Number of successful extensions: 1174 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1170 Number of HSP's gapped (non-prelim): 4 length of query: 1274 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1256 effective length of database: 40,933,732 effective search space: 51412767392 effective search space used: 51412767392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119067 AY119067|AY119067 Drosophila melanogaster LP08165 full insert cDNA. (827 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32697-RC feature: mRNA loc=X:complement(9367683..9368316,93683... 769 0.0 CG32697-RB feature: mRNA loc=X:complement(9367683..9368316,93683... 769 0.0 CG32697-RA feature: mRNA loc=X:complement(9367683..9368316,93683... 769 0.0 >CG32697-RC feature: mRNA loc=X:complement(9367683..9368316,9368380..9368587, 9368652..9368881,9368947..9369107,9369178..9370079, 9382641..9382871,9382941..9383351, 9397831..9397898);ID=FBan0032697;gene_id=FBgn0052697;gen e_sym=CG32697;sym=CG32697;scaffold=AE003448;len=2845 Length = 2845 Score = 769 bits (388), Expect = 0.0 Identities = 388/388 (100%) Strand = Plus / Minus Query: 1 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 615 Query: 61 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 555 Query: 121 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 495 Query: 181 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 435 Query: 241 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 375 Query: 301 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 315 Query: 361 atgcgagatgtggcgcctcacaggcgca 388 |||||||||||||||||||||||||||| Sbjct: 314 atgcgagatgtggcgcctcacaggcgca 287 >CG32697-RB feature: mRNA loc=X:complement(9367683..9368316,9368380..9368587, 9368652..9368881,9368947..9369107,9369178..9370079, 9382641..9382871,9382941..9383351, 9384695..9384889);ID=FBan0032697;gene_id=FBgn0052697;gen e_sym=CG32697;sym=CG32697;scaffold=AE003448;len=2972 Length = 2972 Score = 769 bits (388), Expect = 0.0 Identities = 388/388 (100%) Strand = Plus / Minus Query: 1 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 801 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 742 Query: 61 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 682 Query: 121 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 622 Query: 181 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 562 Query: 241 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 502 Query: 301 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 442 Query: 361 atgcgagatgtggcgcctcacaggcgca 388 |||||||||||||||||||||||||||| Sbjct: 441 atgcgagatgtggcgcctcacaggcgca 414 >CG32697-RA feature: mRNA loc=X:complement(9367683..9368316,9368380..9368587, 9368652..9368881,9368947..9369107,9369178..9370079, 9382641..9382871,9382941..9383351, 9389469..9389741);ID=FBan0032697;gene_id=FBgn0052697;gen e_sym=CG32697;sym=CG32697;scaffold=AE003448;len=3050 Length = 3050 Score = 769 bits (388), Expect = 0.0 Identities = 388/388 (100%) Strand = Plus / Minus Query: 1 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 879 gtcgaagttggaatacttggagccgctcatgtcgtagataaaaacgagcccggcacgctg 820 Query: 61 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 819 cgtctccgaatcctggagcgcactgtccagctgatagacgatgccctgcagcgtggttgt 760 Query: 121 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 gtgcgaaacgctcagcggactgtgtcgattggcggtgaaaagggcgatggcagcgccact 700 Query: 181 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 699 ggaagtgcgtgcgggcaggattgtgaacttgccggtctgcaactcggagcgcaagggctc 640 Query: 241 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 cacatccggatcgatgttatatagatactccttcaggcggatctgttcatgctgttcgta 580 Query: 301 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 cagtgagactgctcgtggtatatcaaatttacgggcgtacaaaaacttcacggctgtcgt 520 Query: 361 atgcgagatgtggcgcctcacaggcgca 388 |||||||||||||||||||||||||||| Sbjct: 519 atgcgagatgtggcgcctcacaggcgca 492 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 56,512 Number of Sequences: 18737 Number of extensions: 56512 Number of successful extensions: 6402 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6396 Number of HSP's gapped (non-prelim): 6 length of query: 827 length of database: 41,270,998 effective HSP length: 17 effective length of query: 810 effective length of database: 40,952,469 effective search space: 33171499890 effective search space used: 33171499890 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119079 AY119079|AY119079 Drosophila melanogaster LP09838 full insert cDNA. (1113 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,291 Number of Sequences: 18737 Number of extensions: 18291 Number of successful extensions: 311 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 311 Number of HSP's gapped (non-prelim): 0 length of query: 1113 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1095 effective length of database: 40,933,732 effective search space: 44822436540 effective search space used: 44822436540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119092 AY119092|AY119092 Drosophila melanogaster LP12023 full insert cDNA. (313 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9231 Number of Sequences: 18737 Number of extensions: 9231 Number of successful extensions: 760 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 760 Number of HSP's gapped (non-prelim): 0 length of query: 313 length of database: 41,270,998 effective HSP length: 16 effective length of query: 297 effective length of database: 40,971,206 effective search space: 12168448182 effective search space used: 12168448182 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119114 AY119114|AY119114 Drosophila melanogaster RE15216 full insert cDNA. (2237 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33217-RA feature: mRNA loc=3L:join(23043309..23043396,23043478... 4266 0.0 >CG33217-RA feature: mRNA loc=3L:join(23043309..23043396,23043478..23043678, 23043995..23044529,23044591..23044767,23045538..23045648, 23047788..23047932,23048467..23048628, 23048686..23049489);ID=FBan0033217;gene_id=FBgn0053217;ge ne_sym=CG33217;sym=CG33217;scaffold=AE002786;len=2223 Length = 2223 Score = 4266 bits (2152), Expect = 0.0 Identities = 2197/2219 (99%) Strand = Plus / Plus Query: 1 acactaatttgataacagcgtcaaccacatgtcggctttatttataatgttggaatcgaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acactaatttgataacagcgtcaaccacatgtcggctttatttataatgttggaatcgaa 60 Query: 61 ataagttaggaaagtgtgattcagtttgatatcagtatggatcaattcataacttcgact 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ataagttaggaaagtgtgattcagtttgatatcagtatggatcaattcataacttcgact 120 Query: 121 ttgaaaaaccgtagacgacgttctcttggattgcgactcttaatatgttaccttnnnnnn 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttgaaaaaccgtagacgacgttctcttggattgcgactcttaatatgttaccttaaaaaa 180 Query: 181 ngtgacattaaattagaggaaaatgttaatacatggacatatttattagttcaatcatgc 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agtgacattaaattagaggaaaatgttaatacatggacatatttattagttcaatcatgc 240 Query: 241 aaattacctgagttgtgttcatatggtgatttaatattttccgctatggcactccttctg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaattacctgagttgtgttcatatggtgatttaatattttccgctatggcactccttctg 300 Query: 301 gacaaaatccagagtgacggtaatgtgtcaaaagtattcgcatctgctcatttatctaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gacaaaatccagagtgacggtaatgtgtcaaaagtattcgcatctgctcatttatctaaa 360 Query: 361 gtactggaatgcttatctcacaacgaaatatataagcacaatcgctcaactattgctgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gtactggaatgcttatctcacaacgaaatatataagcacaatcgctcaactattgctgcc 420 Query: 421 ttacacacaatcaagaaatgcctaaaatattacccaaaaggaataaaaactaaatcatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttacacacaatcaagaaatgcctaaaatattacccaaaaggaataaaaactaaatcatca 480 Query: 481 agtatcaaaaatatattagtactattaattgacagccaaaacgatgaagttgtttatcaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 agtatcaaaaatatattagtactattaattgacagccaaaacgatgaagttgtttatcaa 540 Query: 541 tctggtgaatgttggtttttgttacacaaaattcatggcatttccgataaagaacatatg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tctggtgaatgttggtttttgttacacaaaattcatggcatttccgataaagaacatatg 600 Query: 601 gataataaaactgaatggaaggattttcaattatctttactgagtaatatccaatatatt 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gataataaaactgaatggaaggattttcaattatctttactgagtaatatccaatatatt 660 Query: 661 ataaatagaacaatagttatgcctgacgaatccgttaacagcccttttatgccaaatcat 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ataaatagaacaatagttatgcctgacgaatccgttaacagcccttttatgccaaatcat 720 Query: 721 tttggagctttcacttttgtagctgtaaaagatccttttgaaagggcttcaaaagctttt 780 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 721 tttggagctttcacttttgtagctgtaaaagatccttttgaaagagcttcaaaagctttt 780 Query: 781 cgacggatttttaatcttattgaatatatcaaaattgctttaagcaaacaatttgttttc 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 cgacggatttttaatcttattgaatatatcaaaattgctttaagcaaacaatttgttttc 840 Query: 841 aaaaagaatatttgcgtacatcaaatcttgtctttaatacaaaatggactaaatgcacac 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 aaaaagaatatttgcgtacatcaaatcttgtctttaatacaaaatggactaaatgcacac 900 Query: 901 gtaaaccaacaaaatgtacgaattaatcatgcatatcttgagacattttttccgcaaatg 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 gtaaaccaacaaaatgtacgaattaatcatgcatatcttgagacattttttccgcaaatg 960 Query: 961 cacataaaattattggagcttttggaaattgtcattaaaacatgtcatacacacctaagg 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 cacataaaattattggagcttttggaaattgtcattaaaacatgtcatacacacctaagg 1020 Query: 1021 atggactttcggcttgttctaaatattttaatggaagcccttgaaaaaacaaacaaatca 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 atggactttcggcttgttctaaatattttaatggaagcccttgaaaaaacaaacaaatca 1080 Query: 1081 atgttactagaatcaaatttaaaggaagttttgaatatgcgcctagttgtgtacagagta 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 atgttactagaatcaaatttaaaggaagttttgaatatgcgcctagttgtgtacagagta 1140 Query: 1141 atatctttatggtgctctactctacaagaaggaagccattgcgaaattattgcggatact 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 atatctttatggtgctctactctacaagaaggaagccattgcgaaattattgcggatact 1200 Query: 1201 cttatcaaagaagtgtttgatgatatattaacgcgaagcccaactactnnnnnnngtgta 1260 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1201 cttatcaaagaagtgtttgatgatatattaacgcgaagcccaactactaaaaaaagtgta 1260 Query: 1261 aacgcaccatacatgaaactttcacctgaaactctattttcgatgttgaaatgttcatta 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 aacgcaccatacatgaaactttcacctgaaactctattttcgatgttgaaatgttcatta 1320 Query: 1321 agtaatgaagactatcgtatgcttagtcaacaagcacactcttgcctacaacagtttttg 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 agtaatgaagactatcgtatgcttagtcaacaagcacactcttgcctacaacagtttttg 1380 Query: 1381 ttatcttctggtcatttgataaagcatcaacttttaaaggcggtgcaccacaccttattg 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 ttatcttctggtcatttgataaagcatcaacttttaaaggcggtgcaccacaccttattg 1440 Query: 1441 ggaatttgtgttcaaatgcattctcagtctagcaaagaaccagacttgtgggatatttgg 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1441 ggaatttgtgttcaaatgcattctcagtctagcaaagaaccagacttgtgggatatttgg 1500 Query: 1501 gacgggcgcttggaagtttataagtctttcacagttctattgaaattacgaaactatgga 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1501 gacgggcgcttggaagtttataagtctttcacagttctattgaaattacgaaactatgga 1560 Query: 1561 tgtcctacgccttctgaaataatttggaatcttttgcacgaatcccgattatttaataat 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1561 tgtcctacgccttctgaaataatttggaatcttttgcacgaatcccgattatttaataat 1620 Query: 1621 aacattgcacttaagcaaagtcatagttctaacttggaaacgatgcttcatcctcaaaag 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1621 aacattgcacttaagcaaagtcatagttctaacttggaaacgatgcttcatcctcaaaag 1680 Query: 1681 gcggatattaactttaaaagtgttgacaatttaaagaaaacaatcgccttttcaacaaat 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1681 gcggatattaactttaaaagtgttgacaatttaaagaaaacaatcgccttttcaacaaat 1740 Query: 1741 aaaacggaaaatagacacgatttgttacaaactatcaagagtcccgaagaccaattatgt 1800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1741 aaaacggaaaatagacacgatttgttacaaactatcaagagtcccgaagaccaattatgt 1800 Query: 1801 aataatgaaagtccactgatatcggccattgaaaccattgcaaataataaggataatcnn 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1801 aataatgaaagtccactgatatcggccattgaaaccattgcaaataataaggataatcaa 1860 Query: 1861 nnnnnccctggctacgacaataattcgttgaataaaaagaaaccttttgaagtagtttgt 1920 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1861 aaaaaccctggctacgacaataattcgttgaataaaaagaaaccttttgaagtagtttgt 1920 Query: 1921 aaaaatgactcaaaagatttaattgctgaagatacaccaaaaaatattaatgagatacca 1980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1921 aaaaatgactcaaaagatttaattgctgaagatacaccaaaaaatattaatgagatacca 1980 Query: 1981 gatggccctttgctctcatcaaaaatcaacagttcagagagtttacaaggacaaccccta 2040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1981 gatggccctttgctctcatcaaaaatcaacagttcagagagtttacaaggacaaccccta 2040 Query: 2041 gaaattttgaatggcaataatgtgaactctaatttaatatcatcctgttgcagtgctgaa 2100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2041 gaaattttgaatggcaataatgtgaactctaatttaatatcatcctgttgcagtgctgaa 2100 Query: 2101 gaatctgtaaaaatgtttccttcgaacttggaaaaattagatgatgctaaaatgatagcc 2160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2101 gaatctgtaaaaatgtttccttcgaacttggaaaaattagatgatgctaaaatgatagcc 2160 Query: 2161 gacttggaagcaacattcgttggtgaacttaaataaaaataaaaactagtttggtgtgc 2219 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2161 gacttggaagcaacattcgttggtgaacttaaataaaaataaaaactagtttggtgtgc 2219 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 47,043 Number of Sequences: 18737 Number of extensions: 47043 Number of successful extensions: 1108 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1104 Number of HSP's gapped (non-prelim): 1 length of query: 2237 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2219 effective length of database: 40,933,732 effective search space: 90831951308 effective search space used: 90831951308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119220 AY119220|AY119220 Drosophila melanogaster SD16627 full insert cDNA. (2981 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10737-RC feature: mRNA loc=2R:join(14233976..14234126,14234338... 4855 0.0 CG10737-RD feature: mRNA loc=2R:join(14227867..14227895,14234338... 4555 0.0 CG10737-RB feature: mRNA loc=2R:join(14227867..14227895,14228884... 4236 0.0 CG10737-RA feature: mRNA loc=2R:join(14227867..14227895,14228884... 4236 0.0 >CG10737-RC feature: mRNA loc=2R:join(14233976..14234126,14234338..14234881, 14234973..14235095,14235899..14236000,14236065..14236244, 14236432..14236608,14237152..14237363,14237424..14237841, 14238059..14238085,14238297..14238503,14238602..14239028, 14239908..14240067,14240136..14240243,14240308..14240463, 14240661..14240804);ID=FBan0010737;gene_id=FBgn0034420;ge ne_sym=CG10737;sym=CG10737;scaffold=AE003797;len=3136 Length = 3136 Score = 4855 bits (2449), Expect = 0.0 Identities = 2494/2509 (99%) Strand = Plus / Minus Query: 221 ccattgagggttccggtggctgttcgagggaatccggtggctgttgttgtattcgagttg 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2509 ccattgagggttccggtggctgttcgagggaatccggtggctgttgttgtattcgagttg 2450 Query: 281 gtggctgatagtgacttatgactgttattattaggttgatcggccgagagggtgcgtgtc 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2449 gtggctgatagtgacttatgactgttattattaggttgatcggccgagagggtgcgtgtc 2390 Query: 341 ttggagcggctgagccgcttcttcagggtgccaaagaaattacgttttttgctgcgcccg 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2389 ttggagcggctgagccgcttcttcagggtgccaaagaaattacgttttttgctgcgcccg 2330 Query: 401 cgatcatcgaccacgtcatggccctccaataatccggattgctgagccagctgctgggca 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2329 cgatcatcgaccacgtcatggccctccaataatccggattgctgagccagctgctgggca 2270 Query: 461 ccaccgtttcgtggcagactgttatatccgcccgaaccggcgccattcgagttaccattg 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2269 ccaccgtttcgtggcagactgttatatccgcccgaaccggcgccattcgagttaccattg 2210 Query: 521 ccattgaggctgtagttgttgtggtaactactgccattgggcgatgaggcggcattgggc 580 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2209 ccattgaggctatagttgttgtggtaactactgccattgggcgatgaggcggcattgggc 2150 Query: 581 tggccaaactcagcggtgctttcctcgttgacggtgccattacctgaatcgatgagaggc 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2149 tggccaaactcagcggtgctttcctcgttgacggtgccattacctgaatcgatgagaggc 2090 Query: 641 tcacccagctggctggacttctcctccttgcccagctctagctcaagttcggtttgtgcc 700 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 2089 tcacccagctggctggacttctcctccttggccagctccagctcaagttcggtttgtgcc 2030 Query: 701 tcattggcggcacgttcgaatgcctgagccactgcctgatccaattccgtcgccgtatcg 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2029 tcattggcggcacgttcgaatgcctgagccactgcctgatccaattccgtcgccgtatcg 1970 Query: 761 gtcacctcgatttggccatctctattcaactcgaccttaaatgcattcgggctgcttgaa 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1969 gtcacctcgatttggccatctctattcaactcgaccttaaatgcattcgggctgcttgaa 1910 Query: 821 ttccgctgcacactgtggatgatcaaagtgctcttgctgggttgtccgccacttccgctg 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1909 ttccgctgcacactgtggatgatcaaagtgctcttgctgggttgtccgccacttccgctg 1850 Query: 881 ctcgagagcgctccatcctgcagagctcttacggctgcatccgctagatctgctccattt 940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1849 ctcgagagcgctccatcctgcagagctcttacggctgcatccgctagatctgctccattt 1790 Query: 941 cggatgtgttcgttaatggccggtgtgctgagacgcagtgcctccttgagacgctgtgga 1000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1789 cggatgtgttcgttaatggccggtgtgctgagacgcagtgcctccttgagacgctgtgga 1730 Query: 1001 cgtgcgcccgccgggatttcggcaccctcaatgaacacaaagtccacggtgatggctccc 1060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1729 cgtgcgcccgccgggatttcggcaccctcaatgaacacaaagtccacggtgatggctccc 1670 Query: 1061 gaaacgggctgcgtctcataggggcgtggttgcagctgcaacagttgagtggatgcgggt 1120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1669 gaaacgggctgcgtctcataggggcgtggttgcagctgcaacagttgagtggatgcgggt 1610 Query: 1121 ccaacggccagctcatcgattccaaccaggccgagacccaggaacttgggcggatctgag 1180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1609 ccaacggccagctcatcgattccaaccaggccgagacccagaaacttgggcggatctgag 1550 Query: 1181 gcaatcaccggatggtcatacacctcgaacaggatctcagctgattgaggggagagttca 1240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1549 gcaatcaccggatggtcatacacctcgaacaggatctcagctgattgaggggagagttca 1490 Query: 1241 aagaggaagtgctcatcccagaagggtttgccgccgcgctgagtgcccgtctggttcttt 1300 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 1489 aagaggaagtgctcatcccagaagggtttgccgccgcgctgagtacccgtctgattcttc 1430 Query: 1301 tgggccggctcgtccatctcgatgaccacgtagggattctgggcatcccttattccatcg 1360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1429 tgggccggctcgtccatctcgatgaccacgtagggattctgggcatcccttattccatcg 1370 Query: 1361 cccttgacgatcttcaccagcagccgacggccggaaaccatgtgttgcgaatccctcaat 1420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1369 cccttgacgatcttcaccagcagccgacggccggaaaccatgtgttgcgaatccctcaat 1310 Query: 1421 cccacgccacccatgtgctgctccatgttgtggggcaggtccaggggctccacctcggcc 1480 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1309 cccacgccacccatgtgctgctccatgttgtggggcaggtccaggggctccacttcggcc 1250 Query: 1481 ctcggacaggtggagtaaatggagaagtccaccggatagatggtgtcgcgcaaagccgtc 1540 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1249 cttggacaggtggagtaaatggagaagtccaccggatagatggtgtcgcgcaaagccgtc 1190 Query: 1541 gtcaggatgtcgctgatcaccgtctgcaattgctgttcatcctgatccattgccttgata 1600 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1189 gtcaggatgtcgctgatcaccgtctgcaattgctgttcatcctgatccattgccttgatg 1130 Query: 1601 gcacccacgctgttcatcgcgatgcgaacatccggatagccctcgactcgcatctcaccc 1660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1129 gcacccacgctgttcatcgcgatgcgaacatccggatagccctcgactcgcatctcaccc 1070 Query: 1661 ttgaggctgttgtagttcatgggaatggccatacgggcgcggaacctagacacggtgacc 1720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1069 ttgaggctgttgtagttcatgggaatggccatacgggcgcggaacctagacacggtgacc 1010 Query: 1721 ttgtagtgggaggtctccaccttgcccgacttttggcggaaggtcttcacctgcagcacc 1780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1009 ttgtagtgggaggtctccaccttgcccgacttttggcggaaggtcttcacctgcaacacc 950 Query: 1781 ggcattgcatcgcagtcaaaggtgatgagcatatcagcgggattgttttcatcgcaatta 1840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 949 ggcattgcatcgcagtcaaaggtgatgagcatatcagcgggattgttttcatcgcaatta 890 Query: 1841 caaaatatattatttaatccgggggcaggactgtcgggtagcactcgaaccacttcaacg 1900 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 889 caaaatatattattcaatccgggggcaggactgtcgggtagcactcgaaccacttcaacg 830 Query: 1901 gccactccatgctcctccacagacttgcgcagcgtgtcgttgatggcgattacccaggac 1960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 829 gccactccatgctcctccacagacttgcgcagcgtgtcgttgatggcgattacccaggac 770 Query: 1961 atgagcagctcgttgacgatgaccaggtcgctataaagccagcgaaacacttggctggtc 2020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 769 atgagcagctcgttgacgatgaccaggtcgctataaagccagcgaaacacttggctggtc 710 Query: 2021 caggtgacggagctcgtttctggacccacgacattcgatggcggtgggacatagcgcttc 2080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 caggtgacggagctcgtttctggacccacgacattcgatggcggtgggacatagcgcttc 650 Query: 2081 ttgcgattctctggcccagtggaactctgacgcaccacccgacgacgtggaccgccggca 2140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 ttgcgattctctggcccagtggaactctgacgcaccacccgacgacgtggaccgccggca 590 Query: 2141 gctgcaccagcggtattcaatggcgatgctgatgaacgtcctcgaccaccggatgcgccg 2200 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 589 gctgcaccagcggtattcaatggcgatgctgatgaacgtcctcggccaccggatgcgccg 530 Query: 2201 gccagaggcttggataagtccaagccttcaaccttgctcttggtggccaggagatcgcgc 2260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 gccagaggcttggataagtccaagccttcaaccttgctcttggtggccaggagatcgcgc 470 Query: 2261 ggctccgagagacgtttctccgtcttgccggcgacggacgtgggtgatccggatgtgggc 2320 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 ggctccgagagacgtttctccgtcttgccggcgacggacgtgggtgatccggatgtgggg 410 Query: 2321 gccacgctcgtctggcgactgttggccgcactggccgacttgtccttgttgagatacttg 2380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 gccacgctcgtctggcgactgttggccgcactggccgacttgtccttgttgagatacttg 350 Query: 2381 tggtagagcagcttgattagccacacggagaagagggccagaacggcccacaggaaaatg 2440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tggtagagcagcttgattagccacacggagaagagggccagaacggcccacaggaaaatg 290 Query: 2441 aagatggccagggagtccattgttaagtcaccaagtccctcgaacgaacagatatagtca 2500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 aagatggccagggagtccattgttaagtcaccaagtccctcgaacgaacagatatagtca 230 Query: 2501 tcgatttgatctgctagatccatcgttcagttccaggccgagttaatcccacagatcgtc 2560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 tcgatttgatctgctagatccatcgttcagttccaggccgagttaatcccacagatcgtc 170 Query: 2561 gtcatcgtcgttatcgttaaaagcacaaaatccacaggaagttaagaaataataatcgtt 2620 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 gtcatcgtcattatcgttaaaagcacaaaatccacaggaagttaagaaataataatcgtt 110 Query: 2621 taaatatttccaactttaattgtttatattggttaaaatatgtatttgctttaaacaaat 2680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109 taaatatttccaactttaattgtttatattggttaaaatatgtatttgctttaaacaaat 50 Query: 2681 aatgcaattgaaaaagaaaaatcgaaatatttgataaacgggaactaaa 2729 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49 aatgcaattgaaaaagaaaaatcgaaatatttgataaacgggaactaaa 1 Score = 434 bits (219), Expect = e-120 Identities = 222/223 (99%) Strand = Plus / Minus Query: 1 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2789 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 2730 Query: 61 tcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2729 gcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 2670 Query: 121 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2669 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 2610 Query: 181 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtcca 223 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2609 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtcca 2567 >CG10737-RD feature: mRNA loc=2R:join(14227867..14227895,14234338..14234881, 14234973..14235095,14235899..14236000,14236065..14236244, 14236432..14236608,14237152..14237363,14237424..14237841, 14238059..14238085,14238297..14238503,14238602..14239028, 14239908..14240067,14240136..14240243,14240308..14240463, 14240661..14240804);ID=FBan0010737;gene_id=FBgn0034420;ge ne_sym=CG10737;sym=CG10737;scaffold=AE003797;len=3014 Length = 3014 Score = 4555 bits (2298), Expect = 0.0 Identities = 2343/2358 (99%) Strand = Plus / Minus Query: 221 ccattgagggttccggtggctgttcgagggaatccggtggctgttgttgtattcgagttg 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2387 ccattgagggttccggtggctgttcgagggaatccggtggctgttgttgtattcgagttg 2328 Query: 281 gtggctgatagtgacttatgactgttattattaggttgatcggccgagagggtgcgtgtc 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2327 gtggctgatagtgacttatgactgttattattaggttgatcggccgagagggtgcgtgtc 2268 Query: 341 ttggagcggctgagccgcttcttcagggtgccaaagaaattacgttttttgctgcgcccg 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2267 ttggagcggctgagccgcttcttcagggtgccaaagaaattacgttttttgctgcgcccg 2208 Query: 401 cgatcatcgaccacgtcatggccctccaataatccggattgctgagccagctgctgggca 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2207 cgatcatcgaccacgtcatggccctccaataatccggattgctgagccagctgctgggca 2148 Query: 461 ccaccgtttcgtggcagactgttatatccgcccgaaccggcgccattcgagttaccattg 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2147 ccaccgtttcgtggcagactgttatatccgcccgaaccggcgccattcgagttaccattg 2088 Query: 521 ccattgaggctgtagttgttgtggtaactactgccattgggcgatgaggcggcattgggc 580 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2087 ccattgaggctatagttgttgtggtaactactgccattgggcgatgaggcggcattgggc 2028 Query: 581 tggccaaactcagcggtgctttcctcgttgacggtgccattacctgaatcgatgagaggc 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2027 tggccaaactcagcggtgctttcctcgttgacggtgccattacctgaatcgatgagaggc 1968 Query: 641 tcacccagctggctggacttctcctccttgcccagctctagctcaagttcggtttgtgcc 700 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 1967 tcacccagctggctggacttctcctccttggccagctccagctcaagttcggtttgtgcc 1908 Query: 701 tcattggcggcacgttcgaatgcctgagccactgcctgatccaattccgtcgccgtatcg 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1907 tcattggcggcacgttcgaatgcctgagccactgcctgatccaattccgtcgccgtatcg 1848 Query: 761 gtcacctcgatttggccatctctattcaactcgaccttaaatgcattcgggctgcttgaa 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1847 gtcacctcgatttggccatctctattcaactcgaccttaaatgcattcgggctgcttgaa 1788 Query: 821 ttccgctgcacactgtggatgatcaaagtgctcttgctgggttgtccgccacttccgctg 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1787 ttccgctgcacactgtggatgatcaaagtgctcttgctgggttgtccgccacttccgctg 1728 Query: 881 ctcgagagcgctccatcctgcagagctcttacggctgcatccgctagatctgctccattt 940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1727 ctcgagagcgctccatcctgcagagctcttacggctgcatccgctagatctgctccattt 1668 Query: 941 cggatgtgttcgttaatggccggtgtgctgagacgcagtgcctccttgagacgctgtgga 1000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1667 cggatgtgttcgttaatggccggtgtgctgagacgcagtgcctccttgagacgctgtgga 1608 Query: 1001 cgtgcgcccgccgggatttcggcaccctcaatgaacacaaagtccacggtgatggctccc 1060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1607 cgtgcgcccgccgggatttcggcaccctcaatgaacacaaagtccacggtgatggctccc 1548 Query: 1061 gaaacgggctgcgtctcataggggcgtggttgcagctgcaacagttgagtggatgcgggt 1120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1547 gaaacgggctgcgtctcataggggcgtggttgcagctgcaacagttgagtggatgcgggt 1488 Query: 1121 ccaacggccagctcatcgattccaaccaggccgagacccaggaacttgggcggatctgag 1180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1487 ccaacggccagctcatcgattccaaccaggccgagacccagaaacttgggcggatctgag 1428 Query: 1181 gcaatcaccggatggtcatacacctcgaacaggatctcagctgattgaggggagagttca 1240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1427 gcaatcaccggatggtcatacacctcgaacaggatctcagctgattgaggggagagttca 1368 Query: 1241 aagaggaagtgctcatcccagaagggtttgccgccgcgctgagtgcccgtctggttcttt 1300 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 1367 aagaggaagtgctcatcccagaagggtttgccgccgcgctgagtacccgtctgattcttc 1308 Query: 1301 tgggccggctcgtccatctcgatgaccacgtagggattctgggcatcccttattccatcg 1360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1307 tgggccggctcgtccatctcgatgaccacgtagggattctgggcatcccttattccatcg 1248 Query: 1361 cccttgacgatcttcaccagcagccgacggccggaaaccatgtgttgcgaatccctcaat 1420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1247 cccttgacgatcttcaccagcagccgacggccggaaaccatgtgttgcgaatccctcaat 1188 Query: 1421 cccacgccacccatgtgctgctccatgttgtggggcaggtccaggggctccacctcggcc 1480 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1187 cccacgccacccatgtgctgctccatgttgtggggcaggtccaggggctccacttcggcc 1128 Query: 1481 ctcggacaggtggagtaaatggagaagtccaccggatagatggtgtcgcgcaaagccgtc 1540 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1127 cttggacaggtggagtaaatggagaagtccaccggatagatggtgtcgcgcaaagccgtc 1068 Query: 1541 gtcaggatgtcgctgatcaccgtctgcaattgctgttcatcctgatccattgccttgata 1600 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 gtcaggatgtcgctgatcaccgtctgcaattgctgttcatcctgatccattgccttgatg 1008 Query: 1601 gcacccacgctgttcatcgcgatgcgaacatccggatagccctcgactcgcatctcaccc 1660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 gcacccacgctgttcatcgcgatgcgaacatccggatagccctcgactcgcatctcaccc 948 Query: 1661 ttgaggctgttgtagttcatgggaatggccatacgggcgcggaacctagacacggtgacc 1720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 947 ttgaggctgttgtagttcatgggaatggccatacgggcgcggaacctagacacggtgacc 888 Query: 1721 ttgtagtgggaggtctccaccttgcccgacttttggcggaaggtcttcacctgcagcacc 1780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 887 ttgtagtgggaggtctccaccttgcccgacttttggcggaaggtcttcacctgcaacacc 828 Query: 1781 ggcattgcatcgcagtcaaaggtgatgagcatatcagcgggattgttttcatcgcaatta 1840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 827 ggcattgcatcgcagtcaaaggtgatgagcatatcagcgggattgttttcatcgcaatta 768 Query: 1841 caaaatatattatttaatccgggggcaggactgtcgggtagcactcgaaccacttcaacg 1900 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 767 caaaatatattattcaatccgggggcaggactgtcgggtagcactcgaaccacttcaacg 708 Query: 1901 gccactccatgctcctccacagacttgcgcagcgtgtcgttgatggcgattacccaggac 1960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 707 gccactccatgctcctccacagacttgcgcagcgtgtcgttgatggcgattacccaggac 648 Query: 1961 atgagcagctcgttgacgatgaccaggtcgctataaagccagcgaaacacttggctggtc 2020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 647 atgagcagctcgttgacgatgaccaggtcgctataaagccagcgaaacacttggctggtc 588 Query: 2021 caggtgacggagctcgtttctggacccacgacattcgatggcggtgggacatagcgcttc 2080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 587 caggtgacggagctcgtttctggacccacgacattcgatggcggtgggacatagcgcttc 528 Query: 2081 ttgcgattctctggcccagtggaactctgacgcaccacccgacgacgtggaccgccggca 2140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 527 ttgcgattctctggcccagtggaactctgacgcaccacccgacgacgtggaccgccggca 468 Query: 2141 gctgcaccagcggtattcaatggcgatgctgatgaacgtcctcgaccaccggatgcgccg 2200 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 467 gctgcaccagcggtattcaatggcgatgctgatgaacgtcctcggccaccggatgcgccg 408 Query: 2201 gccagaggcttggataagtccaagccttcaaccttgctcttggtggccaggagatcgcgc 2260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 407 gccagaggcttggataagtccaagccttcaaccttgctcttggtggccaggagatcgcgc 348 Query: 2261 ggctccgagagacgtttctccgtcttgccggcgacggacgtgggtgatccggatgtgggc 2320 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 ggctccgagagacgtttctccgtcttgccggcgacggacgtgggtgatccggatgtgggg 288 Query: 2321 gccacgctcgtctggcgactgttggccgcactggccgacttgtccttgttgagatacttg 2380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 gccacgctcgtctggcgactgttggccgcactggccgacttgtccttgttgagatacttg 228 Query: 2381 tggtagagcagcttgattagccacacggagaagagggccagaacggcccacaggaaaatg 2440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 tggtagagcagcttgattagccacacggagaagagggccagaacggcccacaggaaaatg 168 Query: 2441 aagatggccagggagtccattgttaagtcaccaagtccctcgaacgaacagatatagtca 2500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 167 aagatggccagggagtccattgttaagtcaccaagtccctcgaacgaacagatatagtca 108 Query: 2501 tcgatttgatctgctagatccatcgttcagttccaggccgagttaatcccacagatcgtc 2560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107 tcgatttgatctgctagatccatcgttcagttccaggccgagttaatcccacagatcgtc 48 Query: 2561 gtcatcgtcgttatcgtt 2578 ||||||||| |||||||| Sbjct: 47 gtcatcgtcattatcgtt 30 Score = 434 bits (219), Expect = e-120 Identities = 222/223 (99%) Strand = Plus / Minus Query: 1 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2667 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 2608 Query: 61 tcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2607 gcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 2548 Query: 121 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2547 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 2488 Query: 181 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtcca 223 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2487 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtcca 2445 >CG10737-RB feature: mRNA loc=2R:join(14227867..14227895,14228884..14229248, 14234338..14234881,14234973..14235095,14235899..14236000, 14236065..14236244,14236432..14236608,14237152..14237363, 14237424..14237841,14238059..14238085,14238297..14238503, 14238602..14238806,14239908..14240067,14240136..14240243, 14240308..14240463, 14241539..14241943);ID=FBan0010737;gene_id=FBgn0034420;ge ne_sym=CG10737;sym=CG10737;scaffold=AE003797;len=3418 Length = 3418 Score = 4236 bits (2137), Expect = 0.0 Identities = 2182/2197 (99%) Strand = Plus / Minus Query: 383 cgttttttgctgcgcccgcgatcatcgaccacgtcatggccctccaataatccggattgc 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2590 cgttttttgctgcgcccgcgatcatcgaccacgtcatggccctccaataatccggattgc 2531 Query: 443 tgagccagctgctgggcaccaccgtttcgtggcagactgttatatccgcccgaaccggcg 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 tgagccagctgctgggcaccaccgtttcgtggcagactgttatatccgcccgaaccggcg 2471 Query: 503 ccattcgagttaccattgccattgaggctgtagttgttgtggtaactactgccattgggc 562 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2470 ccattcgagttaccattgccattgaggctatagttgttgtggtaactactgccattgggc 2411 Query: 563 gatgaggcggcattgggctggccaaactcagcggtgctttcctcgttgacggtgccatta 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 gatgaggcggcattgggctggccaaactcagcggtgctttcctcgttgacggtgccatta 2351 Query: 623 cctgaatcgatgagaggctcacccagctggctggacttctcctccttgcccagctctagc 682 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct: 2350 cctgaatcgatgagaggctcacccagctggctggacttctcctccttggccagctccagc 2291 Query: 683 tcaagttcggtttgtgcctcattggcggcacgttcgaatgcctgagccactgcctgatcc 742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2290 tcaagttcggtttgtgcctcattggcggcacgttcgaatgcctgagccactgcctgatcc 2231 Query: 743 aattccgtcgccgtatcggtcacctcgatttggccatctctattcaactcgaccttaaat 802 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2230 aattccgtcgccgtatcggtcacctcgatttggccatctctattcaactcgaccttaaat 2171 Query: 803 gcattcgggctgcttgaattccgctgcacactgtggatgatcaaagtgctcttgctgggt 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2170 gcattcgggctgcttgaattccgctgcacactgtggatgatcaaagtgctcttgctgggt 2111 Query: 863 tgtccgccacttccgctgctcgagagcgctccatcctgcagagctcttacggctgcatcc 922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2110 tgtccgccacttccgctgctcgagagcgctccatcctgcagagctcttacggctgcatcc 2051 Query: 923 gctagatctgctccatttcggatgtgttcgttaatggccggtgtgctgagacgcagtgcc 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2050 gctagatctgctccatttcggatgtgttcgttaatggccggtgtgctgagacgcagtgcc 1991 Query: 983 tccttgagacgctgtggacgtgcgcccgccgggatttcggcaccctcaatgaacacaaag 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1990 tccttgagacgctgtggacgtgcgcccgccgggatttcggcaccctcaatgaacacaaag 1931 Query: 1043 tccacggtgatggctcccgaaacgggctgcgtctcataggggcgtggttgcagctgcaac 1102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1930 tccacggtgatggctcccgaaacgggctgcgtctcataggggcgtggttgcagctgcaac 1871 Query: 1103 agttgagtggatgcgggtccaacggccagctcatcgattccaaccaggccgagacccagg 1162 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1870 agttgagtggatgcgggtccaacggccagctcatcgattccaaccaggccgagacccaga 1811 Query: 1163 aacttgggcggatctgaggcaatcaccggatggtcatacacctcgaacaggatctcagct 1222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1810 aacttgggcggatctgaggcaatcaccggatggtcatacacctcgaacaggatctcagct 1751 Query: 1223 gattgaggggagagttcaaagaggaagtgctcatcccagaagggtttgccgccgcgctga 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1750 gattgaggggagagttcaaagaggaagtgctcatcccagaagggtttgccgccgcgctga 1691 Query: 1283 gtgcccgtctggttcttttgggccggctcgtccatctcgatgaccacgtagggattctgg 1342 || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1690 gtacccgtctgattcttctgggccggctcgtccatctcgatgaccacgtagggattctgg 1631 Query: 1343 gcatcccttattccatcgcccttgacgatcttcaccagcagccgacggccggaaaccatg 1402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1630 gcatcccttattccatcgcccttgacgatcttcaccagcagccgacggccggaaaccatg 1571 Query: 1403 tgttgcgaatccctcaatcccacgccacccatgtgctgctccatgttgtggggcaggtcc 1462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1570 tgttgcgaatccctcaatcccacgccacccatgtgctgctccatgttgtggggcaggtcc 1511 Query: 1463 aggggctccacctcggccctcggacaggtggagtaaatggagaagtccaccggatagatg 1522 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1510 aggggctccacttcggcccttggacaggtggagtaaatggagaagtccaccggatagatg 1451 Query: 1523 gtgtcgcgcaaagccgtcgtcaggatgtcgctgatcaccgtctgcaattgctgttcatcc 1582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1450 gtgtcgcgcaaagccgtcgtcaggatgtcgctgatcaccgtctgcaattgctgttcatcc 1391 Query: 1583 tgatccattgccttgatagcacccacgctgttcatcgcgatgcgaacatccggatagccc 1642 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1390 tgatccattgccttgatggcacccacgctgttcatcgcgatgcgaacatccggatagccc 1331 Query: 1643 tcgactcgcatctcacccttgaggctgttgtagttcatgggaatggccatacgggcgcgg 1702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1330 tcgactcgcatctcacccttgaggctgttgtagttcatgggaatggccatacgggcgcgg 1271 Query: 1703 aacctagacacggtgaccttgtagtgggaggtctccaccttgcccgacttttggcggaag 1762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1270 aacctagacacggtgaccttgtagtgggaggtctccaccttgcccgacttttggcggaag 1211 Query: 1763 gtcttcacctgcagcaccggcattgcatcgcagtcaaaggtgatgagcatatcagcggga 1822 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1210 gtcttcacctgcaacaccggcattgcatcgcagtcaaaggtgatgagcatatcagcggga 1151 Query: 1823 ttgttttcatcgcaattacaaaatatattatttaatccgggggcaggactgtcgggtagc 1882 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1150 ttgttttcatcgcaattacaaaatatattattcaatccgggggcaggactgtcgggtagc 1091 Query: 1883 actcgaaccacttcaacggccactccatgctcctccacagacttgcgcagcgtgtcgttg 1942 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1090 actcgaaccacttcaacggccactccatgctcctccacagacttgcgcagcgtgtcgttg 1031 Query: 1943 atggcgattacccaggacatgagcagctcgttgacgatgaccaggtcgctataaagccag 2002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1030 atggcgattacccaggacatgagcagctcgttgacgatgaccaggtcgctataaagccag 971 Query: 2003 cgaaacacttggctggtccaggtgacggagctcgtttctggacccacgacattcgatggc 2062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 970 cgaaacacttggctggtccaggtgacggagctcgtttctggacccacgacattcgatggc 911 Query: 2063 ggtgggacatagcgcttcttgcgattctctggcccagtggaactctgacgcaccacccga 2122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 910 ggtgggacatagcgcttcttgcgattctctggcccagtggaactctgacgcaccacccga 851 Query: 2123 cgacgtggaccgccggcagctgcaccagcggtattcaatggcgatgctgatgaacgtcct 2182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 850 cgacgtggaccgccggcagctgcaccagcggtattcaatggcgatgctgatgaacgtcct 791 Query: 2183 cgaccaccggatgcgccggccagaggcttggataagtccaagccttcaaccttgctcttg 2242 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 790 cggccaccggatgcgccggccagaggcttggataagtccaagccttcaaccttgctcttg 731 Query: 2243 gtggccaggagatcgcgcggctccgagagacgtttctccgtcttgccggcgacggacgtg 2302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 730 gtggccaggagatcgcgcggctccgagagacgtttctccgtcttgccggcgacggacgtg 671 Query: 2303 ggtgatccggatgtgggcgccacgctcgtctggcgactgttggccgcactggccgacttg 2362 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 ggtgatccggatgtgggggccacgctcgtctggcgactgttggccgcactggccgacttg 611 Query: 2363 tccttgttgagatacttgtggtagagcagcttgattagccacacggagaagagggccaga 2422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 610 tccttgttgagatacttgtggtagagcagcttgattagccacacggagaagagggccaga 551 Query: 2423 acggcccacaggaaaatgaagatggccagggagtccattgttaagtcaccaagtccctcg 2482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 acggcccacaggaaaatgaagatggccagggagtccattgttaagtcaccaagtccctcg 491 Query: 2483 aacgaacagatatagtcatcgatttgatctgctagatccatcgttcagttccaggccgag 2542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 aacgaacagatatagtcatcgatttgatctgctagatccatcgttcagttccaggccgag 431 Query: 2543 ttaatcccacagatcgtcgtcatcgtcgttatcgtta 2579 ||||||||||||||||||||||||||| ||||||||| Sbjct: 430 ttaatcccacagatcgtcgtcatcgtcattatcgtta 394 Score = 430 bits (217), Expect = e-119 Identities = 220/221 (99%) Strand = Plus / Minus Query: 1 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2810 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 2751 Query: 61 tcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2750 gcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 2691 Query: 121 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2690 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 2631 Query: 181 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtc 221 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2630 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtc 2590 >CG10737-RA feature: mRNA loc=2R:join(14227867..14227895,14228884..14229248, 14234338..14234881,14234973..14235095,14235899..14236000, 14236065..14236244,14236432..14236608,14237152..14237363, 14237424..14237841,14238059..14238085,14238297..14238503, 14238602..14238806,14239908..14240067,14240136..14240243, 14240308..14240463, 14240661..14240804);ID=FBan0010737;gene_id=FBgn0034420;ge ne_sym=CG10737;sym=CG10737;scaffold=AE003797;len=3157 Length = 3157 Score = 4236 bits (2137), Expect = 0.0 Identities = 2182/2197 (99%) Strand = Plus / Minus Query: 383 cgttttttgctgcgcccgcgatcatcgaccacgtcatggccctccaataatccggattgc 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2590 cgttttttgctgcgcccgcgatcatcgaccacgtcatggccctccaataatccggattgc 2531 Query: 443 tgagccagctgctgggcaccaccgtttcgtggcagactgttatatccgcccgaaccggcg 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 tgagccagctgctgggcaccaccgtttcgtggcagactgttatatccgcccgaaccggcg 2471 Query: 503 ccattcgagttaccattgccattgaggctgtagttgttgtggtaactactgccattgggc 562 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2470 ccattcgagttaccattgccattgaggctatagttgttgtggtaactactgccattgggc 2411 Query: 563 gatgaggcggcattgggctggccaaactcagcggtgctttcctcgttgacggtgccatta 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 gatgaggcggcattgggctggccaaactcagcggtgctttcctcgttgacggtgccatta 2351 Query: 623 cctgaatcgatgagaggctcacccagctggctggacttctcctccttgcccagctctagc 682 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct: 2350 cctgaatcgatgagaggctcacccagctggctggacttctcctccttggccagctccagc 2291 Query: 683 tcaagttcggtttgtgcctcattggcggcacgttcgaatgcctgagccactgcctgatcc 742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2290 tcaagttcggtttgtgcctcattggcggcacgttcgaatgcctgagccactgcctgatcc 2231 Query: 743 aattccgtcgccgtatcggtcacctcgatttggccatctctattcaactcgaccttaaat 802 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2230 aattccgtcgccgtatcggtcacctcgatttggccatctctattcaactcgaccttaaat 2171 Query: 803 gcattcgggctgcttgaattccgctgcacactgtggatgatcaaagtgctcttgctgggt 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2170 gcattcgggctgcttgaattccgctgcacactgtggatgatcaaagtgctcttgctgggt 2111 Query: 863 tgtccgccacttccgctgctcgagagcgctccatcctgcagagctcttacggctgcatcc 922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2110 tgtccgccacttccgctgctcgagagcgctccatcctgcagagctcttacggctgcatcc 2051 Query: 923 gctagatctgctccatttcggatgtgttcgttaatggccggtgtgctgagacgcagtgcc 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2050 gctagatctgctccatttcggatgtgttcgttaatggccggtgtgctgagacgcagtgcc 1991 Query: 983 tccttgagacgctgtggacgtgcgcccgccgggatttcggcaccctcaatgaacacaaag 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1990 tccttgagacgctgtggacgtgcgcccgccgggatttcggcaccctcaatgaacacaaag 1931 Query: 1043 tccacggtgatggctcccgaaacgggctgcgtctcataggggcgtggttgcagctgcaac 1102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1930 tccacggtgatggctcccgaaacgggctgcgtctcataggggcgtggttgcagctgcaac 1871 Query: 1103 agttgagtggatgcgggtccaacggccagctcatcgattccaaccaggccgagacccagg 1162 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1870 agttgagtggatgcgggtccaacggccagctcatcgattccaaccaggccgagacccaga 1811 Query: 1163 aacttgggcggatctgaggcaatcaccggatggtcatacacctcgaacaggatctcagct 1222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1810 aacttgggcggatctgaggcaatcaccggatggtcatacacctcgaacaggatctcagct 1751 Query: 1223 gattgaggggagagttcaaagaggaagtgctcatcccagaagggtttgccgccgcgctga 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1750 gattgaggggagagttcaaagaggaagtgctcatcccagaagggtttgccgccgcgctga 1691 Query: 1283 gtgcccgtctggttcttttgggccggctcgtccatctcgatgaccacgtagggattctgg 1342 || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1690 gtacccgtctgattcttctgggccggctcgtccatctcgatgaccacgtagggattctgg 1631 Query: 1343 gcatcccttattccatcgcccttgacgatcttcaccagcagccgacggccggaaaccatg 1402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1630 gcatcccttattccatcgcccttgacgatcttcaccagcagccgacggccggaaaccatg 1571 Query: 1403 tgttgcgaatccctcaatcccacgccacccatgtgctgctccatgttgtggggcaggtcc 1462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1570 tgttgcgaatccctcaatcccacgccacccatgtgctgctccatgttgtggggcaggtcc 1511 Query: 1463 aggggctccacctcggccctcggacaggtggagtaaatggagaagtccaccggatagatg 1522 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1510 aggggctccacttcggcccttggacaggtggagtaaatggagaagtccaccggatagatg 1451 Query: 1523 gtgtcgcgcaaagccgtcgtcaggatgtcgctgatcaccgtctgcaattgctgttcatcc 1582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1450 gtgtcgcgcaaagccgtcgtcaggatgtcgctgatcaccgtctgcaattgctgttcatcc 1391 Query: 1583 tgatccattgccttgatagcacccacgctgttcatcgcgatgcgaacatccggatagccc 1642 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1390 tgatccattgccttgatggcacccacgctgttcatcgcgatgcgaacatccggatagccc 1331 Query: 1643 tcgactcgcatctcacccttgaggctgttgtagttcatgggaatggccatacgggcgcgg 1702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1330 tcgactcgcatctcacccttgaggctgttgtagttcatgggaatggccatacgggcgcgg 1271 Query: 1703 aacctagacacggtgaccttgtagtgggaggtctccaccttgcccgacttttggcggaag 1762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1270 aacctagacacggtgaccttgtagtgggaggtctccaccttgcccgacttttggcggaag 1211 Query: 1763 gtcttcacctgcagcaccggcattgcatcgcagtcaaaggtgatgagcatatcagcggga 1822 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1210 gtcttcacctgcaacaccggcattgcatcgcagtcaaaggtgatgagcatatcagcggga 1151 Query: 1823 ttgttttcatcgcaattacaaaatatattatttaatccgggggcaggactgtcgggtagc 1882 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1150 ttgttttcatcgcaattacaaaatatattattcaatccgggggcaggactgtcgggtagc 1091 Query: 1883 actcgaaccacttcaacggccactccatgctcctccacagacttgcgcagcgtgtcgttg 1942 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1090 actcgaaccacttcaacggccactccatgctcctccacagacttgcgcagcgtgtcgttg 1031 Query: 1943 atggcgattacccaggacatgagcagctcgttgacgatgaccaggtcgctataaagccag 2002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1030 atggcgattacccaggacatgagcagctcgttgacgatgaccaggtcgctataaagccag 971 Query: 2003 cgaaacacttggctggtccaggtgacggagctcgtttctggacccacgacattcgatggc 2062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 970 cgaaacacttggctggtccaggtgacggagctcgtttctggacccacgacattcgatggc 911 Query: 2063 ggtgggacatagcgcttcttgcgattctctggcccagtggaactctgacgcaccacccga 2122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 910 ggtgggacatagcgcttcttgcgattctctggcccagtggaactctgacgcaccacccga 851 Query: 2123 cgacgtggaccgccggcagctgcaccagcggtattcaatggcgatgctgatgaacgtcct 2182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 850 cgacgtggaccgccggcagctgcaccagcggtattcaatggcgatgctgatgaacgtcct 791 Query: 2183 cgaccaccggatgcgccggccagaggcttggataagtccaagccttcaaccttgctcttg 2242 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 790 cggccaccggatgcgccggccagaggcttggataagtccaagccttcaaccttgctcttg 731 Query: 2243 gtggccaggagatcgcgcggctccgagagacgtttctccgtcttgccggcgacggacgtg 2302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 730 gtggccaggagatcgcgcggctccgagagacgtttctccgtcttgccggcgacggacgtg 671 Query: 2303 ggtgatccggatgtgggcgccacgctcgtctggcgactgttggccgcactggccgacttg 2362 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 ggtgatccggatgtgggggccacgctcgtctggcgactgttggccgcactggccgacttg 611 Query: 2363 tccttgttgagatacttgtggtagagcagcttgattagccacacggagaagagggccaga 2422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 610 tccttgttgagatacttgtggtagagcagcttgattagccacacggagaagagggccaga 551 Query: 2423 acggcccacaggaaaatgaagatggccagggagtccattgttaagtcaccaagtccctcg 2482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 acggcccacaggaaaatgaagatggccagggagtccattgttaagtcaccaagtccctcg 491 Query: 2483 aacgaacagatatagtcatcgatttgatctgctagatccatcgttcagttccaggccgag 2542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 aacgaacagatatagtcatcgatttgatctgctagatccatcgttcagttccaggccgag 431 Query: 2543 ttaatcccacagatcgtcgtcatcgtcgttatcgtta 2579 ||||||||||||||||||||||||||| ||||||||| Sbjct: 430 ttaatcccacagatcgtcgtcatcgtcattatcgtta 394 Score = 430 bits (217), Expect = e-119 Identities = 220/221 (99%) Strand = Plus / Minus Query: 1 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2810 cttggtgcccttgcgacgccagcgcggtctctgggcgatggccaaaggcacaatgaagtg 2751 Query: 61 tcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2750 gcgctttatgccattctcgatggtctccagcaccagggtggaggcctcgtgcacgtaggt 2691 Query: 121 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2690 tttattgctagccgaggaaaagcctgagatggccgaggattctgaaattgaggagcgacg 2631 Query: 181 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtc 221 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2630 tgagtggtcggtgatggagtgaccaatgcccatgcgtggtc 2590 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 80,508 Number of Sequences: 18737 Number of extensions: 80508 Number of successful extensions: 2278 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2266 Number of HSP's gapped (non-prelim): 12 length of query: 2981 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2962 effective length of database: 40,914,995 effective search space: 121190215190 effective search space used: 121190215190 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119264 AY119264|AY119264 Drosophila melanogaster SD23414 full insert cDNA. (1027 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,372 Number of Sequences: 18737 Number of extensions: 23372 Number of successful extensions: 801 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 801 Number of HSP's gapped (non-prelim): 0 length of query: 1027 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1009 effective length of database: 40,933,732 effective search space: 41302135588 effective search space used: 41302135588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119280 AY119280|AY119280 Drosophila melanogaster SD27140 full insert cDNA. (3874 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 73,586 Number of Sequences: 18737 Number of extensions: 73586 Number of successful extensions: 1365 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1365 Number of HSP's gapped (non-prelim): 0 length of query: 3874 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3855 effective length of database: 40,914,995 effective search space: 157727305725 effective search space used: 157727305725 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119460 AY119460|AY119460 Drosophila melanogaster GH03275 full insert cDNA. (1219 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,755 Number of Sequences: 18737 Number of extensions: 23755 Number of successful extensions: 520 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 520 Number of HSP's gapped (non-prelim): 0 length of query: 1219 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1201 effective length of database: 40,933,732 effective search space: 49161412132 effective search space used: 49161412132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119479 AY119479|AY119479 Drosophila melanogaster GH06385 full insert cDNA. (1190 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,801 Number of Sequences: 18737 Number of extensions: 25801 Number of successful extensions: 1000 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1000 Number of HSP's gapped (non-prelim): 0 length of query: 1190 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1172 effective length of database: 40,933,732 effective search space: 47974333904 effective search space used: 47974333904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119605 AY119605|AY119605 Drosophila melanogaster LD29015 full insert cDNA. (659 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,397 Number of Sequences: 18737 Number of extensions: 12397 Number of successful extensions: 324 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 324 Number of HSP's gapped (non-prelim): 0 length of query: 659 length of database: 41,270,998 effective HSP length: 17 effective length of query: 642 effective length of database: 40,952,469 effective search space: 26291485098 effective search space used: 26291485098 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119648 AY119648|AY119648 Drosophila melanogaster RE45760 full insert cDNA. (758 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4774-RC feature: mRNA loc=3R:complement(21500321..21500587,215... 430 e-120 CG4774-RB feature: mRNA loc=3R:complement(21500321..21500587,215... 430 e-120 CG4774-RA feature: mRNA loc=3R:complement(21500321..21500587,215... 430 e-120 >CG4774-RC feature: mRNA loc=3R:complement(21500321..21500587,21500654..21500789, 21500855..21501070,21501402..21501953, 21502033..21502219);ID=FBan0004774;gene_id=FBgn0039360;g ene_sym=CG4774;sym=CG4774;scaffold=AE003753;len=1358 Length = 1358 Score = 430 bits (217), Expect = e-120 Identities = 217/217 (100%) Strand = Plus / Minus Query: 419 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 955 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 896 Query: 479 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 895 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 836 Query: 539 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 835 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 776 Query: 599 ctgcgaaggccaccgtcgtgcgatctgtccatccaac 635 ||||||||||||||||||||||||||||||||||||| Sbjct: 775 ctgcgaaggccaccgtcgtgcgatctgtccatccaac 739 >CG4774-RB feature: mRNA loc=3R:complement(21500321..21500587,21500654..21500789, 21500855..21501070,21501402..21502101, 21502338..21502457);ID=FBan0004774;gene_id=FBgn0039360;ge ne_sym=CG4774;sym=CG4774;scaffold=AE003753;len=1439 Length = 1439 Score = 430 bits (217), Expect = e-120 Identities = 217/217 (100%) Strand = Plus / Minus Query: 419 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 977 Query: 479 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 917 Query: 539 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 857 Query: 599 ctgcgaaggccaccgtcgtgcgatctgtccatccaac 635 ||||||||||||||||||||||||||||||||||||| Sbjct: 856 ctgcgaaggccaccgtcgtgcgatctgtccatccaac 820 >CG4774-RA feature: mRNA loc=3R:complement(21500321..21500587,21500654..21500789, 21500855..21501070,21501402..21501953, 21502069..21502226);ID=FBan0004774;gene_id=FBgn0039360;g ene_sym=CG4774;sym=CG4774;scaffold=AE003753;len=1329 Length = 1329 Score = 430 bits (217), Expect = e-120 Identities = 217/217 (100%) Strand = Plus / Minus Query: 419 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 926 cggcggtggcagacttatgtagcgtataacaaatccagctcctagaagaaagacatcccg 867 Query: 479 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 866 gaacaccacgatgcccatgagccacatgggcagcaggtccgtgtagcacagcgagatgac 807 Query: 539 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 806 cagcgagcccatcagcaacttatcagccatggggtccaggaaggaaccgaacttgctcgc 747 Query: 599 ctgcgaaggccaccgtcgtgcgatctgtccatccaac 635 ||||||||||||||||||||||||||||||||||||| Sbjct: 746 ctgcgaaggccaccgtcgtgcgatctgtccatccaac 710 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,008 Number of Sequences: 18737 Number of extensions: 18008 Number of successful extensions: 394 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 379 Number of HSP's gapped (non-prelim): 12 length of query: 758 length of database: 41,270,998 effective HSP length: 17 effective length of query: 741 effective length of database: 40,952,469 effective search space: 30345779529 effective search space used: 30345779529 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119655 AY119655|AY119655 Drosophila melanogaster RH68619 full insert cDNA. (1898 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31324-RA feature: mRNA loc=3R:join(21939518..21939744,21944091... 2797 0.0 >CG31324-RA feature: mRNA loc=3R:join(21939518..21939744, 21944091..21945765);ID=FBan0031324;gene_id=FBgn0051324;ge ne_sym=CG31324;sym=CG31324;scaffold=AE003755;len=1902 Length = 1902 Score = 2797 bits (1411), Expect = 0.0 Identities = 1411/1411 (100%) Strand = Plus / Plus Query: 472 gtgtgaatacacgctgccaaataaaagaagactcaagaagatggcgcccaccatatgctc 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4 gtgtgaatacacgctgccaaataaaagaagactcaagaagatggcgcccaccatatgctc 63 Query: 532 ggagaaaaagcagctgcgcgaaacgcggcgacatcatggcgtggccacagccgccatttc 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64 ggagaaaaagcagctgcgcgaaacgcggcgacatcatggcgtggccacagccgccatttc 123 Query: 592 atcagcatccgcaaccgcatccaccgcatcatcgtcctcgtccttgtccgtgggatccac 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 atcagcatccgcaaccgcatccaccgcatcatcgtcctcgtccttgtccgtgggatccac 183 Query: 652 atctgcagctgccgccacacaagctagttcggtgctcaaccatgtggccaaaggttcgat 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 atctgcagctgccgccacacaagctagttcggtgctcaaccatgtggccaaaggttcgat 243 Query: 712 gaactcgatgagccgccgtcgaccggcgcgattacagcgcaggatgcctcacatccttgc 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 gaactcgatgagccgccgtcgaccggcgcgattacagcgcaggatgcctcacatccttgc 303 Query: 772 ccgcgtgtcctccttctccacggacacgagcagcggcgtggaaacggaggtggagatgga 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 ccgcgtgtcctccttctccacggacacgagcagcggcgtggaaacggaggtggagatgga 363 Query: 832 ctccgagcagaggatgcagctggacgacgaccgctactcggatgccaggatccagggact 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 ctccgagcagaggatgcagctggacgacgaccgctactcggatgccaggatccagggact 423 Query: 892 gcagcaacagccacattccagcagcgacaacatcaagacagtattacagccgacgacggc 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 424 gcagcaacagccacattccagcagcgacaacatcaagacagtattacagccgacgacggc 483 Query: 952 tagcggatatagtagcaagcagaaccgatcggccagggccaaaaactgtgatcgagaggt 1011 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 484 tagcggatatagtagcaagcagaaccgatcggccagggccaaaaactgtgatcgagaggt 543 Query: 1012 gccgctccagatagaggacgaccacgatggcgacagtgggtacgagtacagccaggatcc 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 544 gccgctccagatagaggacgaccacgatggcgacagtgggtacgagtacagccaggatcc 603 Query: 1072 cataaaggagcagcacatgtaccaccagaatagcgaaggcctgttgtccattgccatcaa 1131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 604 cataaaggagcagcacatgtaccaccagaatagcgaaggcctgttgtccattgccatcaa 663 Query: 1132 gactatcaagctggtgcagcgcaacaagctgctgcaaaagcgattggcccaactgcagct 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 gactatcaagctggtgcagcgcaacaagctgctgcaaaagcgattggcccaactgcagct 723 Query: 1192 ggagacctcggagttcattgcctcggtgctggccaacccggaaaatcgccaattccgtga 1251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 ggagacctcggagttcattgcctcggtgctggccaacccggaaaatcgccaattccgtga 783 Query: 1252 caaaatgtcgccaaaggcagaggccaaggtcagcaacatgctgctgcgccactaaattga 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 784 caaaatgtcgccaaaggcagaggccaaggtcagcaacatgctgctgcgccactaaattga 843 Query: 1312 tctggaaaagtcaaaacaggccccatttctggacgtgataagagttttatttgaaaacaa 1371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 844 tctggaaaagtcaaaacaggccccatttctggacgtgataagagttttatttgaaaacaa 903 Query: 1372 attttaagtcatagcgaattgtatttgattttttatgtattcgcccagagcatttgtatt 1431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 904 attttaagtcatagcgaattgtatttgattttttatgtattcgcccagagcatttgtatt 963 Query: 1432 ctgtcgcttaaagatttgacgtatttattcgcattgctcggcatgttgcggcaacatttt 1491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 964 ctgtcgcttaaagatttgacgtatttattcgcattgctcggcatgttgcggcaacatttt 1023 Query: 1492 aggcaacatccaagaaatattgccagcttctgggctgagcgtgtaaattacatggaaaat 1551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1024 aggcaacatccaagaaatattgccagcttctgggctgagcgtgtaaattacatggaaaat 1083 Query: 1552 atatgtaaaatccgaatatcatgaatacacgtaatgtattaagttgtaaatgcttcgctg 1611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 atatgtaaaatccgaatatcatgaatacacgtaatgtattaagttgtaaatgcttcgctg 1143 Query: 1612 cctatatttttgaaattccttgttacaatttttggcttttatatgcgatatgcataaaaa 1671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1144 cctatatttttgaaattccttgttacaatttttggcttttatatgcgatatgcataaaaa 1203 Query: 1672 atttttattaatttaatacctttaatttattattaccataatcgaatagattcctttttt 1731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1204 atttttattaatttaatacctttaatttattattaccataatcgaatagattcctttttt 1263 Query: 1732 aaacgtattttcaaatttgtccacaatacatacattatacacgtccagaaatccaaattt 1791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 aaacgtattttcaaatttgtccacaatacatacattatacacgtccagaaatccaaattt 1323 Query: 1792 caatgggcttcgttttgaaaaattcgtactgattaaatatacaaacatattcatcaaggt 1851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 caatgggcttcgttttgaaaaattcgtactgattaaatatacaaacatattcatcaaggt 1383 Query: 1852 ttaatgaagaaatcgctatgctaacatttac 1882 ||||||||||||||||||||||||||||||| Sbjct: 1384 ttaatgaagaaatcgctatgctaacatttac 1414 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 56,188 Number of Sequences: 18737 Number of extensions: 56188 Number of successful extensions: 1634 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1633 Number of HSP's gapped (non-prelim): 1 length of query: 1898 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1880 effective length of database: 40,933,732 effective search space: 76955416160 effective search space used: 76955416160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY119659 AY119659|AY119659 Drosophila melanogaster SD04739 full insert cDNA. (2943 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 63,157 Number of Sequences: 18737 Number of extensions: 63157 Number of successful extensions: 1648 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1648 Number of HSP's gapped (non-prelim): 0 length of query: 2943 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2924 effective length of database: 40,914,995 effective search space: 119635445380 effective search space used: 119635445380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY121619 AY121619|AY121619 Drosophila melanogaster GH05108 full insert cDNA. (1094 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 29,243 Number of Sequences: 18737 Number of extensions: 29243 Number of successful extensions: 902 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 902 Number of HSP's gapped (non-prelim): 0 length of query: 1094 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1076 effective length of database: 40,933,732 effective search space: 44044695632 effective search space used: 44044695632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY121624 AY121624|AY121624 Drosophila melanogaster GH18009 full insert cDNA. (3241 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Ca-alpha1T-RB feature: mRNA loc=X:complement(5847429..5848337,58... 1800 0.0 >Ca-alpha1T-RB feature: mRNA loc=X:complement(5847429..5848337,5848406..5850322, 5852050..5852199,5852304..5852496,5852797..5854160, 5854248..5854409,5854485..5854775,5854978..5855160, 5855793..5855948,5860611..5860725,5863765..5863974, 5864070..5864977,5865133..5865471,5866328..5866351, 5866621..5867233,5868754..5868995,5870940..5871032, 5872180..5872334,5872568..5872689,5878163..5878337, 5878400..5878631,5879982..5880093, 5885641..5885764);ID=FBan0015899;gene_id=FBgn0029846;gene _sym=Ca-alpha1T;sym=CG15899;scaffold=AE003436;len=8789 Length = 8789 Score = 1800 bits (908), Expect = 0.0 Identities = 908/908 (100%) Strand = Plus / Minus Query: 1 cagattcaggtgcgaagtcttgctgaacgcaagttcgatggagctcatccttcgttgccc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5162 cagattcaggtgcgaagtcttgctgaacgcaagttcgatggagctcatccttcgttgccc 5103 Query: 61 ggaccctggacgcagtttgggcggttgatttagattctgatagacctgcgagttgaaaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5102 ggaccctggacgcagtttgggcggttgatttagattctgatagacctgcgagttgaaaat 5043 Query: 121 gcaagccgatgcccgacgactgcccaccggtccgctgcctatactcagtgtattggataa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5042 gcaagccgatgcccgacgactgcccaccggtccgctgcctatactcagtgtattggataa 4983 Query: 181 ccttcgtatggagttttgtggactcaggcgattggtctccttggtgccggaggaggaacc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4982 ccttcgtatggagttttgtggactcaggcgattggtctccttggtgccggaggaggaacc 4923 Query: 241 gctgaccacagcgttgctgtttctcagcaaacagctgttatcgccgccattgttcagctg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4922 gctgaccacagcgttgctgtttctcagcaaacagctgttatcgccgccattgttcagctg 4863 Query: 301 ctgctgttcttcctcctcgtcctgggtccttcgagcctgattatccagcgttcttcgagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4862 ctgctgttcttcctcctcgtcctgggtccttcgagcctgattatccagcgttcttcgagc 4803 Query: 361 cggattgtcgtctgtggccagggccaaagcggaggcacgtcgctttttggagctaccgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4802 cggattgtcgtctgtggccagggccaaagcggaggcacgtcgctttttggagctaccgcg 4743 Query: 421 ccgtaagcgctgcttaaaactcccctgctgaggaggtggagccaatggcaggcgctcgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4742 ccgtaagcgctgcttaaaactcccctgctgaggaggtggagccaatggcaggcgctcgct 4683 Query: 481 ggacgaacttccactggtcgaggctcccgtgttggcattcctgctcattcccgttgcggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4682 ggacgaacttccactggtcgaggctcccgtgttggcattcctgctcattcccgttgcggg 4623 Query: 541 aatctcacctcctggactggagcccacacttacatcgttgagactgtgactctggctctg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4622 aatctcacctcctggactggagcccacacttacatcgttgagactgtgactctggctctg 4563 Query: 601 cgcgtccgctgtggacgagatggtgggcacataaatgggcgtagccgccgccgttgagct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4562 cgcgtccgctgtggacgagatggtgggcacataaatgggcgtagccgccgccgttgagct 4503 Query: 661 ggagctcttcgaaatgtcgtcgatgatcacgctgtgcatgctgctcgaactgccggcggt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4502 ggagctcttcgaaatgtcgtcgatgatcacgctgtgcatgctgctcgaactgccggcggt 4443 Query: 721 gctggggacaccgcctcccatgcccacgcccagctggctggcattgaggatattcagggg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4442 gctggggacaccgcctcccatgcccacgcccagctggctggcattgaggatattcagggg 4383 Query: 781 cttgtgggatagcaccggcgagggcggtatgagatcgatggagggtatgccctcgtccag 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4382 cttgtgggatagcaccggcgagggcggtatgagatcgatggagggtatgccctcgtccag 4323 Query: 841 actccgctgtccgccggtaaagatgttcggcggtcgcaaaagcgacggagagggcggact 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4322 actccgctgtccgccggtaaagatgttcggcggtcgcaaaagcgacggagagggcggact 4263 Query: 901 gggtggct 908 |||||||| Sbjct: 4262 gggtggct 4255 Score = 581 bits (293), Expect = e-164 Identities = 293/293 (100%) Strand = Plus / Minus Query: 1231 ctttttgaggccgccgcgcggcttggcatgctgcgccccctcctccttgccgccgccgcc 1290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4094 ctttttgaggccgccgcgcggcttggcatgctgcgccccctcctccttgccgccgccgcc 4035 Query: 1291 cgcctctctgtcccgctccctgtccctatctctgtctcgctccctatctctgtctctgtc 1350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4034 cgcctctctgtcccgctccctgtccctatctctgtctcgctccctatctctgtctctgtc 3975 Query: 1351 cctgtccctctcccggtcgccaggtgcggaggcgccagaggtgccagaggcggaaggggc 1410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3974 cctgtccctctcccggtcgccaggtgcggaggcgccagaggtgccagaggcggaaggggc 3915 Query: 1411 ggcagacgaggcgggcagctcgttgatctggtaatcgtgggtgggctgcagcaggcgctg 1470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3914 ggcagacgaggcgggcagctcgttgatctggtaatcgtgggtgggctgcagcaggcgctg 3855 Query: 1471 gcggtgcatgttgctcttggcctcgatgatcagctcgacggagtcctgtagct 1523 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3854 gcggtgcatgttgctcttggcctcgatgatcagctcgacggagtcctgtagct 3802 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 86,938 Number of Sequences: 18737 Number of extensions: 86938 Number of successful extensions: 2201 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2194 Number of HSP's gapped (non-prelim): 5 length of query: 3241 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3222 effective length of database: 40,914,995 effective search space: 131828113890 effective search space used: 131828113890 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY121634 AY121634|AY121634 Drosophila melanogaster GM04363 full insert cDNA. (1943 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value unc-13-RC feature: mRNA loc=4:complement(890515..891242,891308..... 442 e-123 unc-13-RB feature: mRNA loc=4:complement(890515..891242,891308..... 442 e-123 unc-13-RA feature: mRNA loc=4:complement(890513..891242,891308..... 442 e-123 >unc-13-RC feature: mRNA loc=4:complement(890515..891242,891308..891434, 891500..891662,891715..891813,892802..893159, 893223..893514,893582..893748,893834..894055, 894791..895072,895131..895298,895702..895827, 895884..896042,896105..896377,896458..896782, 898439..898580,902205..902311,902549..902669, 902731..902950,903155..903229,905348..905479, 917981..922870,922925..923059, 923949..924381);ID=FBan0002999;gene_id=FBgn0025726;gene_s ym=unc-13;sym=CG2999;scaffold=AE003847;len=9744 Length = 9744 Score = 442 bits (223), Expect = e-123 Identities = 223/223 (100%) Strand = Plus / Minus Query: 1672 acgctgcaggcagtccgcattcagaaggtccttacatttttcatgacactttacaccgca 1731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5887 acgctgcaggcagtccgcattcagaaggtccttacatttttcatgacactttacaccgca 5828 Query: 1732 ctcagtgcaacggaccccttgtcgtgctatcccccacaaaagaccctcacactcgtagca 1791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5827 ctcagtgcaacggaccccttgtcgtgctatcccccacaaaagaccctcacactcgtagca 5768 Query: 1792 gtacgttggtgacgtagcagtccataacaaaaaattgtggggcgttgttgaggatatagg 1851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5767 gtacgttggtgacgtagcagtccataacaaaaaattgtggggcgttgttgaggatatagg 5708 Query: 1852 atatatcagggcttgtagagcttttttgtacacgtgcattttc 1894 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5707 atatatcagggcttgtagagcttttttgtacacgtgcattttc 5665 >unc-13-RB feature: mRNA loc=4:complement(890515..891242,891308..891434, 891500..891662,891715..891813,892802..893159, 893223..893514,893582..893748,893834..894055, 894791..895072,895131..895298,895702..895827, 895884..896042,896105..896377,896458..896782, 898439..898580,902205..902311,902549..902669, 902731..902950,903155..903229,905348..905479, 906553..912428,912482..912537, 913093..913141);ID=FBan0002999;gene_id=FBgn0025726;gene_s ym=unc-13;sym=CG2999;scaffold=AE003847;len=10267 Length = 10267 Score = 442 bits (223), Expect = e-123 Identities = 223/223 (100%) Strand = Plus / Minus Query: 1672 acgctgcaggcagtccgcattcagaaggtccttacatttttcatgacactttacaccgca 1731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6410 acgctgcaggcagtccgcattcagaaggtccttacatttttcatgacactttacaccgca 6351 Query: 1732 ctcagtgcaacggaccccttgtcgtgctatcccccacaaaagaccctcacactcgtagca 1791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6350 ctcagtgcaacggaccccttgtcgtgctatcccccacaaaagaccctcacactcgtagca 6291 Query: 1792 gtacgttggtgacgtagcagtccataacaaaaaattgtggggcgttgttgaggatatagg 1851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6290 gtacgttggtgacgtagcagtccataacaaaaaattgtggggcgttgttgaggatatagg 6231 Query: 1852 atatatcagggcttgtagagcttttttgtacacgtgcattttc 1894 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6230 atatatcagggcttgtagagcttttttgtacacgtgcattttc 6188 >unc-13-RA feature: mRNA loc=4:complement(890513..891242,891308..891434, 891500..891662,891715..891813,892802..893159, 893223..893514,893582..893748,893834..894055, 894791..895072,895131..895298,895702..895827, 895884..896042,896105..896377,896458..896782, 898439..898580,901431..901537,902549..902669, 902731..902950,903155..903229,905348..905479, 917981..922870,922925..923059, 923949..924381);ID=FBan0002999;gene_id=FBgn0025726;gene_s ym=unc-13;sym=CG2999;scaffold=AE003847;len=9746 Length = 9746 Score = 442 bits (223), Expect = e-123 Identities = 223/223 (100%) Strand = Plus / Minus Query: 1672 acgctgcaggcagtccgcattcagaaggtccttacatttttcatgacactttacaccgca 1731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5887 acgctgcaggcagtccgcattcagaaggtccttacatttttcatgacactttacaccgca 5828 Query: 1732 ctcagtgcaacggaccccttgtcgtgctatcccccacaaaagaccctcacactcgtagca 1791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5827 ctcagtgcaacggaccccttgtcgtgctatcccccacaaaagaccctcacactcgtagca 5768 Query: 1792 gtacgttggtgacgtagcagtccataacaaaaaattgtggggcgttgttgaggatatagg 1851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5767 gtacgttggtgacgtagcagtccataacaaaaaattgtggggcgttgttgaggatatagg 5708 Query: 1852 atatatcagggcttgtagagcttttttgtacacgtgcattttc 1894 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5707 atatatcagggcttgtagagcttttttgtacacgtgcattttc 5665 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 41,588 Number of Sequences: 18737 Number of extensions: 41588 Number of successful extensions: 989 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 979 Number of HSP's gapped (non-prelim): 10 length of query: 1943 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1925 effective length of database: 40,933,732 effective search space: 78797434100 effective search space used: 78797434100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY121635 AY121635|AY121635 Drosophila melanogaster GM04921 full insert cDNA. (1159 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,138 Number of Sequences: 18737 Number of extensions: 27138 Number of successful extensions: 839 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 839 Number of HSP's gapped (non-prelim): 0 length of query: 1159 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1141 effective length of database: 40,933,732 effective search space: 46705388212 effective search space used: 46705388212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY121636 AY121636|AY121636 Drosophila melanogaster GM08821 full insert cDNA. (1330 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 32,311 Number of Sequences: 18737 Number of extensions: 32311 Number of successful extensions: 1200 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1200 Number of HSP's gapped (non-prelim): 0 length of query: 1330 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1312 effective length of database: 40,933,732 effective search space: 53705056384 effective search space used: 53705056384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY121715 AY121715|AY121715 Drosophila melanogaster SD22445 full insert cDNA. (821 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,732 Number of Sequences: 18737 Number of extensions: 17732 Number of successful extensions: 373 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 373 Number of HSP's gapped (non-prelim): 0 length of query: 821 length of database: 41,270,998 effective HSP length: 17 effective length of query: 804 effective length of database: 40,952,469 effective search space: 32925785076 effective search space used: 32925785076 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY121716 AY121716|AY121716 Drosophila melanogaster SD25037 full insert cDNA. (1560 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15093-RA feature: mRNA loc=2R:complement(13839389..13840677);I... 1978 0.0 CG15093-RB feature: mRNA loc=2R:complement(13839388..13840546,13... 1764 0.0 CG15093-RC feature: mRNA loc=2R:complement(13839389..13840037,13... 813 0.0 >CG15093-RA feature: mRNA loc=2R:complement(13839389..13840677);ID=FBan0015093;gene _id=FBgn0034390;gene_sym=CG15093;sym=CG15093;scaffold=AE0 03798;len=1289 Length = 1289 Score = 1978 bits (998), Expect = 0.0 Identities = 1058/1078 (98%) Strand = Plus / Minus Query: 217 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1078 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 1019 Query: 277 cttgtgggccagagatcccagcgggatgggtgagttggaggcgttggccactccggaggc 336 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1018 cttgtgcgccagagatcccagcgggatgggtgagttggaagcgttggccactccggaggc 959 Query: 337 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 958 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 899 Query: 397 tggggcactggggcagactccgggcacggggttgtaaatctccgaggcccagcagcgtcc 456 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 898 tggggcactggggcagactccgggcacagggttgtagatctccgaggcccagcagcgtcc 839 Query: 457 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 838 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 779 Query: 517 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 778 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 719 Query: 577 ggcggcctgacccatgccatagacgccgcagtgggtgatcttcttgcccatgcactccaa 636 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 718 ggcggcctggcccatgccatagacgccgcagtgggtgatcttcttgcccatgcactctag 659 Query: 637 gacggccttgacggcattgtactccgcctcggtgccgcccaccatgaaggtgagggtggc 696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 gacggccttgacggcattgtactccgcctcggtgccgcccaccatgaaggtgagggtggc 599 Query: 697 ctgctcggcgccgggaactccgccggaaacgggggcatcgatgaaccgagctcccttggc 756 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 598 ctgctcggcgccgggaactccgccggaaacgggggcatcgataaaccgagctcccttggc 539 Query: 757 gctgatcttcttctgcagcgacttgaccaaatccggcgaaatcgtcgacgagtcaatgaa 816 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct: 538 gctgatcttcttctgcaacgacttgaccaaatccggcgagatcgtcgacgagtcaatgaa 479 Query: 817 gatggtgtccttgttgacgccatcggcagtcatctcatcgtaggaggcatccacaatggc 876 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 gatggtgtccttgttgacgccatcggcagtcatctcatcgtaggaggcatccacaatggc 419 Query: 877 attgttcggcagcatggtgatcacaaagtccgagttcttggccaactctgaggtcttggc 936 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 418 attgttcggcagcatggtgatcacaaagtccgagttcttggccagctccgaggtcttggc 359 Query: 937 gtagacggtggctcccttggcggccagaccatcgcaggcgggtttggagatatcaaagac 996 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 358 gtagacggtggctcccttggcggccagaccatcgcaggcgggcttggagatatcgaagac 299 Query: 997 atgcagcttgtggccggccttgattagattgctggccatgttggcacccatgttgcccag 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 atgcagcttgtggccggccttgattagattgctggccatgttggcacccatgttgcccag 239 Query: 1057 acccacgaagccgatgttcttggctccgccctgggtggacatagccctcacgagggtctg 1116 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 238 acccacgaagccgatgttcttggctccgccctgggtggacatggccctcacgagggtctg 179 Query: 1117 gctccaggcattcagcatagcgggggacatcacacggagcgacatgtctgcgaaaagttc 1176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 gctccaggcattcagcatagcgggggacatcacacggagcgacatgtctgcgaaaagttc 119 Query: 1177 tacagtgttatgtaatcacttcaaataggcaagtagccacaagatctcacccacctgttg 1236 |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| Sbjct: 118 tacagtgttatgtaatcacttcaaataggcaactagccaccagatttcacccacctgttg 59 Query: 1237 gtctaagaaatctaaggggatacggctgaaactgcgaaagttctacgtgatcggaccg 1294 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 58 gtgtaagaaatctaaggggatacggctgaaactgcaaaagttctacgtgatcggaccg 1 >CG15093-RB feature: mRNA loc=2R:complement(13839388..13840546, 13840614..13840761);ID=FBan0015093;gene_id=FBgn0034390;ge ne_sym=CG15093;sym=CG15093;scaffold=AE003798;len=1307 Length = 1307 Score = 1764 bits (890), Expect = 0.0 Identities = 935/950 (98%) Strand = Plus / Minus Query: 217 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1095 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 1036 Query: 277 cttgtgggccagagatcccagcgggatgggtgagttggaggcgttggccactccggaggc 336 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1035 cttgtgcgccagagatcccagcgggatgggtgagttggaagcgttggccactccggaggc 976 Query: 337 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 975 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 916 Query: 397 tggggcactggggcagactccgggcacggggttgtaaatctccgaggcccagcagcgtcc 456 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 915 tggggcactggggcagactccgggcacagggttgtagatctccgaggcccagcagcgtcc 856 Query: 457 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 855 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 796 Query: 517 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 795 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 736 Query: 577 ggcggcctgacccatgccatagacgccgcagtgggtgatcttcttgcccatgcactccaa 636 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 735 ggcggcctggcccatgccatagacgccgcagtgggtgatcttcttgcccatgcactctag 676 Query: 637 gacggccttgacggcattgtactccgcctcggtgccgcccaccatgaaggtgagggtggc 696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 675 gacggccttgacggcattgtactccgcctcggtgccgcccaccatgaaggtgagggtggc 616 Query: 697 ctgctcggcgccgggaactccgccggaaacgggggcatcgatgaaccgagctcccttggc 756 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 615 ctgctcggcgccgggaactccgccggaaacgggggcatcgataaaccgagctcccttggc 556 Query: 757 gctgatcttcttctgcagcgacttgaccaaatccggcgaaatcgtcgacgagtcaatgaa 816 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct: 555 gctgatcttcttctgcaacgacttgaccaaatccggcgagatcgtcgacgagtcaatgaa 496 Query: 817 gatggtgtccttgttgacgccatcggcagtcatctcatcgtaggaggcatccacaatggc 876 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 gatggtgtccttgttgacgccatcggcagtcatctcatcgtaggaggcatccacaatggc 436 Query: 877 attgttcggcagcatggtgatcacaaagtccgagttcttggccaactctgaggtcttggc 936 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 435 attgttcggcagcatggtgatcacaaagtccgagttcttggccagctccgaggtcttggc 376 Query: 937 gtagacggtggctcccttggcggccagaccatcgcaggcgggtttggagatatcaaagac 996 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 375 gtagacggtggctcccttggcggccagaccatcgcaggcgggcttggagatatcgaagac 316 Query: 997 atgcagcttgtggccggccttgattagattgctggccatgttggcacccatgttgcccag 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 atgcagcttgtggccggccttgattagattgctggccatgttggcacccatgttgcccag 256 Query: 1057 acccacgaagccgatgttcttggctccgccctgggtggacatagccctcacgagggtctg 1116 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 255 acccacgaagccgatgttcttggctccgccctgggtggacatggccctcacgagggtctg 196 Query: 1117 gctccaggcattcagcatagcgggggacatcacacggagcgacatgtctg 1166 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 gctccaggcattcagcatagcgggggacatcacacggagcgacatgtctg 146 >CG15093-RC feature: mRNA loc=2R:complement(13839389..13840037,13840262..13840546, 13840614..13840761);ID=FBan0015093;gene_id=FBgn0034390;g ene_sym=CG15093;sym=CG15093;scaffold=AE003798;len=1082 Length = 1082 Score = 813 bits (410), Expect = 0.0 Identities = 431/438 (98%) Strand = Plus / Minus Query: 217 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 871 gtcgtacaccacggagaagtccttgttgcccagacccttatcgcacagcgactggtagac 812 Query: 277 cttgtgggccagagatcccagcgggatgggtgagttggaggcgttggccactccggaggc 336 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 811 cttgtgcgccagagatcccagcgggatgggtgagttggaagcgttggccactccggaggc 752 Query: 337 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 cagacccagatccttggtgatcagagccgaggagaaaccgccggcgtagtccctgttggc 692 Query: 397 tggggcactggggcagactccgggcacggggttgtaaatctccgaggcccagcagcgtcc 456 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 691 tggggcactggggcagactccgggcacagggttgtagatctccgaggcccagcagcgtcc 632 Query: 457 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 ggtggaggagttgatgatctcggcgaagacattggcatcgagaccctggcgcaccgccag 572 Query: 517 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 attcatggcctccgaaacaccgatcatcgagatggccagcatcatgttgttgcacagctt 512 Query: 577 ggcggcctgacccatgccatagacgccgcagtgggtgatcttcttgcccatgcactccaa 636 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 511 ggcggcctggcccatgccatagacgccgcagtgggtgatcttcttgcccatgcactctag 452 Query: 637 gacggccttgacggcatt 654 |||||||||||||||||| Sbjct: 451 gacggccttgacggcatt 434 Score = 533 bits (269), Expect = e-150 Identities = 284/289 (98%) Strand = Plus / Minus Query: 878 ttgttcggcagcatggtgatcacaaagtccgagttcttggccaactctgaggtcttggcg 937 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 434 ttgttcggcagcatggtgatcacaaagtccgagttcttggccagctccgaggtcttggcg 375 Query: 938 tagacggtggctcccttggcggccagaccatcgcaggcgggtttggagatatcaaagaca 997 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 374 tagacggtggctcccttggcggccagaccatcgcaggcgggcttggagatatcgaagaca 315 Query: 998 tgcagcttgtggccggccttgattagattgctggccatgttggcacccatgttgcccaga 1057 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 tgcagcttgtggccggccttgattagattgctggccatgttggcacccatgttgcccaga 255 Query: 1058 cccacgaagccgatgttcttggctccgccctgggtggacatagccctcacgagggtctgg 1117 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 254 cccacgaagccgatgttcttggctccgccctgggtggacatggccctcacgagggtctgg 195 Query: 1118 ctccaggcattcagcatagcgggggacatcacacggagcgacatgtctg 1166 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 ctccaggcattcagcatagcgggggacatcacacggagcgacatgtctg 146 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 39,431 Number of Sequences: 18737 Number of extensions: 39431 Number of successful extensions: 1010 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 995 Number of HSP's gapped (non-prelim): 11 length of query: 1560 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1542 effective length of database: 40,933,732 effective search space: 63119814744 effective search space used: 63119814744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY121717 AY121717|AY121717 Drosophila melanogaster SD25955 full insert cDNA. (1573 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 29,719 Number of Sequences: 18737 Number of extensions: 29719 Number of successful extensions: 767 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 767 Number of HSP's gapped (non-prelim): 0 length of query: 1573 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1555 effective length of database: 40,933,732 effective search space: 63651953260 effective search space used: 63651953260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY122078 AY122078|AY122078 Drosophila melanogaster AT19369 full insert cDNA. (4050 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Fs-RA feature: mRNA loc=2R:complement(10287281..10287980,1028804... 478 e-133 >Fs-RA feature: mRNA loc=2R:complement(10287281..10287980,10288047..10288171, 10296036..10296284,10297415..10297538,10297643..10298517, 10298583..10298768,10299586..10300267,10303294..10303524, 10304922..10305304);ID=FBan0033466;gene_id=FBgn0053466;ge ne_sym=Fs;sym=CG33466;scaffold=AE003811;len=3555 Length = 3555 Score = 478 bits (241), Expect = e-133 Identities = 247/249 (99%) Strand = Plus / Minus Query: 3672 ctcgacagggacccggatatgccacggcgatggaacgtccaattttgcaaatcattcgat 3731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2730 ctcgacagggacccggatatgccacggcgatggaacgtccaattttgcaaatcattcgat 2671 Query: 3732 ttatatcacaggcgctcctgtacgtcttcccatccacaccgcacaccgcttgtcgctcgt 3791 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 2670 ttatatcacaggcgctcctgtacgtcttcccatccacaccgcacaccgcctgtcgctcgt 2611 Query: 3792 cgtaaccactggagtccacatccaggttgtcccagggacactcgatccggcaggcgatac 3851 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2610 cgtagccactggagtccacatccaggttgtcccagggacactcgatccggcaggcgatac 2551 Query: 3852 agtggggcatcagatactgatcctccacgcaggtcaatccgttcaagcaatggactccgc 3911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2550 agtggggcatcagatactgatcctccacgcaggtcaatccgttcaagcaatggactccgc 2491 Query: 3912 tgcagctgt 3920 ||||||||| Sbjct: 2490 tgcagctgt 2482 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 82,531 Number of Sequences: 18737 Number of extensions: 82531 Number of successful extensions: 1898 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1896 Number of HSP's gapped (non-prelim): 2 length of query: 4050 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4031 effective length of database: 40,914,995 effective search space: 164928344845 effective search space used: 164928344845 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY122114 AY122114|AY122114 Drosophila melanogaster GH15538 full insert cDNA. (2694 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 51,987 Number of Sequences: 18737 Number of extensions: 51987 Number of successful extensions: 1243 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1243 Number of HSP's gapped (non-prelim): 0 length of query: 2694 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2675 effective length of database: 40,914,995 effective search space: 109447611625 effective search space used: 109447611625 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AY122226 AY122226|AY122226 Drosophila melanogaster RE25373 full insert cDNA. (2187 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32169-RA feature: mRNA loc=3L:complement(17015612..17015720,17... 1227 0.0 >CG32169-RA feature: mRNA loc=3L:complement(17015612..17015720,17016017..17016258, 17016869..17016938,17023073..17023156,17023233..17023268, 17026502..17026586, 17026996..17027081);ID=FBan0032169;gene_id=FBgn0052169;ge ne_sym=CG32169;sym=CG32169;scaffold=AE003525;len=712 Length = 712 Score = 1227 bits (619), Expect = 0.0 Identities = 632/636 (99%), Gaps = 4/636 (0%) Strand = Plus / Plus Query: 1481 aggttttggcttcgttacatttcaaagcgaagatgtggtagacaaagtttgcgaaattca 1540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 aggttttggcttcgttacatttcaaagcgaagatgtggtagacaaagtttgcgaaattca 61 Query: 1541 tttccacgagataaacaacaaaatggtcgagtgcaagaaggcgcagccgaaggaagtgat 1600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 tttccacgagataaacaacaaaatggtcgagtgcaagaaggcgcagccgaaggaagtgat 121 Query: 1601 gctgccggccaatctggccaagacgcgggctgccgggcgttctgcatacgataacatcat 1660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 gctgccggccaatctggccaagacgcgggctgccgggcgttctgcatacgataacatcat 181 Query: 1661 gtggggactggggacattgcccgaaggttttccggcagctgcctatgctgcttatgccgc 1720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 gtggggactggggacattgcccgaaggttttccggcagctgcctatgctgcttatgccgc 241 Query: 1721 tggtcgcggatactcgggctatcccagttttggactgccctatccaactgttgatctaac 1780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 tggtcgcggatactcgggctatcccagttttggactgccctatccaactgttgatctaac 301 Query: 1781 caatgggcagctgacacccaacaacaatacaccgctgctgacccaggcgctgtcag---- 1836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 caatgggcagctgacacccaacaacaatacaccgctgctgacccaggcgctgtcaggtga 361 Query: 1837 tgatgaacaactatcaggcggctgctgccgctgcccacagctatgggccgtcggcatcgc 1896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 tgatgaacaactatcaggcggctgctgccgctgcccacagctatgggccgtcggcatcgc 421 Query: 1897 cgcatgccgccgccgccaacacggccacccggcagggattcccctccaccaactcacctg 1956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 cgcatgccgccgccgccaacacggccacccggcagggattcccctccaccaactcacctg 481 Query: 1957 gccccaccatcgacatgtacagctcggcggccgccgacaatgtgggctatgtgcaggcca 2016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 gccccaccatcgacatgtacagctcggcggccgccgacaatgtgggctatgtgcaggcca 541 Query: 2017 ccagtccgcagccgtccggcttccccatcgccgtcagccgcgccccgttgaactacagcc 2076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 ccagtccgcagccgtccggcttccccatcgccgtcagccgcgccccgttgaactacagcc 601 Query: 2077 cgatttattcgttgaactttgcgatggctaatatat 2112 |||||||||||||||||||||||||||||||||||| Sbjct: 602 cgatttattcgttgaactttgcgatggctaatatat 637 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 51,730 Number of Sequences: 18737 Number of extensions: 51730 Number of successful extensions: 1523 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1520 Number of HSP's gapped (non-prelim): 2 length of query: 2187 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2169 effective length of database: 40,933,732 effective search space: 88785264708 effective search space used: 88785264708 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001261 BT001261|BT001261 Drosophila melanogaster AT02529 full insert cDNA. (5067 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8184-RB feature: mRNA loc=X:join(15445129..15445395,15445731..... 3901 0.0 CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042... 2777 0.0 >CG8184-RB feature: mRNA loc=X:join(15445129..15445395,15445731..15445970, 15446040..15446261,15446320..15446591,15446672..15447168, 15447306..15452413,15452578..15455392,15455456..15455929, 15455988..15456328,15456391..15457461,15457552..15457687, 15457747..15460371,15460444..15460845,15460913..15461101, 15461166..15461487,15461551..15461716,15461791..15461981, 15462059..15462502);ID=FBan0008184;gene_id=FBgn0030674;gen e_sym=CG8184;sym=CG8184;scaffold=AE003500;len=15782 Length = 15782 Score = 3901 bits (1968), Expect = 0.0 Identities = 1980/1984 (99%) Strand = Plus / Minus Query: 1 ctgtctgttcgcaccacatccggagcggtgacatttagctgctccagtgccgcattagac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10508 ctgtctgttcgcaccacatccggagcggtgacatttagctgctccagtgccgcattagac 10449 Query: 61 attggcgtcggcatggatacaagcgtcggagctggcgttctgtttgcactgggtcggggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10448 attggcgtcggcatggatacaagcgtcggagctggcgttctgtttgcactgggtcggggg 10389 Query: 121 aaaatggagccggccgggtggtcatgacgctgcagacaggcgggtaagtcgcgattgggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10388 aaaatggagccggccgggtggtcatgacgctgcagacaggcgggtaagtcgcgattgggc 10329 Query: 181 cgggcgttaattagcgccgagcctgaagtgcgcgaggaattagtgtgtccgctggatcct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10328 cgggcgttaattagcgccgagcctgaagtgcgcgaggaattagtgtgtccgctggatcct 10269 Query: 241 tgcaggcggttgcgtatctggcgatcagtcaactgcaagaggagcagctctgtctcatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10268 tgcaggcggttgcgtatctggcgatcagtcaactgcaagaggagcagctctgtctcatca 10209 Query: 301 agacgcgtgtggggtcgcgatggtcttccgctggacggtagaagtggcaccggtggatgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10208 agacgcgtgtggggtcgcgatggtcttccgctggacggtagaagtggcaccggtggatgg 10149 Query: 361 cgctgatgctgtggcaccgccacctgtgccgccgtagaggaggagttatgctgtgactgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10148 cgctgatgctgtggcaccgccacctgtgccgccgtagaggaggagttatgctgtgactgt 10089 Query: 421 gattcagctccatccgctgctgtccctgttgtcgtgctagtggacctgtcaccttcgcta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10088 gattcagctccatccgctgctgtccctgttgtcgtgctagtggacctgtcaccttcgcta 10029 Query: 481 tcctgttcgttagttaaatcaatctcggcgtaaatgttgaagggcagttgactttgctga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10028 tcctgttcgttagttaaatcaatctcggcgtaaatgttgaagggcagttgactttgctga 9969 Query: 541 cgtaatccaccgcgttggcgtggcggtcgggttgtcgtttgcgtctccgaggagacgttg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9968 cgtaatccaccgcgttggcgtggcggtcgggttgtcgtttgcgtctccgaggagacgttg 9909 Query: 601 ctgtcaacggacgagaaattcctagttggtccaccagttgttgtcgtggcatcgctggtg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9908 ctgtcaacggacgagaaattcctagttggtccaccagttgttgtcgtggcatcgctggtg 9849 Query: 661 gcaccatttcccgtagcacttgtcgcgctgctagcgctactaggaccaagtgttgacgaa 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9848 gcaccatttcccgtagcacttgtcgcgctgctagcgctactaggaccaagtgttgacgaa 9789 Query: 721 atcagcacaggaatcgaactgcgccgggtgccgcccgtggcagatgctgccactggtggc 780 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 9788 atcagcacaggaatcgaactgcgccgggtgccgccagtggcagatgctgccactggtggc 9729 Query: 781 actaccaagctgctgcttcctgagcccgcagagacggcgttcgccagtaaaccggacgca 840 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 9728 actaccaagctgctgcttcctgagcctgcagagacggcgttcgccagtaaaccggacgca 9669 Query: 841 atcgatgatgtcgctgtgggcgctgctgtgcccacaactgacgtagtgctggaggacgtt 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9668 atcgatgatgtcgctgtgggcgctgctgtgcccacaactgacgtagtgctggaggacgtt 9609 Query: 901 gcagatgcattcgaacccgacgccggtgttgtggattggcgagcggcttcctcctgcttg 960 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 9608 gcagatgcattcgaacccgacgccggtgttgtggattggcgggcggcttcctcctgcttg 9549 Query: 961 cgctgctggtgcgctgctttcagctccttgatgagatgtggcagcaaaaaatgagcggca 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9548 cgctgctggtgcgctgctttcagctccttgatgagatgtggcagcaaaaaatgagcggca 9489 Query: 1021 tacagacaggcgtccgtctggctttccatgtccaggagcgtggcctcttctagccaccag 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9488 tacagacaggcgtccgtctggctttccatgtccaggagcgtggcctcttctagccaccag 9429 Query: 1081 tgaagagcatcctgtgtgaaagtctccatctgggtctcttcagtggggttctgatgcgtg 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9428 tgaagagcatcctgtgtgaaagtctccatctgggtctcttcagtggggttctgatgcgtg 9369 Query: 1141 ggcatgcacacacagtactgctggtccagatagagtaaccgacgccgcactccgttcgtg 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9368 ggcatgcacacacagtactgctggtccagatagagtaaccgacgccgcactccgttcgtg 9309 Query: 1201 cagagggttgcatttggatgttgtcccgtggtgccaccgtttgcaccgaccccgccgacg 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9308 cagagggttgcatttggatgttgtcccgtggtgccaccgtttgcaccgaccccgccgacg 9249 Query: 1261 ccggaggctgatcctccgccaccaccaccgccagcacccgttggttgttcgttcagcagc 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9248 ccggaggctgatcctccgccaccaccaccgccagcacccgttggttgttcgttcagcagc 9189 Query: 1321 tcactcatggtctggccgctgccaggtgcaccaccagcgcgctccagtgacatggagggc 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9188 tcactcatggtctggccgctgccaggtgcaccaccagcgcgctccagtgacatggagggc 9129 Query: 1381 gttatgaatacgttcatatcgccaccgttggcgttgccaccaatagctggtccgctgccc 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9128 gttatgaatacgttcatatcgccaccgttggcgttgccaccaatagctggtccgctgccc 9069 Query: 1441 atggagctatccccgcccgaaattctaatgaaattaaagtccggtgccatccacgaacca 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9068 atggagctatccccgcccgaaattctaatgaaattaaagtccggtgccatccacgaacca 9009 Query: 1501 gatgatgggcgaagtgcggcagaggcaattgctccaatactggctgttgtgccgcccgta 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9008 gatgatgggcgaagtgcggcagaggcaattgctccaatactggctgttgtgccgcccgta 8949 Query: 1561 gaagatctttggccagagccaccggacgatcctgtggcgcccgcattgcttccacttccc 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8948 gaagatctttggccagagccaccggacgatcctgtggcgcccgcattgcttccacttccc 8889 Query: 1621 gcattgccgccattcacatcaatgtcaagtggttgggcaatggagctgttcattcgcaca 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8888 gcattgccgccattcacatcaatgtcaagtggttgggcaatggagctgttcattcgcaca 8829 Query: 1681 cgaaaaccaaccggcggtgttggcattaagccgctgcccaatcgctcgtacagataggcc 1740 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 8828 cgaaaaccaaccggcggtgttggcattaaaccgctgcccaatcgctcgtacagataggcc 8769 Query: 1741 tccgcctgggctgccgatggtccgctaattggatccacgtccggatctccatcgggatca 1800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8768 tccgcctgggctgccgatggtccgctaattggatccacgtccggatctccatcgggatca 8709 Query: 1801 gcatccacatcgtcgtcctcatcgtccacttcgtcatcgggattggttcgattggcggaa 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8708 gcatccacatcgtcgtcctcatcgtccacttcgtcatcgggattggttcgattggcggaa 8649 Query: 1861 ccatcgccagaagcattaaccgctgcactgcgtctgggacgattgttcgaagacaccaga 1920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8648 ccatcgccagaagcattaaccgctgcactgcgtctgggacgattgttcgaagacaccaga 8589 Query: 1921 gcgagagcgatatcgattcggttctcgatctctgcatccatgacgctttggacctcctcc 1980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8588 gcgagagcgatatcgattcggttctcgatctctgcatccatgacgctttggacctcctcc 8529 Query: 1981 cgaa 1984 |||| Sbjct: 8528 cgaa 8525 Score = 3146 bits (1587), Expect = 0.0 Identities = 1587/1587 (100%) Strand = Plus / Minus Query: 2049 atcgttatccacatctgcatcgttggacgccgtttcagatgattccggctcatagatgtg 2108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8460 atcgttatccacatctgcatcgttggacgccgtttcagatgattccggctcatagatgtg 8401 Query: 2109 atcgaagacctcgataaactggcgcgatcgctcttcatccacatccgtctcactatgctc 2168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8400 atcgaagacctcgataaactggcgcgatcgctcttcatccacatccgtctcactatgctc 8341 Query: 2169 atccacatcctcatcgggagcgtcatcatcctcatcttcgtcctcctcattgcgctcgtc 2228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8340 atccacatcctcatcgggagcgtcatcatcctcatcttcgtcctcctcattgcgctcgtc 8281 Query: 2229 gttctctgtggaaggatccgaatcagattctgaggtactgacatcgccaagcagcgaggc 2288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8280 gttctctgtggaaggatccgaatcagattctgaggtactgacatcgccaagcagcgaggc 8221 Query: 2289 gttcaaatcacgagcaccacctggagctcccgtgtctgatgaggtggacgcaccatcact 2348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8220 gttcaaatcacgagcaccacctggagctcccgtgtctgatgaggtggacgcaccatcact 8161 Query: 2349 tccaccgccgccgctgattccattgtcgttgaccacacctgcgttggacccgctgccgct 2408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8160 tccaccgccgccgctgattccattgtcgttgaccacacctgcgttggacccgctgccgct 8101 Query: 2409 accgctaccattgccactgcctacatcaacatcgggattggtgcgcaagcgaagatttcc 2468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8100 accgctaccattgccactgcctacatcaacatcgggattggtgcgcaagcgaagatttcc 8041 Query: 2469 gatcccggagttgttacctgagttggtcgaactggctgtggtgttgcttccgttctgctg 2528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8040 gatcccggagttgttacctgagttggtcgaactggctgtggtgttgcttccgttctgctg 7981 Query: 2529 cccggatgagcttgctccaacggatccactgccggaaccggctccaccgccgctccgcga 2588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7980 cccggatgagcttgctccaacggatccactgccggaaccggctccaccgccgctccgcga 7921 Query: 2589 agccagacgcagtccctcgctctgcaggaaatcatcccacaattgatcgaagttgaccac 2648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7920 agccagacgcagtccctcgctctgcaggaaatcatcccacaattgatcgaagttgaccac 7861 Query: 2649 tggacgcactgggccgccactggtcgaggattgtcctgcaccagatgatgcagagctcac 2708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7860 tggacgcactgggccgccactggtcgaggattgtcctgcaccagatgatgcagagctcac 7801 Query: 2709 gtttgccggaggatcgttggtatctccgccattgctacgctcctcgactacgtcgataac 2768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7800 gtttgccggaggatcgttggtatctccgccattgctacgctcctcgactacgtcgataac 7741 Query: 2769 ggctgcggaactattacccgatactgatccagacacgcctcctccgacactgcccgctcc 2828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7740 ggctgcggaactattacccgatactgatccagacacgcctcctccgacactgcccgctcc 7681 Query: 2829 tgagccacctccacccactccagatccgggagcagctgcgtcctcagagtccacggccat 2888 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7680 tgagccacctccacccactccagatccgggagcagctgcgtcctcagagtccacggccat 7621 Query: 2889 atcgtccgaattgaagatgaactcgaaggcatgtcgccgatccgacagtacattccgtat 2948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7620 atcgtccgaattgaagatgaactcgaaggcatgtcgccgatccgacagtacattccgtat 7561 Query: 2949 gatatctcgcagaacgtgctctccacccatagcattggaacgctccatagcggaaccgaa 3008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7560 gatatctcgcagaacgtgctctccacccatagcattggaacgctccatagcggaaccgaa 7501 Query: 3009 accagtgcgtgccgccagacgaggatatagtcgccggttaataatggtcccgtacgtgtt 3068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7500 accagtgcgtgccgccagacgaggatatagtcgccggttaataatggtcccgtacgtgtt 7441 Query: 3069 gccagatcctggtccgttgccactgctgccgccggcagtgttattgccattgccagacgc 3128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7440 gccagatcctggtccgttgccactgctgccgccggcagtgttattgccattgccagacgc 7381 Query: 3129 atttggtccgccagggccgccactgccaaagagaatcctcttcgagcccagcgtcgtggt 3188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7380 atttggtccgccagggccgccactgccaaagagaatcctcttcgagcccagcgtcgtggt 7321 Query: 3189 ggacacgctgaatcgcagcaggatctccatcggtcgcagaatggccgcaagggtgcttag 3248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7320 ggacacgctgaatcgcagcaggatctccatcggtcgcagaatggccgcaagggtgcttag 7261 Query: 3249 cgtattgtgattggacagatccttgtactgcgccacttttgtcagataggtcatcacgcc 3308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7260 cgtattgtgattggacagatccttgtactgcgccacttttgtcagataggtcatcacgcc 7201 Query: 3309 ctggcgtaggagcacccggtacatattgttgcgatgcatgtgcaccttgtcgtacagcat 3368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7200 ctggcgtaggagcacccggtacatattgttgcgatgcatgtgcaccttgtcgtacagcat 7141 Query: 3369 tggcgactcaatgagattggggaaaaggctcatcaagacctgcaatctcgtgtgcttctc 3428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7140 tggcgactcaatgagattggggaaaaggctcatcaagacctgcaatctcgtgtgcttctc 7081 Query: 3429 ggccgaatccggctgggccagggctctggcgacagcagcgtgcagctcctcggcgacatg 3488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7080 ggccgaatccggctgggccagggctctggcgacagcagcgtgcagctcctcggcgacatg 7021 Query: 3489 gacctggactccgggctgctgatagcagtccgatagggagcagatcagtacgcgggtcat 3548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7020 gacctggactccgggctgctgatagcagtccgatagggagcagatcagtacgcgggtcat 6961 Query: 3549 tgtgctgacctcgggcacatgatgccgttgggttatgggcaggaagcgatcaaggagcac 3608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6960 tgtgctgacctcgggcacatgatgccgttgggttatgggcaggaagcgatcaaggagcac 6901 Query: 3609 gcccaagaacgtctgttgaggtgcgga 3635 ||||||||||||||||||||||||||| Sbjct: 6900 gcccaagaacgtctgttgaggtgcgga 6874 >CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042645..2042811, 2042871..2043888);ID=FBan0030156;gene_id=FBgn0050156;gene _sym=CG30156;sym=CG30156;scaffold=AE003790;len=1425 Length = 1425 Score = 2777 bits (1401), Expect = 0.0 Identities = 1407/1409 (99%) Strand = Plus / Plus Query: 3635 aaaatgttgactggcgaaagtcaatttgtatttaagtttgcagctacatatacatataca 3694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11 aaaatgttgactggcgaaagtcaatttgtatttaagtttgcagctacatatacatataca 70 Query: 3695 gtcaacttagttcgaaactatttcggttacctctaatatacatacaaaagcactttgtta 3754 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 71 gtcaacttagttcgaaactatttcggctacctctaatatacatacaaaagcactttgtta 130 Query: 3755 aattcaccaactcggtggattgtcccagaacaacaaaccaaaatttaaaatttgcaaacg 3814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 aattcaccaactcggtggattgtcccagaacaacaaaccaaaatttaaaatttgcaaacg 190 Query: 3815 aacagagaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagtaa 3874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 aacagagaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagtaa 250 Query: 3875 ccaagaactggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcactg 3934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 ccaagaactggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcactg 310 Query: 3935 cgtcgacaaggtggtgagtgacctgtgcctgggacactacgagcacgctctgaggcagat 3994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 cgtcgacaaggtggtgagtgacctgtgcctgggacactacgagcacgctctgaggcagat 370 Query: 3995 caacgaggatctggaaggcttacagaaccacgatgagatcatggcgctgctggagctaaa 4054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 caacgaggatctggaaggcttacagaaccacgatgagatcatggcgctgctggagctaaa 430 Query: 4055 gaatatcattttgagactgaggctgaagggcgaggcccagcggaccataggcccaactcg 4114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 gaatatcattttgagactgaggctgaagggcgaggcccagcggaccataggcccaactcg 490 Query: 4115 caaatctgacgccctgccccacaagttcacactccagatgctggacgtggtgcagaaggt 4174 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 491 caaatctgacgccctgccccacaagttcacactcgagatgctggacgtggtgcagaaggt 550 Query: 4175 cctgcggtgccgcaatcactacgaggtgctgcgcatctctcatcatgccacctactccga 4234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 551 cctgcggtgccgcaatcactacgaggtgctgcgcatctctcatcatgccacctactccga 610 Query: 4235 ggtgaagcgggcctaccacaagctggccctgcgcctccatccggacaagaacaaatctcc 4294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 611 ggtgaagcgggcctaccacaagctggccctgcgcctccatccggacaagaacaaatctcc 670 Query: 4295 tggggctgagcaggccttccggcggatcagcgaggcggctgactgcctcacggactgcca 4354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 671 tggggctgagcaggccttccggcggatcagcgaggcggctgactgcctcacggactgcca 730 Query: 4355 gaaaaggattgagtacaacatagcaacggcagtgggcgactgccacgaccaggatccctc 4414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 731 gaaaaggattgagtacaacatagcaacggcagtgggcgactgccacgaccaggatccctc 790 Query: 4415 gcagtacaaggattatcgcggggaaagtgaattcaatgaggcaaatgggaacgatctggg 4474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 791 gcagtacaaggattatcgcggggaaagtgaattcaatgaggcaaatgggaacgatctggg 850 Query: 4475 agccgctttcagaaggccttatcggggggccaatcagcggatgccccagaggcagtcact 4534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 851 agccgctttcagaaggccttatcggggggccaatcagcggatgccccagaggcagtcact 910 Query: 4535 ctaccaaacacagcaactcgtcatcggagtggtggctgctctggtttttctcttcgtcac 4594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 911 ctaccaaacacagcaactcgtcatcggagtggtggctgctctggtttttctcttcgtcac 970 Query: 4595 catgcacttcatcgcaggcgctcctgcttacagttttacgctaaccagaacccacagcgc 4654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 971 catgcacttcatcgcaggcgctcctgcttacagttttacgctaaccagaacccacagcgc 1030 Query: 4655 tcgacggctcagtcggacgaaccacattgcctactacatgaatccgacgactctgtccaa 4714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1031 tcgacggctcagtcggacgaaccacattgcctactacatgaatccgacgactctgtccaa 1090 Query: 4715 gtacacagaacagcagttggccgaactggaagtagaaatcgaggaggtttacatctcgga 4774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1091 gtacacagaacagcagttggccgaactggaagtagaaatcgaggaggtttacatctcgga 1150 Query: 4775 cctcaaacataagtgcaggcaagagcggagttggagggataatctgtttctcagggcgag 4834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1151 cctcaaacataagtgcaggcaagagcggagttggagggataatctgtttctcagggcgag 1210 Query: 4835 gcagggaaacaacgaccagaagttgctccagcatgtcagccagatgtccactcccgcttg 4894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1211 gcagggaaacaacgaccagaagttgctccagcatgtcagccagatgtccactcccgcttg 1270 Query: 4895 ccaggcgttgctccagctgggaaagtctggtcacagtcgactgttgctcgagaacgagtc 4954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1271 ccaggcgttgctccagctgggaaagtctggtcacagtcgactgttgctcgagaacgagtc 1330 Query: 4955 tttgaatcaggacgtgccagtctgatactctgtacttttctattgatagatgtagggatt 5014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1331 tttgaatcaggacgtgccagtctgatactctgtacttttctattgatagatgtagggatt 1390 Query: 5015 agtgcacggtgtaaataaagagtagtttt 5043 ||||||||||||||||||||||||||||| Sbjct: 1391 agtgcacggtgtaaataaagagtagtttt 1419 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 140,139 Number of Sequences: 18737 Number of extensions: 140139 Number of successful extensions: 4225 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4216 Number of HSP's gapped (non-prelim): 9 length of query: 5067 length of database: 41,270,998 effective HSP length: 19 effective length of query: 5048 effective length of database: 40,914,995 effective search space: 206538894760 effective search space used: 206538894760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001303 BT001303|BT001303 Drosophila melanogaster AT12662 full insert cDNA. (1871 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11768-RA feature: mRNA loc=3R:complement(4579846..4580147,4580... 2321 0.0 >CG11768-RA feature: mRNA loc=3R:complement(4579846..4580147, 4580224..4581406);ID=FBan0011768;gene_id=FBgn0037625;gene _sym=CG11768;sym=CG11768;scaffold=AE003680;len=1485 Length = 1485 Score = 2321 bits (1171), Expect = 0.0 Identities = 1180/1183 (99%) Strand = Plus / Minus Query: 424 ccctcttgtccggcttgagcatagccacctggtcgtcgagaaaccactccagatgcagtc 483 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1183 ccctcttgtccggcttgagcatagccacctggtcgtcgagaagccactccagatgcagtc 1124 Query: 484 ccgatcgattggagtagcgatcaaggctgttgcggtcccatgtaacgtgctcccagtgat 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 ccgatcgattggagtagcgatcaaggctgttgcggtcccatgtaacgtgctcccagtgat 1064 Query: 544 cagtcatgatggcagcgcacagcatggctgtggcgcttgtggtcatcagcagagtgacga 603 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1063 cagtcatgatggcagcgcacagcatggctgtggcgcttgtagtcatcagcagagtgacga 1004 Query: 604 acaggaagagcaccggcggcgggcccatgcagcagctggagcaacaggtgctgccgcctc 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1003 acaggaagagcaccggcggcgggcccatgcagcagctggagcaacaggtgctgccgcctc 944 Query: 664 ccctaccgcccatgcccattcccagaccctccatctgggagcccagtgagttgggtgaac 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 943 ccctaccgcccatgcccattcccagaccctccatctgggagcccagtgagttgggtgaac 884 Query: 724 cactaccgctgccccgacgctgaatgaccttggcgcagctgttctgtcgcaacaggatgc 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 883 cactaccgctgccccgacgctgaatgaccttggcgcagctgttctgtcgcaacaggatgc 824 Query: 784 tgttgctccgccttagactctcgactgccgccgccgctgctgctgtggtcgttggattat 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 823 tgttgctccgccttagactctcgactgccgccgccgctgctgctgtggtcgttggattat 764 Query: 844 caaactgcagggatcctccaaccaccgaggaggggtgctcataaatgctgttgtgccggc 903 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 763 caaactgcagggatcctccaaccaccgaggaggggtgctcataaatgctgttgtgccggc 704 Query: 904 tgggtgcaaagtagtagcacgtcgtctggcggttatcggcggaactcgaggctaccggct 963 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 703 tgggtgcaaagtagtagcacgtcgtctggcggttatcgacggaactcgaggctaccggct 644 Query: 964 cgccgccgggcaactcctcattgctgctggagtagacgatggactgcttaaactgattcg 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 cgccgccgggcaactcctcattgctgctggagtagacgatggactgcttaaactgattcg 584 Query: 1024 agtagcagttttgcttgaagctctgctgttgctgctgctgttgcacgtacaaggcctcgt 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 agtagcagttttgcttgaagctctgctgttgctgctgctgttgcacgtacaaggcctcgt 524 Query: 1084 agtcgcagtgatgtggattccggtagatgactggccaggagcgagtggtcttggagttgt 1143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 agtcgcagtgatgtggattccggtagatgactggccaggagcgagtggtcttggagttgt 464 Query: 1144 ggctataacgctgggtcgatgtggttggcgctatagagccgggctcctccaccaacggcg 1203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 ggctataacgctgggtcgatgtggttggcgctatagagccgggctcctccaccaacggcg 404 Query: 1204 ttagctcattgggcggttccgccggctcggacaacttagtgtgctgctcctgcgcggaat 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 ttagctcattgggcggttccgccggctcggacaacttagtgtgctgctcctgcgcggaat 344 Query: 1264 gctccagatccggatcctcctgctgaacggtggttgccagctggcgctgaagcacgttct 1323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 gctccagatccggatcctcctgctgaacggtggttgccagctggcgctgaagcacgttct 284 Query: 1324 taaccgctgtaccactgccgctggccaagctgaaatcctcctcttcgaccagagtggccc 1383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 taaccgctgtaccactgccgctggccaagctgaaatcctcctcttcgaccagagtggccc 224 Query: 1384 cgcctggcgtggagaaaaggatgttagacgtcggcggcgaaggttgcgagcgactgcgga 1443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 cgcctggcgtggagaaaaggatgttagacgtcggcggcgaaggttgcgagcgactgcgga 164 Query: 1444 gcagggcaaagtgcttgggctggatggagccggttgctgtcgtcggcgacgtgatgctca 1503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 gcagggcaaagtgcttgggctggatggagccggttgctgtcgtcggcgacgtgatgctca 104 Query: 1504 cttcgggcacacagcgggccgtcaccttgtaccggctgccgctgccaacggcgacgccga 1563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 103 cttcgggcacacagcgggccgtcaccttgtaccggctgccgctgccaacggcgacgccga 44 Query: 1564 cgttgaccccaacgccgacgccgacgttgcccttggagcgcat 1606 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 43 cgttgaccccaacgccgacgccgacgttgcccttggagcgcat 1 Score = 593 bits (299), Expect = e-168 Identities = 302/303 (99%) Strand = Plus / Minus Query: 46 ttagtagagcggatgtggatctgggactgggattaacaaaccggctgcccctgaatacgt 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1485 ttagtagagcggatgtggatctgggactgggattaacaaaccggctgcccctgaatacgt 1426 Query: 106 actcagatgcggctgcagagtgacctgtgactcactgtgctgccagtcgttgcgctgctc 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1425 actcagatgcggctgcagagtgacctgtgactcactgtgctgccagtcgttgcgctgctc 1366 Query: 166 ctcgcctcgtgcgttttccattgagccagccaggtagtttacacacggaggagcaccgcg 225 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1365 ctcgcctcgtgcgttttccattgagccggccaggtagtttacacacggaggagcaccgcg 1306 Query: 226 tgggaacttggggttgcgccgcagttcctgcagctgctgaatgggcagatcaatgcacag 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1305 tgggaacttggggttgcgccgcagttcctgcagctgctgaatgggcagatcaatgcacag 1246 Query: 286 tgtccagatgccgccgtgcatgggcaccaggaaaacagagtcgcgccgaaagcgatgatc 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 tgtccagatgccgccgtgcatgggcaccaggaaaacagagtcgcgccgaaagcgatgatc 1186 Query: 346 ggc 348 ||| Sbjct: 1185 ggc 1183 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 86,248 Number of Sequences: 18737 Number of extensions: 86248 Number of successful extensions: 10329 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10325 Number of HSP's gapped (non-prelim): 2 length of query: 1871 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1853 effective length of database: 40,933,732 effective search space: 75850205396 effective search space used: 75850205396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001370 BT001370|BT001370 Drosophila melanogaster AT31442 full insert cDNA. (1111 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,837 Number of Sequences: 18737 Number of extensions: 21837 Number of successful extensions: 476 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 476 Number of HSP's gapped (non-prelim): 0 length of query: 1111 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1093 effective length of database: 40,933,732 effective search space: 44740569076 effective search space used: 44740569076 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001442 BT001442|BT001442 Drosophila melanogaster GH25527 full insert cDNA. (3227 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 64,574 Number of Sequences: 18737 Number of extensions: 64574 Number of successful extensions: 1889 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1889 Number of HSP's gapped (non-prelim): 0 length of query: 3227 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3208 effective length of database: 40,914,995 effective search space: 131255303960 effective search space used: 131255303960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001461 BT001461|BT001461 Drosophila melanogaster GM20929 full insert cDNA. (294 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6764 Number of Sequences: 18737 Number of extensions: 6764 Number of successful extensions: 531 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 531 Number of HSP's gapped (non-prelim): 0 length of query: 294 length of database: 41,270,998 effective HSP length: 16 effective length of query: 278 effective length of database: 40,971,206 effective search space: 11389995268 effective search space used: 11389995268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001707 BT001707|BT001707 Drosophila melanogaster RE66017 full insert cDNA. (3461 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 71,913 Number of Sequences: 18737 Number of extensions: 71913 Number of successful extensions: 1662 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1662 Number of HSP's gapped (non-prelim): 0 length of query: 3461 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3442 effective length of database: 40,914,995 effective search space: 140829412790 effective search space used: 140829412790 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001755 BT001755|BT001755 Drosophila melanogaster RH05583 full insert cDNA. (3578 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 119,372 Number of Sequences: 18737 Number of extensions: 119372 Number of successful extensions: 5367 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5367 Number of HSP's gapped (non-prelim): 0 length of query: 3578 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3559 effective length of database: 40,914,995 effective search space: 145616467205 effective search space used: 145616467205 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001757 BT001757|BT001757 Drosophila melanogaster RH06221 full insert cDNA. (713 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390... 1374 0.0 CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390... 1114 0.0 CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386... 801 0.0 CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386... 801 0.0 >CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=714 Length = 714 Score = 1374 bits (693), Expect = 0.0 Identities = 693/693 (100%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggca 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggca 420 Query: 422 acgttaagtgcgtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatc 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acgttaagtgcgtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatc 480 Query: 482 catacgactacatgcattaaaactaactcagatagccaatattcttgttgactaacagtg 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 catacgactacatgcattaaaactaactcagatagccaatattcttgttgactaacagtg 540 Query: 542 aactaaaccaaatcaaatggaactgcacgctctgcccaatgttaatttataatcgcaccc 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 aactaaaccaaatcaaatggaactgcacgctctgcccaatgttaatttataatcgcaccc 600 Query: 602 gtacacccgcagtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaat 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gtacacccgcagtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaat 660 Query: 662 gcatttgaataaactattacttgaagtgctttt 694 ||||||||||||||||||||||||||||||||| Sbjct: 661 gcatttgaataaactattacttgaagtgctttt 693 >CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7390524..7390851, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gene _sym=CG31305;sym=CG31305;scaffold=AE003692;len=1042 Length = 1042 Score = 1114 bits (562), Expect = 0.0 Identities = 562/562 (100%) Strand = Plus / Plus Query: 133 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 519 Query: 193 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 579 Query: 253 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 639 Query: 313 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 699 Query: 373 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 759 Query: 433 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 819 Query: 493 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 820 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 879 Query: 553 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 939 Query: 613 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 999 Query: 673 aactattacttgaagtgctttt 694 |||||||||||||||||||||| Sbjct: 1000 aactattacttgaagtgctttt 1021 >CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 801 bits (404), Expect = 0.0 Identities = 404/404 (100%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 405 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 404 >CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 801 bits (404), Expect = 0.0 Identities = 404/404 (100%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 405 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 404 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,526 Number of Sequences: 18737 Number of extensions: 18526 Number of successful extensions: 522 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 517 Number of HSP's gapped (non-prelim): 5 length of query: 713 length of database: 41,270,998 effective HSP length: 17 effective length of query: 696 effective length of database: 40,952,469 effective search space: 28502918424 effective search space used: 28502918424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001759 BT001759|BT001759 Drosophila melanogaster RH06474 full insert cDNA. (1935 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 46,132 Number of Sequences: 18737 Number of extensions: 46132 Number of successful extensions: 1339 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1339 Number of HSP's gapped (non-prelim): 0 length of query: 1935 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1917 effective length of database: 40,933,732 effective search space: 78469964244 effective search space used: 78469964244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001771 BT001771|BT001771 Drosophila melanogaster RH12372 full insert cDNA. (4120 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Ptp99A-RC feature: mRNA loc=3R:join(25272657..25272729,25276901.... 498 e-139 Ptp99A-RB feature: mRNA loc=3R:join(25276901..25277663,25286739.... 408 e-112 Ptp99A-RA feature: mRNA loc=3R:join(25272657..25272729,25276901.... 408 e-112 >Ptp99A-RC feature: mRNA loc=3R:join(25272657..25272729,25276901..25277663, 25286739..25286987,25288248..25288528,25289820..25289936, 25291352..25291491,25296555..25296844,25296956..25297296, 25297362..25297528,25297605..25298160,25298218..25298486, 25298557..25298831, 25299045..25302219);ID=FBan0002005;gene_id=FBgn0004369;ge ne_sym=Ptp99A;sym=CG2005;scaffold=AE003769;len=6696 Length = 6696 Score = 498 bits (251), Expect = e-139 Identities = 251/251 (100%) Strand = Plus / Minus Query: 888 ccttttacgccaaataagccccaaatgaaaacgtagttaaactcacgtaagttctgcagt 947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1086 ccttttacgccaaataagccccaaatgaaaacgtagttaaactcacgtaagttctgcagt 1027 Query: 948 tcgaagtgaatgagggtttccaccgaattgcgagagttcttgacgatctccacgccagtt 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1026 tcgaagtgaatgagggtttccaccgaattgcgagagttcttgacgatctccacgccagtt 967 Query: 1008 tggttgtcgtgtatgtggaacacatggtaaccggcgatggctccgttttgattctttggc 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 tggttgtcgtgtatgtggaacacatggtaaccggcgatggctccgttttgattctttggc 907 Query: 1068 ggatgccaggacatcgtgatgctgttggccgaaacatccaagatggttagattctgcggt 1127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 906 ggatgccaggacatcgtgatgctgttggccgaaacatccaagatggttagattctgcggt 847 Query: 1128 ttgcttggcac 1138 ||||||||||| Sbjct: 846 ttgcttggcac 836 >Ptp99A-RB feature: mRNA loc=3R:join(25276901..25277663,25286739..25286942, 25288248..25288528,25289820..25289936,25291352..25291491, 25296555..25296844,25296956..25297296,25297362..25297528, 25297605..25298160,25298218..25298486, 25298557..25299827);ID=FBan0002005;gene_id=FBgn0004369;ge ne_sym=Ptp99A;sym=CG2005;scaffold=AE003769;len=4399 Length = 4399 Score = 408 bits (206), Expect = e-112 Identities = 206/206 (100%) Strand = Plus / Minus Query: 933 cgtaagttctgcagttcgaagtgaatgagggtttccaccgaattgcgagagttcttgacg 992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 968 cgtaagttctgcagttcgaagtgaatgagggtttccaccgaattgcgagagttcttgacg 909 Query: 993 atctccacgccagtttggttgtcgtgtatgtggaacacatggtaaccggcgatggctccg 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 908 atctccacgccagtttggttgtcgtgtatgtggaacacatggtaaccggcgatggctccg 849 Query: 1053 ttttgattctttggcggatgccaggacatcgtgatgctgttggccgaaacatccaagatg 1112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 848 ttttgattctttggcggatgccaggacatcgtgatgctgttggccgaaacatccaagatg 789 Query: 1113 gttagattctgcggtttgcttggcac 1138 |||||||||||||||||||||||||| Sbjct: 788 gttagattctgcggtttgcttggcac 763 >Ptp99A-RA feature: mRNA loc=3R:join(25272657..25272729,25276901..25277663, 25286739..25286942,25288248..25288528,25289820..25289936, 25291352..25291491,25296555..25296844,25296956..25297296, 25297362..25297528,25297605..25298160,25298218..25298486, 25298557..25298831, 25299045..25302219);ID=FBan0002005;gene_id=FBgn0004369;ge ne_sym=Ptp99A;sym=CG2005;scaffold=AE003769;len=6651 Length = 6651 Score = 408 bits (206), Expect = e-112 Identities = 206/206 (100%) Strand = Plus / Minus Query: 933 cgtaagttctgcagttcgaagtgaatgagggtttccaccgaattgcgagagttcttgacg 992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1041 cgtaagttctgcagttcgaagtgaatgagggtttccaccgaattgcgagagttcttgacg 982 Query: 993 atctccacgccagtttggttgtcgtgtatgtggaacacatggtaaccggcgatggctccg 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 981 atctccacgccagtttggttgtcgtgtatgtggaacacatggtaaccggcgatggctccg 922 Query: 1053 ttttgattctttggcggatgccaggacatcgtgatgctgttggccgaaacatccaagatg 1112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 921 ttttgattctttggcggatgccaggacatcgtgatgctgttggccgaaacatccaagatg 862 Query: 1113 gttagattctgcggtttgcttggcac 1138 |||||||||||||||||||||||||| Sbjct: 861 gttagattctgcggtttgcttggcac 836 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 119,606 Number of Sequences: 18737 Number of extensions: 119606 Number of successful extensions: 2750 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2747 Number of HSP's gapped (non-prelim): 3 length of query: 4120 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4101 effective length of database: 40,914,995 effective search space: 167792394495 effective search space used: 167792394495 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001781 BT001781|BT001781 Drosophila melanogaster RH17774 full insert cDNA. (1082 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 22,486 Number of Sequences: 18737 Number of extensions: 22486 Number of successful extensions: 616 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 616 Number of HSP's gapped (non-prelim): 0 length of query: 1082 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1064 effective length of database: 40,933,732 effective search space: 43553490848 effective search space used: 43553490848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001789 BT001789|BT001789 Drosophila melanogaster RH23912 full insert cDNA. (486 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8082 Number of Sequences: 18737 Number of extensions: 8082 Number of successful extensions: 160 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 160 Number of HSP's gapped (non-prelim): 0 length of query: 486 length of database: 41,270,998 effective HSP length: 17 effective length of query: 469 effective length of database: 40,952,469 effective search space: 19206707961 effective search space used: 19206707961 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001805 BT001805|BT001805 Drosophila melanogaster RH30067 full insert cDNA. (2476 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 83,078 Number of Sequences: 18737 Number of extensions: 83078 Number of successful extensions: 8206 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8206 Number of HSP's gapped (non-prelim): 0 length of query: 2476 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2458 effective length of database: 40,933,732 effective search space: 100615113256 effective search space used: 100615113256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001807 BT001807|BT001807 Drosophila melanogaster RH31485 full insert cDNA. (494 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,478 Number of Sequences: 18737 Number of extensions: 10478 Number of successful extensions: 243 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 243 Number of HSP's gapped (non-prelim): 0 length of query: 494 length of database: 41,270,998 effective HSP length: 17 effective length of query: 477 effective length of database: 40,952,469 effective search space: 19534327713 effective search space used: 19534327713 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001811 BT001811|BT001811 Drosophila melanogaster RH35585 full insert cDNA. (1909 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 54,119 Number of Sequences: 18737 Number of extensions: 54119 Number of successful extensions: 1299 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1299 Number of HSP's gapped (non-prelim): 0 length of query: 1909 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1891 effective length of database: 40,933,732 effective search space: 77405687212 effective search space used: 77405687212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001816 BT001816|BT001816 Drosophila melanogaster RH38275 full insert cDNA. (2022 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 57,277 Number of Sequences: 18737 Number of extensions: 57277 Number of successful extensions: 2113 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2113 Number of HSP's gapped (non-prelim): 0 length of query: 2022 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2004 effective length of database: 40,933,732 effective search space: 82031198928 effective search space used: 82031198928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001822 BT001822|BT001822 Drosophila melanogaster RH42808 full insert cDNA. (2251 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 60,064 Number of Sequences: 18737 Number of extensions: 60064 Number of successful extensions: 1688 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1688 Number of HSP's gapped (non-prelim): 0 length of query: 2251 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2233 effective length of database: 40,933,732 effective search space: 91405023556 effective search space used: 91405023556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001826 BT001826|BT001826 Drosophila melanogaster RH44003 full insert cDNA. (2446 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 51,520 Number of Sequences: 18737 Number of extensions: 51520 Number of successful extensions: 1093 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1093 Number of HSP's gapped (non-prelim): 0 length of query: 2446 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2428 effective length of database: 40,933,732 effective search space: 99387101296 effective search space used: 99387101296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001827 BT001827|BT001827 Drosophila melanogaster RH44168 full insert cDNA. (2405 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13737-RB feature: mRNA loc=3L:join(13830656..13831068,13831519... 821 0.0 >CG13737-RB feature: mRNA loc=3L:join(13830656..13831068, 13831519..13831916);ID=FBan0013737;gene_id=FBgn0036382;g ene_sym=CG13737;sym=CG13737;scaffold=AE003536;len=811 Length = 811 Score = 821 bits (414), Expect = 0.0 Identities = 414/414 (100%) Strand = Plus / Minus Query: 571 cttcttatttgagttagagcgaaaagacgagctcttcaatcttttgatgaatgtttcccc 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 cttcttatttgagttagagcgaaaagacgagctcttcaatcttttgatgaatgtttcccc 355 Query: 631 tgtgagcaaacttcagcgggcccccacaacttgttgagtaagtgcggcaaaagtgaaagt 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 354 tgtgagcaaacttcagcgggcccccacaacttgttgagtaagtgcggcaaaagtgaaagt 295 Query: 691 aaacccaccgtcaaaaccccaatgtacggtgctatgtgtgttcggctagaagacaagaca 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 294 aaacccaccgtcaaaaccccaatgtacggtgctatgtgtgttcggctagaagacaagaca 235 Query: 751 agaaaattgcaataatttccgcaaaaggcgttcaaccgtatcacatgcagacagtcaagt 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 234 agaaaattgcaataatttccgcaaaaggcgttcaaccgtatcacatgcagacagtcaagt 175 Query: 811 tcagggcaagattttggatttcggttcgcaagaaattgatttcgatggctatggcagcgg 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 tcagggcaagattttggatttcggttcgcaagaaattgatttcgatggctatggcagcgg 115 Query: 871 ggaaatgagcagctaaacggcttgcgatccgcttgcttagccctgtttacacagctgaca 930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 114 ggaaatgagcagctaaacggcttgcgatccgcttgcttagccctgtttacacagctgaca 55 Query: 931 ccatttgggccggcttgaccgaccgatgaacgatggccaatggactggcggact 984 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 54 ccatttgggccggcttgaccgaccgatgaacgatggccaatggactggcggact 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 52,866 Number of Sequences: 18737 Number of extensions: 52866 Number of successful extensions: 1376 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1374 Number of HSP's gapped (non-prelim): 2 length of query: 2405 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2387 effective length of database: 40,933,732 effective search space: 97708818284 effective search space used: 97708818284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001834 BT001834|BT001834 Drosophila melanogaster RH48823 full insert cDNA. (2050 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value par-1-RD feature: mRNA loc=2R:join(14526704..14526819,14532510..... 1857 0.0 par-1-RC feature: mRNA loc=2R:join(14531234..14531361,14532510..... 1857 0.0 par-1-RO feature: mRNA loc=2R:join(14526254..14526363,14528030..... 1227 0.0 par-1-RJ feature: mRNA loc=2R:join(14526256..14526499,14528030..... 1227 0.0 par-1-RI feature: mRNA loc=2R:join(14526167..14526208,14528062..... 1227 0.0 par-1-RH feature: mRNA loc=2R:join(14526167..14526208,14528030..... 1227 0.0 par-1-RF feature: mRNA loc=2R:join(14526704..14526819,14532510..... 1227 0.0 par-1-RE feature: mRNA loc=2R:join(14526704..14526819,14532510..... 1227 0.0 par-1-RB feature: mRNA loc=2R:join(14519894..14520695,14523515..... 852 0.0 par-1-RA feature: mRNA loc=2R:join(14519894..14520695,14523515..... 850 0.0 par-1-RG feature: mRNA loc=2R:join(14531234..14531361,14532510..... 807 0.0 >par-1-RD feature: mRNA loc=2R:join(14526704..14526819,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5359 Length = 5359 Score = 1857 bits (937), Expect = 0.0 Identities = 937/937 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2867 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2926 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2927 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2986 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2987 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3046 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3047 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3106 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3107 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3166 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3167 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3226 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaaatggcatcggctg 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3227 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaaatggcatcggctg 3286 Query: 444 ttaaatcaagcagacactttccaaggaatgttccatcacgttcaacctttcactctggtc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3287 ttaaatcaagcagacactttccaaggaatgttccatcacgttcaacctttcactctggtc 3346 Query: 504 aaaccagagcacgaaacaacacagcgctggaatactcgggcaccagcggtgcctccggcg 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3347 aaaccagagcacgaaacaacacagcgctggaatactcgggcaccagcggtgcctccggcg 3406 Query: 564 actcctcccatccgggtcgcatgagcttcttctccaaactctcctcacgttttagcaaac 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3407 actcctcccatccgggtcgcatgagcttcttctccaaactctcctcacgttttagcaaac 3466 Query: 624 ggccaaaccagtaattaacaaaacaagcattaactacttcttgttaatagttctaaaact 683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3467 ggccaaaccagtaattaacaaaacaagcattaactacttcttgttaatagttctaaaact 3526 Query: 684 gaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggagaggttcagatatga 743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3527 gaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggagaggttcagatatga 3586 Query: 744 acagacagacacagatatggtcgaatccaatcggatcgctcggatcggatcagatcggga 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3587 acagacagacacagatatggtcgaatccaatcggatcgctcggatcggatcagatcggga 3646 Query: 804 aacgatactgttcacgttgccgttgccgatccgaaatcgctttcgaattccatttcgagt 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3647 aacgatactgttcacgttgccgttgccgatccgaaatcgctttcgaattccatttcgagt 3706 Query: 864 tcagatccgtttccggtttcgattcgaaccccttcaaatgaacaccgacaacgttgagtt 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3707 tcagatccgtttccggtttcgattcgaaccccttcaaatgaacaccgacaacgttgagtt 3766 Query: 924 ccgttgcgttaattgaaatttcacaaatacgcctatg 960 ||||||||||||||||||||||||||||||||||||| Sbjct: 3767 ccgttgcgttaattgaaatttcacaaatacgcctatg 3803 Score = 1227 bits (619), Expect = 0.0 Identities = 622/623 (99%) Strand = Plus / Plus Query: 1025 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3868 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 3927 Query: 1085 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3928 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 3987 Query: 1145 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactgagaaacaaagatat 1204 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3988 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactaagaaacaaagatat 4047 Query: 1205 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4048 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 4107 Query: 1265 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4108 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 4167 Query: 1325 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4168 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 4227 Query: 1385 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4228 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 4287 Query: 1445 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4288 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 4347 Query: 1505 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4348 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 4407 Query: 1565 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4408 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 4467 Query: 1625 ttaaattgtatccgtggatcata 1647 ||||||||||||||||||||||| Sbjct: 4468 ttaaattgtatccgtggatcata 4490 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1685 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4528 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 4587 Query: 1745 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 1804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4588 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 4647 Query: 1805 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4648 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 4707 Query: 1865 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 1924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4708 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 4767 Query: 1925 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4768 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 4827 Query: 1985 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 2034 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4828 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 4877 >par-1-RC feature: mRNA loc=2R:join(14531234..14531361,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5371 Length = 5371 Score = 1857 bits (937), Expect = 0.0 Identities = 937/937 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2879 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2938 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2939 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2998 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2999 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3058 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3059 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3118 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3119 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3178 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3179 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3238 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaaatggcatcggctg 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3239 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaaatggcatcggctg 3298 Query: 444 ttaaatcaagcagacactttccaaggaatgttccatcacgttcaacctttcactctggtc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3299 ttaaatcaagcagacactttccaaggaatgttccatcacgttcaacctttcactctggtc 3358 Query: 504 aaaccagagcacgaaacaacacagcgctggaatactcgggcaccagcggtgcctccggcg 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3359 aaaccagagcacgaaacaacacagcgctggaatactcgggcaccagcggtgcctccggcg 3418 Query: 564 actcctcccatccgggtcgcatgagcttcttctccaaactctcctcacgttttagcaaac 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3419 actcctcccatccgggtcgcatgagcttcttctccaaactctcctcacgttttagcaaac 3478 Query: 624 ggccaaaccagtaattaacaaaacaagcattaactacttcttgttaatagttctaaaact 683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3479 ggccaaaccagtaattaacaaaacaagcattaactacttcttgttaatagttctaaaact 3538 Query: 684 gaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggagaggttcagatatga 743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3539 gaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggagaggttcagatatga 3598 Query: 744 acagacagacacagatatggtcgaatccaatcggatcgctcggatcggatcagatcggga 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3599 acagacagacacagatatggtcgaatccaatcggatcgctcggatcggatcagatcggga 3658 Query: 804 aacgatactgttcacgttgccgttgccgatccgaaatcgctttcgaattccatttcgagt 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3659 aacgatactgttcacgttgccgttgccgatccgaaatcgctttcgaattccatttcgagt 3718 Query: 864 tcagatccgtttccggtttcgattcgaaccccttcaaatgaacaccgacaacgttgagtt 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3719 tcagatccgtttccggtttcgattcgaaccccttcaaatgaacaccgacaacgttgagtt 3778 Query: 924 ccgttgcgttaattgaaatttcacaaatacgcctatg 960 ||||||||||||||||||||||||||||||||||||| Sbjct: 3779 ccgttgcgttaattgaaatttcacaaatacgcctatg 3815 Score = 1227 bits (619), Expect = 0.0 Identities = 622/623 (99%) Strand = Plus / Plus Query: 1025 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3880 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 3939 Query: 1085 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3940 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 3999 Query: 1145 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactgagaaacaaagatat 1204 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 4000 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactaagaaacaaagatat 4059 Query: 1205 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4060 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 4119 Query: 1265 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4120 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 4179 Query: 1325 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4180 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 4239 Query: 1385 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4240 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 4299 Query: 1445 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4300 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 4359 Query: 1505 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4360 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 4419 Query: 1565 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4420 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 4479 Query: 1625 ttaaattgtatccgtggatcata 1647 ||||||||||||||||||||||| Sbjct: 4480 ttaaattgtatccgtggatcata 4502 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1685 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4540 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 4599 Query: 1745 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 1804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4600 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 4659 Query: 1805 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4660 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 4719 Query: 1865 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 1924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4720 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 4779 Query: 1925 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4780 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 4839 Query: 1985 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 2034 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4840 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 4889 >par-1-RO feature: mRNA loc=2R:join(14526254..14526363,14528030..14529414, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5303 Length = 5303 Score = 1227 bits (619), Expect = 0.0 Identities = 622/623 (99%) Strand = Plus / Plus Query: 1025 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3812 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 3871 Query: 1085 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3872 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 3931 Query: 1145 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactgagaaacaaagatat 1204 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3932 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactaagaaacaaagatat 3991 Query: 1205 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3992 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 4051 Query: 1265 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4052 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 4111 Query: 1325 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4112 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 4171 Query: 1385 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4172 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 4231 Query: 1445 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4232 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 4291 Query: 1505 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4292 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 4351 Query: 1565 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4352 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 4411 Query: 1625 ttaaattgtatccgtggatcata 1647 ||||||||||||||||||||||| Sbjct: 4412 ttaaattgtatccgtggatcata 4434 Score = 1053 bits (531), Expect = 0.0 Identities = 531/531 (100%) Strand = Plus / Plus Query: 430 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3217 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 3276 Query: 490 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3277 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 3336 Query: 550 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3337 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 3396 Query: 610 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3397 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 3456 Query: 670 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3457 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 3516 Query: 730 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3517 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 3576 Query: 790 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3577 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 3636 Query: 850 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3637 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 3696 Query: 910 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 960 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3697 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 3747 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2697 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2756 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2757 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2816 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2817 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 2876 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2877 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 2936 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2937 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 2996 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2997 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3056 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3057 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3102 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1685 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4472 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 4531 Query: 1745 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 1804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4532 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 4591 Query: 1805 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4592 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 4651 Query: 1865 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 1924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4652 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 4711 Query: 1925 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4712 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 4771 Query: 1985 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 2034 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4772 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 4821 >par-1-RJ feature: mRNA loc=2R:join(14526256..14526499,14528030..14529414, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5437 Length = 5437 Score = 1227 bits (619), Expect = 0.0 Identities = 622/623 (99%) Strand = Plus / Plus Query: 1025 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3946 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 4005 Query: 1085 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4006 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 4065 Query: 1145 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactgagaaacaaagatat 1204 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 4066 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactaagaaacaaagatat 4125 Query: 1205 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4126 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 4185 Query: 1265 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4186 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 4245 Query: 1325 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4246 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 4305 Query: 1385 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4306 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 4365 Query: 1445 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4366 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 4425 Query: 1505 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4426 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 4485 Query: 1565 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4486 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 4545 Query: 1625 ttaaattgtatccgtggatcata 1647 ||||||||||||||||||||||| Sbjct: 4546 ttaaattgtatccgtggatcata 4568 Score = 1053 bits (531), Expect = 0.0 Identities = 531/531 (100%) Strand = Plus / Plus Query: 430 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3351 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 3410 Query: 490 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3411 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 3470 Query: 550 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3471 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 3530 Query: 610 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3531 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 3590 Query: 670 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3591 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 3650 Query: 730 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3651 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 3710 Query: 790 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3711 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 3770 Query: 850 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3771 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 3830 Query: 910 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 960 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3831 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 3881 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2831 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2890 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2891 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2950 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2951 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3010 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3011 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3070 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3071 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3130 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3131 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3190 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3191 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3236 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1685 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4606 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 4665 Query: 1745 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 1804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4666 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 4725 Query: 1805 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4726 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 4785 Query: 1865 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 1924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4786 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 4845 Query: 1925 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4846 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 4905 Query: 1985 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 2034 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4906 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 4955 >par-1-RI feature: mRNA loc=2R:join(14526167..14526208,14528062..14529414, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5203 Length = 5203 Score = 1227 bits (619), Expect = 0.0 Identities = 622/623 (99%) Strand = Plus / Plus Query: 1025 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3712 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 3771 Query: 1085 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3772 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 3831 Query: 1145 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactgagaaacaaagatat 1204 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3832 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactaagaaacaaagatat 3891 Query: 1205 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3892 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 3951 Query: 1265 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3952 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 4011 Query: 1325 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4012 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 4071 Query: 1385 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4072 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 4131 Query: 1445 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4132 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 4191 Query: 1505 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4192 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 4251 Query: 1565 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4252 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 4311 Query: 1625 ttaaattgtatccgtggatcata 1647 ||||||||||||||||||||||| Sbjct: 4312 ttaaattgtatccgtggatcata 4334 Score = 1053 bits (531), Expect = 0.0 Identities = 531/531 (100%) Strand = Plus / Plus Query: 430 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3117 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 3176 Query: 490 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3177 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 3236 Query: 550 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3237 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 3296 Query: 610 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3297 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 3356 Query: 670 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3357 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 3416 Query: 730 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3417 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 3476 Query: 790 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3477 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 3536 Query: 850 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3537 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 3596 Query: 910 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 960 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3597 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 3647 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2597 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2656 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2657 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2716 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2717 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 2776 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2777 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 2836 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2837 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 2896 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2897 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 2956 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2957 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3002 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1685 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4372 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 4431 Query: 1745 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 1804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4432 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 4491 Query: 1805 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4492 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 4551 Query: 1865 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 1924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4552 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 4611 Query: 1925 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4612 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 4671 Query: 1985 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 2034 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4672 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 4721 >par-1-RH feature: mRNA loc=2R:join(14526167..14526208,14528030..14529414, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5235 Length = 5235 Score = 1227 bits (619), Expect = 0.0 Identities = 622/623 (99%) Strand = Plus / Plus Query: 1025 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3744 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 3803 Query: 1085 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3804 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 3863 Query: 1145 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactgagaaacaaagatat 1204 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3864 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactaagaaacaaagatat 3923 Query: 1205 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3924 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 3983 Query: 1265 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3984 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 4043 Query: 1325 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4044 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 4103 Query: 1385 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4104 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 4163 Query: 1445 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4164 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 4223 Query: 1505 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4224 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 4283 Query: 1565 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4284 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 4343 Query: 1625 ttaaattgtatccgtggatcata 1647 ||||||||||||||||||||||| Sbjct: 4344 ttaaattgtatccgtggatcata 4366 Score = 1053 bits (531), Expect = 0.0 Identities = 531/531 (100%) Strand = Plus / Plus Query: 430 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3149 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 3208 Query: 490 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3209 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 3268 Query: 550 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3269 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 3328 Query: 610 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3329 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 3388 Query: 670 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3389 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 3448 Query: 730 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3449 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 3508 Query: 790 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3509 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 3568 Query: 850 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3569 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 3628 Query: 910 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 960 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3629 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 3679 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2629 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2688 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2689 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2748 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2749 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 2808 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2809 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 2868 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2869 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 2928 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2929 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 2988 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2989 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3034 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1685 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4404 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 4463 Query: 1745 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 1804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4464 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 4523 Query: 1805 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4524 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 4583 Query: 1865 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 1924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4584 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 4643 Query: 1925 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4644 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 4703 Query: 1985 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 2034 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4704 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 4753 >par-1-RF feature: mRNA loc=2R:join(14526704..14526819,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14538248..14538361,14541354..14541424,14542462..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5473 Length = 5473 Score = 1227 bits (619), Expect = 0.0 Identities = 622/623 (99%) Strand = Plus / Plus Query: 1025 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3982 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 4041 Query: 1085 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4042 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 4101 Query: 1145 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactgagaaacaaagatat 1204 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 4102 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactaagaaacaaagatat 4161 Query: 1205 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4162 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 4221 Query: 1265 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4222 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 4281 Query: 1325 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4282 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 4341 Query: 1385 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4342 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 4401 Query: 1445 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4402 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 4461 Query: 1505 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4462 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 4521 Query: 1565 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4522 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 4581 Query: 1625 ttaaattgtatccgtggatcata 1647 ||||||||||||||||||||||| Sbjct: 4582 ttaaattgtatccgtggatcata 4604 Score = 1053 bits (531), Expect = 0.0 Identities = 531/531 (100%) Strand = Plus / Plus Query: 430 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3387 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 3446 Query: 490 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3447 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 3506 Query: 550 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3507 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 3566 Query: 610 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3567 acgttttagcaaacggccaaaccagtaattaacaaaacaagcattaactacttcttgtta 3626 Query: 670 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3627 atagttctaaaactgaaactgaaacaaacgattcccctagagtaaacgcgcgtgacggag 3686 Query: 730 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3687 aggttcagatatgaacagacagacacagatatggtcgaatccaatcggatcgctcggatc 3746 Query: 790 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3747 ggatcagatcgggaaacgatactgttcacgttgccgttgccgatccgaaatcgctttcga 3806 Query: 850 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3807 attccatttcgagttcagatccgtttccggtttcgattcgaaccccttcaaatgaacacc 3866 Query: 910 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 960 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3867 gacaacgttgagttccgttgcgttaattgaaatttcacaaatacgcctatg 3917 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2867 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2926 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2927 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2986 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2987 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3046 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3047 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3106 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3107 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3166 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3167 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3226 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 429 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3227 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaa 3272 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1685 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4642 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 4701 Query: 1745 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 1804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4702 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 4761 Query: 1805 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4762 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 4821 Query: 1865 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 1924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4822 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 4881 Query: 1925 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4882 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 4941 Query: 1985 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 2034 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4942 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 4991 >par-1-RE feature: mRNA loc=2R:join(14526704..14526819,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14542472..14542585, 14544871..14546762);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=5278 Length = 5278 Score = 1227 bits (619), Expect = 0.0 Identities = 622/623 (99%) Strand = Plus / Plus Query: 1025 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3787 tatttaaaagtaaagcaaccacaaacagaaattacgaaaccctttgttttcattgtttgt 3846 Query: 1085 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3847 aaaacgatgcgaggagcgaccgcgaccagcaaaaggcaatacaaaataaataatgaatta 3906 Query: 1145 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactgagaaacaaagatat 1204 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3907 tacaaattaaaaccgaaacgaaaccgatacaaacagaaatccactaagaaacaaagatat 3966 Query: 1205 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3967 gataaatgcaatgatcagaaagaatcctgactaccattgctgtcactgtcacgattatgg 4026 Query: 1265 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4027 attatattaactactaaatattacacctacgagtactacctaaactacatatatatttat 4086 Query: 1325 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4087 gttaaatgcgtatcgcaattatagttatacaaacaaacaaatatcactgatgaagtgaac 4146 Query: 1385 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4147 gtgagatataactgcaaaaagtaaaattaacttaagcctaactcaactaaaacgatctaa 4206 Query: 1445 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4207 actgaactaaagtgcgtggtgttttcgcccaaatcattattttatagtagccacaataaa 4266 Query: 1505 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4267 acaccaaaagaagttgctaattttgtaacgatgatcttgaattttatttagcgatctttg 4326 Query: 1565 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4327 tatttatatgtatgtgtatgtatgtatggatctgtatttgtatttcgatatgagcttgaa 4386 Query: 1625 ttaaattgtatccgtggatcata 1647 ||||||||||||||||||||||| Sbjct: 4387 ttaaattgtatccgtggatcata 4409 Score = 892 bits (450), Expect = 0.0 Identities = 450/450 (100%) Strand = Plus / Plus Query: 511 agcacgaaacaacacagcgctggaatactcgggcaccagcggtgcctccggcgactcctc 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3273 agcacgaaacaacacagcgctggaatactcgggcaccagcggtgcctccggcgactcctc 3332 Query: 571 ccatccgggtcgcatgagcttcttctccaaactctcctcacgttttagcaaacggccaaa 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3333 ccatccgggtcgcatgagcttcttctccaaactctcctcacgttttagcaaacggccaaa 3392 Query: 631 ccagtaattaacaaaacaagcattaactacttcttgttaatagttctaaaactgaaactg 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3393 ccagtaattaacaaaacaagcattaactacttcttgttaatagttctaaaactgaaactg 3452 Query: 691 aaacaaacgattcccctagagtaaacgcgcgtgacggagaggttcagatatgaacagaca 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3453 aaacaaacgattcccctagagtaaacgcgcgtgacggagaggttcagatatgaacagaca 3512 Query: 751 gacacagatatggtcgaatccaatcggatcgctcggatcggatcagatcgggaaacgata 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3513 gacacagatatggtcgaatccaatcggatcgctcggatcggatcagatcgggaaacgata 3572 Query: 811 ctgttcacgttgccgttgccgatccgaaatcgctttcgaattccatttcgagttcagatc 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3573 ctgttcacgttgccgttgccgatccgaaatcgctttcgaattccatttcgagttcagatc 3632 Query: 871 cgtttccggtttcgattcgaaccccttcaaatgaacaccgacaacgttgagttccgttgc 930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3633 cgtttccggtttcgattcgaaccccttcaaatgaacaccgacaacgttgagttccgttgc 3692 Query: 931 gttaattgaaatttcacaaatacgcctatg 960 |||||||||||||||||||||||||||||| Sbjct: 3693 gttaattgaaatttcacaaatacgcctatg 3722 Score = 807 bits (407), Expect = 0.0 Identities = 407/407 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2867 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2926 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2927 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2986 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2987 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3046 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3047 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3106 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3107 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3166 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3167 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3226 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaa 430 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3227 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaa 3273 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1685 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4447 gcagccagccaacaaactaacgatcttgcaattcataatcacccagaagccagatgtgca 4506 Query: 1745 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 1804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4507 gcgtatctagtaattaagcataccacgtagtcactaaaaaacaatacaaagcgatacatg 4566 Query: 1805 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4567 aaaaccaatttaacttaaattcaaggaataacaatgtattaccactagtgcatgtgacca 4626 Query: 1865 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 1924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4627 ttttatttgtacagctgattatctatagatcgtgttatcatcgggcgccttcagtggctc 4686 Query: 1925 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4687 gatcagtagttatctatacatattaagtttcaaagaaataacgcataattaaaacaattg 4746 Query: 1985 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 2034 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4747 ataatttaataaatccataataaacgatgtgaaacatttgcgagcaaaag 4796 >par-1-RB feature: mRNA loc=2R:join(14519894..14520695,14523515..14524336, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536884, 14537160..14537274,14537333..14537460,14537525..14537687, 14542472..14542585,14546672..14546821,14546888..14547006, 14547069..14548194);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=4725 Length = 4725 Score = 852 bits (430), Expect = 0.0 Identities = 430/430 (100%) Strand = Plus / Plus Query: 1 gccaagtcgccgagcctcgtctggtgttggaccgacaaatgcggcagcaacagttgcggc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2788 gccaagtcgccgagcctcgtctggtgttggaccgacaaatgcggcagcaacagttgcggc 2847 Query: 61 ggccacgggagccgttggtgcggttaatccaagcaataactacaatgctgcaggatcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2848 ggccacgggagccgttggtgcggttaatccaagcaataactacaatgctgcaggatcagc 2907 Query: 121 ggcggatcgagcatcagttggcagcaactttaagcgacagaacacaatcgactcggctac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2908 ggcggatcgagcatcagttggcagcaactttaagcgacagaacacaatcgactcggctac 2967 Query: 181 gattaaggagaacacagcgcgactggccgctcaaaatcagagacccgcttcggccacaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2968 gattaaggagaacacagcgcgactggccgctcaaaatcagagacccgcttcggccacaca 3027 Query: 241 aaagatgctcaccacggcagacaccacactgaacagtcccgccaagccgcgaacggcaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3028 aaagatgctcaccacggcagacaccacactgaacagtcccgccaagccgcgaacggcaac 3087 Query: 301 gaagtacgatccgacgaatggcaatcgcacggtcagcggcacaagtggcatcattccacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3088 gaagtacgatccgacgaatggcaatcgcacggtcagcggcacaagtggcatcattccacg 3147 Query: 361 tcgctccaccacgctttatgaaaagacttcgtcgacggagaaaaccaacgttattcctgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3148 tcgctccaccacgctttatgaaaagacttcgtcgacggagaaaaccaacgttattcctgc 3207 Query: 421 agagacaaaa 430 |||||||||| Sbjct: 3208 agagacaaaa 3217 >par-1-RA feature: mRNA loc=2R:join(14519894..14520695,14523515..14524336, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536884, 14537160..14537274,14537333..14537460,14537525..14537687, 14541336..14541424,14542462..14542585,14546672..14546821, 14546888..14547006, 14547069..14548194);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=4824 Length = 4824 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Plus Query: 1 gccaagtcgccgagcctcgtctggtgttggaccgacaaatgcggcagcaacagttgcggc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2788 gccaagtcgccgagcctcgtctggtgttggaccgacaaatgcggcagcaacagttgcggc 2847 Query: 61 ggccacgggagccgttggtgcggttaatccaagcaataactacaatgctgcaggatcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2848 ggccacgggagccgttggtgcggttaatccaagcaataactacaatgctgcaggatcagc 2907 Query: 121 ggcggatcgagcatcagttggcagcaactttaagcgacagaacacaatcgactcggctac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2908 ggcggatcgagcatcagttggcagcaactttaagcgacagaacacaatcgactcggctac 2967 Query: 181 gattaaggagaacacagcgcgactggccgctcaaaatcagagacccgcttcggccacaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2968 gattaaggagaacacagcgcgactggccgctcaaaatcagagacccgcttcggccacaca 3027 Query: 241 aaagatgctcaccacggcagacaccacactgaacagtcccgccaagccgcgaacggcaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3028 aaagatgctcaccacggcagacaccacactgaacagtcccgccaagccgcgaacggcaac 3087 Query: 301 gaagtacgatccgacgaatggcaatcgcacggtcagcggcacaagtggcatcattccacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3088 gaagtacgatccgacgaatggcaatcgcacggtcagcggcacaagtggcatcattccacg 3147 Query: 361 tcgctccaccacgctttatgaaaagacttcgtcgacggagaaaaccaacgttattcctgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3148 tcgctccaccacgctttatgaaaagacttcgtcgacggagaaaaccaacgttattcctgc 3207 Query: 421 agagacaaa 429 ||||||||| Sbjct: 3208 agagacaaa 3216 Score = 387 bits (195), Expect = e-106 Identities = 195/195 (100%) Strand = Plus / Plus Query: 430 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3235 aatggcatcggctgttaaatcaagcagacactttccaaggaatgttccatcacgttcaac 3294 Query: 490 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3295 ctttcactctggtcaaaccagagcacgaaacaacacagcgctggaatactcgggcaccag 3354 Query: 550 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3355 cggtgcctccggcgactcctcccatccgggtcgcatgagcttcttctccaaactctcctc 3414 Query: 610 acgttttagcaaacg 624 ||||||||||||||| Sbjct: 3415 acgttttagcaaacg 3429 >par-1-RG feature: mRNA loc=2R:join(14531234..14531361,14532510..14534058, 14534317..14534532,14534592..14534812,14534929..14535210, 14535272..14535456,14536539..14536651,14536716..14536899, 14537160..14537274,14537333..14537460,14537525..14537687, 14542472..14542585,14546672..14546821,14546888..14547006, 14547069..14548194);ID=FBan0008201;gene_id=FBgn0050132;ge ne_sym=par-1;sym=CG8201;scaffold=AE003795;len=4793 Length = 4793 Score = 807 bits (407), Expect = 0.0 Identities = 407/407 (100%) Strand = Plus / Plus Query: 24 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2879 gtgttggaccgacaaatgcggcagcaacagttgcggcggccacgggagccgttggtgcgg 2938 Query: 84 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2939 ttaatccaagcaataactacaatgctgcaggatcagcggcggatcgagcatcagttggca 2998 Query: 144 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2999 gcaactttaagcgacagaacacaatcgactcggctacgattaaggagaacacagcgcgac 3058 Query: 204 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3059 tggccgctcaaaatcagagacccgcttcggccacacaaaagatgctcaccacggcagaca 3118 Query: 264 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3119 ccacactgaacagtcccgccaagccgcgaacggcaacgaagtacgatccgacgaatggca 3178 Query: 324 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3179 atcgcacggtcagcggcacaagtggcatcattccacgtcgctccaccacgctttatgaaa 3238 Query: 384 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaa 430 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3239 agacttcgtcgacggagaaaaccaacgttattcctgcagagacaaaa 3285 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 49,984 Number of Sequences: 18737 Number of extensions: 49984 Number of successful extensions: 1613 Number of sequences better than 1.0e-100: 11 Number of HSP's better than 0.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1568 Number of HSP's gapped (non-prelim): 45 length of query: 2050 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2032 effective length of database: 40,933,732 effective search space: 83177343424 effective search space used: 83177343424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001835 BT001835|BT001835 Drosophila melanogaster RH49003 full insert cDNA. (710 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390... 1366 0.0 CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390... 1106 0.0 CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386... 801 0.0 CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386... 801 0.0 >CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=714 Length = 714 Score = 1366 bits (689), Expect = 0.0 Identities = 692/693 (99%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggca 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggca 420 Query: 422 acgttaagtgcgtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatc 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acgttaagtgcgtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatc 480 Query: 482 catacgactacatgcattaaaactaactcaggtagccaatattcttgttgactaacagtg 541 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 481 catacgactacatgcattaaaactaactcagatagccaatattcttgttgactaacagtg 540 Query: 542 aactaaaccaaatcaaatggaactgcacgctctgcccaatgttaatttataatcgcaccc 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 aactaaaccaaatcaaatggaactgcacgctctgcccaatgttaatttataatcgcaccc 600 Query: 602 gtacacccgcagtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaat 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gtacacccgcagtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaat 660 Query: 662 gcatttgaataaactattacttgaagtgctttt 694 ||||||||||||||||||||||||||||||||| Sbjct: 661 gcatttgaataaactattacttgaagtgctttt 693 >CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7390524..7390851, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gene _sym=CG31305;sym=CG31305;scaffold=AE003692;len=1042 Length = 1042 Score = 1106 bits (558), Expect = 0.0 Identities = 561/562 (99%) Strand = Plus / Plus Query: 133 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 519 Query: 193 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 579 Query: 253 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 639 Query: 313 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 699 Query: 373 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 759 Query: 433 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 819 Query: 493 atgcattaaaactaactcaggtagccaatattcttgttgactaacagtgaactaaaccaa 552 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 820 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 879 Query: 553 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 939 Query: 613 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 999 Query: 673 aactattacttgaagtgctttt 694 |||||||||||||||||||||| Sbjct: 1000 aactattacttgaagtgctttt 1021 >CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 801 bits (404), Expect = 0.0 Identities = 404/404 (100%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 405 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 404 >CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 801 bits (404), Expect = 0.0 Identities = 404/404 (100%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctgggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacag 180 Query: 182 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggaggtgaccttggagggcgatacctacaccctgactaccacctccaccttcaagacct 240 Query: 242 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctgccatcagcttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacg 300 Query: 302 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaagagcatcatcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagc 360 Query: 362 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 405 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccaccaccatcgtccgcgagttcaccgacaacgagctgatcacc 404 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,393 Number of Sequences: 18737 Number of extensions: 18393 Number of successful extensions: 519 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 514 Number of HSP's gapped (non-prelim): 5 length of query: 710 length of database: 41,270,998 effective HSP length: 17 effective length of query: 693 effective length of database: 40,952,469 effective search space: 28380061017 effective search space used: 28380061017 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001847 BT001847|BT001847 Drosophila melanogaster RH56396 full insert cDNA. (4324 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 93,095 Number of Sequences: 18737 Number of extensions: 93095 Number of successful extensions: 2106 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2106 Number of HSP's gapped (non-prelim): 0 length of query: 4324 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4305 effective length of database: 40,914,995 effective search space: 176139053475 effective search space used: 176139053475 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001851 BT001851|BT001851 Drosophila melanogaster RH59222 full insert cDNA. (2872 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33156-RE feature: mRNA loc=2R:complement(8611857..8613608,8613... 1039 0.0 CG33156-RC feature: mRNA loc=2R:complement(8611857..8613608,8613... 1039 0.0 CG33156-RB feature: mRNA loc=2R:complement(8611857..8613608,8613... 1039 0.0 CG33156-RA feature: mRNA loc=2R:complement(8611857..8613608,8613... 1039 0.0 CG6145-RA feature: mRNA loc=2R:complement(8602083..8602763,86029... 924 0.0 >CG33156-RE feature: mRNA loc=2R:complement(8611857..8613608,8613668..8614250, 8614313..8614630, 8615387..8616161);ID=FBan0033156;gene_id=FBgn0053156;gene _sym=CG33156;sym=CG33156;scaffold=AE003818;len=3428 Length = 3428 Score = 1039 bits (524), Expect = 0.0 Identities = 541/549 (98%) Strand = Plus / Minus Query: 2308 ttgttgggttttcaagtttactggcttatatgtttaaataataggtataccaatgatttg 2367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3428 ttgttgggttttcaagtttactggcttatatgtttaaataataggtataccaatgatttg 3369 Query: 2368 cttggcaaccgaaataaaaccatctaggttcgtacaattaaagtatttgagttacactga 2427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3368 cttggcaaccgaaataaaaccatctaggttcgtacaattaaagtatttgagttacactga 3309 Query: 2428 atatnnnnnnntgaaaagcttcctaaaactatatacaaaacttaatttttcttgttcatt 2487 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3308 atataaaaaaatgaaaagcttcctaaaactatatacaaaacttaatttttcttgttcatt 3249 Query: 2488 agcacttcataaaagtattcttaagttattttaaaaaccttttttcatttaaagacatta 2547 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 3248 agcacttcataaaagtattcttaagttattttaaaaactttttttcatttaaagacatta 3189 Query: 2548 cacctctactcaagtttaaaattgaaaaatgcctggcacttcaaggacatttttcgctac 2607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3188 cacctctactcaagtttaaaattgaaaaatgcctggcacttcaaggacatttttcgctac 3129 Query: 2608 aacttaccgaaactgagttcgcttttccagcaaactgattggcagtgctttccttagcgg 2667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3128 aacttaccgaaactgagttcgcttttccagcaaactgattggcagtgctttccttagcgg 3069 Query: 2668 agctggcgaactcccaggcgtagaggcgtctccattggccatttcacgcgcccgctgcat 2727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3068 agctggcgaactcccaggcgtagaggcgtctccattggccatttcacgcgcccgctgcat 3009 Query: 2728 atcttcgggattcatttcgaacttaattacaaccgttcgctggcaacgttcgccatcaac 2787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3008 atcttcgggattcatttcgaacttaattacaaccgttcgctggcaacgttcgccatcaac 2949 Query: 2788 tacgctcagattttatgcagttcacacgaccagataggcacgcatcgcacacctgccgca 2847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2948 tacgctcagattttatgcagttcacacgaccagataggcacgcatcgcacacctgccgca 2889 Query: 2848 cgcacacgc 2856 ||||||||| Sbjct: 2888 cgcacacgc 2880 >CG33156-RC feature: mRNA loc=2R:complement(8611857..8613608,8613668..8614250, 8614313..8614630, 8616666..8617120);ID=FBan0033156;gene_id=FBgn0053156;gene _sym=CG33156;sym=CG33156;scaffold=AE003818;len=3108 Length = 3108 Score = 1039 bits (524), Expect = 0.0 Identities = 541/549 (98%) Strand = Plus / Minus Query: 2308 ttgttgggttttcaagtttactggcttatatgtttaaataataggtataccaatgatttg 2367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3108 ttgttgggttttcaagtttactggcttatatgtttaaataataggtataccaatgatttg 3049 Query: 2368 cttggcaaccgaaataaaaccatctaggttcgtacaattaaagtatttgagttacactga 2427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3048 cttggcaaccgaaataaaaccatctaggttcgtacaattaaagtatttgagttacactga 2989 Query: 2428 atatnnnnnnntgaaaagcttcctaaaactatatacaaaacttaatttttcttgttcatt 2487 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2988 atataaaaaaatgaaaagcttcctaaaactatatacaaaacttaatttttcttgttcatt 2929 Query: 2488 agcacttcataaaagtattcttaagttattttaaaaaccttttttcatttaaagacatta 2547 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2928 agcacttcataaaagtattcttaagttattttaaaaactttttttcatttaaagacatta 2869 Query: 2548 cacctctactcaagtttaaaattgaaaaatgcctggcacttcaaggacatttttcgctac 2607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2868 cacctctactcaagtttaaaattgaaaaatgcctggcacttcaaggacatttttcgctac 2809 Query: 2608 aacttaccgaaactgagttcgcttttccagcaaactgattggcagtgctttccttagcgg 2667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2808 aacttaccgaaactgagttcgcttttccagcaaactgattggcagtgctttccttagcgg 2749 Query: 2668 agctggcgaactcccaggcgtagaggcgtctccattggccatttcacgcgcccgctgcat 2727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2748 agctggcgaactcccaggcgtagaggcgtctccattggccatttcacgcgcccgctgcat 2689 Query: 2728 atcttcgggattcatttcgaacttaattacaaccgttcgctggcaacgttcgccatcaac 2787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2688 atcttcgggattcatttcgaacttaattacaaccgttcgctggcaacgttcgccatcaac 2629 Query: 2788 tacgctcagattttatgcagttcacacgaccagataggcacgcatcgcacacctgccgca 2847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2628 tacgctcagattttatgcagttcacacgaccagataggcacgcatcgcacacctgccgca 2569 Query: 2848 cgcacacgc 2856 ||||||||| Sbjct: 2568 cgcacacgc 2560 >CG33156-RB feature: mRNA loc=2R:complement(8611857..8613608,8613668..8614250, 8614313..8614630, 8614701..8614989);ID=FBan0033156;gene_id=FBgn0053156;gene _sym=CG33156;sym=CG33156;scaffold=AE003818;len=2942 Length = 2942 Score = 1039 bits (524), Expect = 0.0 Identities = 541/549 (98%) Strand = Plus / Minus Query: 2308 ttgttgggttttcaagtttactggcttatatgtttaaataataggtataccaatgatttg 2367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2942 ttgttgggttttcaagtttactggcttatatgtttaaataataggtataccaatgatttg 2883 Query: 2368 cttggcaaccgaaataaaaccatctaggttcgtacaattaaagtatttgagttacactga 2427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2882 cttggcaaccgaaataaaaccatctaggttcgtacaattaaagtatttgagttacactga 2823 Query: 2428 atatnnnnnnntgaaaagcttcctaaaactatatacaaaacttaatttttcttgttcatt 2487 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2822 atataaaaaaatgaaaagcttcctaaaactatatacaaaacttaatttttcttgttcatt 2763 Query: 2488 agcacttcataaaagtattcttaagttattttaaaaaccttttttcatttaaagacatta 2547 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2762 agcacttcataaaagtattcttaagttattttaaaaactttttttcatttaaagacatta 2703 Query: 2548 cacctctactcaagtttaaaattgaaaaatgcctggcacttcaaggacatttttcgctac 2607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2702 cacctctactcaagtttaaaattgaaaaatgcctggcacttcaaggacatttttcgctac 2643 Query: 2608 aacttaccgaaactgagttcgcttttccagcaaactgattggcagtgctttccttagcgg 2667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2642 aacttaccgaaactgagttcgcttttccagcaaactgattggcagtgctttccttagcgg 2583 Query: 2668 agctggcgaactcccaggcgtagaggcgtctccattggccatttcacgcgcccgctgcat 2727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2582 agctggcgaactcccaggcgtagaggcgtctccattggccatttcacgcgcccgctgcat 2523 Query: 2728 atcttcgggattcatttcgaacttaattacaaccgttcgctggcaacgttcgccatcaac 2787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2522 atcttcgggattcatttcgaacttaattacaaccgttcgctggcaacgttcgccatcaac 2463 Query: 2788 tacgctcagattttatgcagttcacacgaccagataggcacgcatcgcacacctgccgca 2847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2462 tacgctcagattttatgcagttcacacgaccagataggcacgcatcgcacacctgccgca 2403 Query: 2848 cgcacacgc 2856 ||||||||| Sbjct: 2402 cgcacacgc 2394 >CG33156-RA feature: mRNA loc=2R:complement(8611857..8613608,8613668..8614250, 8614313..8614630, 8616822..8617120);ID=FBan0033156;gene_id=FBgn0053156;gene _sym=CG33156;sym=CG33156;scaffold=AE003818;len=2952 Length = 2952 Score = 1039 bits (524), Expect = 0.0 Identities = 541/549 (98%) Strand = Plus / Minus Query: 2308 ttgttgggttttcaagtttactggcttatatgtttaaataataggtataccaatgatttg 2367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2952 ttgttgggttttcaagtttactggcttatatgtttaaataataggtataccaatgatttg 2893 Query: 2368 cttggcaaccgaaataaaaccatctaggttcgtacaattaaagtatttgagttacactga 2427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2892 cttggcaaccgaaataaaaccatctaggttcgtacaattaaagtatttgagttacactga 2833 Query: 2428 atatnnnnnnntgaaaagcttcctaaaactatatacaaaacttaatttttcttgttcatt 2487 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2832 atataaaaaaatgaaaagcttcctaaaactatatacaaaacttaatttttcttgttcatt 2773 Query: 2488 agcacttcataaaagtattcttaagttattttaaaaaccttttttcatttaaagacatta 2547 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2772 agcacttcataaaagtattcttaagttattttaaaaactttttttcatttaaagacatta 2713 Query: 2548 cacctctactcaagtttaaaattgaaaaatgcctggcacttcaaggacatttttcgctac 2607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2712 cacctctactcaagtttaaaattgaaaaatgcctggcacttcaaggacatttttcgctac 2653 Query: 2608 aacttaccgaaactgagttcgcttttccagcaaactgattggcagtgctttccttagcgg 2667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2652 aacttaccgaaactgagttcgcttttccagcaaactgattggcagtgctttccttagcgg 2593 Query: 2668 agctggcgaactcccaggcgtagaggcgtctccattggccatttcacgcgcccgctgcat 2727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2592 agctggcgaactcccaggcgtagaggcgtctccattggccatttcacgcgcccgctgcat 2533 Query: 2728 atcttcgggattcatttcgaacttaattacaaccgttcgctggcaacgttcgccatcaac 2787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2532 atcttcgggattcatttcgaacttaattacaaccgttcgctggcaacgttcgccatcaac 2473 Query: 2788 tacgctcagattttatgcagttcacacgaccagataggcacgcatcgcacacctgccgca 2847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2472 tacgctcagattttatgcagttcacacgaccagataggcacgcatcgcacacctgccgca 2413 Query: 2848 cgcacacgc 2856 ||||||||| Sbjct: 2412 cgcacacgc 2404 >CG6145-RA feature: mRNA loc=2R:complement(8602083..8602763,8602912..8603569, 8603686..8604063, 8611229..8611702);ID=FBan0006145;gene_id=FBgn0033853;gene _sym=CG6145;sym=CG6145;scaffold=AE003818;len=2191 Length = 2191 Score = 924 bits (466), Expect = 0.0 Identities = 469/470 (99%) Strand = Plus / Minus Query: 1679 ccaccacatacgcatctggaggtcatcgctggcagtgccgttattcaggtcaggacccgg 1738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 ccaccacatacgcatctggaggtcatcgctggcagtgccgttattcaggtcaggacccgg 416 Query: 1739 tgctgatgatgctgcagtgcctccttgtccctgtcgtatgctgttcacatggagcagctg 1798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 tgctgatgatgctgcagtgcctccttgtccctgtcgtatgctgttcacatggagcagctg 356 Query: 1799 attgtcgtggtcgtcgtagtaggatccattgcactgggaggccgacttcggcaccgtttg 1858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 attgtcgtggtcgtcgtagtaggatccattgcactgggaggccgacttcggcaccgtttg 296 Query: 1859 cgcggccgacggggtggtcgttggggctgggttaaccgttatggagctagaggacttcat 1918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 cgcggccgacggggtggtcgttggggctgggttaaccgttatggagctagaggacttcat 236 Query: 1919 tgttttggccacctgcttgtagctgtatgtgtgtatatctgtgactgcgcacctatgtgt 1978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 tgttttggccacctgcttgtagctgtatgtgtgtatatctgtgactgcgcacctatgtgt 176 Query: 1979 gcgccaatgtgagtgatgtgttgtgttggcctcaacttgacccactaacgcgttgcacct 2038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 gcgccaatgtgagtgatgtgttgtgttggcctcaacttgacccactaacgcgttgcacct 116 Query: 2039 gccgacgacacccactttcgatggacaacttcccggttttgggctaggcggcgactagct 2098 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 115 gccgacgacacccactttcgatggacaacttcccgattttgggctaggcggcgactagct 56 Query: 2099 cctgatttgcaatttcacgaacgcgagtttcaatgggtccatgttatttg 2148 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55 cctgatttgcaatttcacgaacgcgagtttcaatgggtccatgttatttg 6 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 60,328 Number of Sequences: 18737 Number of extensions: 60328 Number of successful extensions: 1438 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1425 Number of HSP's gapped (non-prelim): 9 length of query: 2872 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2853 effective length of database: 40,914,995 effective search space: 116730480735 effective search space used: 116730480735 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT001880 BT001880|BT001880 Drosophila melanogaster SD12036 full insert cDNA. (796 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390... 1366 0.0 CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390... 1156 0.0 CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386... 751 0.0 CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386... 751 0.0 >CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=714 Length = 714 Score = 1366 bits (689), Expect = 0.0 Identities = 689/689 (100%) Strand = Plus / Plus Query: 1 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 85 Query: 61 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 145 Query: 121 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 205 Query: 181 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 265 Query: 241 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 325 Query: 301 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 385 Query: 361 cgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgcgtgcgcgtctacaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 cgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgcgtgcgcgtctacaa 445 Query: 421 ggccgtctaagagactgatctaaaactataatatccatacgactacatgcattaaaacta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 ggccgtctaagagactgatctaaaactataatatccatacgactacatgcattaaaacta 505 Query: 481 actcagatagccaatattcttgttgactaacagtgaactaaaccaaatcaaatggaactg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 actcagatagccaatattcttgttgactaacagtgaactaaaccaaatcaaatggaactg 565 Query: 541 cacgctctgcccaatgttaatttataatcgcacccgtacacccgcagtcggtgtatgtgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 cacgctctgcccaatgttaatttataatcgcacccgtacacccgcagtcggtgtatgtgg 625 Query: 601 gaatactcctcgtactcggggaccaatttccgaatgcatttgaataaactattacttgaa 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 gaatactcctcgtactcggggaccaatttccgaatgcatttgaataaactattacttgaa 685 Query: 661 gtgcttttaaaacattccgactttctttt 689 ||||||||||||||||||||||||||||| Sbjct: 686 gtgcttttaaaacattccgactttctttt 714 >CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7390524..7390851, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gene _sym=CG31305;sym=CG31305;scaffold=AE003692;len=1042 Length = 1042 Score = 1156 bits (583), Expect = 0.0 Identities = 583/583 (100%) Strand = Plus / Plus Query: 107 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 519 Query: 167 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 579 Query: 227 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 639 Query: 287 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 699 Query: 347 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 759 Query: 407 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 819 Query: 467 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 820 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 879 Query: 527 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 939 Query: 587 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 999 Query: 647 aactattacttgaagtgcttttaaaacattccgactttctttt 689 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1000 aactattacttgaagtgcttttaaaacattccgactttctttt 1042 >CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 751 bits (379), Expect = 0.0 Identities = 379/379 (100%) Strand = Plus / Plus Query: 1 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 85 Query: 61 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 145 Query: 121 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 205 Query: 181 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 265 Query: 241 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 325 Query: 301 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 385 Query: 361 cgacaacgagctgatcacc 379 ||||||||||||||||||| Sbjct: 386 cgacaacgagctgatcacc 404 >CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 751 bits (379), Expect = 0.0 Identities = 379/379 (100%) Strand = Plus / Plus Query: 1 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26 aacatcttgtgcagaacacagaccaaatattccaaaaatgtctttcgttggcaagaagta 85 Query: 61 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 caagctggacaagtccgagaacttcgatgagtacatgaaggagctgggcgtcggtctggt 145 Query: 121 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 gacgcgcaagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatac 205 Query: 181 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 ctacaccctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgt 265 Query: 241 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 tgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatgg 325 Query: 301 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 caacaagctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcac 385 Query: 361 cgacaacgagctgatcacc 379 ||||||||||||||||||| Sbjct: 386 cgacaacgagctgatcacc 404 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,938 Number of Sequences: 18737 Number of extensions: 21938 Number of successful extensions: 565 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 560 Number of HSP's gapped (non-prelim): 5 length of query: 796 length of database: 41,270,998 effective HSP length: 17 effective length of query: 779 effective length of database: 40,952,469 effective search space: 31901973351 effective search space used: 31901973351 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT003448 BT003448|BT003448 Drosophila melanogaster RH46096 full insert cDNA. (4303 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 115,410 Number of Sequences: 18737 Number of extensions: 115410 Number of successful extensions: 3209 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3209 Number of HSP's gapped (non-prelim): 0 length of query: 4303 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4284 effective length of database: 40,914,995 effective search space: 175279838580 effective search space used: 175279838580 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT003449 BT003449|BT003449 Drosophila melanogaster RH46282 full insert cDNA. (1042 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390... 2026 0.0 CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390... 1124 0.0 CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386... 541 e-153 CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386... 541 e-153 >CG31305-RA feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7390524..7390851, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gene _sym=CG31305;sym=CG31305;scaffold=AE003692;len=1042 Length = 1042 Score = 2026 bits (1022), Expect = 0.0 Identities = 1025/1026 (99%) Strand = Plus / Plus Query: 2 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcgctcagaaaatttcaacagtgaacatcttgtgcagaacacagaccaaatattccaa 60 Query: 62 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgtctttcgttggcaagaagtacaagctggacaagtccgagaacttcgatgagtaca 120 Query: 122 tgaaggagctggttctgccctcaaacaacatatgtatatatggaatgctgcaccgagata 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgaaggagctggttctgccctcaaacaacatatgtatatatggaatgctgcaccgagata 180 Query: 182 aggtggtgctttgccagatctatatttaaatgcatggaggggcttgccaattgataagag 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aggtggtgctttgccagatctatatttaaatgcatggaggggcttgccaattgataagag 240 Query: 242 cggagatgaggatgagggaggagacgacggcccgcattgttcgttaaccttgagcacgac 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cggagatgaggatgagggaggagacgacggcccgcattgttcgttaaccttgagcacgac 300 Query: 302 ttttgacgttacagcggaacggaatctgcagggaacttcatggctcggctttattatttt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttttgacgttacagcggaacggaatctgcagggaacttcatggctcggctttattatttt 360 Query: 362 taattaaatatgatatgatttgcattgtgagcgctttggggtccacaactttgttgggct 421 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 361 taattaaatatgatatgatttgcattgtgagcgctttggggtccccaactttgttgggct 420 Query: 422 aattcaattatgtgcagtctgccccatcattcatctttcggcgtcggtctggtgacgcgc 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aattcaattatgtgcagtctgccccatcattcatctttcggcgtcggtctggtgacgcgc 480 Query: 482 aagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatacctacacc 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 aagatgggcaacagcctgagccccacagtggaggtgaccttggagggcgatacctacacc 540 Query: 542 ctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgttgagttc 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 ctgactaccacctccaccttcaagacctctgccatcagcttcaagctgggcgttgagttc 600 Query: 602 gacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatggcaacaag 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gacgaggagaccctggacggtcgcaacgtcaagagcatcatcaccctggatggcaacaag 660 Query: 662 ctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcaccgacaac 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ctgacgcaggagcagaagggcgacaagcccaccaccatcgtccgcgagttcaccgacaac 720 Query: 722 gagctgatcaccaccctcaccatcggcaacgttaagtgcgtgcgcgtctacaaggccgtc 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 gagctgatcaccaccctcaccatcggcaacgttaagtgcgtgcgcgtctacaaggccgtc 780 Query: 782 taagagactgatctaaaactataatatccatacgactacatgcattaaaactaactcaga 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 taagagactgatctaaaactataatatccatacgactacatgcattaaaactaactcaga 840 Query: 842 tagccaatattcttgttgactaacagtgaactaaaccaaatcaaatggaactgcacgctc 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 tagccaatattcttgttgactaacagtgaactaaaccaaatcaaatggaactgcacgctc 900 Query: 902 tgcccaatgttaatttataatcgcacccgtacacccgcagtcggtgtatgtgggaatact 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 tgcccaatgttaatttataatcgcacccgtacacccgcagtcggtgtatgtgggaatact 960 Query: 962 cctcgtactcggggaccaatttccgaatgcatttgaataaactattacttgaagtgcttt 1021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 cctcgtactcggggaccaatttccgaatgcatttgaataaactattacttgaagtgcttt 1020 Query: 1022 taaaac 1027 |||||| Sbjct: 1021 taaaac 1026 >CG31305-RI feature: mRNA loc=3R:complement(7389802..7390111,7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gene _sym=CG31305;sym=CG31305;scaffold=AE003692;len=714 Length = 714 Score = 1124 bits (567), Expect = 0.0 Identities = 567/567 (100%) Strand = Plus / Plus Query: 461 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 191 Query: 521 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 251 Query: 581 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 311 Query: 641 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 371 Query: 701 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 gtccgcgagttcaccgacaacgagctgatcaccaccctcaccatcggcaacgttaagtgc 431 Query: 761 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 gtgcgcgtctacaaggccgtctaagagactgatctaaaactataatatccatacgactac 491 Query: 821 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 atgcattaaaactaactcagatagccaatattcttgttgactaacagtgaactaaaccaa 551 Query: 881 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 552 atcaaatggaactgcacgctctgcccaatgttaatttataatcgcacccgtacacccgca 611 Query: 941 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 1000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 612 gtcggtgtatgtgggaatactcctcgtactcggggaccaatttccgaatgcatttgaata 671 Query: 1001 aactattacttgaagtgcttttaaaac 1027 ||||||||||||||||||||||||||| Sbjct: 672 aactattacttgaagtgcttttaaaac 698 >CG31305-RJ feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 541 bits (273), Expect = e-153 Identities = 273/273 (100%) Strand = Plus / Plus Query: 461 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 191 Query: 521 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 251 Query: 581 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 311 Query: 641 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 371 Query: 701 gtccgcgagttcaccgacaacgagctgatcacc 733 ||||||||||||||||||||||||||||||||| Sbjct: 372 gtccgcgagttcaccgacaacgagctgatcacc 404 >CG31305-RB feature: mRNA loc=3R:complement(7385630..7386535,7386592..7386945, 7390180..7390451, 7392658..7392789);ID=FBan0031305;gene_id=FBgn0051305;gen e_sym=CG31305;sym=CG31305;scaffold=AE003692;len=1664 Length = 1664 Score = 541 bits (273), Expect = e-153 Identities = 273/273 (100%) Strand = Plus / Plus Query: 461 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 ggcgtcggtctggtgacgcgcaagatgggcaacagcctgagccccacagtggaggtgacc 191 Query: 521 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 ttggagggcgatacctacaccctgactaccacctccaccttcaagacctctgccatcagc 251 Query: 581 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 ttcaagctgggcgttgagttcgacgaggagaccctggacggtcgcaacgtcaagagcatc 311 Query: 641 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 atcaccctggatggcaacaagctgacgcaggagcagaagggcgacaagcccaccaccatc 371 Query: 701 gtccgcgagttcaccgacaacgagctgatcacc 733 ||||||||||||||||||||||||||||||||| Sbjct: 372 gtccgcgagttcaccgacaacgagctgatcacc 404 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,100 Number of Sequences: 18737 Number of extensions: 27100 Number of successful extensions: 745 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 738 Number of HSP's gapped (non-prelim): 7 length of query: 1042 length of database: 41,270,998 effective HSP length: 18 effective length of query: 1024 effective length of database: 40,933,732 effective search space: 41916141568 effective search space used: 41916141568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT003471 BT003471|BT003471 Drosophila melanogaster RE65620 full insert cDNA. (2101 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 58,173 Number of Sequences: 18737 Number of extensions: 58173 Number of successful extensions: 2339 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2339 Number of HSP's gapped (non-prelim): 0 length of query: 2101 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2083 effective length of database: 40,933,732 effective search space: 85264963756 effective search space used: 85264963756 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT003519 BT003519|BT003519 Drosophila melanogaster RE24931 full insert cDNA. (3610 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 80,699 Number of Sequences: 18737 Number of extensions: 80699 Number of successful extensions: 2079 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2079 Number of HSP's gapped (non-prelim): 0 length of query: 3610 length of database: 41,270,998 effective HSP length: 19 effective length of query: 3591 effective length of database: 40,914,995 effective search space: 146925747045 effective search space used: 146925747045 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT003600 BT003600|BT003600 Drosophila melanogaster GM06994 full insert cDNA. (5140 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 130,969 Number of Sequences: 18737 Number of extensions: 130969 Number of successful extensions: 9297 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9297 Number of HSP's gapped (non-prelim): 0 length of query: 5140 length of database: 41,270,998 effective HSP length: 19 effective length of query: 5121 effective length of database: 40,914,995 effective search space: 209525689395 effective search space used: 209525689395 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|BT003616 BT003616|BT003616 Drosophila melanogaster GH12056 full insert cDNA. (2520 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 57,102 Number of Sequences: 18737 Number of extensions: 57102 Number of successful extensions: 1298 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1298 Number of HSP's gapped (non-prelim): 0 length of query: 2520 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2501 effective length of database: 40,914,995 effective search space: 102328402495 effective search space used: 102328402495 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AX093996 AX093996|AX093996 Sequence 120 from Patent WO0118547. (546 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9979 Number of Sequences: 18737 Number of extensions: 9979 Number of successful extensions: 190 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 190 Number of HSP's gapped (non-prelim): 0 length of query: 546 length of database: 41,270,998 effective HSP length: 17 effective length of query: 529 effective length of database: 40,952,469 effective search space: 21663856101 effective search space used: 21663856101 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AX094159 AX094159|AX094159 Sequence 283 from Patent WO0118547. (429 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33184-RD feature: mRNA loc=2R:join(9018913..9019159,9019631..9... 383 e-106 CG33184-RA feature: mRNA loc=2R:join(9018913..9019159,9019631..9... 383 e-106 >CG33184-RD feature: mRNA loc=2R:join(9018913..9019159,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=830 Length = 830 Score = 383 bits (193), Expect = e-106 Identities = 207/214 (96%) Strand = Plus / Plus Query: 216 gctatcgtcgctcagctgttacgtagcgtgtttgttacgtcgtaaattttgtgcggaaaa 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gctatcgtcgctcagctgttacgtagcgtgtttgttacgtcgtaaattttgtgcggaaaa 60 Query: 276 accgcagagttttcattgccgccgtgnnnnnnncataaataatgtctgtgcctttcagtg 335 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 61 accgcagagttttcattgccgccgtgaaaaaaacataaataatgtctgtgcctttcagtg 120 Query: 336 gcgcattgcggcgttccggcggcattgtgtccgccattggcaagcagctgaagagcgtga 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gcgcattgcggcgttccggcggcattgtgtccgccattggcaagcagctgaagagcgtga 180 Query: 396 atttgaagggcgtcaagcggataaccgtgcagtt 429 |||||||||||||||||||||||||||||||||| Sbjct: 181 atttgaagggcgtcaagcggataaccgtgcagtt 214 >CG33184-RA feature: mRNA loc=2R:join(9018913..9019159,9019631..9019758, 9019929..9020383);ID=FBan0033184;gene_id=FBgn0064127;gen e_sym=CG33184;sym=CG33184;scaffold=AE003816;len=830 Length = 830 Score = 383 bits (193), Expect = e-106 Identities = 207/214 (96%) Strand = Plus / Plus Query: 216 gctatcgtcgctcagctgttacgtagcgtgtttgttacgtcgtaaattttgtgcggaaaa 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gctatcgtcgctcagctgttacgtagcgtgtttgttacgtcgtaaattttgtgcggaaaa 60 Query: 276 accgcagagttttcattgccgccgtgnnnnnnncataaataatgtctgtgcctttcagtg 335 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 61 accgcagagttttcattgccgccgtgaaaaaaacataaataatgtctgtgcctttcagtg 120 Query: 336 gcgcattgcggcgttccggcggcattgtgtccgccattggcaagcagctgaagagcgtga 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gcgcattgcggcgttccggcggcattgtgtccgccattggcaagcagctgaagagcgtga 180 Query: 396 atttgaagggcgtcaagcggataaccgtgcagtt 429 |||||||||||||||||||||||||||||||||| Sbjct: 181 atttgaagggcgtcaagcggataaccgtgcagtt 214 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8139 Number of Sequences: 18737 Number of extensions: 8139 Number of successful extensions: 640 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 638 Number of HSP's gapped (non-prelim): 2 length of query: 429 length of database: 41,270,998 effective HSP length: 17 effective length of query: 412 effective length of database: 40,952,469 effective search space: 16872417228 effective search space used: 16872417228 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= embl|AX094201 AX094201|AX094201 Sequence 325 from Patent WO0118547. (422 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6793 Number of Sequences: 18737 Number of extensions: 6793 Number of successful extensions: 442 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 442 Number of HSP's gapped (non-prelim): 0 length of query: 422 length of database: 41,270,998 effective HSP length: 17 effective length of query: 405 effective length of database: 40,952,469 effective search space: 16585749945 effective search space used: 16585749945 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits)