# Database feature summary for Drosophila pseudoobscura from FlyBase Chado Dpse r1.0.4 [20041216]

# ALL chromosomes
CDS	39696
DNA_motif	5
RNA_motif	1
aberration_junction	86
chromosome_arm	9
contig	8242
enhancer	27
exon	433806
gene	79905
golden_path	21
golden_path_fragment	2649
golden_path_region	3239
insertion_site	458
intron	29921
mRNA	115666
match:JOSHTRANSPOSON:Sept	1572
match:blastn:na_dbEST.dpse	34154
match:blastx_masked:aa_SP.hyp.dros	354
match:blastx_masked:aa_SP.real.dros	22163
match:blastx_masked:aa_SPTR.dros	68846
match:blastx_masked:aa_SPTR.insect	7492
match:blastx_masked:aa_SPTR.othinv	12471
match:blastx_masked:aa_SPTR.othvert	11774
match:blastx_masked:aa_SPTR.plant	9609
match:blastx_masked:aa_SPTR.primate	16345
match:blastx_masked:aa_SPTR.rodent	16081
match:blastx_masked:aa_SPTR.worm	12679
match:blastx_masked:aa_SPTR.yeast	5211
match:blastx_masked:aa_TR.real.dros	43823
match:blastx_masked:aa_users_i.dros	4633
match:blastz:rui chen	34576
match:clonelocator:scaffoldBACs	949
match:genewise:Brian Bettencourt	28606
match:genscan	4981
match:genscan:Brian Bettencourt	24851
match:locator:cytology	5715
match:piecegenie	4815
match:pinsertion	2856
match:promoter	35737
match:repeatmasker	4678
match:sim4:na_DGC.dros	15270
match:sim4:na_EST.all_nr.dros	267828
match:sim4:na_adh.cDNAs.dros	51
match:sim4:na_affy_oligo.dros	197726
match:sim4:na_cDNA.dros	10319
match:sim4:na_gadfly.dros.RELEASE2	14389
match:sim4:na_gb.dros	14977
match:sim4:na_pe.dros	3201
match:sim4:na_users_i.dros	737
match:tblastn:Dmel r3.1	9626
match:tblastx:na_dbEST.insect	16818
match:tblastx:na_unigene.rodent	11707
match:trnascan-se	6
match:twinscan:Brian Bettencourt	31534
match_part:blastx_masked:aa_SP.hyp.dros	702
match_part:blastx_masked:aa_SP.real.dros	31704
match_part:blastx_masked:aa_SPTR.dros	121630
match_part:blastx_masked:aa_SPTR.insect	11879
match_part:blastx_masked:aa_SPTR.othinv	20013
match_part:blastx_masked:aa_SPTR.othvert	20023
match_part:blastx_masked:aa_SPTR.plant	15465
match_part:blastx_masked:aa_SPTR.primate	30639
match_part:blastx_masked:aa_SPTR.rodent	28957
match_part:blastx_masked:aa_SPTR.worm	21525
match_part:blastx_masked:aa_SPTR.yeast	7937
match_part:blastx_masked:aa_TR.real.dros	66787
match_part:blastx_masked:aa_users_i.dros	7920
match_part:blastz:rui chen	33688
match_part:clonelocator:scaffoldBACs	949
match_part:genewise:Brian Bettencourt	68031
match_part:genscan	36619
match_part:genscan:Brian Bettencourt	57667
match_part:locator:cytology	5715
match_part:piecegenie	37519
match_part:pinsertion	2856
match_part:repeatmasker	4678
match_part:sim4:na_DGC.dros	42344
match_part:sim4:na_EST.all_nr.dros	575817
match_part:sim4:na_adh.cDNAs.dros	175
match_part:sim4:na_affy_oligo.dros	197726
match_part:sim4:na_cDNA.dros	40802
match_part:sim4:na_gadfly.dros.RELEASE2	58273
match_part:sim4:na_gb.dros	41543
match_part:sim4:na_pe.dros	3294
match_part:sim4:na_users_i.dros	2017
match_part:tblastn:Dmel r3.1	14431
match_part:tblastx:na_dbEST.insect	21647
match_part:tblastx:na_unigene.rodent	20577
match_part:trnascan-se	288
match_part:twinscan:Brian Bettencourt	67998
mature_peptide	8
ncRNA	79
orthologous_region	4386
point_mutation	485
polyA_site	107
protein	62487
protein_binding_site	92
pseudogene	39
rRNA	96
region	30
regulatory_region	137
remark	52
repeat_region	1
rescue_fragment	136
sequence_variant	232
signal_peptide	1
snRNA	28
snoRNA	28
syntenic_region	2346
tRNA	288
transcription_start_site	84
transposable_element	2452
transposable_element_insertion_site	3257
#==================================================

# Chromosome dmel2L
RNA_motif	1
aberration_junction	22
chromosome_arm	1
enhancer	5
exon	34352
gene	2531
golden_path_region	83
insertion_site	217
mRNA	9555
match:JOSHTRANSPOSON:Sept	305
match:blastx_masked:aa_SP.hyp.dros	56
match:blastx_masked:aa_SP.real.dros	4028
match:blastx_masked:aa_SPTR.dros	8183
match:blastx_masked:aa_SPTR.insect	1479
match:blastx_masked:aa_SPTR.othinv	2337
match:blastx_masked:aa_SPTR.othvert	2253
match:blastx_masked:aa_SPTR.plant	1690
match:blastx_masked:aa_SPTR.primate	3254
match:blastx_masked:aa_SPTR.rodent	3034
match:blastx_masked:aa_SPTR.worm	2652
match:blastx_masked:aa_SPTR.yeast	1131
match:blastx_masked:aa_TR.real.dros	10953
match:blastx_masked:aa_users_i.dros	761
match:blastz:rui chen	4224
match:clonelocator:scaffoldBACs	180
match:genscan	867
match:locator:cytology	946
match:piecegenie	863
match:pinsertion	546
match:promoter	6489
match:repeatmasker	740
match:sim4:na_DGC.dros	2677
match:sim4:na_EST.all_nr.dros	48930
match:sim4:na_adh.cDNAs.dros	51
match:sim4:na_affy_oligo.dros	35420
match:sim4:na_cDNA.dros	1806
match:sim4:na_gadfly.dros.RELEASE2	2532
match:sim4:na_gb.dros	2346
match:sim4:na_pe.dros	633
match:sim4:na_users_i.dros	83
match:tblastn:Dmel r3.1	161
match:tblastx:na_dbEST.insect	1606
match:tblastx:na_unigene.rodent	2156
match_part:blastx_masked:aa_SP.hyp.dros	107
match_part:blastx_masked:aa_SP.real.dros	5741
match_part:blastx_masked:aa_SPTR.dros	13795
match_part:blastx_masked:aa_SPTR.insect	2286
match_part:blastx_masked:aa_SPTR.othinv	3657
match_part:blastx_masked:aa_SPTR.othvert	3853
match_part:blastx_masked:aa_SPTR.plant	2773
match_part:blastx_masked:aa_SPTR.primate	6253
match_part:blastx_masked:aa_SPTR.rodent	5553
match_part:blastx_masked:aa_SPTR.worm	4433
match_part:blastx_masked:aa_SPTR.yeast	1671
match_part:blastx_masked:aa_TR.real.dros	16452
match_part:blastx_masked:aa_users_i.dros	1334
match_part:blastz:rui chen	3333
match_part:clonelocator:scaffoldBACs	180
match_part:genscan	6345
match_part:locator:cytology	946
match_part:piecegenie	6546
match_part:pinsertion	546
match_part:repeatmasker	740
match_part:sim4:na_DGC.dros	7234
match_part:sim4:na_EST.all_nr.dros	104116
match_part:sim4:na_adh.cDNAs.dros	175
match_part:sim4:na_affy_oligo.dros	35420
match_part:sim4:na_cDNA.dros	6776
match_part:sim4:na_gadfly.dros.RELEASE2	10069
match_part:sim4:na_gb.dros	6373
match_part:sim4:na_pe.dros	650
match_part:sim4:na_users_i.dros	210
match_part:tblastn:Dmel r3.1	1988
match_part:tblastx:na_dbEST.insect	1957
match_part:tblastx:na_unigene.rodent	3661
match_part:trnascan-se	40
mature_peptide	3
ncRNA	18
orthologous_region	7
point_mutation	179
polyA_site	41
protein	3340
protein_binding_site	17
pseudogene	12
region	11
regulatory_region	18
remark	4
rescue_fragment	41
sequence_variant	84
snRNA	15
snoRNA	4
syntenic_region	190
tRNA	41
transcription_start_site	52
transposable_element	481
transposable_element_insertion_site	631
#==================================================

# Chromosome dmel2R
DNA_motif	1
aberration_junction	7
chromosome_arm	1
enhancer	14
exon	38118
gene	2920
golden_path_region	74
insertion_site	128
mRNA	9965
match:JOSHTRANSPOSON:Sept	313
match:blastx_masked:aa_SP.hyp.dros	54
match:blastx_masked:aa_SP.real.dros	4576
match:blastx_masked:aa_SPTR.dros	15675
match:blastx_masked:aa_SPTR.insect	1601
match:blastx_masked:aa_SPTR.othinv	2565
match:blastx_masked:aa_SPTR.othvert	2565
match:blastx_masked:aa_SPTR.plant	2130
match:blastx_masked:aa_SPTR.primate	4223
match:blastx_masked:aa_SPTR.rodent	3805
match:blastx_masked:aa_SPTR.worm	2716
match:blastx_masked:aa_SPTR.yeast	1048
match:blastx_masked:aa_TR.real.dros	10382
match:blastx_masked:aa_users_i.dros	1741
match:blastz:rui chen	2082
match:clonelocator:scaffoldBACs	161
match:genscan	910
match:locator:cytology	1259
match:piecegenie	892
match:pinsertion	718
match:promoter	5337
match:repeatmasker	1642
match:sim4:na_DGC.dros	3156
match:sim4:na_EST.all_nr.dros	54867
match:sim4:na_affy_oligo.dros	38879
match:sim4:na_cDNA.dros	2191
match:sim4:na_gadfly.dros.RELEASE2	2831
match:sim4:na_gb.dros	2282
match:sim4:na_pe.dros	819
match:sim4:na_users_i.dros	180
match:tblastn:Dmel r3.1	220
match:tblastx:na_dbEST.insect	2972
match:tblastx:na_unigene.rodent	2388
match_part:blastx_masked:aa_SP.hyp.dros	116
match_part:blastx_masked:aa_SP.real.dros	6901
match_part:blastx_masked:aa_SPTR.dros	28024
match_part:blastx_masked:aa_SPTR.insect	2572
match_part:blastx_masked:aa_SPTR.othinv	4223
match_part:blastx_masked:aa_SPTR.othvert	4408
match_part:blastx_masked:aa_SPTR.plant	3445
match_part:blastx_masked:aa_SPTR.primate	7832
match_part:blastx_masked:aa_SPTR.rodent	6764
match_part:blastx_masked:aa_SPTR.worm	4744
match_part:blastx_masked:aa_SPTR.yeast	1684
match_part:blastx_masked:aa_TR.real.dros	15951
match_part:blastx_masked:aa_users_i.dros	2971
match_part:blastz:rui chen	2333
match_part:clonelocator:scaffoldBACs	161
match_part:genscan	7398
match_part:locator:cytology	1259
match_part:piecegenie	7893
match_part:pinsertion	718
match_part:repeatmasker	1642
match_part:sim4:na_DGC.dros	9070
match_part:sim4:na_EST.all_nr.dros	121863
match_part:sim4:na_affy_oligo.dros	38879
match_part:sim4:na_cDNA.dros	9175
match_part:sim4:na_gadfly.dros.RELEASE2	12163
match_part:sim4:na_gb.dros	7038
match_part:sim4:na_pe.dros	858
match_part:sim4:na_users_i.dros	470
match_part:tblastn:Dmel r3.1	2242
match_part:tblastx:na_dbEST.insect	3807
match_part:tblastx:na_unigene.rodent	4256
match_part:trnascan-se	93
mature_peptide	4
ncRNA	18
orthologous_region	15
point_mutation	143
polyA_site	31
protein	3816
protein_binding_site	9
pseudogene	12
rRNA	96
region	5
regulatory_region	13
remark	35
rescue_fragment	30
sequence_variant	40
signal_peptide	1
snoRNA	18
syntenic_region	241
tRNA	94
transcription_start_site	14
transposable_element	476
transposable_element_insertion_site	814
#==================================================

# Chromosome dmel3L
DNA_motif	4
aberration_junction	1
chromosome_arm	1
enhancer	1
exon	36325
gene	2706
golden_path_region	83
insertion_site	17
mRNA	10276
match:JOSHTRANSPOSON:Sept	288
match:blastx_masked:aa_SP.hyp.dros	101
match:blastx_masked:aa_SP.real.dros	3978
match:blastx_masked:aa_SPTR.dros	11508
match:blastx_masked:aa_SPTR.insect	1015
match:blastx_masked:aa_SPTR.othinv	2157
match:blastx_masked:aa_SPTR.othvert	1580
match:blastx_masked:aa_SPTR.plant	1456
match:blastx_masked:aa_SPTR.primate	1405
match:blastx_masked:aa_SPTR.rodent	1735
match:blastx_masked:aa_SPTR.worm	1537
match:blastx_masked:aa_SPTR.yeast	655
match:blastx_masked:aa_TR.real.dros	5628
match:blastx_masked:aa_users_i.dros	472
match:blastz:rui chen	3635
match:clonelocator:scaffoldBACs	186
match:genscan	915
match:locator:cytology	1018
match:piecegenie	915
match:pinsertion	503
match:promoter	7547
match:repeatmasker	502
match:sim4:na_DGC.dros	3051
match:sim4:na_EST.all_nr.dros	52772
match:sim4:na_affy_oligo.dros	38533
match:sim4:na_cDNA.dros	1999
match:sim4:na_gadfly.dros.RELEASE2	2791
match:sim4:na_gb.dros	3053
match:sim4:na_pe.dros	559
match:sim4:na_users_i.dros	133
match:tblastn:Dmel r3.1	268
match:tblastx:na_dbEST.insect	4123
match:tblastx:na_unigene.rodent	147
match_part:blastx_masked:aa_SP.hyp.dros	216
match_part:blastx_masked:aa_SP.real.dros	5452
match_part:blastx_masked:aa_SPTR.dros	19643
match_part:blastx_masked:aa_SPTR.insect	1427
match_part:blastx_masked:aa_SPTR.othinv	3433
match_part:blastx_masked:aa_SPTR.othvert	2581
match_part:blastx_masked:aa_SPTR.plant	2262
match_part:blastx_masked:aa_SPTR.primate	2473
match_part:blastx_masked:aa_SPTR.rodent	3039
match_part:blastx_masked:aa_SPTR.worm	2500
match_part:blastx_masked:aa_SPTR.yeast	955
match_part:blastx_masked:aa_TR.real.dros	8632
match_part:blastx_masked:aa_users_i.dros	846
match_part:blastz:rui chen	3453
match_part:clonelocator:scaffoldBACs	186
match_part:genscan	6614
match_part:locator:cytology	1018
match_part:piecegenie	7043
match_part:pinsertion	503
match_part:repeatmasker	502
match_part:sim4:na_DGC.dros	8346
match_part:sim4:na_EST.all_nr.dros	110762
match_part:sim4:na_affy_oligo.dros	38533
match_part:sim4:na_cDNA.dros	7711
match_part:sim4:na_gadfly.dros.RELEASE2	10955
match_part:sim4:na_gb.dros	8886
match_part:sim4:na_pe.dros	572
match_part:sim4:na_users_i.dros	375
match_part:tblastn:Dmel r3.1	2091
match_part:tblastx:na_dbEST.insect	5414
match_part:tblastx:na_unigene.rodent	277
match_part:trnascan-se	50
mature_peptide	1
ncRNA	8
orthologous_region	12
point_mutation	17
polyA_site	7
protein	3644
protein_binding_site	1
pseudogene	3
region	9
regulatory_region	6
remark	7
repeat_region	1
rescue_fragment	5
sequence_variant	11
snRNA	2
snoRNA	3
syntenic_region	205
tRNA	50
transcription_start_site	1
transposable_element	465
transposable_element_insertion_site	576
#==================================================

# Chromosome dmel3R
aberration_junction	39
chromosome_arm	1
enhancer	4
exon	47642
gene	3495
golden_path_region	118
insertion_site	62
mRNA	12776
match:JOSHTRANSPOSON:Sept	288
match:blastx_masked:aa_SP.hyp.dros	82
match:blastx_masked:aa_SP.real.dros	5444
match:blastx_masked:aa_SPTR.dros	20841
match:blastx_masked:aa_SPTR.insect	1960
match:blastx_masked:aa_SPTR.othinv	3245
match:blastx_masked:aa_SPTR.othvert	3300
match:blastx_masked:aa_SPTR.plant	2599
match:blastx_masked:aa_SPTR.primate	5159
match:blastx_masked:aa_SPTR.rodent	4765
match:blastx_masked:aa_SPTR.worm	3612
match:blastx_masked:aa_SPTR.yeast	1389
match:blastx_masked:aa_TR.real.dros	14264
match:blastx_masked:aa_users_i.dros	924
match:blastz:rui chen	4196
match:clonelocator:scaffoldBACs	235
match:genscan	1192
match:locator:cytology	1295
match:piecegenie	1198
match:pinsertion	620
match:promoter	8057
match:repeatmasker	912
match:sim4:na_DGC.dros	3864
match:sim4:na_EST.all_nr.dros	66619
match:sim4:na_affy_oligo.dros	49768
match:sim4:na_cDNA.dros	2616
match:sim4:na_gadfly.dros.RELEASE2	3576
match:sim4:na_gb.dros	2950
match:sim4:na_pe.dros	716
match:sim4:na_users_i.dros	146
match:tblastn:Dmel r3.1	207
match:tblastx:na_dbEST.insect	4621
match:tblastx:na_unigene.rodent	4467
match:trnascan-se	6
match_part:blastx_masked:aa_SP.hyp.dros	161
match_part:blastx_masked:aa_SP.real.dros	7662
match_part:blastx_masked:aa_SPTR.dros	37109
match_part:blastx_masked:aa_SPTR.insect	3342
match_part:blastx_masked:aa_SPTR.othinv	5186
match_part:blastx_masked:aa_SPTR.othvert	5587
match_part:blastx_masked:aa_SPTR.plant	4253
match_part:blastx_masked:aa_SPTR.primate	9687
match_part:blastx_masked:aa_SPTR.rodent	8488
match_part:blastx_masked:aa_SPTR.worm	5961
match_part:blastx_masked:aa_SPTR.yeast	2126
match_part:blastx_masked:aa_TR.real.dros	21468
match_part:blastx_masked:aa_users_i.dros	1458
match_part:blastz:rui chen	3141
match_part:clonelocator:scaffoldBACs	235
match_part:genscan	9220
match_part:locator:cytology	1295
match_part:piecegenie	9600
match_part:pinsertion	620
match_part:repeatmasker	912
match_part:sim4:na_DGC.dros	10973
match_part:sim4:na_EST.all_nr.dros	146552
match_part:sim4:na_affy_oligo.dros	49768
match_part:sim4:na_cDNA.dros	10646
match_part:sim4:na_gadfly.dros.RELEASE2	14513
match_part:sim4:na_gb.dros	8601
match_part:sim4:na_pe.dros	736
match_part:sim4:na_users_i.dros	399
match_part:tblastn:Dmel r3.1	2919
match_part:tblastx:na_dbEST.insect	5878
match_part:tblastx:na_unigene.rodent	7842
match_part:trnascan-se	79
ncRNA	20
orthologous_region	25
point_mutation	102
polyA_site	21
protein	4666
protein_binding_site	45
pseudogene	8
region	1
regulatory_region	90
remark	2
rescue_fragment	28
sequence_variant	66
snRNA	9
snoRNA	1
syntenic_region	259
tRNA	77
transcription_start_site	13
transposable_element	455
transposable_element_insertion_site	736
#==================================================

# Chromosome dmel4
chromosome_arm	1
exon	2237
gene	83
golden_path_region	5
mRNA	479
match:JOSHTRANSPOSON:Sept	102
match:blastx_masked:aa_SP.real.dros	315
match:blastx_masked:aa_SPTR.dros	684
match:blastx_masked:aa_SPTR.insect	157
match:blastx_masked:aa_SPTR.othinv	163
match:blastx_masked:aa_SPTR.othvert	154
match:blastx_masked:aa_SPTR.plant	68
match:blastx_masked:aa_SPTR.primate	126
match:blastx_masked:aa_SPTR.rodent	177
match:blastx_masked:aa_SPTR.worm	139
match:blastx_masked:aa_SPTR.yeast	53
match:blastx_masked:aa_TR.real.dros	483
match:blastx_masked:aa_users_i.dros	9
match:blastz:rui chen	360
match:clonelocator:scaffoldBACs	14
match:genscan	224
match:locator:cytology	52
match:piecegenie	66
match:pinsertion	4
match:promoter	675
match:repeatmasker	368
match:sim4:na_DGC.dros	251
match:sim4:na_EST.all_nr.dros	2751
match:sim4:na_affy_oligo.dros	1249
match:sim4:na_cDNA.dros	146
match:sim4:na_gadfly.dros.RELEASE2	190
match:sim4:na_gb.dros	523
match:sim4:na_pe.dros	5
match:sim4:na_users_i.dros	37
match:tblastn:Dmel r3.1	64
match:tblastx:na_dbEST.insect	242
match:tblastx:na_unigene.rodent	166
match_part:blastx_masked:aa_SP.real.dros	556
match_part:blastx_masked:aa_SPTR.dros	1559
match_part:blastx_masked:aa_SPTR.insect	230
match_part:blastx_masked:aa_SPTR.othinv	311
match_part:blastx_masked:aa_SPTR.othvert	337
match_part:blastx_masked:aa_SPTR.plant	116
match_part:blastx_masked:aa_SPTR.primate	315
match_part:blastx_masked:aa_SPTR.rodent	460
match_part:blastx_masked:aa_SPTR.worm	335
match_part:blastx_masked:aa_SPTR.yeast	82
match_part:blastx_masked:aa_TR.real.dros	1097
match_part:blastx_masked:aa_users_i.dros	21
match_part:blastz:rui chen	22
match_part:clonelocator:scaffoldBACs	14
match_part:genscan	1288
match_part:locator:cytology	52
match_part:piecegenie	176
match_part:pinsertion	4
match_part:repeatmasker	368
match_part:sim4:na_DGC.dros	831
match_part:sim4:na_EST.all_nr.dros	6700
match_part:sim4:na_affy_oligo.dros	1249
match_part:sim4:na_cDNA.dros	876
match_part:sim4:na_gadfly.dros.RELEASE2	1303
match_part:sim4:na_gb.dros	1687
match_part:sim4:na_pe.dros	5
match_part:sim4:na_users_i.dros	88
match_part:tblastn:Dmel r3.1	1
match_part:tblastx:na_dbEST.insect	320
match_part:tblastx:na_unigene.rodent	405
orthologous_region	1
protein	186
pseudogene	3
remark	1
syntenic_region	30
transposable_element	165
transposable_element_insertion_site	4
#==================================================

# Chromosome dmelU
chromosome_arm	1
#==================================================

# Chromosome dmelX
aberration_junction	17
chromosome_arm	1
enhancer	3
exon	31149
gene	2282
golden_path_region	74
insertion_site	34
mRNA	8978
match:JOSHTRANSPOSON:Sept	276
match:blastx_masked:aa_SP.hyp.dros	61
match:blastx_masked:aa_SP.real.dros	3822
match:blastx_masked:aa_SPTR.dros	11955
match:blastx_masked:aa_SPTR.insect	1280
match:blastx_masked:aa_SPTR.othinv	2004
match:blastx_masked:aa_SPTR.othvert	1922
match:blastx_masked:aa_SPTR.plant	1666
match:blastx_masked:aa_SPTR.primate	2178
match:blastx_masked:aa_SPTR.rodent	2565
match:blastx_masked:aa_SPTR.worm	2023
match:blastx_masked:aa_SPTR.yeast	935
match:blastx_masked:aa_TR.real.dros	2113
match:blastx_masked:aa_users_i.dros	726
match:blastz:rui chen	3599
match:clonelocator:scaffoldBACs	173
match:genscan	873
match:locator:cytology	1145
match:piecegenie	881
match:pinsertion	465
match:promoter	7632
match:repeatmasker	514
match:sim4:na_DGC.dros	2271
match:sim4:na_EST.all_nr.dros	41889
match:sim4:na_affy_oligo.dros	33877
match:sim4:na_cDNA.dros	1561
match:sim4:na_gadfly.dros.RELEASE2	2469
match:sim4:na_gb.dros	3823
match:sim4:na_pe.dros	469
match:sim4:na_users_i.dros	158
match:tblastn:Dmel r3.1	154
match:tblastx:na_dbEST.insect	3254
match:tblastx:na_unigene.rodent	2383
match_part:blastx_masked:aa_SP.hyp.dros	102
match_part:blastx_masked:aa_SP.real.dros	5392
match_part:blastx_masked:aa_SPTR.dros	21500
match_part:blastx_masked:aa_SPTR.insect	2022
match_part:blastx_masked:aa_SPTR.othinv	3203
match_part:blastx_masked:aa_SPTR.othvert	3257
match_part:blastx_masked:aa_SPTR.plant	2616
match_part:blastx_masked:aa_SPTR.primate	4079
match_part:blastx_masked:aa_SPTR.rodent	4653
match_part:blastx_masked:aa_SPTR.worm	3552
match_part:blastx_masked:aa_SPTR.yeast	1419
match_part:blastx_masked:aa_TR.real.dros	3187
match_part:blastx_masked:aa_users_i.dros	1290
match_part:blastz:rui chen	4198
match_part:clonelocator:scaffoldBACs	173
match_part:genscan	5754
match_part:locator:cytology	1145
match_part:piecegenie	6261
match_part:pinsertion	465
match_part:repeatmasker	514
match_part:sim4:na_DGC.dros	5890
match_part:sim4:na_EST.all_nr.dros	85824
match_part:sim4:na_affy_oligo.dros	33877
match_part:sim4:na_cDNA.dros	5618
match_part:sim4:na_gadfly.dros.RELEASE2	9270
match_part:sim4:na_gb.dros	8958
match_part:sim4:na_pe.dros	473
match_part:sim4:na_users_i.dros	475
match_part:tblastn:Dmel r3.1	1786
match_part:tblastx:na_dbEST.insect	4271
match_part:tblastx:na_unigene.rodent	4136
match_part:trnascan-se	26
ncRNA	15
orthologous_region	16
point_mutation	44
polyA_site	7
protein	3095
protein_binding_site	20
pseudogene	1
region	4
regulatory_region	10
remark	3
rescue_fragment	32
sequence_variant	31
snRNA	2
snoRNA	2
syntenic_region	305
tRNA	26
transcription_start_site	4
transposable_element	410
transposable_element_insertion_site	496
#==================================================

# Chromosome dpse2
CDS	10610
chromosome_arm	1
exon	61543
gene	16167
golden_path_region	42
intron	8042
mRNA	15612
match:blastn:na_dbEST.dpse	9103
match:blastz:rui chen	3195
match:genewise:Brian Bettencourt	7732
match:genscan:Brian Bettencourt	5716
match:tblastn:Dmel r3.1	2315
match:twinscan:Brian Bettencourt	7715
match_part:blastz:rui chen	4183
match_part:genewise:Brian Bettencourt	18468
match_part:genscan:Brian Bettencourt	13987
match_part:tblastn:Dmel r3.1	805
match_part:twinscan:Brian Bettencourt	17331
orthologous_region	1145
protein	11013
syntenic_region	250
#==================================================

# Chromosome dpse2_groupMISC
contig	29
exon	355
gene	110
golden_path	1
golden_path_fragment	6
mRNA	104
protein	104
#==================================================

# Chromosome dpse3
CDS	8558
chromosome_arm	1
exon	47905
gene	11818
golden_path_region	24
intron	6522
mRNA	11410
match:blastn:na_dbEST.dpse	6113
match:blastz:rui chen	2256
match:genewise:Brian Bettencourt	6328
match:genscan:Brian Bettencourt	4367
match:tblastn:Dmel r3.1	1654
match:twinscan:Brian Bettencourt	4773
match_part:blastz:rui chen	1981
match_part:genewise:Brian Bettencourt	16323
match_part:genscan:Brian Bettencourt	10927
match_part:tblastn:Dmel r3.1	787
match_part:twinscan:Brian Bettencourt	11449
orthologous_region	928
protein	8608
syntenic_region	226
#==================================================

# Chromosome dpse3_groupMISC
contig	56
exon	502
gene	130
golden_path	1
golden_path_fragment	14
mRNA	124
protein	124
#==================================================

# Chromosome dpse4_group1
CDS	1319
exon	8226
gene	2415
golden_path	1
golden_path_region	15
intron	977
mRNA	2362
match:blastn:na_dbEST.dpse	951
match:blastz:rui chen	696
match:genewise:Brian Bettencourt	1008
match:genscan:Brian Bettencourt	1010
match:tblastn:Dmel r3.1	279
match:twinscan:Brian Bettencourt	1291
match_part:blastz:rui chen	841
match_part:genewise:Brian Bettencourt	2400
match_part:genscan:Brian Bettencourt	2130
match_part:tblastn:Dmel r3.1	116
match_part:twinscan:Brian Bettencourt	2469
orthologous_region	166
protein	1497
syntenic_region	35
#==================================================

# Chromosome dpse4_group2
CDS	319
exon	2164
gene	573
golden_path	1
golden_path_region	7
intron	235
mRNA	559
match:blastn:na_dbEST.dpse	240
match:blastz:rui chen	81
match:genewise:Brian Bettencourt	263
match:genscan:Brian Bettencourt	220
match:tblastn:Dmel r3.1	84
match:twinscan:Brian Bettencourt	282
match_part:blastz:rui chen	172
match_part:genewise:Brian Bettencourt	708
match_part:genscan:Brian Bettencourt	494
match_part:tblastn:Dmel r3.1	14
match_part:twinscan:Brian Bettencourt	601
orthologous_region	48
protein	372
syntenic_region	20
#==================================================

# Chromosome dpse4_group3
CDS	3296
exon	19655
gene	5177
golden_path	1
golden_path_region	16
intron	2502
mRNA	5030
match:blastn:na_dbEST.dpse	2750
match:blastz:rui chen	1403
match:genewise:Brian Bettencourt	2251
match:genscan:Brian Bettencourt	2005
match:tblastn:Dmel r3.1	664
match:twinscan:Brian Bettencourt	2642
match_part:blastz:rui chen	1894
match_part:genewise:Brian Bettencourt	5689
match_part:genscan:Brian Bettencourt	4596
match_part:tblastn:Dmel r3.1	277
match_part:twinscan:Brian Bettencourt	5621
orthologous_region	341
protein	3384
syntenic_region	72
#==================================================

# Chromosome dpse4_group4
CDS	1622
exon	10773
gene	3121
golden_path	1
golden_path_region	8
intron	1195
mRNA	3036
match:blastn:na_dbEST.dpse	1442
match:blastz:rui chen	916
match:genewise:Brian Bettencourt	1438
match:genscan:Brian Bettencourt	1247
match:tblastn:Dmel r3.1	356
match:twinscan:Brian Bettencourt	1577
match_part:blastz:rui chen	761
match_part:genewise:Brian Bettencourt	3387
match_part:genscan:Brian Bettencourt	2681
match_part:tblastn:Dmel r3.1	156
match_part:twinscan:Brian Bettencourt	3170
orthologous_region	197
protein	2023
syntenic_region	27
#==================================================

# Chromosome dpse4_group5
CDS	562
exon	3395
gene	991
golden_path	1
golden_path_region	5
intron	422
mRNA	962
match:blastn:na_dbEST.dpse	617
match:blastz:rui chen	251
match:genewise:Brian Bettencourt	426
match:genscan:Brian Bettencourt	380
match:tblastn:Dmel r3.1	127
match:twinscan:Brian Bettencourt	503
match_part:blastz:rui chen	371
match_part:genewise:Brian Bettencourt	908
match_part:genscan:Brian Bettencourt	826
match_part:tblastn:Dmel r3.1	42
match_part:twinscan:Brian Bettencourt	1024
orthologous_region	63
protein	604
syntenic_region	21
#==================================================

# Chromosome dpse4_groupMISC
contig	58
exon	1085
gene	332
golden_path	1
golden_path_fragment	16
mRNA	325
protein	325
#==================================================

# Chromosome dpse5_groupMISC
contig	140
exon	2137
gene	427
golden_path	1
golden_path_fragment	23
mRNA	410
protein	410
#==================================================

# Chromosome dpseU
exon	3671
gene	1477
golden_path	1
golden_path_fragment	2546
golden_path_region	2547
mRNA	1458
match:blastn:na_dbEST.dpse	984
match:blastz:rui chen	405
match:genewise:Brian Bettencourt	66
match:genscan:Brian Bettencourt	1007
match:tblastn:Dmel r3.1	8
match:twinscan:Brian Bettencourt	1061
match_part:blastz:rui chen	328
match_part:genewise:Brian Bettencourt	83
match_part:genscan:Brian Bettencourt	1684
match_part:tblastn:Dmel r3.1	2
match_part:twinscan:Brian Bettencourt	1640
protein	225
#==================================================

# Chromosome dpseXL_group1a
CDS	2039
exon	13306
gene	3845
golden_path	1
golden_path_region	34
intron	1519
mRNA	3661
match:blastn:na_dbEST.dpse	2176
match:blastz:rui chen	1459
match:genewise:Brian Bettencourt	1276
match:genscan:Brian Bettencourt	1569
match:tblastn:Dmel r3.1	533
match:twinscan:Brian Bettencourt	2104
match_part:blastz:rui chen	1010
match_part:genewise:Brian Bettencourt	2487
match_part:genscan:Brian Bettencourt	3477
match_part:tblastn:Dmel r3.1	171
match_part:twinscan:Brian Bettencourt	4306
orthologous_region	193
protein	2331
syntenic_region	111
#==================================================

# Chromosome dpseXL_group1e
CDS	2924
exon	18386
gene	5207
golden_path	1
golden_path_region	26
intron	2197
mRNA	4957
match:blastn:na_dbEST.dpse	2945
match:blastz:rui chen	2081
match:genewise:Brian Bettencourt	1622
match:genscan:Brian Bettencourt	2199
match:tblastn:Dmel r3.1	750
match:twinscan:Brian Bettencourt	2882
match_part:blastz:rui chen	1605
match_part:genewise:Brian Bettencourt	3353
match_part:genscan:Brian Bettencourt	4985
match_part:tblastn:Dmel r3.1	226
match_part:twinscan:Brian Bettencourt	6083
orthologous_region	287
protein	3222
syntenic_region	130
#==================================================

# Chromosome dpseXL_group3a
CDS	613
exon	3873
gene	1125
golden_path	1
golden_path_region	9
intron	459
mRNA	1069
match:blastn:na_dbEST.dpse	394
match:blastz:rui chen	230
match:genewise:Brian Bettencourt	362
match:genscan:Brian Bettencourt	441
match:tblastn:Dmel r3.1	156
match:twinscan:Brian Bettencourt	590
match_part:blastz:rui chen	430
match_part:genewise:Brian Bettencourt	707
match_part:genscan:Brian Bettencourt	986
match_part:tblastn:Dmel r3.1	54
match_part:twinscan:Brian Bettencourt	1264
orthologous_region	66
protein	665
syntenic_region	21
#==================================================

# Chromosome dpseXL_group3b
CDS	103
exon	559
gene	162
golden_path	1
golden_path_region	2
intron	78
mRNA	157
match:blastn:na_dbEST.dpse	51
match:blastz:rui chen	37
match:genewise:Brian Bettencourt	50
match:genscan:Brian Bettencourt	68
match:tblastn:Dmel r3.1	23
match:twinscan:Brian Bettencourt	86
match_part:blastz:rui chen	58
match_part:genewise:Brian Bettencourt	86
match_part:genscan:Brian Bettencourt	155
match_part:tblastn:Dmel r3.1	7
match_part:twinscan:Brian Bettencourt	176
orthologous_region	13
protein	95
syntenic_region	7
#==================================================

# Chromosome dpseXL_groupMISC
contig	120
exon	871
gene	323
golden_path	1
golden_path_fragment	38
mRNA	309
protein	309
#==================================================

# Chromosome dpseXR_group3a
CDS	535
exon	2996
gene	768
golden_path	1
golden_path_region	4
intron	408
mRNA	750
match:blastn:na_dbEST.dpse	852
match:blastz:rui chen	251
match:genewise:Brian Bettencourt	340
match:genscan:Brian Bettencourt	297
match:tblastn:Dmel r3.1	92
match:twinscan:Brian Bettencourt	388
match_part:blastz:rui chen	136
match_part:genewise:Brian Bettencourt	857
match_part:genscan:Brian Bettencourt	727
match_part:tblastn:Dmel r3.1	52
match_part:twinscan:Brian Bettencourt	850
orthologous_region	59
protein	521
syntenic_region	16
#==================================================

# Chromosome dpseXR_group5
CDS	216
exon	1320
gene	327
golden_path	1
golden_path_region	3
intron	166
mRNA	318
match:blastn:na_dbEST.dpse	203
match:blastz:rui chen	76
match:genewise:Brian Bettencourt	148
match:genscan:Brian Bettencourt	119
match:tblastn:Dmel r3.1	57
match:twinscan:Brian Bettencourt	164
match_part:blastz:rui chen	101
match_part:genewise:Brian Bettencourt	363
match_part:genscan:Brian Bettencourt	314
match_part:tblastn:Dmel r3.1	2
match_part:twinscan:Brian Bettencourt	386
orthologous_region	26
protein	210
syntenic_region	9
#==================================================

# Chromosome dpseXR_group6
CDS	2128
exon	12437
gene	3480
golden_path	1
golden_path_region	15
intron	1565
mRNA	3358
match:blastn:na_dbEST.dpse	1384
match:blastz:rui chen	890
match:genewise:Brian Bettencourt	1595
match:genscan:Brian Bettencourt	1312
match:tblastn:Dmel r3.1	460
match:twinscan:Brian Bettencourt	1678
match_part:blastz:rui chen	1117
match_part:genewise:Brian Bettencourt	3635
match_part:genscan:Brian Bettencourt	2991
match_part:tblastn:Dmel r3.1	225
match_part:twinscan:Brian Bettencourt	3567
orthologous_region	255
protein	2403
syntenic_region	46
#==================================================

# Chromosome dpseXR_group8
CDS	3039
exon	17730
gene	4829
golden_path	1
golden_path_region	23
intron	2289
mRNA	4676
match:blastn:na_dbEST.dpse	2479
match:blastz:rui chen	1226
match:genewise:Brian Bettencourt	2330
match:genscan:Brian Bettencourt	1772
match:tblastn:Dmel r3.1	629
match:twinscan:Brian Bettencourt	2339
match_part:blastz:rui chen	1210
match_part:genewise:Brian Bettencourt	5437
match_part:genscan:Brian Bettencourt	4123
match_part:tblastn:Dmel r3.1	273
match_part:twinscan:Brian Bettencourt	5017
orthologous_region	334
protein	3285
syntenic_region	80
#==================================================

# Chromosome dpseXR_group9
CDS	1813
exon	10849
gene	3023
golden_path	1
golden_path_region	22
intron	1345
mRNA	2931
match:blastn:na_dbEST.dpse	1470
match:blastz:rui chen	1027
match:genewise:Brian Bettencourt	1371
match:genscan:Brian Bettencourt	1122
match:tblastn:Dmel r3.1	365
match:twinscan:Brian Bettencourt	1459
match_part:blastz:rui chen	1010
match_part:genewise:Brian Bettencourt	3140
match_part:genscan:Brian Bettencourt	2584
match_part:tblastn:Dmel r3.1	195
match_part:twinscan:Brian Bettencourt	3044
orthologous_region	189
protein	1951
syntenic_region	45
#==================================================

# Chromosome dpseXR_groupMISC
contig	22
exon	245
gene	61
golden_path	1
golden_path_fragment	6
mRNA	59
protein	59
#==================================================

# Chromosome dpsectg1
contig	2146
#==================================================

# Chromosome dpsectg2
contig	5671
#==================================================