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| ##gff-version 3 | |
| ##sequence-region FBte0000104 1 7411 | |
| ##sequence-region FBte0000109 1 7439 | |
| ##sequence-region FBte0000003 1 4648 | |
| ##sequence-region FBte0000675 1 6995 | |
| ##sequence-region FBte0000266 1 6126 | |
| ##sequence-region FBte0000007 1 7567 | |
| ##sequence-region FBte0000112 1 4581 | |
| ##sequence-region FBte0000034 1 1728 | |
| ##sequence-region FBte0000780 1 5142 | |
| ##sequence-region FBte0000739 1 6411 | |
| ##sequence-region FBte0000023 1 5143 | |
| ##sequence-region FBte0000341 1 4725 | |
| ##sequence-region FBte0000005 1 4708 | |
| ##sequence-region FBte0000466 1 4347 | |
| ##sequence-region FBte0000288 1 1106 | |
| ##sequence-region FBte0000657 1 4346 | |
| ##sequence-region FBte0000021 1 7469 | |
| ##sequence-region FBte0000154 1 2959 | |
| ##sequence-region FBte0000414 1 1653 | |
| ##sequence-region FBte0000143 1 6083 | |
| ##sequence-region FBte0000133 1 5371 | |
| ##sequence-region FBte0000088 1 5020 | |
| ##sequence-region FBte0000670 1 1435 | |
| ##sequence-region FBte0000015 1 7480 | |
| ##sequence-region FBte0000010 1 5519 | |
| ##sequence-region FBte0000042 1 5461 | |
| ##sequence-region FBte0000037 1 2907 | |
| ##sequence-region FBte0000568 1 2121 | |
| ##sequence-region FBte0000118 1 5356 | |
| ##sequence-region FBte0000030 1 3607 | |
| ##sequence-region FBte0001005 1 1736 | |
| ##sequence-region FBte0000333 1 7546 | |
| ##sequence-region FBte0001208 1 11124 | |
| ##sequence-region FBte0001206 1 13424 | |
| ##sequence-region FBte0001207 1 10654 | |
| ##sequence-region FBte0000179 1 8526 | |
| ##sequence-region FBte0000660 1 5034 | |
| ##sequence-region FBte0000918 1 7521 | |
| ##sequence-region FBte0000100 1 9092 | |
| ##sequence-region FBte0000279 1 7410 | |
| ##sequence-region FBte0000217 1 8435 | |
| ##sequence-region FBte0000359 1 8507 | |
| ##sequence-region FBte0001160 1 4740 | |
| ##sequence-region FBte0001377 1 5249 | |
| ##sequence-region FBte0000616 1 7450 | |
| ##sequence-region FBte0000457 1 5149 | |
| ##sequence-region FBte0000603 1 5171 | |
| ##sequence-region FBte0000640 1 7387 | |
| ##sequence-region FBte0000726 1 7062 | |
| ##sequence-region FBte0000001 1 6112 | |
| ##sequence-region FBte0000974 1 7345 | |
| ##sequence-region FBte0001066 1 7256 | |
| ##sequence-region FBte0000312 1 611 | |
| ##sequence-region FBte0001062 1 7411 | |
| ##sequence-region FBte0001040 1 6841 | |
| ##sequence-region FBte0000956 1 7404 | |
| ##sequence-region FBte0000559 1 3409 | |
| ##sequence-region FBte0001030 1 6973 | |
| ##sequence-region FBte0000357 1 4032 | |
| ##sequence-region FBte0001084 1 5124 | |
| ##sequence-region FBte0000619 1 5484 | |
| ##sequence-region FBte0000800 1 3102 | |
| ##sequence-region FBte0000140 1 4470 | |
| ##sequence-region FBte0000927 1 1666 | |
| ##sequence-region FBte0000103 1 4789 | |
| ##sequence-region FBte0001140 1 4740 | |
| ##sequence-region FBte0000608 1 5402 | |
| ##sequence-region FBte0000666 1 5443 | |
| ##sequence-region FBte0000688 1 6852 | |
| ##sequence-region FBte0000292 1 3105 | |
| ##sequence-region FBte0000906 1 5453 | |
| ##sequence-region FBte0001171 1 4605 | |
| ##sequence-region FBte0001033 1 912 | |
| ##sequence-region FBte0000626 1 2167 | |
| ##sequence-region FBte0000725 1 2883 | |
| ##sequence-region FBte0000885 1 2844 | |
| ##sequence-region FBte0000308 1 7369 | |
| ##sequence-region FBte0001175 1 7826 | |
| ##sequence-region FBte0000188 1 4038 | |
| ##sequence-region FBte0001178 1 4917 | |
| ##sequence-region FBte0001174 1 2656 | |
| ##sequence-region FBte0000709 1 1735 | |
| ##sequence-region FBte0000267 1 4558 | |
| ##sequence-region FBte0000982 1 4236 | |
| ##sequence-region FBte0000314 1 2483 | |
| ##sequence-region FBte0000692 1 7318 | |
| ##sequence-region FBte0001166 1 7650 | |
| ##sequence-region FBte0000926 1 6450 | |
| ##sequence-region FBte0000151 1 7359 | |
| ##sequence-region FBte0000930 1 1593 | |
| ##sequence-region FBte0000472 1 7672 | |
| ##sequence-region FBte0001157 1 372 | |
| ##sequence-region FBte0000963 1 1064 | |
| ##sequence-region FBte0000304 1 8556 | |
| ##sequence-region FBte0000420 1 1790 | |
| ##sequence-region FBte0001042 1 754 | |
| ##sequence-region FBte0001039 1 2791 | |
| ##sequence-region FBte0000791 1 4682 | |
| ##sequence-region FBte0001002 1 3961 | |
| ##sequence-region FBte0000636 1 3132 | |
| ##sequence-region FBte0000170 1 564 | |
| ##sequence-region FBte0000720 1 3216 | |
| ##sequence-region FBte0000838 1 1644 | |
| ##sequence-region FBte0000174 1 2841 | |
| ##sequence-region FBte0000690 1 1192 | |
| ##sequence-region FBte0000171 1 5486 | |
| ##sequence-region FBte0000168 1 4955 | |
| ##sequence-region FBte0000764 1 5349 | |
| ##sequence-region FBte0000351 1 6006 | |
| ##sequence-region FBte0001041 1 4428 | |
| ##sequence-region FBte0001136 1 10218 | |
| ##sequence-region FBte0000591 1 4885 | |
| ##sequence-region FBte0000773 1 7060 | |
| ##sequence-region FBte0001189 1 227 | |
| ##sequence-region FBte0000647 1 845 | |
| ##sequence-region FBte0000588 1 9045 | |
| ##sequence-region FBte0000028 1 979 | |
| ##sequence-region FBte0000102 1 1286 | |
| ##sequence-region FBte0000026 1 1773 | |
| ##sequence-region FBte0001144 1 928 | |
| ##sequence-region FBte0000039 1 5540 | |
| ##sequence-region FBte0000284 1 7779 | |
| ##sequence-region FBte0000190 1 1658 | |
| ##sequence-region FBte0000536 1 6644 | |
| ##sequence-region FBte0000017 1 691 | |
| ##sequence-region FBte0000158 1 4158 | |
| ##sequence-region FBte0000322 1 10653 | |
| ##sequence-region FBte0000032 1 6868 | |
| ##sequence-region FBte0000942 1 2485 | |
| ##sequence-region FBte0000464 1 3452 | |
| ##sequence-region FBte0000176 1 3111 | |
| ##sequence-region FBte0000415 1 1730 | |
| ##sequence-region FBte0000948 1 4952 | |
| ##sequence-region FBte0000599 1 4174 | |
| ##sequence-region FBte0000353 1 884 | |
| ##sequence-region FBte0000892 1 610 | |
| ##sequence-region FBte0000984 1 1317 | |
| ##sequence-region FBte0000823 1 3329 | |
| ##sequence-region FBte0001485 1 2986 | |
| ##sequence-region FBte0001486 1 2935 | |
| ##sequence-region FBte0000136 1 823 | |
| ##sequence-region FBte0000962 1 1676 | |
| ##sequence-region FBte0000044 1 1743 | |
| ##sequence-region FBte0001399 1 7220 | |
| ##sequence-region FBte0001487 1 4622 | |
| ##sequence-region FBte0000124 1 759 | |
| ##sequence-region FBte0000332 1 769 | |
| ##sequence-region FBte0000339 1 2775 | |
| ##sequence-region FBte0000935 1 795 | |
| ##sequence-region FBte0000890 1 1447 | |
| ##sequence-region FBte0001188 1 669 | |
| ##sequence-region FBte0001122 1 387 | |
| ##sequence-region FBte0001076 1 1467 | |
| ##sequence-region FBte0000793 1 726 | |
| ##sequence-region FBte0000139 1 993 | |
| ##sequence-region FBte0000407 1 1510 | |
| ##sequence-region FBte0001080 1 2304 | |
| ##sequence-region FBte0000662 1 722 | |
| ##sequence-region FBte0000737 1 5691 | |
| ##sequence-region FBte0000683 1 8500 | |
| ##sequence-region FBte0000538 1 6610 | |
| ##sequence-region FBte0000886 1 8444 | |
| ##sequence-region FBte0001482 1 1757 | |
| ##sequence-region FBte0001071 1 1753 | |
| ##sequence-region FBte0001036 1 3772 | |
| ##sequence-region FBte0001483 1 2038 | |
| ##sequence-region FBte0001481 1 1730 | |
| ##sequence-region FBte0000291 1 6564 | |
| ##sequence-region FBte0000242 1 5386 | |
| ##sequence-region FBte0000587 1 1543 | |
| ##sequence-region FBte0000148 1 10463 | |
| ##sequence-region FBte0001316 1 4533 | |
| ##sequence-region FBte000XXXX 1 7718 | |
| FBte0000104 . LTR_retrotransposon 1 7411 . . . ID=FBte0000104;name=Dmel\Idefix;source=AJ009736;type=LTR;subtype=Gypsy | |
| FBte0000104 . five_prime_LTR 1 600 . + 1 Ontology_term=SO:0000425 | |
| FBte0000104 . three_prime_LTR 6841 7411 . + 1 Ontology_term=SO:0000426 | |
| FBte0000104 . CDS 988 2031 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027381,SPTREMBL:O96739,NCBI_PROTEIN:CAA08806.1;name=Dmel\Idefix\gag;translation=ARKLKDIMAVPQLSETHLNQLLNQIKELNYYDGAPGKLSGFVNQVEQLLSLYPTQEARQAHVIYGAVKRLLVDSALEVVTQERANTWLDMKKALAMAFKDHRPYVTLIRQLEDISYPGSICKFIEKLETQYWIMFDKLELESDHVDKSNYTEMLNKTVKSVIDRKLPDRIYMSLARKDIDTIYKLKQASMELGLYDAIPENHRSNRTEMNKRRNRGNYNQNNNQKYYNNRNHNYSNYYPSMNQNHNTQPPQNPTQPMTNQNQYSPRFIPNNQRGNYYAFRRDLTQAQQNNPLNNTLNFQPSTSNNINRQGPVKRQRESQSDQSRMDVNFHQAASDTQMIEKDIQVPM | |
| FBte0000104 . CDS 1950 5402 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027380,SPTREMBL:O96740,NCBI_PROTEIN:CAA08807.1;name=Dmel\Idefix\pol;translation=PKQDGCKFSSSCLGHSNDREGHTSPYVKIIHHNKNYKGMIDTGSSINIIRENFENLEEKEENLIVYTIKGPITLKRSIIIKPTSVCPSAQKFYIHKFSDNYDFLLGRKYLEDTKAKIDYANETVTLGSKVFKFLYEEKKGETASKCLDPQEKNDSALVDRTKPKMQKVKTAPKCLKPKHQQQKKETALPKCLISNVVKDTVDNDVTHLDPMSVDNDIVNFAINNELRECNEYRLEHLNAEEVECLKKFLYEYRDIQYKEGENLTFTSTIKHVIQTQHEDPVYRKPYKYPQSVDQEVNKQIKEMIEQGIVRKSKSPYCSPIWVVPKKADASGKQKFRLVVDYRNLNEITVNDKFPIPRMDEILDKLGRCQYFTTIDLAKGFHQIQMDENSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIVYSTPLEEHILSLKKVFEKLRDANLKLQLDKCEFMKKETEFLGHIVTTNGIKPNPNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNFAKIVKPMTLKLKKGAIIDTKCKEYIESFEKLKVLITSDPILIYPDFSKPFSLTTDASNVAIGAVLSQNHKPVCYASRTLNEHEINYATIEKELLAIVWATKYFRSYLFGRPFEVLSDHKPLVWLNNIKEPNMKLQRWKIKLNEFDYKIKYLPGKENHVADALSRTKIEVMVGEVANSADATIHSAIEDNLNYIPITERPINYFSRQIEIEKGDNDTTSVQHLFQKLKIKIVYKEMTPELAKNLIKEYVCTKKSAIYFPNDEDFLIFQRAFTEIISPNNFTKLLRCTTKLIDILTYAEFKDLILKKHKELLHPGIEKTINLFKEEYYYPDSQKLIQTIINECQICYLAKTEHQTQMTYETTPEIFNTREKYMIDFYLTGNQIFLSCIDIYSKFASLVELKSRDWLEAKRAITKIFNDMGKPQEIKADKDSAFMCLALQNWLRSEGVQISISTSKNGISDIERFHKTVNEKLRIIGSQQNVEDRCTKFERILYIYNHKTKHNSTKRFPADIFLYAGSPDFNVQQNKIDRIEYLNKNRHDFEVDIKYRQAPLVKSKITNPFKKTGRIGQVDDKHFEETNRGRKIVHYKSKFKKQKKFNKSKYDNSRPTKEAQSTQHTSNNA | |
| FBte0000104 . CDS 5248 6780 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027382,SPTREMBL:O96741,NCBI_PROTEIN:CAA08808.1;name=Dmel\Idefix\env;translation=MINISKKQIVAGRSFTISQNLRNRKSLIRANMIIPDQPKKHKVHNILLIMLSCILSLIITVKCNNIEVNPVNAKNGYLIFQTGTMEIPTSYEYHYLSINITKTMLMFEDIVSEANNYPNVPQIQYLVDKLKREINGLRIISRSKRGLLNVVGKAYKYLFGTLDEDDREELEEKINNMSEDSVKTHDLNTILDVINSGIDIINKLKVDKEQHQQIAVLIFNLEQFTEYIEDIELGLQLTRLGIFNPRLLKHDYLKHVNSEKMLKIKTSTWLKTDTNEILIISHIPSEVTKVPIFQIVPYPDEHNYILTEQIFDKFYIFDNQVFHKDTNRDIFDKCIIGIIKQEQTQCKYIKTHKNYQINYIEPNILLTWNIPETAVNQDCTHNKILISGNNIIKIKNCTIQIDEFLISNNLADFTQTIYITNNVTRLEPINHLQTREMIETHVKHYNFFQIICITTFVIMIISLTLYVAYKFKNIPKKIIVNIVSKKNTRTLKIMSMKIFNKEIILPYTQI | |
| FBte0000109 . LTR_retrotransposon 1 7439 . . . ID=FBte0000109;name=Dmel\17.6;source=X01472;type=LTR;subtype=Gypsy | |
| FBte0000109 . five_prime_LTR 1 512 . + 1 Ontology_term=SO:0000425 | |
| FBte0000109 . three_prime_LTR 6928 7439 . + 1 Ontology_term=SO:0000426 | |
| FBte0000109 . TATA_box 372 377 . + 1 Ontology_term=SO:0000174 | |
| FBte0000109 . TATA_box 7271 7277 . + 1 Ontology_term=SO:0000174 | |
| FBte0000109 . primer_binding_site 511 529 . + 1 Ontology_term=SO:0005850 | |
| FBte0000109 . polyA_signal_sequence 372 377 . + 1 Ontology_term=SO:0000551 | |
| FBte0000109 . polyA_signal_sequence 7299 7304 . + 1 Ontology_term=SO:0000551 | |
| FBte0000109 . RR_tract 6917 6927 . + 1 Ontology_term=SO:0000435 | |
| FBte0000109 . CDS 1074 2393 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044339,SWISS-PROT:P04282,NCBI_PROTEIN:CAA25701.1;name=Dmel\17.6\gag;translation=MAQEPAIVPPLSDSNMTQVAYQIGNVEKFNGDPGSLYTFVSRIDYILALYATGDERQQQIIFGHIERSISGEVMRCIGAYDMYTWQQLRRQLVLNYKPQTPNHVLLEEFRKTPFRGNVRAFLEEAESRRQTLTSKLELEQDLEEKTFYLKLIKSSIESLIEKLPTHIYLRINNHNIPDLRSLINLLQEKGMYEQINHTSTHVQKQNFSDKPQKSFNQNTNQSNNIRKYPTPFLHYNSPIPYQAPQIYQTPPTNNPLYRHPIPYHPNPNNVFQPSQQNNVFQPSQQNNAFQPNQRTNFTSRPIFNTNRNNAFDQNRFGQQPQYQNQQSTQNSSSYVPNRPIKRLRPANSGQTGMSVDETLYQEDAFYQQCVPYDYFYYPTYDHSDYYPENQYQIDENNQNLQRTQQLQQINTDETNNDNQEPNVEQAENFQPQALENPNI | |
| FBte0000109 . CDS 2345 5518 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014453,SWISS-PROT:P04323,NCBI_PROTEIN:CAA25702.1;name=Dmel\17.6\pol;translation=TGRKFSATSLGKPQYITIKYKENNLKCLIDTGSTVNMTSKNIFDLPIQNTSTFIHTSNGPLIVNKSIIIPSKILFPTTNEFLLHPFSENYDLLLGRKLLAEAKATISYRDQEVTLYNNKYKLIEGIATHEQSHFQNVNMIPDTMLRQPNKISPILESDLYRLEHLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEEDNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYFKKHITQIFYDIMTREKAEQYLIDHFCGKKSALYIESDADFEVIQAAHKLAINTKYTKILRSTILLKNITTYAEFKELILTAHEKLLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPTKTTPKPEHCREKFMIDIYSSEGKHYVSCIDIYSKFATLEEIKTKDWIECKNALMRIFNQLGKPKLLKADRDGAFSSLALKRWLESEEVELQLNTTKTGVADIERLHKTINEKIRIIKTSDDEETKLSKMETVLNIYNHKTKHDTTGQTPAHIFLYAGQPILDTQQNKENKINKINNDRVEYEVDTRYRKGPLQKGKLENPFKPTKNVEQTDSDHYKITNRNRITHYYKTQFKKRKKNNQLSISQAPGT | |
| FBte0000109 . CDS 5488 6903 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027624,SWISS-PROT:P04283,NCBI_PROTEIN:CAA25703.1;name=17.6\env;translation=SALNFTGTWHLITLLLMLITTVHGQQIEINNIDTNHGYLLFSDKPVQIPSSFEHHCLRINLTEIDTIADYFEQRLRTDYHAPQVKFLYNKMRRELAGIALRHRNKRGLINIVGSVFKYLFGTLDENDRVDIQRKLETNAHNSVNLHELNDAIQLINDGMQKIQNYENNSNIINSLLYELMQFTEYIEDVEMGMQLSRLGLFNPKLLNYDKLENVNSQNILNIKTSTWINYNDNQLLIISHIPINFSLINTVKIIPYPDSNGYQLEYTDTQSYFERENKVYNNENKEINNECVTNIIKHLKPICNFESIHTDEIIKYIEPNTIVTWNLTQTSLKQNCQNSFNNIKIKGNKMIKVTQCKIEINSIILSENLFKPEIDLTPLYTPLNITKIKTVKHNDINEMISQNNITLYIFMTTVIIILILLYLYLRYVSFNPFMMLYAKLKLRKNQNQNTAQQIEMEDVPLPLLYPSIPAQV | |
| FBte0000003 . LTR_retrotransposon 1 4648 . . . ID=FBte0000003;name=Dmel\1731;source=X07656;type=LTR;subtype=Copia | |
| FBte0000003 . five_prime_LTR 1 336 . + 1 Ontology_term=SO:0000425 | |
| FBte0000003 . three_prime_LTR 4313 4648 . + 1 Ontology_term=SO:0000426 | |
| FBte0000003 . TATA_box 110 116 . + 1 Ontology_term=SO:0000174 | |
| FBte0000003 . primer_binding_site 342 352 . + 1 Ontology_term=SO:0005850 | |
| FBte0000003 . CDS 431 1252 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0020768,REMTREMBL:CAA30502,NCBI_PROTEIN:CAA30502.1;name=Dmel\1731\gag;translation=MSNLYQIDKLEDGSYETWSIQMRSVLVHACLWKVVSGESVKPEVDTGGAWQSQDEKALATIILSVKSSQLGYVKGCLTAAEAWKVLQDVHQPKGPLRTVMLYKKLLSKRLLEGQSISSHIKEFKEIFDALDAVEIGITEKLRSVVLLSSLPESFENFVVAIETRDDVPLFDALCIKLIEEDTRRGGAEQQREKQTESAKAFTAVHKPQAPAREARPSAKKRKDVVCYNCGERRHFKANCRREKVNKESATQEQCSLLNALDSGGFWQNTVVSR | |
| FBte0000003 . CDS 1203 4151 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0012032,REMTREMBL:CAA30503,NCBI_PROTEIN:CAA30503.1;name=Dmel\1731\RTase;translation=MRWIVVVFGKTQWCLDSGATSHMCCDRSVFTEFEEHTEKISLAGNGFLLAKGIGTVKLKTDLCTLVLNNVLFVPDLNGNFMSVSRAAQYKCFVNFGPHYADVIQEGERILRVMRAGNLYMFQGKHNSCFAAVDADGSLWHKRNGHLNTSSLQEMVRKKMVYGVEKVVFKPDAVCKTCMLAKIHVQPFPKTTRSRAEELLDMIHSDLCGPFSTPSLAGSKYFLTFIDDKSRRIFVYFLRKKDEVFTKFVEFKKLVERQTGRKIKCIRSDNGGEFVNNVFDDYLKAHGIARQLTIPHTPQQNGVAERANRTLVEMARCMLLQSELGEALWAEAINTAVYLRNRSTSRALQSKTPMEEWTGKIPAVSHLRVFGAIAVALDKGVHKGKFESKGKEYRMIGYSIAAKGYRLFDKEKRCVIEKQDVLFDESGSLVNHGNTIEFQFPATDDPEPQSDSNAREGDDTEPVGSSDDYESAAEAEEAEVHVGPGRPKIVRTGRPGRPKKQYNVLGVLMASDVEIPKSYEEAINSQYSAKWEEAMGLEYKALLANETWKLADLPRNRRCVACKWVYSLKRDVSGRIERFKARLVAKGCSQKFGVDYFETFSPVCRLESVRLILALAAEMQLYLHHMDVCTAYLNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACNHEPCLYQQSGQGNLMLILVYVDDLILACQSREDMEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRDYGSENCRPATTPLDAGHQVLCAGEQCQKVDAGQYQSTIGELMWLGLTTRPDMLHSVAKLAQRNQDPHSEHMVAVKHILRYLASTVDVKLHYQKCGQAFTGFVDADWGGDRLDRKSYTGYVFFLSGGPVSWRSEKQQSVALSSTEAEYMALTTACKEAIALRRLIVEIVCGDLKTPTVMHGDNLKCAAQLAKNPVHHSRTKHIDIRYH | |
| FBte0000675 . LTR_retrotransposon 1 6995 . . . ID=FBte0000675;name=Dmel\297;source=X03431;type=LTR;subtype=Gypsy | |
| FBte0000675 . five_prime_LTR 1 414 . + 1 Ontology_term=SO:0000425 | |
| FBte0000675 . three_prime_LTR 6582 6995 . + 1 Ontology_term=SO:0000426 | |
| FBte0000675 . TATA_box 276 282 . + 1 Ontology_term=SO:0000174 | |
| FBte0000675 . TATA_box 6857 6863 . + 1 Ontology_term=SO:0000174 | |
| FBte0000675 . polyA_signal_sequence 304 309 . + 1 Ontology_term=SO:0000551 | |
| FBte0000675 . polyA_signal_sequence 6885 6890 . + 1 Ontology_term=SO:0000551 | |
| FBte0000675 . primer_binding_site 414 431 . + 1 Ontology_term=SO:0005850 | |
| FBte0000675 . RR_tract 6571 6581 . + 1 Ontology_term=SO:0000435 | |
| FBte0000675 . start_codon 803 805 . + 1 Ontology_term=SO:0000318 | |
| FBte0000675 . CDS 803 2047 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044338,SWISS-PROT:P20828,NCBI_PROTEIN:CAA27159.1;name=Dmel\297\gag;translation=MSQPIIALSDINLAEARRQLKDIMPFKGDPETLHTFISRVDYVISLYQTNDVRQQRILLGAIERNLDGQITRSLGLPNVEDWPTLKARLIAEFKIQTPNYKLLENFRETPYRGSLRAFCEEAERRRQLLISKLHLEGNQSDFLIYIQGIKESIKILIRKLPIQLFTILAHHDITDLRSLITIAQNEGIYEEHINFEFYEKPEYRNKNSNSNQNSKTQKFNTNVQTQNRPSYSQYSQPFQPNFNQYIQPFRPSYTQQITNNPPMWHAPNYFRPNQYINPQPIIQKNHFQQYPNKAQFPQTTHFRGNTYPRLQQPSTYKNTNFPITKRLRPSDSEQTKMSIDEIRFQDAHEFEQVQPNYYEQQYFNQNQYNPYQNHSFINEGQQQVQFVQINNKQNQNNSELNENFRLTVPENTNT | |
| FBte0000675 . CDS 1999 5178 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027622,SWISS-PROT:P20825,NCBI_PROTEIN:CAB57796.1;name=Dmel\297\pol;translation=TKRKFSVNSSGKYEYIKIVYKGRSYKCLLDTGSTINMINENIFCLPIQNSRCEVLTSNGPITLNDLIMLPRNSIFKKTEPFYVHRFSNNYDMLIGRKLLKNAQSVINYKNDTVTLFDQTYKLITSESERNQNLYIQRTPESIASSDQESIKKLDFSQFRLDHLNQEETFKLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEENHHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIFGNSITTIQYDVMTLEKAKQILLDHFIHRNITIYIESDVDFEIVQRAHIEIVNTTYTKVIRSLFLLKNVGSYAEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTEHRNTKMPLKITPNPEHCREKFVVDIYSSEGKHYISCIDIYSKFATLEQIKTKDWIECRNALMRIFNQLGKPKLLKADRDGAFSSLALKRWLEEEEVELQLNTAKNGVADVERLHKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDTTGQRPAQIFLYAGHPILDTQKIKEKKIEKINEDRREFNIDTNYRKGPLQKGKLENPFKPTKNVEQTDPDHYKITNRNRVTHYYKTQFKKQKKNNKLSISQAPGTR | |
| FBte0000675 . start_codon 5145 5147 . + 1 Ontology_term=SO:0000318 | |
| FBte0000675 . CDS 5145 6560 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027623,SWISS-PROT:P20829,NCBI_PROTEIN:CAB57797.1;name=297\env;translation=TLNFTGTWYPITLLFILITAVHGQQIQINNIDTNHGYLLFSDKPVQIPSSFEHHSLKINLTEIDIVVDYFEQRLRTDYHAPQINFLYNKIKRELARITLKHRNKRGFINIVGSGFKYLFGTLDENDRVEIQKKLEINVHNSVKLHELNDAIRLINDGMQKIQNYENNHTIIDSLLFELMQFTEYIEDLEMAMQLSRLGLFNPKLLNYDKLENVNSQNILNIKTSTWINYNDNQVLIISHIPIYLSLISTIKIIPYPDSNGYQLDYTDTQSYFEKENKVYNTENKEVKNECVTNIIKHLNPICNFKPVHTNEIIKYIEPNTIVTWNLTQTILNQNCQNSINKIKIEGNKMIRVTQCKIEINNINFSETLLEPEIDLTPLYTPLNITKIKIVKHNDIIEMISENNITLYIQMIIVIIALILLYSYLRYVSFKPFMMLYAKLKIRKNQNQNTPQQTEIEEIPFPTLYPSIPAQV | |
| FBte0000266 . LTR_retrotransposon 1 6126 . . . ID=FBte0000266;name=Dmel\3S18;source=U23420;type=LTR;subtype=Bel-Pao | |
| FBte0000266 . five_prime_LTR 1 361 . + 1 Ontology_term=SO:0000425 | |
| FBte0000266 . three_prime_LTR 5766 6126 . + 1 Ontology_term=SO:0000426 | |
| FBte0000266 . start_codon 919 921 . + 1 Ontology_term=SO:0000318 | |
| FBte0000266 . CDS 919 5742 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044337,REMTREMBL:AAB03640,NCBI_PROTEIN:AAB03640.1;name=Dmel\3S18\ORF;translation=MFIGSIASNSSLTDCQRFHYLKSYLAGDALALVKHIPVTNDNYREAWERLEQRYNKQSLIIRSFLNSFMSLPSAINSNIGTVRKIADGADEVIRGLRALNCEERDPWLIFILLSKLDSDTRQAWAQCAESEEKGVTINRFLKFLTSRCDTLEAFELTRSTQARRAATTHHADTHPRREEPKCTSCQQNHQLFKCPQFIALDIASRRDFLKSRKLCFNCLSPAHMVGNCTSRHTCRICRRKHHTLVHGSSQPIQNGNNIDTASVDSRDRPAVSHAGSTIGHNQPLAREGHRLGSETPAENNFTHHTLENIPAAGSQTLLPTILADVIDAWGNTTTCRLLLDTGSTITLASESFVQRIGVRRTHARISILGLAANSAGVTRGRAHIKLRSRHSGQTVELVSFILTSLTSSLPAQVIDTSSSTWRQICELPLADPTFCTPGAIDVIVGSDQLWSLYTGDRKHFGNDFPIALNTVFGWILAGSYSAFDDHPTSAVTHHADLDTMVRSFMEMDSIQPNQALLDASDPTERHFAATHKRSTDGVYVVEYPFKEKAPPIDSTLPQAINRFFSLERKFRRYPELKQQYEAFLDDYLQRGHMEKLTSAQVEESPDTCFYLPHHAVIKLDSLTTKCRVVFDGSGKDSSGVSLNDRLHIGPPIQRDLFGVCLRFRQHQYVLCADVEKMFRGIKVFKPHTNFQRIVWRTTENEPLLHFRLLTVTYGLAPSPFLAVRVLKQLADDHGHEYPAAAHALLHDAYVDDIPTGANTFEELMILKDELIALLDKGKFKLRKWSSNSWRLLKSLPEEDRCFEPIQLLNKSAADSPVKVLGIQWNPGKDVLYLNLKGCDATISPTKRELLSQLSRIYDPLGLVAPVTVLLKLIFQESWTSVLQWDDPIPESLRTRWRALVEDLPALTQCQVPRYIASPFRDVQLHGFADASSHAYGAVVYARVAVGCSFQVTLVAAKTRVAPIKPVSIPRLELNAALLLSRLLSIVKTSLTIPLFSTSCWTDSEIVLHWLSAPPRRWNTYVCNRTSEILSDFPRSCWNHVRTEDNPADCASRGLHPSKLLEHRLWWKGPSWLATPTSEWPPSTSKFSVSSSFDVNTEERAIKPTTLHNFPDESIHELLIHKFSTWTRLIRVSSYCHRFIHTLRSHHRNSAPFLTSEELLDAQRRLIRHVQQKSFAREYEQLENRRQLNAKSHLIRFSPFLDDYGVMRVGGRIEQSTLNYNAKHPILIPKDTPLAGLLVRHFHVSYLHTGVDATFTNLRQQYWILGARNLVRKAVFQCKSCFLQRKGTSNQIMGELPIPRVQASRCFQHTGLDYAGPIAIKESKGRTPRIGKAWFSIFVCLTTKALHIEVVSELTTQAFIAAFQRFIARRAKPTDLYSDNGTTFHGGKKTLDDMRRLAIQQAKDEELAGFFANEGISWHFIPPSAPHFGGMWEAGVRSIKLHMKRILGSKALTFEELSTVLTQIEAILNSRPLCPTGDNSLDPLTPAHFLTGSPYTALPEPCRLDMQVNRLERWNQLQAMVQGFWKRWHMEYLTSLHERTKWHLETENLKIDTLVVLKEPNLPPSKWILGRITAVHAGIDNKVRVVTVKTAHGLYKRPIAKIAVLPLC | |
| FBte0000007 . LTR_retrotransposon 1 7567 . . . ID=FBte0000007;name=Dmel\412;source=?;type=LTR;subtype=Gypsy | |
| FBte0000007 . five_prime_LTR 1 514 . + 1 Ontology_term=SO:0000425 | |
| FBte0000007 . three_prime_LTR 7054 7567 . + 1 Ontology_term=SO:0000426 | |
| FBte0000007 . CDS 679 1044 . + 1 Ontology_term=SO:0000316 | |
| FBte0000007 . CDS 1408 1722 . + 1 Ontology_term=SO:0000316 | |
| FBte0000007 . CDS 1888 3243 . + 1 Ontology_term=SO:0000316 | |
| FBte0000007 . CDS 3864 6866 . + 1 Ontology_term=SO:0000316 | |
| FBte0000112 . LTR_retrotransposon 1 4581 . . . ID=FBte0000112;name=Dmel\aurora-element;source=?;type=LTR;subtype=Bel-Pao | |
| FBte0000112 . five_prime_LTR 1 324 . + 1 Ontology_term=SO:0000425 | |
| FBte0000112 . three_prime_LTR 4258 4581 . + 1 Ontology_term=SO:0000426 | |
| FBte0000112 . transcription_start_site 191 196 . + 1 Ontology_term=SO:0000315 | |
| FBte0000112 . polyA_signal_sequence 4482 4487 . + 1 Ontology_term=SO:0000551 | |
| FBte0000112 . primer_binding_site 331 346 . + 1 Ontology_term=SO:0005850 | |
| FBte0000112 . RR_tract 4247 4256 . + 1 Ontology_term=SO:0000435 | |
| FBte0000034 . terminal_inverted_repeat_element 1 1728 . . . ID=FBte0000034;name=Dmel\Bari1;source=X67681;type=DNA;subtype=Tc1-Mariner | |
| FBte0000034 . terminal_inverted_repeat 1 28 . + 1 Ontology_term=SO:0000481 | |
| FBte0000034 . terminal_inverted_repeat 1701 1728 . + 1 Ontology_term=SO:0000481 | |
| FBte0000034 . CDS 379 1398 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0043784,SPTREMBL:Q24258,NCBI_PROTEIN:CAA47913.1;name=Dmel\Bari1\ORF;translation=MPKTKELTVEARAGIVARFKAGTPAAKIAEIYQISRRTVYYLIKKFDTVGTLKNKKRSGRKPVLDQRQCRQILGVVAKNPSASPVKIALESKNTIGKQVSSSTIRRRLKEADFKTYVVRKTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYSKHFMHLKNNQKHLAAQPTNRFGGGTVMFWGCLSYYGFGDLVPIEGTLNQNGYLLILNNHAFTSGNRLFPTTEWILQQDNAPCHKGRIPTKFLNDLNLAVLPWPPQSPDLNIIENVWAFIKNQRTIDKNRKREGAIIEIAEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY | |
| FBte0000780 . non_LTR_retrotransposon 1 5142 . . . ID=FBte0000780;name=Dmel\BS;source=?;type=LINE;subtype=Jockey | |
| FBte0000780 . CDS 341 2248 . + 1 Ontology_term=SO:0000316 | |
| FBte0000780 . CDS 2245 2965 . + 1 Ontology_term=SO:0000316 | |
| FBte0000739 . LTR_retrotransposon 1 6411 . . . ID=FBte0000739;name=Dmel\Burdock;source=U89994;type=LTR;subtype=Gypsy | |
| FBte0000739 . five_prime_LTR 1 275 . + 1 Ontology_term=SO:0000425 | |
| FBte0000739 . three_prime_LTR 6136 6411 . + 1 Ontology_term=SO:0000426 | |
| FBte0000739 . start_codon 564 566 . + 1 Ontology_term=SO:0000318 | |
| FBte0000739 . CDS 564 2057 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0043782,SPTREMBL:O01350,NCBI_PROTEIN:AAB50147.1;name=Dmel\Burdock\gag;translation=MSDSDNLLDNLVSSLNKWSAHQASRQNSAEKNNKSSDNWWSKTKTTSEMEFEAQLKAIVESAVAGALAVQKQSFEKQLQEMNERIGKLTVNTPEVETYVDAEIRPGVVCSEPLDILKSLPDFDGKSETYVSWRKAAHVAFKVFKDYEGSSTFYQALGIMRNKIKGPANTVLASFNTPLHFKAMISRLDFTYSDKRPIYLIEQELSTLRQGDMTLTEFYDEVEKKLTLLTNKTIMTFDSALAMSLNEKYRTDALRVFVTGAKKSLSDILFAKGPKDLPTALALAQEVESNHERYQFALIYSKNIGDRGQKIEQRHSDKDRNSIMPMQTKNPYFSKRQVHTYDNQERQDPVQLTNPDVSMRSRRTGNFGQTPFPTQGNIWPSQQQNSWPSQQQYSWPSQQQNSFRTQNQFASQPQQQNTSQAQGHFGYAQASKRPTSGSARFTGPKQQRINYLPHEKGQCEEDTDGYQKEAEAEVDDYEDELVNYDHVHFLATNPCYRT | |
| FBte0000739 . CDS 1994 5119 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0043781,SPTREMBL:O01351,NCBI_PROTEIN:AAB50148.1;name=Dmel\Burdock\pol;translation=GRTSELRSCSFFSHKSLLPYIEREIAGRTIKLLIDTGASKNYIQPLPELKNIMPVQNKFTVKSLHGCNTVKQKCFIKLFNTSVQFFILPSLSSFDAIIGLDLLKQGNATLDFKNKTLNINNEVESIQFLRCDSVNFANIENIVVPNQISNKFHTMLRNRLAVFAEPEEALPYNTNIVATIRTEDDQPIYSKLYPYPMGVSDFVNKETHALLKDGIIRPSSSPYNNPVWVVDKKGTDEEGNTKKRLVIDFRKLNLKTIDDKYPIPNVVWILSNLGKARFFTTLDLKSAFHQILLAEKDRAKTAFSVGNGKYEFCRLPFGLKNAPSIFQRAIDDVVRDRIGKSCYVYVDDVIIFSNGIEDHVNDVAWVLDRLSGANMRVSKEKSFFFKESVEYLGFMVSSGGITTSPSKVEAIQKYNQPTNLFSVRSFLGLASYYRCFIKDFASIARPLTDILKGENGKVSASQSKKIPISFDERQCSAFEKLKNVLVSENVMLLYPDYRKAFDLTTDASAFGLGAVLSQDGKPVTMISRTLQDRELNFATNERELLAIVWALKSLRNYLYGVKNLNIFTDHQPLTYAVSDRNPNAKIKRWKAFIDEHNAKIFYKPGKETYVADALSRQAIHVLEDEPQSDIATIHSEISLTFTIETIDKPVNCFRNQIVIDEGTADSTRTFVIFGSKTRHLIQFLDKETLIGRIRDVVKPDVVNAIHCELPVLAFIQNSLVNDFPATTFRHTMKMVSDIFNQTEQREIVSLEHNRAHRAAQENVKQILQYYFFPKMSQIAATFVSNCLVCQKAKYDRHPQKQILGRTPIPSHVGETLHIDIFSTGRNYFLTCIDKFSKFAIVQPIGSRTITDLEPAIMQLMNFFPHSKTIFCDNEPSINSESIKSLLKNRFNVDIANAPPLHSTSNGQVERFHSTLLEIARCLKLDSGMNDTVNLILQATIEYNKTVHSVTNRRPIDIIHSTPPELANEIVEMVNEAQEKQLRRENVTRRDRTFEVGETVMVKQNNRLGNKLTPRYREELIEADLGTTVLIKGRVVHKDNLR | |
| FBte0000023 . LTR_retrotransposon 1 5143 . . . ID=FBte0000023;name=Dmel\copia;source=X02599;type=LTR;subtype=Copia | |
| FBte0000023 . five_prime_LTR 1 276 . + 1 Ontology_term=SO:0000425 | |
| FBte0000023 . three_prime_LTR 4867 5143 . + 1 Ontology_term=SO:0000426 | |
| FBte0000023 . polyA_signal_sequence 1990 1999 . + 1 Ontology_term=SO:0000551 | |
| FBte0000023 . polyA_signal_sequence 5063 5073 . + 1 Ontology_term=SO:0000551 | |
| FBte0000023 . primer_binding_site 277 291 . + 1 Ontology_term=SO:0005850;bound_moiety=tRNA:M-i-RB | |
| FBte0000023 . CDS 432 4661 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0013437,SWISS-PROT:P04146,NCBI_PROTEIN:CAA26444.1;name=Dmel\copia\GIP;translation=MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE | |
| FBte0000023 . CDS 432 1605 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,SWISS-PROT:P04146,NCBI_PROTEIN:CAA26445.1;name=Dmel\copia\GIP-RB;translation=MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE | |
| FBte0000023 . CDS 4555 4661 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,SWISS-PROT:P04146,NCBI_PROTEIN:CAA26445.1;name=Dmel\copia\GIP-RB;translation=MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE | |
| FBte0000341 . non_LTR_retrotransposon 1 4725 . . . ID=FBte0000341;name=Dmel\Doc;source=X17551;type=LINE;subtype=Jockey | |
| FBte0000341 . CDS 213 1910 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0024789,SPTREMBL:Q04134,NCBI_PROTEIN:CAA35586.1;name=Dmel\Doc\gag;translation=MNQNDIRSQRQCEQDERRLSLQRNNAYFSFVSPQIGDRAPSPSTNSKLLPSANDRPRSCSPSLPASAHKSWSEETASPTPLLSQRQTTVPGNCNTAITSAVTSLATATTSTSSAAQLIIAVPAVNNSAALTVCNNNNARKEESKQKQKSISTVQTGMDRYIQIKRKLSPQNNKAGNQPKINRTNNGNENSAVNNSNRYAILADSATEQPNEKTVGEPKKTRPPPIFIREQSTNALVNKLVALIGDSKFHIIPLKKGNIHEIKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEIIEALKAKNFSAKTAINILNKDKVPQPLFKIELEPELQALKKNEVHPIYNLQYLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGCVVYKELKSRLNKRIATAHTYNKVNFYSPQPIFQPPLTVPSTTPTISFASALKSGLEVPAPPTRTAHSEHTPTNIQQTQQSGIEAMMLSLQQSMKDFMTFMQNTLQELMKNQNILIQLLVSSKSP | |
| FBte0000341 . CDS 1910 4576 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0024790,SPTREMBL:Q04135,NCBI_PROTEIN:CAA35587.1;name=Dmel\Doc\RTase;translation=MASLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAITKHVPRNMVTAEALADLSSDHSPVFLNMLTRPHIVDPPYRLTNFRTNWPRYQKYVCSHIELTTALSTKEDIDKSTETLENILVSAAKASTPPVTYAKPNYIKTNREIERLVLDKRRLRRDWQSNRSPITKHMLKIATRRLTNALKQEEKNSQRSYIEQLSPTSTKYPLWRAHRNLKTPIAPIMPLRSPSGTWFRSDEERASAFADHLQNVFRPNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKLLPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPLARKLIRVCSQSRLHRNDLPAQQ | |
| FBte0000005 . non_LTR_retrotransposon 1 4708 . . . ID=FBte0000005;name=Dmel\F-element;source=AC005198;type=LINE;subtype=Jockey | |
| FBte0000005 . CDS 192 1880 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0041632,TREMBL:P91787;name=Dmel\F-element\gag-r;translation=MSQNDTRAQRQREHDERRLSIQRNNAYFSYVSPTIPNADIERSITHSPGNLLLPTNQERARSCSPALLAPTEAPLPPTTTAGEGPAARSASSSAAPAHGLTKSAKAKPLAINGTAALPAKQNENVNKKAGSTWQTGMDRYITIKRKLSPENSDLGNKPKNTRDNSTLIKNVAPANTNRFALLVDTAEDVPLGSVDIEPKKTKPPPIYIREKSTSRLVNTLIGLIGKDSFHIIPLVRGTINEIKLQTKTEDDYRKVTNYFTAQKIGFYTYQLKSSKGLQVVLKGIESDVTPEEITEALKEKGFYAKNVFNIKNRNRQPQPLFKIELEPENKPPRKNEVHPIYKLQLLLHRRITVEEPHKRNAPVQCTNCQEYGHTRSYCTLRPVCVVCGDLHDSKQCQINKENACEKKCNNCGGNHTANYRGCPIYKELKIRLHKRMNTARAHQGSATLIPSETNPEVIFSKAASFAPWPTFNTNKTTFANVLKSGMTPPTQNSRTPHEVHTKLDTQQNYHPAAQQETKTEAMMQALQQSMMEFMTFMKTTIQDMMRNQNLLIQMLVAQQSNK | |
| FBte0000005 . CDS 1880 4561 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0041633,TREMBL:Q24335;name=Dmel\F-element\RTase;translation=MATLRIATWNANGVSQRKLELAQFLHEKHIDVMLLSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQATSINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPVLIHLRRYAENVKPPTRLTSSKTNWLRYKKYISSHIELSPKLNTESDIESCTCALQSILTAAALTATPKITNNTINSKKTNVQIEQLVHVKRRLRREWQSSRSPTAKQKLKVATRKLANALKQEEDDDQRRYIEQLTPTGTKQKSLWRAHSTLRPPTETVLPIKNSSGGWARSDEDRANTFAAHLQNVFTPNQATSTFALPSYPVNRHQQHTPIVFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIRLNQHQTYHNIIPAHQFGFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKIKISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWRIKVNEQKCKHVTFTLNRQDCPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEKYL | |
| FBte0000466 . terminal_inverted_repeat_element 1 4347 . . . ID=FBte0000466;name=Dmel\NOF;source=X15469;type=DNA;subtype=MuDR | |
| FBte0000466 . CDS 797 3874 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044029,SWISS-PROT:P16320,NCBI_PROTEIN:CAA36201.1;name=Dmel\NOF\ORF;translation=IQQLDTSANLTLNSTFPDDDPEFQITEASKNGPLPILYFNLELDLELWRSIAPKKDQKTEKLQPNWTDTMAKLIYKKVPLPCAFNFRKAKLSDKVDNIWLRIEGYCNDCSSILKGHCLVKPDEQCGIMISVSVPDTRGIPHNKKRRCTGSRRLEIGNELILKKAALWRKEATDNMNDDDPEPSYIPNLPTLRKLREEATNRHLGITKDRDPVSSLYLKKYEGELAGCILDIGLDEFFCIYCTGTQVKTYASRIKTIRKISIDATGSVVLPIQKPNGDSSYVFLYQIVMEGDDSIFPVFQMLSAKHDTASIQFWLSRFISKSGHFPLEVVSDFSLALLNGISLSFNECRIATYIKKCFHSLLMEERTDLPPCYIRLDIAHLIKMICRKNVFKSKLPNLKDFYTRCIGLATTCETKDSFAELIKSVLIVALSQSSGEDEKGDILSSYRNEKYLLARIATFTAPDHKETIEDNCIPEDQEEIDEDVTDFISNIKIAAEEEALNCNSVNCRPNPYFLPELMPPLIKLCKYFVLWTNVMKEKFCSKYDVGSSALVEAYFKDLKNTDMSIFHRPVRADKFVVQHIRCIEAVCKLERAAMKRKTVKTPSFIKENAPKKMCSKETKGFLEEILEESEVEYLLQEENWKVKNKTIKPTEGNDAEDNDTDDENKEMDLSEQPKEKPRGKYLKKCPNVELLYNRPHRRKQDEILHNGGSMGPVWIGKQLLQFKNTCPFDSLVEILSTAYIDNFYYKSLLDDFYTDNLTIELVKKYAVEGVSSSLYCDRGLVLKSFFDEKHQIIKCDANIGSFIEKALNGVPSASSHRTHIKNNHDCRNQKYIHHRLEVIDVEKVGHLDVQEVVIPFIDEFFARTDGECKICGGQQILERQPGPHVILDIEFAMDAFHQIHHNGLPGTTTLLQVPEEILIQEKKYILSGAIEYVPAMGGEIGHYIAYCRRVIGSWEVHNDMCRQWKKFSALNTKMTLHILIYTRKN | |
| FBte0000288 . foldback_element 1 1106 . . . ID=FBte0000288;name=Dmel\FB;source=V00246;type=DNA;subtype=Tc1-Mariner | |
| FBte0000657 . non_LTR_retrotransposon 1 4346 . . . ID=FBte0000657;name=Dmel\G-element;source=X06950;type=LINE;subtype=Jockey | |
| FBte0000657 . CDS 220 951 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF0 | |
| FBte0000657 . CDS 819 1539 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF1 | |
| FBte0000657 . CDS 1530 1858 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF2 | |
| FBte0000657 . CDS 1866 1973 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF2 | |
| FBte0000657 . CDS 1982 2719 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF2 | |
| FBte0000657 . CDS 2727 3008 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF2 | |
| FBte0000657 . CDS 3012 3800 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF2 | |
| FBte0000657 . CDS 3806 3991 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF2 | |
| FBte0000657 . CDS 4006 4095 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\G-element\ORF2 | |
| FBte0000021 . LTR_retrotransposon 1 7469 . . . ID=FBte0000021;name=Dmel\gypsy;source=M12927;type=LTR;subtype=Gypsy | |
| FBte0000021 . five_prime_LTR 1 482 . + 1 Ontology_term=SO:0000425 | |
| FBte0000021 . three_prime_LTR 6841 7411 . + 1 Ontology_term=SO:0000426 | |
| FBte0000021 . polyA_site 7277 7280 . + 1 Ontology_term=SO:0000553 | |
| FBte0000021 . primer_binding_site 482 492 . + 1 Ontology_term=SO:0005850;bound_moiety=tRNA:lys2 | |
| FBte0000021 . start_codon 1080 1082 . + 1 Ontology_term=SO:0000318 | |
| FBte0000021 . CDS 1080 2435 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014965,SWISS-PROT:P10405,NCBI_PROTEIN:AAA70218.1;name=Dmel\gypsy\gag;translation=MSWAHNYRKVKVEYESEDSWEEEQVGQALGRPLDSATVDITMDPNQIQALIDNAVRQALSQQQSQFQTQLNSLAARVQSLQVEAPQIKIYEKVSVNPDVRCDIPLDIIKSVPEFSGTQDEYVAWRQSAIYAYELFKPYNGSSAHYQAVAILRNKIRGAAGALLVSHNTVLNFDAILARLDCTYSDKTSLRLLRQGLEMVRQGDLPLMQYYDEVEKKLTLVTNKIVMTHEQEGADLLNAEVRADALHAFISGLKKALRAVVFPAQPKDLPSALALAREAEASIERSMFANSYAKAVEERAHSGANGKSRFQGKPNKEEQGQDRNPHFTKRPKNNGQTNKDTQAQAPQPMEVDSSSRFRQRTEHYQNHPNESNAFKRRNSSERSTGPRRQRLNNVVQEAPKQKDPKEEYEKTAKAAVEEIDSENEYAPSDDSLNFLGGAPGCRSLNDGWLGEP | |
| FBte0000021 . start_codon 2438 2440 . + 1 Ontology_term=SO:0000318 | |
| FBte0000021 . CDS 2438 5470 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014966,SWISS-PROT:P10401,NCBI_PROTEIN:AAA70219.1;name=Dmel\gypsy\pol;translation=MLIDTDAAKNYIRPVKELKNVMPVASPFSVSSIHGSTEIKHKCLMKVFKHISPFFLLDSLNAFDAIIGLDLLTQAGVKLNLAEDSLEYQGIAEKLHYFSCPSVNFTDVNDIVVPDSVKKEFKDTIIRRKKAFSTTNEALPFNTAVTATIRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLNALQNEPQSDAATIHSELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLVLFRSKSRHLISFTDKSWLLKTLKEVVNPDVVNAIHCDLPTLASFQHDLIAHFPATQFRHCKNVVLDITDKNEQIEIVTAEHNRAHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFSTDRKLFLTCIDKFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDKKTNDTVELILRATIEYNKTVHSVTRERPIEVVHPGAHERCLEIKARLVKAQQDSIGRNNPSRQNRVFEVGERVFVKNNKRLGNKLTPLCTEQKVQADLGTSVLIKGRVVHKDNLK | |
| FBte0000021 . start_codon 567 569 . + 1 Ontology_term=SO:0000318 | |
| FBte0000021 . CDS 567 568 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014964;name=gypsy\env;translation=MFTLMMFIPLVVANARITDFSHANYIPVLDGDVLVFEQRDLLKHSSNLSEYASMIDETQKLSESFPHSHMRKLLEVDTDHLRTLLSVLKVHHRIARSLDFLGTALKVVAGTPDATDLFKIKITEAQLVESNSRQIAINSETQKQINKLTDTINKVINARKGDLVDTPHLYEALLARNRMLSTEIQNLILTITLVKSNIINPTILDHADLKPLVEQDTPIVSLIEASKIRVLQSENSIHILIAYPRVKFSCKKVAVYPVSHQHTILRLDEDTLAECEHDTFAVTGCTDTTHFTFCERSRRETCVRSLHAGNAAQCHTQPSHLREINPVDDGVVIINEAAAHVSTDGSPETLIEGTYLVTFERTATINGSEFVNLRKTLSKQPGIVRSPLLNIVGHDPVLSIPLLHRMSNENLHSIQNLMDDVESEGSPRLWFVAGVVLNFGLIGSLALYLALRRRRASREIQRTIDTFNMTEDGHKLEGGVVNN | |
| FBte0000021 . CDS 5551 7000 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014964;name=gypsy\env;translation=MFTLMMFIPLVVANARITDFSHANYIPVLDGDVLVFEQRDLLKHSSNLSEYASMIDETQKLSESFPHSHMRKLLEVDTDHLRTLLSVLKVHHRIARSLDFLGTALKVVAGTPDATDLFKIKITEAQLVESNSRQIAINSETQKQINKLTDTINKVINARKGDLVDTPHLYEALLARNRMLSTEIQNLILTITLVKSNIINPTILDHADLKPLVEQDTPIVSLIEASKIRVLQSENSIHILIAYPRVKFSCKKVAVYPVSHQHTILRLDEDTLAECEHDTFAVTGCTDTTHFTFCERSRRETCVRSLHAGNAAQCHTQPSHLREINPVDDGVVIINEAAAHVSTDGSPETLIEGTYLVTFERTATINGSEFVNLRKTLSKQPGIVRSPLLNIVGHDPVLSIPLLHRMSNENLHSIQNLMDDVESEGSPRLWFVAGVVLNFGLIGSLALYLALRRRRASREIQRTIDTFNMTEDGHKLEGGVVNN | |
| FBte0000154 . terminal_inverted_repeat_element 1 2959 . . . ID=FBte0000154;name=Dmel\hobo;source=M69216;type=DNA;subtype=hAT | |
| FBte0000154 . terminal_inverted_repeat 1 12 . + 1 Ontology_term=SO:0000481 | |
| FBte0000154 . terminal_inverted_repeat 2948 2959 . + 1 Ontology_term=SO:0000481 | |
| FBte0000154 . TATA_box 107 112 . + 1 Ontology_term=SO:0000174 | |
| FBte0000154 . polyA_signal_sequence 2382 2394 . + 1 Ontology_term=SO:0000551 | |
| FBte0000154 . start_codon 316 318 . + 1 Ontology_term=SO:0000318 | |
| FBte0000154 . CDS 316 2292 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014191;name=Dmel\hobo\T;translation=MAPYIMIVEFLCLWSSVSAVNCPFFVFYDAITSLLGFSIIWKPKEKVTIMAEAADFVKNKINNGTYSVANKHKGKSVIWSILCDILKEDETVLDGWLFCRQCQKVLKFLHKNTSNLSRHKCCLTLRRPTELKIVSENDKKVAIEKCTQWVVQDCRPFSAVTGAGFKNLVKFFLQIGAIYGEQVDVDDLLPDPTTLSRKAKSDAEEKRSLISSEIKKAVDSGRASATVDMWTDQYVQRNFLGITFHYEKEFKLCDMILGLKSMNFQKSTAENILMKIKGLFSEFNVENIDNVKFVTDRGANIKKALEGNTRLNCSSHLLSNVLEKSFNEANELKKIVKSCKKIVKYCKKSNLQHTLETTLKSACPTRWNSNYKMMKSILDNWRSVDKILGEADIHVDFNKSSLKVVVDILGDFERIFKKLQTSSSPSICFVLPSISKILELCEPNILDLSAAALLKERILENIRKIWMANLSIWHKAAFFLYPPAAHLQEEDILEIKVFCISQIQVPISYTLSLESTETPRTPETPETPESLESPNLFPKKNKTISSENEFFFPKLVTESNSNFNESPLDEIERYIRQRVPLSQNFEVIEWWKNNANLYPQLSKLALKLLSIPASSAAAERVFSLAGNIITEKRNRLCPKSVDSLLFLHSYYKNLNNSQ | |
| FBte0000414 . terminal_inverted_repeat_element 1 1653 . . . ID=FBte0000414;name=Dmel\HB;source=X01748;type=DNA;subtype=Tc1-Mariner | |
| FBte0000414 . terminal_inverted_repeat 1 31 . + 1 Ontology_term=SO:0000481 | |
| FBte0000414 . terminal_inverted_repeat 1622 1653 . + 1 Ontology_term=SO:0000481 | |
| FBte0000414 . CDS 387 534 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044055,SPTREMBL:Q27293,NCBI_PROTEIN:CAA25884.1;name=Dmel\HB\T;translation=MLILKLRKEGKTYKDIQKTLKCSAKMVSNAIKYKWKPENRGTKHKTTDIEDRRIVSYSKVYRFASFRDIKSELNLGISDVTIRRRLLNQNFSARSPRKVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKIMLFGGTGSLQYI | |
| FBte0000143 . non_LTR_retrotransposon 1 6083 . . . ID=FBte0000143;name=Dmel\HeT-A;source=U06920;type=LINE;subtype=Jockey | |
| FBte0000143 . five_prime_UTR 1 731 . + 1 Ontology_term=SO:0000204 | |
| FBte0000143 . three_prime_UTR 3497 6083 . + 1 Ontology_term=SO:0000205 | |
| FBte0000143 . polyA_sequence 6077 6083 . + 1 Ontology_term=SO:0000610 | |
| FBte0000143 . start_codon 732 734 . + 1 Ontology_term=SO:0000318 | |
| FBte0000143 . CDS 732 3497 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0016662,REMTREMBL:AAC17188,NCBI_PROTEIN:AAC17188.3;name=Dmel\HeT-A\gag;translation=MSMSDNLFSDDEVLSISSSPEQRSSPFYLNISPMSHGSDNSQINTVIINSKKLPSNQADISLKNSSGAAIKIVNSLSHKKKENTNVNNAQKDPLSLTNTTASTCGAKSSISEGKLSSPPSTSHTYEGKLLTKLTHTHTDFRGAKTSDAMGSFPSLSHSDNSIEKNLSSSTKIGPNASSPPSHAHTHTSKSTDISLESRSKHPALANTDARSIKANANDNGEIFSSLIQIDERKQEERPCTTINAFWSIFKPKPDVTKLSLKRKPTNPTKNTGKKCISPHKKSAYLCPSAQDDLNLNLNPKSSAKPTVVNLPAARILSRPAAKRDLFKSSSSRSPDEQPMSFSEVVAGTGSIFAAPCVPAPLTKTPGKRTNDDLDCSNFKTPNKKLCATSNFVTPSIFPPLITPVFKSKAAQSVYEESKARNGPPPPALACSINASARSAAAPPGIAPLPPHNTDAELPPWKIVPQSRRAPPILVNDVKEIVPLLEKLNYTAGVSSYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGGQRVDIERKNRTREPVQCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCPAYKAEKQKLAANNVDINKIRTIKDATNNFYKRQGPPLRNNTPRLPHSSAILSKSIAEARQEAARKSMLNPFRQNINDRRPRFSSHDTAIQKRLNKWRRNTNKIPKKGRIALKDNAKPRPAHRTSNPAQRHLEDYQDMLRRERSEENDQESEKGTPNTKQVGNDSPPTTSRAARASFKPRIIDDTTPSPKICNPNSQKGLLDDPTTSLANRVDNLEKKIDILMALIIQGRNNNLDMDTSN | |
| FBte0000133 . non_LTR_retrotransposon 1 5371 . . . ID=FBte0000133;name=Dmel\I-element;source=M14954;type=LINE;subtype=I | |
| FBte0000133 . start_codon 187 189 . + 1 Ontology_term=SO:0000318 | |
| FBte0000133 . CDS 187 1467 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0020417,SPTREMBL:Q24362,NCBI_PROTEIN:AAA70221.1;name=Dmel\I-element\gag;translation=MTDPPNIYKITSKTYQSQLGEPKFIIIKRNDNNSFERTSPFIIKKSVDFACGGEVEGCKRTRDGNLLIKTKNELQARKLLKLTKIADEDVTASEHKTLNFSKGVIYCNDLRHIDEDTILQELKPQKVSEVKKIMKRQNPNSNSDTNNITLVETGLIIITFESHKLPEIVRIGYETVRVRDYIPLPLRCKKCLRFGHPTPICKSVETCINCSETKHTNDGEKCTNEKNCLNCRNNPELDHQHSPIDRKCPTFIKNQELTAIKTTQKVDHKTAQHIYFERHGFQTKNTYAKTLTNGTTQRTTNTPSPNIHTNTTQSQQQNPHHTPKSAAQNTSAKTPTTEPAKTTLLSNQPHQHHHHHSYDKLEDMDTDYTPTRKPSTTYSSQLTEDLKIKIFPKDKSNNLSINLKASKLKAKAHKNKHTNNSDSESI | |
| FBte0000133 . start_codon 1938 1940 . + 1 Ontology_term=SO:0000318 | |
| FBte0000133 . CDS 1938 5195 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0020418,SPTREMBL:Q24363,NCBI_PROTEIN:AAA70222.1;name=Dmel\I-element\RTase;translation=MAPSWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFPTTNPQKFYRPFFKLKEANWEQFNALTHQTNKKYPTSHNVNKEAALINRIILYSANLSIPQTSPNTHPYRVPWWNKHLDQLRKEKQLAWKKLNRTITVDNILDYRRKNAIFRYELKKRKKEASSSFTSTIHPTTPSSKIWANIRRFCGLNPAKQIHAITNPVNNETTLASNEIANIFAQHFSDLSGDWNFSEEFRNNKYRNNIHLYTPSPIAQTIEENITYLELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNSHIPQAYKTSLIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSDCLLYVDYLITKSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNLFDDIENWCSYSGASLSLSKCQHLHICRKRHCTCKISCNNFQIPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKATIIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLALGAYRSTPINNLLYESNTPPLEMKRDLQIAKLSQNLILSKNTPIHKFLKPKKANKKKTSTIDRTIKLSLELNLPYKPIKLHKNKPPWTLPNLIDTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFIFTDGSKINYTISFAITTETDVLKYGILPPYSSVLTSETIAILEAIELTKNRRGKFIICSDSLSAVDSIQNTNNNSFYPSRIRSLITQHAPKIKIMWIPGHSGIKGNELADQAAKSASSMPLILTPNINTTDIKKHLKADLATKQKEHIINCSPWYQSINTNTSHPCDYLKQSHPNWTRLDQIKIIRLRLGHTNITHQHYLNPNSIPTCPFCQGDISLNHIFNSCPSLLQTKQDIFNNTNPLDLLSKPNPDNIQKLILFLKKTKLYHKI | |
| FBte0000088 . non_LTR_retrotransposon 1 5020 . . . ID=FBte0000088;name=Dmel\jockey;source=M22874;type=LINE;subtype=Jockey | |
| FBte0000088 . start_codon 300 302 . + 1 Ontology_term=SO:0000318 | |
| FBte0000088 . CDS 300 2051 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0020297,SWISS-PROT:P21330,NCBI_PROTEIN:AAA28674.1;name=Dmel\jockey\gag;translation=ISIALYGISIKTIDIMENSFAQSRPSNGCDKFEKMRKVAGVEPGELRSQLRASCAVVSPNLEGMPTQSAVSSLMVTISSNTNASVTCTISNVQANMICTPTYTDCTTVTTSICPTTPYDNGLPTPLSSLPNKPSKANCPFQAHDRTVNRKRKGVSQPPLPILTPSPSRKTKRQATMPLNEEASTSTAAALNNNRFALLSAEAENMEQDVSDADSDIEDSAARDGGGQSAKYSKPPAICVPSVSDPVTLERALNLSTGSSNYYIRISRFGVSRIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSSQIEQAFSDHGYEVLNIYCPRKSDWKNIQVNEDDNEATKNFKTRQNLFYINLKQGPNVKESLKITRLGRYRVTVERATRRKELLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISDVCLCINCGGDHVSTDKSCPVRAEKAKKLKPRSRLPMTNNIATLKPPQRSSSGYIPAEALRTNISYADIARRNTTQSRARATVQAEVIPTSDNSLNNKFMTLDNSIRAINTRMDELFKLIHETVEANKAFRELVQVLITRIPK | |
| FBte0000088 . start_codon 2048 2050 . + 1 Ontology_term=SO:0000318 | |
| FBte0000088 . CDS 2048 4798 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0015952,SWISS-PROT:P21328,NCBI_PROTEIN:AAA28675.1;name=Dmel\jockey\pol;translation=MTQPTLKIGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFITCGYGMGRLDVQTLQELSSDHLPILAVLHATPLKKPQRVRLLAHNADINIFKTHLEQLSEVNMQILEAVDIDNATSLFMSKLSEAAQLAAPRNRHEVEAFRPLQLPSSILALLRLKRRVRKEYARTGDPRMQQIHSRLANCLHKALARRKQAQIDTFLDNLGADASTNYSLWRITKRFKAQPTPKSAIKNPSGGWCRTSLEKTEVFANNLEQRFTPYNYAPESLCRQVEEYLESPFQMSLPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKRHHPHDLPNLVLT | |
| FBte0000670 . terminal_inverted_repeat_element 1 1435 . . . ID=FBte0000670;name=Dmel\hopper;source=X80025;type=DNA;subtype=Transib | |
| FBte0000670 . terminal_inverted_repeat 1 33 . + 1 Ontology_term=SO:0000481 | |
| FBte0000670 . terminal_inverted_repeat 1403 1435 . + 1 Ontology_term=SO:0000481 | |
| FBte0000015 . LTR_retrotransposon 1 7480 . . . ID=FBte0000015;name=Dmel\mdg1;source=X59545;type=LTR;subtype=Gypsy | |
| FBte0000015 . five_prime_LTR 1 441 . + 1 Ontology_term=SO:0000425 | |
| FBte0000015 . three_prime_LTR 7039 7480 . + 1 Ontology_term=SO:0000426 | |
| FBte0000015 . CDS 548 923 . + 1 Ontology_term=SO:0000316 | |
| FBte0000015 . CDS 1327 1557 . + 1 Ontology_term=SO:0000316 | |
| FBte0000015 . CDS 1749 3062 . + 1 Ontology_term=SO:0000316 | |
| FBte0000015 . CDS 2987 6673 . + 1 Ontology_term=SO:0000316 | |
| FBte0000010 . LTR_retrotransposon 1 5519 . . . ID=FBte0000010;name=Dmel\mdg3;source=X95908;type=LTR;subtype=Gypsy | |
| FBte0000010 . five_prime_LTR 1 267 . + 1 Ontology_term=SO:0000425 | |
| FBte0000010 . three_prime_LTR 5253 5519 . + 1 Ontology_term=SO:0000426 | |
| FBte0000010 . transcription_start_site 178 178 . + 1 Ontology_term=SO:0000315 | |
| FBte0000010 . polyA_signal_sequence 5253 5519 . + 1 Ontology_term=SO:0000551 | |
| FBte0000010 . CDS 296 4780 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0043882,SPTREMBL:Q94885,NCBI_PROTEIN:CAA65152.1;name=Dmel\mdg3\ORF;translation=MDDKIILNDFSLTTLKDWLRILGQNTEGTKTELIARLQDIPTAVRGDCPPEHPQKNAPPGNDIFSSLDFQNCEINTDHVSVNAMNRKESTETGSERETNMFELQQLRAELAEAKAMLNGTRSSLQFQEQQQPEQSKATVSSVIQTAQFTQAGATKENTTFHSPQRSNERAESQRFPVDALALAKETITDYDGKTCARAWITVVKNIARTFNIDDNHLRILLITKLKGNAQVWLHAHPARLIEPIDNLLDQLSLTFGEQSSKAEIRRKFESRKWKTEENFCSYYDEKMALSNGINIDDDELLDQMIEGIPLQNFRTQARIQCFSTPSEMLRAFSNIRLPARREPPVQPTDYKDAIRCANCNSRGHKADICKKPKREPGSCYACGQLGHLVAQCPTRKSVSSNNYVRWFKINFFENAYKPIISECLIDSGSPISIIKKSLINETMKLALVNTCYFGLNNCILKTHGQTTCYVLKGSIKIYFRLIIVCDQSMRYNVILGRDFLTACNLNLDPYTLGMIALRKPMEINKISMFTENDSPEKSLENEIVSPKSLENEIVSSQSLENEIVSPKSLENEIVSPKSFKNATISPKSLENKIVNQQHKETGPISLRDEIVNQQKNVSKSKLSEDEIVNTSKEIVSFKLPKDKNVYEQLNHNFDKEVLRICHVTESELEYKIGENVSNRLQLEFDRLFRNFYINAKRPNEPTVRSEIQLCLKNPKPFSCSPRRLSYTEKDRLQKLLDEYLENGFIRPSDSEYASPIVLVKKKTGDLRMCVDFRKLNKMTMKDNYPLPLIDDLLDRMNEKTVFTKLDLKNGFFHVHVKKESIKYTSFVTPLGQYEWLRMPFGLKNAPSVFQRFVNKIFADMIRENKVVVYMDDILLATENINEHLETLKEIFKRLVENKLELRIDKCEFMQSSIKYLGFIINKDGIMPNDKGIEAIKNFPIPNNVHTVQSFLGLCSYFRRFIKDFSRLAKPLHDILKKDKPFKFGSEEMICFNMLKDKLIQSPVLAIYNHKHETELHCDASSSGFGAVLMQKKEDQKWHPVSFFSKRTTDIESKYHSFELETLAIVYSLRRFRVYLHWRTFKIVTDCNSLILTLSKKELNPRIARWALEFQGYDFEIVHRAGSRMQHVDALSRCTNIMVIQTNSFEDNLVICQGKDTKLKEIRQLLENTENKLYEMRNGIVYKKTNENRLLFYVPIEMEEQVLYKYHNELGHVGRDKMIEAIMKNYWFPNLKQKCSTHISNCLKCISFSPKTGKTEGFLHNIPKGNKPFEIIHIDHYGPVDLARPKKHILVIVDAFTKFVRLYATKTTNTKEVIQSLNDYFRAYSRPKCIISDRGACFTSGDFDSFLKECNVKHIKIATGSPQANGQVERINRSLGPMISKLIEPDQGLHWDLVLEKVEYTLNNTLHRSIKQYPSIMLFGLQQKGQIMDELKEKIEEIGETIEERDLESIRNKGEASQKIAQAYNKEYVDKKRKRSGVFTKGTTSWLKILTQQQA | |
| FBte0000042 . LTR_retrotransposon 1 5461 . . . ID=FBte0000042;name=Dmel\micropia;source=X14037;type=LTR;subtype=Gypsy | |
| FBte0000042 . five_prime_LTR 1 476 . + 1 Ontology_term=SO:0000425 | |
| FBte0000042 . three_prime_LTR 4957 5461 . + 1 Ontology_term=SO:0000426 | |
| FBte0000042 . primer_binding_site 477 489 . + 1 Ontology_term=SO:0005850;bound_moiety=tRNA-leu | |
| FBte0000042 . primer_binding_site 4939 4956 . + 1 Ontology_term=SO:0005850 | |
| FBte0000042 . CDS 540 4415 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0043876;name=Dmel\micropia\polyprotein;translation=MQNRNLAELVKIMQKTPAREQQPSYDVKLPKFNPDAACVEAAKWCSTTDIILTEHPLKGSKLITALSNCMEGTASQWLTQISYQGMTWQEFQELFLQRFETEETPAATFLNLLNSRPTAAECYAVYASRLVTQLTTKWRNMEIEEIAVTTVLAHMANIDSRLQRVLFTSNVRTRSKLQAELKAFTFDKKRHARDDNLGPDQKNRKASPVVCHFCSKPGRRIAECRSKMRQDRRAKPQREKSNVTCYRCGQPGHFSNQCPKNGTAAKQDVTQQKTVNQCCVTEPKGSLHQRGEIYPICFDSGAECSLIKDDISSKLSGKRINNTVMIKGIGGGSVCSTLQILSEVTINENIMEILFHVVPNEEMRNDILIGREILKQGFYVILTSDNFKVVKSKTVNNCSVTERSFTLSDIDTELVDNEKAQLIELLEKHSTSFTNGIPHTRVNTGEMKIRLIDPTKTVQRRPYRLSPEEREVVRMQVSELIRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDFRELNSNTISDKYPLPLISDQIARLRGANYFTCLDMASGFHQIPIHPESVEYTAFVPDGLKNAPSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALERLKTVLNVLTKAGFTFNLAKCSFLKTTVQYLGYEVRAGEIRPNVRKIASLSSLPPPQTVSGVRQFIGLASYFRKFVSGFSQLMKPLYSLSSGSGKITWSAELEEIRLKVVTILTNEPALVIFDPQYPIELHTDASACGYGAILLHRIESKPHVIEYFSKTTTSVESRYHSYELETLAVVKAVKHFRHYLIGREFVVYTDCNSLKASRTKIDLTPRVHRWWAYLQSFNFEIQYREGKRMAHVDFLSRNPLSPEHILSINKIPEKRVNLSEISSTWLLAEQRLDLEIIEIVNKLESDELAENLAKTYDLRKGVLYRKVQRRGRTSYLPVVPRAFKWSVINQVHESIMHLGWQKTLDKVYQYYWFAKMNKYVRKFVSNCITCRSVKSSSGKVQAELHSIPKTSIPWHTIHIDITGKLSGKSDLKEYVIVQIDAYTKFVYLYHTLKIDAESCVNAMKSSISLFGVPDRIIADQGRCFTSSKFSEFCVSQKVELHLIATGMSRANGQVERVMETLKNLLSVVESSQRSWQDALGEVQLALNCTISRATDASPLEMLIGKQARPLGLVPPCETECEIDLATVRAHATENMNSLASYDKSRFDSSRAAVDKHHVGDYVLLRNEERHQTKLDPKFRGPFLVTEVLEGDRYTLKSLTSNRSFKYCHESIKMPDAEIPNELNENVEQ | |
| FBte0000037 . terminal_inverted_repeat_element 1 2907 . . . ID=FBte0000037;name=Dmel\P-element;source=X06779;type=DNA;subtype=P | |
| FBte0000037 . terminal_inverted_repeat 1 31 . + 1 Ontology_term=SO:0000481 | |
| FBte0000037 . terminal_inverted_repeat 2877 2907 . + 1 Ontology_term=SO:0000481 | |
| FBte0000037 . CDS 153 442 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0013311;name=Dmel\P\T;translation=MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIARNTEMLRNSGNIEEDNSESWLNLDFSSKENENKSKDDEPVDDEPVDEMLSNIDFTEMDELTEDAMEYIAGYVIKKLRISDKVKENLTFTYVDEVSHGGLIKPSEKFQEKLKELECIFLHYTNNNNFEITNNVKEKLILAARNVDVDKQVKSFYFKIRIYFRIKYFNKKIEIKNQKQKLIGNSKLLKIKL | |
| FBte0000037 . CDS 501 1168 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0013311;name=Dmel\P\T;translation=MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIARNTEMLRNSGNIEEDNSESWLNLDFSSKENENKSKDDEPVDDEPVDEMLSNIDFTEMDELTEDAMEYIAGYVIKKLRISDKVKENLTFTYVDEVSHGGLIKPSEKFQEKLKELECIFLHYTNNNNFEITNNVKEKLILAARNVDVDKQVKSFYFKIRIYFRIKYFNKKIEIKNQKQKLIGNSKLLKIKL | |
| FBte0000037 . CDS 1222 1947 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0013311;name=Dmel\P\T;translation=MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIARNTEMLRNSGNIEEDNSESWLNLDFSSKENENKSKDDEPVDDEPVDEMLSNIDFTEMDELTEDAMEYIAGYVIKKLRISDKVKENLTFTYVDEVSHGGLIKPSEKFQEKLKELECIFLHYTNNNNFEITNNVKEKLILAARNVDVDKQVKSFYFKIRIYFRIKYFNKKIEIKNQKQKLIGNSKLLKIKL | |
| FBte0000037 . CDS 2138 2709 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0013311;name=Dmel\P\T;translation=MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIARNTEMLRNSGNIEEDNSESWLNLDFSSKENENKSKDDEPVDDEPVDEMLSNIDFTEMDELTEDAMEYIAGYVIKKLRISDKVKENLTFTYVDEVSHGGLIKPSEKFQEKLKELECIFLHYTNNNNFEITNNVKEKLILAARNVDVDKQVKSFYFKIRIYFRIKYFNKKIEIKNQKQKLIGNSKLLKIKL | |
| FBte0000037 . CDS 153 442 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;translation=MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIGMTNLKECVNKNVIP | |
| FBte0000037 . CDS 501 1168 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;translation=MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIGMTNLKECVNKNVIP | |
| FBte0000037 . CDS 1222 1994 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;translation=MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEPEPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSDDISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISESKTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQKVKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIMRTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYIIGMTNLKECVNKNVIP | |
| FBte0000037 . intron 443 500 . + 1 Ontology_term=SO:0000188 | |
| FBte0000037 . intron 1169 1221 . + 1 Ontology_term=SO:0000188 | |
| FBte0000037 . intron 1948 2137 . + 1 Ontology_term=SO:0000188 | |
| FBte0000568 . terminal_inverted_repeat_element 1 2121 . . . ID=FBte0000568;name=Dmel\pogo;source=X59837;type=DNA;subtype=Tc1-Mariner | |
| FBte0000568 . terminal_inverted_repeat 1 21 . + 1 Ontology_term=SO:0000481 | |
| FBte0000568 . terminal_inverted_repeat 2101 2121 . + 1 Ontology_term=SO:0000481 | |
| FBte0000568 . intron 1438 1541 . + 1 Ontology_term=SO:0000188 | |
| FBte0000118 . non_LTR_retrotransposon 1 5356 . . . ID=FBte0000118;name=Dmel\R1A1-element;source=X51968;type=LINE;subtype=R1 | |
| FBte0000118 . CDS 319 1731 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044825,SWISS-PROT:P16424,NCBI_PROTEIN:CAA36226.1;name=Dmel\R1A1-element\ORF1;translation=PVSASIRLLDSSKGGATIGATPMESDSSVSALSGSSASKVSRRGRRRSHLASKSSAPTQAKLVALASNGVPEPVGVLEEAFSSLEDARAATSNAANDAAPPAAAPAVDHTVAPDVSTAAKIAATTATAATAAARAGQAAMMAELSATQRMVRNSFRSLGGVDTEELSCAISRYDELVMALMLRCGELETRLAMPPPPPPPSKANTTAANAPQMPQVAPIAAPRTTKVRETWSAVVKCDDPALSGKAIAEKVRTMVAPSLGVRVHEVRELPSRWWCDHSYSSVGELQKVMASKRFAELGLNVARNAAEKPKVIVYDVDTAIGPEEFMQELHENNFDSEMTLAQFKKSVHLVTKAWSATDGATVNVTLEVDDRAMAKLDVGRVYIKWFSFRCRSQVRTYACHRCVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPVDCRNCRHRGQPSGHYMLSNACPIYGALLARVQARH | |
| FBte0000118 . CDS 1728 4790 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044824,SWISS-PROT:P16425,NCBI_PROTEIN:CAA36227.1;name=Dmel\R1A1-element\ORF2;translation=TLMFSFIQANCGRGRAATIELGVRLRRSESMFALVQEPYLGGDEMDVLPEGMRVFTDRRGKAAILVDHQEAICMPVETLTTDYGVCLVVKGSFGSIFLCAAYCQFDAPLEPYLRYMDAVLLQASRTPAILGLDANAVSPMWLSKLSRHAEGQANYRRGELLSEWMLEARVAALNQSTEVYTFDNHRATSDIDVTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTARSVESIAPVPSWNFSNARWRLFKEEMVSRIAELPENFSESPLDQQVSTLRSIVHSVCDTALGRKLTRSPSRRARWWTADLCAARREVRRLRRLLQDGRRRDDDAAVELVVVELRRASAYYKKLIGRAKMDDWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLRVNGELITDWGDCARVLLRNFFPVAESEAPTAIAEEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGFRQGRCVEDAWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCREMGLWQSFFSGRRAVIRSSSGTVEVPVTRGCPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTSKTVIMLLKGALRRAPTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDTAEQVAAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAIKYKLKRGFPLEENDWLYGEDIACLSWEQRKTRLEECLIQSWQNRWDDDSEPGRVTHRFIPYVTLAYRDPSFGFSMRTSFLLTGHGSFNAFLHGRALSDTTACACGDPYEDWMHILCACPLYADLRDLDGLGVQRLGENWIFEGILDDQEKTQRLAMFAEEVFLRRRAL | |
| FBte0000030 . non_LTR_retrotransposon 1 3607 . . . ID=FBte0000030;name=Dmel\R2-element;source=X51967;type=LINE;subtype=R2 | |
| FBte0000030 . CDS 181 3351 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0016699,SWISS-PROT:P16423,NCBI_PROTEIN:CAA36225.1;name=Dmel\R2-element\ORF;translation=FERKNFSDGLVPQRKFIHIGTTSTNNEPRIPLHNLMTTRPSVDIFPEDQYEPNAAATLSRVPCTVCGRSFNSKRGLGVHMRSRHPDELDEERRRVDIKARWSDEEKWMMARKEVELTANGCKHINKQLAVYFANRSVEAIKKLRQRGDYKEKIEQIRGQSALAPEVANLTIRRRPSRSEQDHQVTTSETTPITPFEQSNREILRTLRGYSPVECHSKWRAQELQTIIDRAHLEGKETTLQCLSLYLLGIFPAQGVRHTLTRPPRRPRNRRESRRQQYAVVQRNWDKHKGRCIKSLLNGTDESVMPSQEIMVPYWREVMTQPSPSSCSGEVIQMDHSLERVWSAITEQDLRASRVSLSSSPGPDGITPKSAREVPSGIMLRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSINWDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIGPKLQRLTKAPLKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLPLDVPIAFVHAPPKSGGLGIPSLRWVAPMLRLRRLSNIKWPHLTQNEVASSFLEAEKQRARDRLLAEQNELLSRPAIEKYWANKLYLSVDGSGLREGGHYGPQHGWVSQPTRLLTGKEYMDGIRLRINALPTKSRTTRGRHELERQCRAGCDAPETTNHIMQKCYRSHGRRVARHNCVVNRIKRGLEERGCVVIVEPSLQCESGLNKPDLVALRQNHIDVIDTQIVTDGHSMDDAHQRKINRYDRPDIRTELRRRFEAAGDIEFHSATLNWRGIWSGQSVKRLIAKGLLSKYDSHIISVQVMRGSLGCFKQFMYLSGFSRDWT | |
| FBte0001005 . terminal_inverted_repeat_element 1 1736 . . . ID=FBte0001005;name=Dmel\S-element;source=U33463;type=DNA;subtype=Tc1-Mariner | |
| FBte0001005 . terminal_inverted_repeat 1 234 . + 1 Ontology_term=SO:0000481 | |
| FBte0001005 . terminal_inverted_repeat 1503 1736 . + 1 Ontology_term=SO:0000481 | |
| FBte0001005 . start_codon 404 406 . + 1 Ontology_term=SO:0000318 | |
| FBte0001005 . CDS 404 1441 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044019,REMTREMBL:AAC47095,NCBI_PROTEIN:AAC47095.1;name=Dmel\S-element\T;translation=MPGKRLAFEVTQLIYYNHQLGKSIPELVEIFSVSRKTVYNILNRXXKEGRLEPKSGGGCKTKINKRVDRLIMRKAIANPRISVRSLAQDIREECHLTVSHETVRQVILRHRYSSRVARKKPLLSEINIEKRHSFAVSMMDHAEEYWDDVIFCDETKMMLFYNDGPSRVWRKPLSALETQNIIPTIKFGKLSVMIWGCISSHGVGKLAFIESTMNAVQYLDILKTNLKASAEKFGLFSNNKPNFKFYQDNDPKHKEYNVRNWLLYNCGKVIDTPPQSPDLNPIENLWAYLKKKVAKRGPKTRQQLMAAIIEEWEKIPLEYDLKKLIHSMKKRLQLVAKANGGHTKY | |
| FBte0000333 . LTR_retrotransposon 1 7546 . . . ID=FBte0000333;name=Dmel\springer;source=AF364549;type=LTR;subtype=Gypsy | |
| FBte0000333 . five_prime_LTR 1 403 . + 1 Ontology_term=SO:0000425 | |
| FBte0000333 . three_prime_LTR 7143 7546 . + 1 Ontology_term=SO:0000426 | |
| FBte0000333 . start_codon 1058 1060 . + 1 Ontology_term=SO:0000318 | |
| FBte0000333 . CDS 1058 2422 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044343,SPTREMBL:Q967T6,NCBI_PROTEIN:AAK52057.1;name=Dmel\springer\gag;translation=MSESFRQYRNSKKCASDSESESDDSTENSVRKNTPTNAFTAYKMSLETEQIKALIRALQEQALESQRREADLRKTIQDLAGQVAAIQIAPARAEAPPIKVYRPVEITGLVPCGETLDAVKCLPDFMGTQETYVSWRQAANAAYHMFRKYEDSSRHYQAVVIIRSKVKGPADAVLSSFGTILNFDAIISRLDFTYSDKRPIHVIEQELGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSYEASAATVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMPSALALAQEVESNHERYTFATSFARSQEDRDHKQYPKVQERQRAPPQAGSQGSAGKNPHFTKQHRAQVHSAPRSDRMARENMPEPMDVDPSLSRMQPSHAPAYPKSKPAASGRSVPPKRQRVNHVAQASDDLDKVYNTAASSAAVKVDDDSILEYDSDTINFLGESPCYPSSDEE | |
| FBte0000333 . start_codon 2434 2436 . + 1 Ontology_term=SO:0000318 | |
| FBte0000333 . CDS 2434 5475 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044342,SPTREMBL:Q967T5,NCBI_PROTEIN:AAK52055.1;name=Dmel\springer\pol;translation=MKLLIDTGAAKNFIRPFKGLKGVRPVQSPFTIHSIHGVTTITKKCFVSIFNLKATFFLLPDLTSFDAIVGLDLLKQAGASLCLASGKLKWGSGAEQIDFHTCPDVNFTKVDCSDAPPLIKDAFLKMLGNRKKAFADPNEALPYNTSVVATIRTVDEEPIYAKLYPYPMGAADFVNGEIQELLKNGIIQKSKSPYNNPIWVVDKKGTDDAGNKKMRLVLDFRKLNERTVPDRYPMPNISMILGNLGKAKYFTTLDLKSGYHQITLAERDREKTAFAVNGGKYEFRRLPFGLRNAASIFQRTIDDILREQIGKFCYVYVDDVIIFSEDENDHVKHVDWVLKSLYDANMRISAEKSRFFKKSVSFLGFIVTNNGAATDPEKVKAIKEFPEPKNVFEVRSFLGLASYYRCFIKDFASIARPISDILKGENGSVSRHRSRSIQVEFSEAQQRAFEKLRNILASEDVILRYPDYKKAFDLTTDASAYGIGAVLSQEGRPITMISRTLSDREVNYATNERELLAIVWALAKLRHYLYAVKEINIFTDHQPLTFAVSESNPNAKIKRWKARIDESGARIFYKPGRNNLVADALSRQQLNVVEEQEPESCAATIHSELSLTHTIESTDKPVNCFQNQIILEEARSHWKRTFILFGNKRRHSINFSCKQALLEELANIIIPNGVNAFHCDLHTLALIQDDVVRQFPATKFWHCKNRVTDIFAMQERKEILTVEHNRAHRSAQENVKQVLSEYYFPKMTKLASEIAANCKTCAKAKYDRHPKKQELGETPVPTHVGEILHIDIFSTDKKYFLTCVDKFSKFAMVQPILSRTIEDLKAPLLQLMNVFPKAKTIYCDNEPSLKSQTIVAMLENHFGVSISNAPPLHSVSNGQVERFHSTLIELARCLKIDKGISDTVELVLLATARYNMSIHSVINKKPAEVMRADPDDPHTDVQEKIKNAQILTRKRENASRQNRVFQVGDKVLVKSNRRLGNKLTPLCEEKTIEADLGTTVLIKGRVVHKDNLK | |
| FBte0000333 . start_codon 5870 5872 . + 1 Ontology_term=SO:0000318 | |
| FBte0000333 . CDS 5870 7147 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044344,SPTREMBL:Q967T4,NCBI_PROTEIN:AAK52056.1;name=Dmel\springer\env;translation=MLDMFPQSHMKKLLSVDIAHLRDMLDSLSIHHRVARSLDFLGTALKVVAGTPDAEDFEKVKFTEARLVDAHNSQIEINTKTQVRINELTDTINKLLKISKSAQIDTGHLYETLSTRNRIIVMELQNLMLTITLAKINVVSPNFLDHADLESIWGEEPTNTPIREILSVASVKVLQSLNILHFIIKFPKIIMACNKVTILPVVHHDTVLRLKDNVVAECNREIRTVKNCSITPGATFCQLSSVSSCAQELHAGVVAHCDAQQSDLHPITYVDEGIIVINDRPALVRVDNGTAIHIRGTHLITFIESAMVNETVFFNHDMVQNRAPGVANSPVLNISMKHEVLSLPYLHRLSEKNLEQIRNFEKDVDGYRLSQIALVAGAIFCALICIGLTWQRTTRAKKSTAQLKEVLAQIGSAEGGLNLEEGIVN | |
| FBte0001208 . non_LTR_retrotransposon 1 11124 . . . ID=FBte0001208;name=Dmel\TART-C;source=AY600955;type=LINE;subtype=Jockey | |
| FBte0001208 . direct_repeat 1 331 . + 1 Ontology_term=SO:0000314 | |
| FBte0001208 . direct_repeat 10383 10713 . + 1 Ontology_term=SO:0000314 | |
| FBte0001208 . five_prime_UTR 1 205 . + 1 Ontology_term=SO:0000204 | |
| FBte0001208 . three_prime_UTR 6629 11102 . + 1 Ontology_term=SO:0000205 | |
| FBte0001208 . non_LTR_retrotransposon_polymeric_tract 11103 11124 . + 1 Ontology_term=SO:0000433 | |
| FBte0001208 . start_codon 206 208 . + 1 Ontology_term=SO:0000318 | |
| FBte0001208 . CDS 206 3349 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014071,NCBI_PROTEIN:AAT12844.1,SPTREMBL:Q6J4U8;name=Dmel\TART-element\gag;translation=MDGHNGDINEGWATVLSISSDDSNQLSSPPSIIVSSLDTTPTSNETTIVRRSLHNPKADMKSYRFENIVLNENKNTILPDPLFVDKCGNTANTTEANEKKPANSPFPISIIKNLSTSSPLTHVDTPTQEDDASAFNTLKAAKTARIIFPTHTQIKPAKPSPPSKELSTNSAPKTLSYTDKITVTQKNLPDKTHVDRPTQDDDINATKASKTAKIISTQLHLRETKPTQPAKDPSPRTQKPIANKAAETLTHTDKLIASQNLVPAKTHINSPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKNISPLTQKQFTSESAGTHTHTDKHKNTASQNLFSAKTHINSPTQHNDTSAATASKTAKLILSPHSHLSETKPTQPALSPSPLSQKQITSIAAKTLTHTNKHTASQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTKPIKPAINALHAAQDTNPSPAISAVTYTDKPTATQNIFPVKTFAELIRENAKRSPTPIENPPQAKHDSAALGRPPTAARKNLNKTLISPKTPGKRRGDCLDEGLLQTSNKKVRIRDDFSDDDLGVTNLLSETPLFKSKAAIKIRQDSRRESLQKSAEMDTAPAISPSNAAADPDLPPWKTVPASRKPPSIFLSNIQQIIPLIEKLNYKAGVNSFTTKSELGNNIRIQAKTMDAYNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLIKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHASVSCTKPKNLPATCANCNGSHVSSYKGCPVFQEAKQRLSINKIQSLHSQPTHLQTPRNKHPYPKPTHIQTPLNKQPYTHPLPRTLVNNTKLPAKRIQGKKISQRNLSINKRLNRIRTLDRKPRNETSPPTTSKKVLASLEESRKNPNSALNPANTHLTHFRPPPLAQNIPNDESKELSGEQYLLNRIEGMEKKLNNLLEIVTRLLSQGKDCPKSPKNPFRDPIFV | |
| FBte0001208 . start_codon 3350 3352 . + 1 Ontology_term=SO:0000318 | |
| FBte0001208 . CDS 3350 6628 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014072,NCBI_PROTEIN:AAT12845.1,SPTREMBL:Q6J4U7;name=Dmel\TART-element\pol;translation=MLFLVTSEVTFPMTRECNRDILKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPASSKRGGVATIVNSSLRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTMGGQTKLILCGDWNAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSICKRLGRYEKRISSSAHLSSDHLPILLEINLDIKTISLQKQNNNILKKTTNIELFKNVLERKILLNTEIRVAEDINDAINIFIKNIKDSAAESTPSPRIPDNHRRRYGQANRNSHTLTLDENTSRLLEEKRIQSRIFKATRTNEDKTKLKAAENRLKKVIKILREKRINEQIEGIDTNNPDRMRKIWRLLSEGKKMNQPNFPLKLETKKGPKWTKTIKETTEAFVSHLEGRFKPNKIVPDYHIDKVNTGLRIIKESMLTERHNLNKNPHNQPITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIFTLKNDLPTNSMNVKIKGQTIKKESKQSYLGVTLDSKLTLSSHVTKLLGKYSTAYRKLTWILNGRSKLPTKTKILILKSVLSPIWQYAIAAWGPLVTDAQIRRVQVEENRKIRDICRAGRYTRNQTIRDLFGVKTVEEFYQQAMHRFSETIKSHPNIAVRRILSRHYIPNRLERSRQRYFKMTNDHITQKQTGLALSPKLLKIPDIDDCRTVKKRSEREKIRQMHLTELPTLLRLEEEEEELKRIKKQEEREKRERENQKWPPDRWCELEINRYNKQYRKGDLTRQEVIEKFRGQPLNVQRIILPDYEGD | |
| FBte0001206 . non_LTR_retrotransposon 1 13424 . . . ID=FBte0001206;name=Dmel\TART-A;source=AY561850;type=LINE;subtype=Jockey | |
| FBte0001206 . direct_repeat 1 1850 . + 1 Ontology_term=SO:0000314 | |
| FBte0001206 . direct_repeat 11179 13028 . + 1 Ontology_term=SO:0000314 | |
| FBte0001206 . five_prime_UTR 1 1759 . + 1 Ontology_term=SO:0000204 | |
| FBte0001206 . three_prime_UTR 7953 13411 . + 1 Ontology_term=SO:0000205 | |
| FBte0001206 . non_LTR_retrotransposon_polymeric_tract 13412 13424 . + 1 Ontology_term=SO:0000433 | |
| FBte0001206 . start_codon 1760 1762 . + 1 Ontology_term=SO:0000318 | |
| FBte0001206 . CDS 1760 4672 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,GI:45594384,NCBI_PROTEIN:AAS68533.1;translation=MDGQNVNQSGGWASVLSISSDDGNCSSSPPSAIVSSLDTTPTSNETTIVRRSLYQTNADMKSYDFENIVLNENKNTILPDPLFVDKCGSTANTTEANEKQPADSPFPISISKNFSTSSPLTHVDTPTQEDDASAFNTLKAAKTARIIFPTHTQIEPAKPSPPSKELSSNSAPKTLSYTDKITATQKNFPTKTHVDTPTQDDDTNATKASKTAQIDSSHSQLHETKPTQPAKNPSPLTQKLTTNKTAKTHTHTDKPTASQNLFPTKTHINSPTQYNDTNASTASKDGKINLSSHSHLRETKPTQPAKNPSPLSQKQITSIAANTLTHTNKHTASQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTKPIKPAINALHPAQDTNPSPAISAVTYTDKPTATQNIFPAKTFAELVRENAKRSQTAMQNPPHAKHDSAALGRLPSAARKNLTKTLSSPKTPGKRRGDCLDEGLLQTSNKKVRIRDDFSDDDLGVTNLLSETPIFKSKVAIKIRQDSRRESLQKSVEMDTAPAISPSNTAAEPDLPPWKTVPASRKPPSIFLSNIQQIIPLIEKLNYKAGVNSFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIRHLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCPAFQEAKQRLSINKIQSLHSQPTHLQTPRNKHPYPKPTHFQTPRNKQSYTHPPPRTTVNNTKLPAKRIQGKKLSQRNISINKRLNRIRAFDKKPRKETSPPTTSKKVLASLEESSKNPNSVLNPANTHLTHFCPPPITQDIPNDEPTEPSQEQYLLNRIEGMEKKLNNLLEIVTRLLNQGRECPKSPKNPFRDPILI | |
| FBte0001206 . start_codon 4710 4712 . + 1 Ontology_term=SO:0000318 | |
| FBte0001206 . CDS 4710 7952 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,GI:45594385,NCBI_PROTEIN:AAS68534.1;translation=MTRACNRDILKIAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSSDHLPILLEINLDTSTLFLQKQNNNILKKTTNIELFKTVLERKILLNTEIRVAEDINDAINIFIKNIKDSADESTPSPRIPDNLRRMHGQANRNSHTLTLDENTSRLLEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEGIDTKNPDRMRKMWRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKPNNNVPDYHINTVNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEEFYQQAVHRFSETTKSHPNVAVRRIFSRHYIPNRLERSRQRYLKMTMDHITQKQTGLTLSPKLLKIPDLDDCRTLKKRSEREKIRQTHLTELPTLLRLEEEEAELKRIKKQEERERRERENQKWPPDRWCELEINRYNKKYRNGDLTRQEIIEKFRGQPLNVQRIILPDYEGD | |
| FBte0001207 . non_LTR_retrotransposon 1 10654 . . . ID=FBte0001207;name=Dmel\TART-B;source=U14101;type=LINE;subtype=Jockey | |
| FBte0001207 . direct_repeat 1 1046 . + 1 Ontology_term=SO:0000314 | |
| FBte0001207 . direct_repeat 9031 10076 . + 1 Ontology_term=SO:0000314 | |
| FBte0001207 . five_prime_UTR 1 961 . + 1 Ontology_term=SO:0000204 | |
| FBte0001207 . three_prime_UTR 7386 10637 . + 1 Ontology_term=SO:0000205 | |
| FBte0001207 . polyA_signal_sequence 10479 10484 . + 1 Ontology_term=SO:0000551 | |
| FBte0001207 . polyA_signal_sequence 10600 10605 . + 1 Ontology_term=SO:0000551 | |
| FBte0001207 . non_LTR_retrotransposon_polymeric_tract 10638 10654 . + 1 Ontology_term=SO:0000433 | |
| FBte0001207 . start_codon 962 964 . + 1 Ontology_term=SO:0000318 | |
| FBte0001207 . CDS 962 4093 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014071,SPTREMBL:Q23999,GI:603663,NCBI_PROTEIN:AAC46493.1;name=Dmel\TART-element\gag;translation=MDGHNGDQSEGWATVLSISSDDSNSLSSPPSIIVSSLDTTPTSHETTIVRRSLYQTNADMKSYDFENIVLNENKNTILPDPLFVDKCGSTANTTEANEKKPANSPFPISISKNFSTSSPLTHVDTPTQEDDASAFNTLKAAKTARIIFPTHTHIKPTKPSPPSKELSTNSALKTLSYTDKITGTQKNLPDKTHVDTPTQDDDINATKASKTAKIISTQTHLGETKPIQPAKDPSPRTQKPIAHKADETLTHTDKLTASQNLVPAKTHINTPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKNISPLTQKQFTSESAGTHTHTDKHKNTASQNLFSAKTHINSPTQHNYTSAATASKTAKLILSPHSHLSETKPTQPALSPSPLSQKQITSIAAKTLTHTNKHTASQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTKPIKSAINALHPAQDTNPSPAISAVTYTDKPTATQNIFPVKTFAELVRENAKRLPTPMQNSHQAKNDSAALGRPPTAARKNLNKTLISPKTPGKRRGDCLDEGLLQTSNKKVRIRDDFSDDDLGVTNLLSETPLFKSKAAIKIRQDSRRDSLQKSAEMDTAPAISPSNTAADSDLPPWKTVPASRKPPSIFLSNIQQIIPLIEKLNYKAGVNSFTTKSELGNNIRIQAKTMDAHNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCPAFQEAKQRLSINKIQSLHSQPTHLQTPRNKHPYPKPTHLQTPRNKQPYTHPLPRTSVNNTKLPAKRIQGKKISQRNLSINKRLHRMKKPRKETSPPTTSKKVLASLEESRKNPNSVLNPANTHLTHFRPPPLAQNIPNDEPKELSGEQYLLNRIEGMEKKINNLLEIVTRLLRQGKDCPKSPKNPFRDPIFV | |
| FBte0001207 . start_codon 4131 4133 . + 1 Ontology_term=SO:0000318 | |
| FBte0001207 . CDS 4131 7385 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0014072,REMTREMBL:AAC46494,GI:603664,NCBI_PROTEIN:AAC46494.1;name=Dmel\TART-element\pol;translation=MTRADNRDILKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALKPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRFEKRISSGADLSSDHLPILLEINLDTNTLFLQKQNNNILKKNTNIELFKKVLERKILLNTEIRVAEDINDAISTFMKNIKDSAAESTPSPRIRDNPRRRHRQANRNSHTLALDENTSRLLEEKRILSRVFKATKNYEDKAKLKAAENRLKKAIKILRENRINEQVEGIDTSNPDRMRKMWKLLDEGKRTNQPNFPLKLETQKGPKWTKTIKETTETFVSHLEGRFKPNNNVPDYHIDRVNTGLRIIKESMLTERHNLNKNPHNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGHVIFTLKNDLPTSLRTMKIKGQVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVEEFYQQALHRFSETIKSHPNIAVRRIFTRHYIPNRLERSRQRYLKMTNEHITQKQTGQTLSPKLLKIPDLNDCRTLKKRNERDKIRQTHLIELPTLLRLEEEEEELRRIKKQEERERREKETQKWPPDRWCELEINLYNKQYRRGDLTRQEIIQKFRGQPLNVQRIILPDYKGDQEHN | |
| FBte0000179 . LTR_retrotransposon 1 8526 . . . ID=FBte0000179;name=Dmel\Tirant;source=X93507;type=LTR;subtype=Gypsy | |
| FBte0000179 . five_prime_LTR 1 417 . + 1 Ontology_term=SO:0000425 | |
| FBte0000179 . three_prime_LTR 8109 8526 . + 1 Ontology_term=SO:0000426 | |
| FBte0000179 . CDS 1866 2999 . + 1 Ontology_term=SO:0000316 | |
| FBte0000179 . CDS 3239 6505 . + 1 Ontology_term=SO:0000316 | |
| FBte0000179 . CDS 6683 8146 . + 1 Ontology_term=SO:0000316 | |
| FBte0000660 . LTR_retrotransposon 1 5034 . . . ID=FBte0000660;name=Dmel\flea;source=Z27119;type=LTR;subtype=Gypsy | |
| FBte0000660 . five_prime_LTR 1 275 . + 1 Ontology_term=SO:0000425 | |
| FBte0000660 . three_prime_LTR 4757 5034 . + 1 Ontology_term=SO:0000426 | |
| FBte0000660 . polyA_site 5006 5011 . + 1 Ontology_term=SO:0000553 | |
| FBte0000660 . polyA_site 5019 5024 . + 1 Ontology_term=SO:0000553 | |
| FBte0000660 . CDS 760 4761 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0043491,SPTREMBL:Q24262,NCBI_PROTEIN:CAA81643.1;name=Dmel\flea\polyprotein;translation=MFTRTPPTNKKLNTDQIQAILENESEDESRKEKMNEEDQKLAPVGEAEAKKQNKDASAKVEEKFEQMMNTLTQSMLAKSKQEGQVIIAAEKFEKVVSDCDGKSIPIKKWFEIFEKNAEAYELSEKQKYVQARSKMIGSAELFLESECVSGYTELKELLIEEFSGSYNSAVIHKKLQDRKKKREETLHDYLLQMKKIAALGEVETVALITHIVNGLDIKKEYKGAMLRCKTLKELKQEFEIYESLNIVDKPNIQPKPKQITQGVKADHCFNCGSREHKRKDCTLPTKCFSCNQEGHISSKCPEKVNSMRIHVDSARTKPVIINGIIINCLVDTGSDVTIIKEAIFKKMKDVDLNRTATVLRGLGNASTQPIGCFRALIKTDQVEASHNVLVVHDSKFSCDGIVGHDFISKFRLICSAEGYTFLDLEADKKQAVEYSQMFNICEESSFTVAPQYREDVERMIERTYETPPKQIKQCPVELKIIPDGVIKPFRHGHTRLSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNTMVLMDCFPVPIMEEVLEKLQSAKWFTTMDLQNGFFHVAVEEASKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFVQFIFQELINSNIMQLYMDDIIVYAATPEECMEKTEMVLKRAAEFGLKIKWKKCNFMQRRIHFLGHIIEGGQICPGKEKTSAVNSFGTPQNVKAVQGFLGLTGFFRKFIPGYAQIARPLTDLLKKDAIFNIGPVEQQSVNKLKEILVNEPVLRIYSREAETELHTDASKDGLGAVLLQKFEGSFHPVCFWSRKTTKAESNRHSYYLEVKAAYLALKKFRHYLLGVPFKLVTDCVAFKQTTKKADVPREVGPWILYMQDFNFQPEHRAGERMRHVDFLSRHPQACMMITSELTARIKKSQQNDDSIRAILEILKDRLFQPYKLKGGLLYSMVNGNELLVVPALMEREVIQSAHEVGHLSLQKTMHSIQQQFFYFLIWEYKVKKLISNCIKCIIHSKKLGKQEGYLNCIDKGDAPLHTLHIDHLGPMDSSAKQYKYILATVDAFSKFVWLFPTKSTGQEEVVKRLTDWSNIFGFPKRIVSDKGTAFTSGAFEQFMSSHNVEHVCTTTGVARGNGQIERVNRLILAIISKLSSDEPSKWYKYVPEVQKAINCHVHSSLKLSPFEVMFGTKMYTRVEDRLLELLQEEVVCQFNEDRYEMRQLVKRNIEQAQKDYKRNYDKKRRAEYKYKAGDLVAIKRTQFVAGRKMASGYLGPYEVTGVKDNGRYDVKKAANVEGPNVTSTSCDNMKLWKYIAENADLLSSGSDDDDQEGRM | |
| FBte0000918 . LTR_retrotransposon 1 7521 . . . ID=FBte0000918;name=Dmel\opus;source=AY180918;type=LTR;subtype=Gypsy | |
| FBte0000918 . five_prime_LTR 1 518 . + 1 Ontology_term=SO:0000425 | |
| FBte0000918 . three_prime_LTR 7004 7521 . + 1 Ontology_term=SO:0000426 | |
| FBte0000918 . CDS 1578 2831 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0025876,SPTREMBL:Q8I7Q0,NCBI_PROTEIN:AAN87270.1;name=Dmel\opus\gag;translation=MEETLRALSESLNALTNVVTGIKEDIKKNNDRLAILEQERGNADPTVDQPQPLVRARTEYELREISVLPDCVKELQAFEGRQEAYLSWINRAQSILTEYDLIKTRPLYRAIVLHIRQKIRGHADMALAAYGVQDDDWDDIKRVLALHYADKRDLRTLEHELGAMCQGSRPLDRFYMDVNGHLSLILNNLKARNHPREVVNALIETYRDKALDVFIRGVGRDCSKHLLVRSPKNLPEAYSFCMGLQNVMSRNFTAQNYQPSGAPRFAGPYQHQARPPFRTPFSPGSGRFSQNSYRTQGPRQAIKMESNRSGQSYQSGYSGRQEEGSGIKRMSEGNNPFQKAQRLYHMELAPPPLAPAASGDNQGRSHEGYYDDESQAVERSNNYPPQKNVEGVTDAPHNLETEGGANFMTNASPVYRT | |
| FBte0000918 . CDS 2972 5983 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0025875,SPTREMBL:Q8I7P9,NCBI_PROTEIN:AAN87271.1;name=Dmel\opus\pol;translation=MITHRLVGKFFKPLGNDSDITFFVLPNLHSFDGIIGDDTLKDLKAIVDRKNNCLIITPGIKIPLLARASINVNPLLAAEHPDGTQEILNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLNQLSTDLDANPEDDMQSLATAHSALHDSSRLIPHVESPINVFKNQLIFDTTRSKYLCEHPFPGYTRHLIPLKDGSLADLTNSLQSCLRPVIINGVKIPEAHLQRFQSICLANFLLYKIRITQRLVADVSGAEEICEIIEKEHRRAHRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNLQPTPIPNYPCEILHIDIFALEKRLYLSCIDKFSKFAKLFHLQSKASVHLRETLVEALHYFTAPKVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYRCLKDELPTFKPVELVHIAVDRYNTSVHSVTNRKPADVFFDRSSRVNYQGLTDFRRQTLEDIKGLIEYKQIRGNMARNKNRDEPKSYGPGDEVFVANKQIKTKEKARFRCEKVQEDNKITVKTRSGKIFHKSDLRN | |
| FBte0000100 . LTR_retrotransposon 1 9092 . . . ID=FBte0000100;name=Dmel\roo;source=AY180917;type=LTR;subtype=Bel-Pao | |
| FBte0000100 . five_prime_LTR 1 429 . + 1 Ontology_term=SO:0000425 | |
| FBte0000100 . three_prime_LTR 8665 9092 . + 1 Ontology_term=SO:0000426 | |
| FBte0000100 . CDS 1275 8357 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0043856,NCBI_PROTEIN:AAN87269.1;name=Dmel\roo\ORF;translation=MMSEKTIQFLKKQSEIILEIRKLEVKPTLTDVEILKLNELQKCFIANHSNLLKIGVVDHEYFNAKQYDLIMMVLEKIKNKNEKIKGESVENTFPKSNTVPKSNPPPTLNLEMRGHPEKEGIAQNNALKVEQAFRNNVGQFRVYLEDTSKLIDSSPDFLKIRKNKIEFLWHKIDNLIEQVNSRFESSLFEEEISELEFDKQNILTAINSRLSGTINKAEMSTVVKAEELPTLPKIQIPTFFGDSKEWDLFNELFTELIHVREDLSPSLKFNYLKSALKGEARNVVTHLLLGSGENYEATWEFLTKRYENKRNIFSDHMNRLMDMPNLNLESNKQIKTFIDTINESIYIIKLKAQLPEDVDAIFAHIILRKFNKESLNLYESHVKKTKEIQALSDVMDFLEQRLNSISSFSQEVKPVKKMINNNKNKNYSDNCAYCKLPGHYLIQCHKFKIMNPAERSDWVRKNGICLRCLRHPFGKKCISEQLCSTCRKPHHTLLHFAGHNPEKVNTCRTTGQALLATALIQVKSRYGGFEQLRALIDSGSQSTIISEESAQILKLKKFRSHTEISGVSSTGTCISKHKAVISIRNSPKNLEIEAIILPKLMKALPVNTINVDQKKWKNFKLADPDFNKPGRIDLIIGADVYTHILQNGVIKIDGLLGQKTDFGWIVSGCKKSKGKETIVATTIEIKELDRYWEVEEEEKDDIESEICENKFIKTTKKDSDGRYIVSIPFKEDVTLGDSKKQAIARYMNLEKKLKRNEKLKVDYTKFMNEYMDLGHMIEVSDEGKYFLPHQAVIRDSSLTTKLRVVFDASAKTTNNKSLNDIMWVGPRVQKDIFDIIIKWRKWEFVVSADIEKMYRQIKIDNNDQKYQYILWRNSPKEKIKTYKLTTVTYGTASAPYLATRVLVDIADKCKNQVISAIIRNDFYMDDLMTGADSVEEANKLITLIPHELQKVGFNLRKWISNNSKILTTVEDTGDNKVLNIIENECVKTLGLKWEPQKDLFKFSVNCNDESKNINKRVVLSTLAKIFDPLGWLAPVTVSGKLFIQKLWINKSEWDQELSIEDKNYWEKYKENLLLLENIRIPRWINSNSSSVIQIHGFADASEKAYAAVVYAKVGPHVNIIASKSRVNPIKNRKTIPKLELCAAHLLSELIQRLKGSIDNIMEIYAWSDSTITLAWINSGQSKIKFIKRRTDDIRKLKNTEWNHVKSEDNPADLASRGVDSNQLINCDFWWKGPKWLADPKELWPRQQSVEEPVLINTVLNDKIDDPIYELIERYSSIEKLIRIIAYINRFVQMKTRNKAYSSIISVKEIRIAETVVIKKQQEYQFRQEIKCLKIKKEIKTNNKILSLNPFLDKGGVLRVGGRLQNSNAEFNVKHPIILEKCHLTSLLIKNAHKETLHGGINLMRNYIQRKYWIFGLKNSLKKYLRECVTCARYKQNTAQQIMGNLPKYRVTMTFPFLNTGIDYAGPYYVKCSKNRGQKTFKGYVAVFVCMATKAIHLEMVSDLTSDAFLAALRRFIARRGKCSNIYSDNGTNFVGAARKLDQELFNAIQENITIAAQLEKDRIDWHFIPPAGPHFGGIWEAGVKSMKYHLKRIIGDTIFTYEEMSTLLCQIEACLNSRPLYTIVSEKDQQEVLTPGHFLIGRPPLEIVEPMEDEKIGNLDRWRLIQKIKKDFWVKWKSEYLHTLQQRNKWKKEIPNIEEGQIVLLKDENCHPARWPLGKVEKVHKGNDDKVRVAKVKMQEGYITRPITKICPLEGIKSVDKNEADQEPKRRTRATSGMSKIGIIMAMLLFVLSCQVSSALPKDIAPRYSIDKINKTSAIYLDPLGDVEIVSTSWNLVIYYKMDPYFKMLTKGNALIQSMRKVCERLHSFEEQCSLVLDNMQSQLSELEENNKLFMMQSRSRSKRAPFEFMGSLYHILFGIMDEDDREQLEENMKNLLDNQNNLDKLIQKQTSVVDSTSNLLKRTTEDVNSNFRSMQIRIENMTEVLKENYYVYKESIKFFMITKQLHSLIEEGEKIQAGIISLLIDINHGRLNTNILRPNQLKKEIAKIQQSLSENLVIPGKRSGTELKEVYTLLTARGLFIDDKLIISAKVPLFSRHPSKLFRLIPVPIRNEDRIIMVHTTSEYLIYNFEIDSYHIMTEATLNQCQKWQLNKRICKGSWPWNSANDNACEIQPLKPDKAANCIYKTVVDSKSYWVELEKKSSWLFKVPANSKVRLQCTGSQIELFDLPQQGVLSIAPYCTARTDDKILVAHHNIQSESEELLSTPYIGEVSGVPKIIWDPLKLSILNHTEEFERLNNEIKFMKENHQKLKDLHFHHISGHAGLIIALILMIVLIIYFIRKCAVQQRMQAITFAGPLPVLXX | |
| FBte0000279 . LTR_retrotransposon 1 7410 . . . ID=FBte0000279;name=Dmel\blood;source=AY180916;type=LTR;subtype=Gypsy | |
| FBte0000279 . five_prime_LTR 1 398 . + 1 Ontology_term=SO:0000425 | |
| FBte0000279 . three_prime_LTR 7011 7410 . + 1 Ontology_term=SO:0000426 | |
| FBte0000279 . CDS 966 1271 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0045863,NCBI_PROTEIN:AAN87266.1;name=Dmel\blood\sORF;translation=MSTKQTFEHPAPVEQRDLPSIKEVIEVDPSAGPKPLTIQEYKARTAAREQPPKKKRGGRRIKLLSARRLNIELLKTATNEEDRQRYKERLAAINQQLRGAK | |
| FBte0000279 . CDS 1863 3116 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0045865,NCBI_PROTEIN:AAN87267.1;name=Dmel\blood\ORF1;translation=MEWLNLTISINNIRDAFDKSYKCINKTALIKTQTLIFHIKVLITQYNTLQNLIVTNKSKLTEEHKVQCFKVLSSFGKRLHNTSVRHSIIIEVPTELTKIAEFDESQLRDLDESQPLEDLDIESDIESIEELKFNTVQPNTRNMANALEAQRAYVKQVSATVPDFDGKKLHLNRFVTALKLTDLTKGDQETLAVEVIKTKIIGPLNYKVEHATTIQAIITILQANVKGESPDVIKAKLINAQQRGKTASQYVTEIDSMRKQLEAAYIDGGLDADNADKFATKESISAMTKNCANEALKMILTAGTFSTFNDAMEKYLHCSTEITGNSNTVLFYNGNNRRGNYNAYYRGRGRNNYNHNYNQNYNQGYNNNNRGRGGYRGHGNNRDGGNRRGNQSQNNNNNRNVRNVQSENSQTPLSDQQ | |
| FBte0000279 . CDS 3749 6733 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0045864,NCBI_PROTEIN:AAN87268.1;name=Dmel\blood\ORF2;translation=MKDYDIFTTPVEKENRTEEILKQLRFPKQFNNELTKLCTEFSDIFGLETEPISANNFYKQKLRLGEKTPVYIKNYRMADSQKPEIARQVKKLIDDGIVEPSMSEYNSPLLLVPKKPLPNSTEKRWRLAVDYRQINKKLLSDKFPLPRIEDILDQLGRAKYFSCLDLMSGFHQIELEKRYRDITSFSTANGSYRFTRLPYGLKVAPNSFQRRMTLAFSGLEPSQAFLYMDDLVVIGCSEKHMLKNLTNVFELCRRHNLKLHPGKCSFFMKEVTYLGHKCTDKGILPDDTKYEVIEKYPIPTDADSARRFVAFCNYYRRFIKNFSDHSRHLTRLCKKNVQFEWTAECNDAFEYLKTELMKPTLLQYPDFGKEFCITTDASKQACGAVLTQDHNGQQLPVAYASRMFTQGESNKSTTEQELTAIHWAINHFRPYIYGKHFMVKSDHRPLSYLFSMKNPSSKLTRMRLDLEEYDFTVEYLKGKDNHIADALSRITIKDLKTINREILKVTTRSKAKQENSCKDEAIVKIQEEKEQTIEKPKVYEVVNNNDTKKYVLIKIDKHKCLLKRGKTIVSRFDVDDLYSNETFDLNQFFQRLISKAGMHKITKMRISPSEQMFQFVSLNEFKIKGNRVLEKVELAILQKVIIIDKNDEAQIKEILTKFHDDPIEGGHTGISRTQSKIKRFYYWPQMTKTISKYVKTCLKCQQAKITTHTKTPLTLMPTPATAFDTVLIDTIGPLPKSEDGNEYAVTIICDLTKFLVTIPTPNKSAKTVAKAIFELFVLKYGPMKTFITDQGTEYKNSLMNELCKYMHIENLTSSAHHHQTLGTIERSHRTFNEYIRSYISVNKSDWDIWLPYFTYCFNTTPSIVHDYCPYELVFGRLPRQFKDFSKINKIDPIYNLDDYSKELKCRLELSYNRARRMLEKAKADRKLRYDRNTNNFELKIGDKVLLRKETGHKLDKRYEGPYDVVDIGINDNITIKTGSKKQQIVHKDRLKKHK | |
| FBte0000217 . LTR_retrotransposon 1 8435 . . . ID=FBte0000217;name=Dmel\ZAM;source=AJ000387;type=LTR;subtype=Gypsy | |
| FBte0000217 . five_prime_LTR 1 473 . + 1 Ontology_term=SO:0000425 | |
| FBte0000217 . three_prime_LTR 7963 8435 . + 1 Ontology_term=SO:0000426 | |
| FBte0000217 . start_codon 494 496 . + 1 Ontology_term=SO:0000318 | |
| FBte0000217 . CDS 494 531 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0024272,SPTREMBL:O46113,NCBI_PROTEIN:CAA04048.1;name=Dmel\ZAM\env;translation=MENTLLNLLLVLLSCHGAYQSIFIHNFNSTNLLAKVPVGKTLVIGNYKKISHIIDLSEYTNCIEKLYHTIDTLRQDETLTDSISILNAKLAQTQSKIDALTPFSRHKRGLINGLGSLVKVVTGNMDANDAKNIETEINHLKSQSTTISDNFEIQNSFNDEVQLRFKNLTRHINNEQNLIKNFFENTQNTIYTKIYNNEEEIKKLQYINRLNYNIDLLVSHLSDIIESTLLAKINVIPKLILDKTEITKIKQIFKTQNYTIKSEQHIYNLLKMNALNYQNKIIFSIKIPIFLSCNYEMARLIPLPINSTQFVIAPKYLIYNNKSNSMFSTMYKCPVIEEQFVCEIDSINNLKNNTCLGHLIQNKTSYCDIKETGLTTDVFEPEKGFILVFNGNNLPIISSNQTITSINGSAIIKYNNCTLKINEINYDNRAVSTEEHPDFFLPPMRKLIKNATINILTLERLHLDTLTTSNKLLVVAAGNSRHSTTLYILFTVSLVAVILTWTLRRDTHIFHTGPDHILPIVAPPIPPSMAFAPNWGGRSYRPIGTIHHPSL | |
| FBte0000217 . CDS 6387 8004 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0024272,SPTREMBL:O46113,NCBI_PROTEIN:CAA04048.1;name=Dmel\ZAM\env;translation=MENTLLNLLLVLLSCHGAYQSIFIHNFNSTNLLAKVPVGKTLVIGNYKKISHIIDLSEYTNCIEKLYHTIDTLRQDETLTDSISILNAKLAQTQSKIDALTPFSRHKRGLINGLGSLVKVVTGNMDANDAKNIETEINHLKSQSTTISDNFEIQNSFNDEVQLRFKNLTRHINNEQNLIKNFFENTQNTIYTKIYNNEEEIKKLQYINRLNYNIDLLVSHLSDIIESTLLAKINVIPKLILDKTEITKIKQIFKTQNYTIKSEQHIYNLLKMNALNYQNKIIFSIKIPIFLSCNYEMARLIPLPINSTQFVIAPKYLIYNNKSNSMFSTMYKCPVIEEQFVCEIDSINNLKNNTCLGHLIQNKTSYCDIKETGLTTDVFEPEKGFILVFNGNNLPIISSNQTITSINGSAIIKYNNCTLKINEINYDNRAVSTEEHPDFFLPPMRKLIKNATINILTLERLHLDTLTTSNKLLVVAAGNSRHSTTLYILFTVSLVAVILTWTLRRDTHIFHTGPDHILPIVAPPIPPSMAFAPNWGGRSYRPIGTIHHPSL | |
| FBte0000217 . start_codon 1789 1791 . + 1 Ontology_term=SO:0000318 | |
| FBte0000217 . CDS 1789 2820 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0024271,SPTREMBL:O46114,NCBI_PROTEIN:CAA04049.1;name=Dmel\ZAM\gag;translation=MSKKLTQTIKQTTRSVLESHTFPKRVTRSVSKTNTLPVIRESTPLPPLQPINMDSGNASVGNSAPVTPTVSGFSSIATALSATDILAFVKELPTFDGTPGQLDKYITSVEEIIMLIRGTDQTPYGLLTLRAIRNKIVGRADEALNLANTKLIWDDIKSNLLRLYSSKKSEATLLGELQSLPDNLTLGQLFFGLSRIRSQLISITSNSGQSATIIEAKKTLYDEVCLNAFISRIREPLKTVIRLKDPKTIETAYELCQGERARYQNRNPYPPTQNNTERRTNNYNNNNNNNHRDNNNRNNVTRLTPKTTQTITQTPIPNIVNQTTATELVTRLKIIKQIMGYTT | |
| FBte0000217 . CDS 2795 6448 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0024270,SPTREMBL:O46115,NCBI_PROTEIN:CAA04050.1;name=Dmel\ZAM\pol;translation=NKLWATQHRRRKTHPTLPYQLKFSGTRLRNPTGYINPTTHATSLPYITLNLQQKFPLSFLIDTGSNNSFIDPESANQLECTILPTSTSITTALNSFKIEEKAIFPMPPEFKTEGQITLLKFKFHSYFNGLIGMDLLSHLEAKVDLVNLQLVTSKSTLPIFLYTNQASKIFNIPAYSKVILPLPVKTNHGEFYCCTTQLNNELSLSEGLYKSNNNIANVEISNQSDSDKLLYLEYPLETIPYNKNDHIELFNISATPLNNDTPQAPLHILTEHLNPEEKTALTTLCKQFRDIFYNPETPLTFTNKITHSIPTIDNTPIHTKSYRYPFVHKTEVKKQIESMLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIPNINDILDSIGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLKNAPATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLRAANFKLQPSKSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRKFIRDFARITKPMTKQLKGKRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPFILTTDASNFALGAVLSQGSLQNDRPVCFASRTLSDTEVNYSTIEKEMLAIIWAVKYFRPYIYGVKFTIVTDHKPLIWLMNFKEPNSKIIRWRLQLMEYNFEIIHKKGSQNVIADALSRADPNLNYNETLTVKPCPTSEKPINEFNTQLILEIDTNTSYQTTTPFKQKIRKKYSQPCFDFDNIVKILKGTLKPNRICAFLADDNNSALIEKAFSTYFAHKKHFKIIRCKSLLHEIVGNPEQNKFIQEYHTNSNHRGIDETFLHLKRETYFPNMKNKISELIRNCETCLKLKYDRQPQNIVFETPETPSKPLDIIHIDIYTINNNFNLTIIDKFSKFAAVYPIPNRNGINCIKAIKNFFSQFGLPKKLIHDQGVEFCNDIFRKFCSQYNILLHVTSFQQSSSNSPVERLHSSLTEIYRIILDTRKKHKLPTDHEEIMSETVITYNNAIHSTTKHTPFELFNGRTHLFEKTIIPNNEHDYLNKLNTFQDKLYSEIKEKLSTNTQQRIEKLNTSRVEPTTVQPNSTIFRKENRRNKLTPRFSLHRTAKDKGKTLVTTRNQKIHKSKIRKISKPPNDLSLSTCIPDLAMGHTNLSSSTTSIAPTS | |
| FBte0000359 . LTR_retrotransposon 1 8507 . . . ID=FBte0000359;name=Dmel\GATE;source=AJ010298;type=LTR;subtype=Bel-Pao | |
| FBte0000359 . five_prime_LTR 1 272 . + 1 Ontology_term=SO:0000425 | |
| FBte0000359 . three_prime_LTR 8236 8507 . + 1 Ontology_term=SO:0000426 | |
| FBte0000359 . polyA_signal_sequence 158 163 . + 1 Ontology_term=SO:0000551 | |
| FBte0000359 . polyA_signal_sequence 8383 8398 . + 1 Ontology_term=SO:0000551 | |
| FBte0000359 . primer_binding_site 276 293 . + 1 Ontology_term=SO:0005850 | |
| FBte0000359 . RR_tract 8236 8507 . + 1 Ontology_term=SO:0000435 | |
| FBte0000359 . CDS 1741 6456 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044067,SPTREMBL:O76925,NCBI_PROTEIN:CAA09069.1;name=Dmel\GATE\polyprotein;translation=MPIGDDKKKLSADKPRSIFSPQGPKSPRIPSISVKTPAQISDDCATPSKATVQRTAKNMAASDLALAKFISVSDAQANLRLRSTLRNPQLQPSRCLASVATKSEAYGTRLKRIRPLLRVPCVSRRAAASGMPILRASYSYCYSVYERCVAQLVDKIEQGHFSVHPKRTLRPRPTFPLAVGCLHAIQEFSQVTIFAGRFPDLLHAIYINNPRLTPFEKLFHLNAKTSGDAHAIVSISPLTKRGFSSAWENLIERFENKRLLVNSQLKILFNVQSIPQESGAALKVMQSTVQGCLTALELSGINTENWDCLLEYLCSSKLPKITLSLWEQSLHKKADIPTWGELNTFLTERHRTLEAIDDVRPSVPSQSHSKAMNSSGPSRDGKLASDLCNKENHPVRVCRVFSKWSVDDRSAYIKRKQLCLNYFAKGHQLRECKDRQSFTWWPASHVVAPKQPLFQQFKPFKSCKPNFRYSGQFRSKRASRCSKLFCHGSRAILLGSAIINSSHLGTNFKARALIDSGSEATFITEPLFNLIRLPFQVVQAQVSGLNQTVAAQFKNAAVSPSDLRLGRVAVGDDGLCPPSTSRKSAFLPNSAKFLRDLPDFPLADPKFYESAPIDVLIRSPHPASVLLSGAKTNICGSLLGQETIFRWVLTGPVSASAQSRIPLFRHRSPTRTIIHWTNSSQNLGRWRIYQQSCKRIRFHVRERVGKCLRRHQCGKYVVTLPFRDPEHIGCGLGHSRSWALAQFLKNEQRLKKDEALKARYDSVIQEYLDLKHMRQVLPTHDCNAYYMPHHAVLKPESVTTKLRVVFNASSPSSNGTSLNDILHAGPVLQSDLTVQILKWRDFRYVFSADIQKMYRQIWVDPKHTPFQRILFRNNRGEIRDFELKTVTFGVNCAPLLAIRVLQQLAADEELSHPKASNVIRNFMYVDDVLAGADSTEEAQLMVHELRDALNSSSSRQRWLSKRPLQRQVLSQIAKLFDPAGWLAPFIVRAKIFMQEIWLQELGWDENVPNDLFQRWLNFLQSYSVFEQIRIPRWLSFHPDFKVEHHGFCDASQKAYGAAIYVRGEVGSAIMVQLLTAKTRVAPVKTVSLPRLELCGALLLSEMAAAIIPQMPTINSKLYCWTDSTIVLAWLSKPACQWTTFVANRETKIAQATKTENWSHVQSEHNPADLASRGVSLQDLADSQLWWHGPTWLQNPRNQWPTQVNAPVTDLEKRALKVHLAKAPSEELLARFSKLEKALRVLAYVYRFIQRCRKQTSPSDVHLLATEIAAAERFLISNTQRREFPVEYHCLSEKRPVPSSSAILSMNPFLDPQGLIRACGRVAASESPQYNERHPVILPYNCLLSRLLAKFTHRTTLHGGNQLMVRLIRSKYWIPRIKNLMKAVVNSCKVCVIHKRRLQSQLMGVLPKERASFSRPFTVSAWITPVRDIKNYTGRACVITKGYVLVFVCFSTKAIHLEPTSDLTTEKFLAAFSRFVSRRGCPRQVQSDNGKTFVGAATLLSRDFLQAVKESVTNAYIHQEMQWQLFSGGTQYGRPLGSRRKKLQDAILQMHGHTKIHVRRTLHALGKNRSVP | |
| FBte0001160 . non_LTR_retrotransposon 1 4740 . . . ID=FBte0001160;name=Dmel\X-element;source=AF237761;type=LINE;subtype=Jockey | |
| FBte0001160 . start_codon 322 324 . + 1 Ontology_term=SO:0000318 | |
| FBte0001160 . CDS 322 1827 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0041613,SPTREMBL:Q9NBX5,NCBI_PROTEIN:AAF81410.1;name=Dmel\X-element\ORF1;translation=MNTLNETAAADESLDTAFLSSPQCAAPQRFQKIKRKSRASPETERKKPKSTIGKQGENPSATEPRYGGNSNRFGLLAHLTADKQVGNEIGDLYDQPSTSHQAAIAAAKRDAASAGTTSSAKRAQSKPPPIVMEGVDDVYLMMQSIENIVDLEKIEARASMSGVLRLYAADANTFRTIVNWLEIEEYEFHCYQLKEDRPYRVCVKGLHHSTLHHQIKDELEKIGHKVLDIHTPLRRNEPGTSKASPVNMFFLNIAAAANNKEILAVKALCHMRVVIEPLRKRNAIVQCHRCQQIGHTAKYCRKAHICVKCAGEHPAKDCTRPRIELCTCYNCGGQHPANYKGCSKLQAFLQRSRPRSGVAGRTEVSDRPTPRGLAGGKEIPSSRGGISYADVARGSIHHKQPMSLTHQQQKQKQQPYDGSPSRQRSRSRTRASRGTLQRSTDASSSIEAILQTLNENINSLRSIQEKQMELMMMMMKQQQQQSHQQGQIINLLTALQARQAP | |
| FBte0001160 . start_codon 1827 1829 . + 1 Ontology_term=SO:0000318 | |
| FBte0001160 . CDS 1827 4553 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0041612,SPTREMBL:Q9NBX4,NCBI_PROTEIN:AAF81411.1;name=Dmel\X-element\ORF2;translation=MMPLRILVWNADGVSTKLPEVECFVRRHEIDVLLLSETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFALTKGVLGIHANISAVVELSSDHLPLVITLDAGAISYPKMERLITRRTNLEVFQSQLESTLPLNTAINSGQDVDDAIELLTNNIKSAARLATRSISRQPAADRIPIPREILLLIAEKRRLRTRWMRSRHPSDKTEWNRALSRLRCALVLHKAAWFDERLANTGVESEATHSLWKATRAIKRRCTRKAPLVDSNGTWCRTDLGQAEVFAAHLAERFQPFKLASLQQVEETQDQLNQALQMDMPITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIGLQLKIKQTLPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCFTLKRRTPPPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASALNRSRPPRRLNRRQPRDLITRSPLTRVRRS | |
| FBte0001377 . LTR_retrotransposon 1 5249 . . . ID=FBte0001377;name=Dmel\Transpac;source=AF222049;type=LTR;subtype=Gypsy | |
| FBte0001377 . five_prime_LTR 1 330 . + 1 Ontology_term=SO:0000425 | |
| FBte0001377 . three_prime_LTR 4920 5249 . + 1 Ontology_term=SO:0000426 | |
| FBte0001377 . start_codon 668 670 . + 1 Ontology_term=SO:0000318 | |
| FBte0001377 . CDS 668 1603 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0040266,SPTREMBL:Q9NHF8,NCBI_PROTEIN:AAF36670.1;name=Dmel\Transpac\gag;translation=MNENSLAAFNSTMNCIKLIQNFDGTDTNQLPDLITQIENILPSFDVFDTNTKNILFGFIKNKFVGLCRPVIHRHGNMTEWESFKRVILKNFGEKETSDVLMDMLKLCRVESTIEEYYNKINEISNRVHNRILIHDDKTYTTLEVNRIALRVFRDNLPEPTKTLIFARNPNSVEDAYKIIEDARHQSYTLYGPIRRNNRYNKPNFRTNFSNDNRNVNEPVVTERSLDEANRFQQNNVEQQENSRTEGTPRVNNRRQGYQYQSNNSSTSNSARVSTNSRNVQSSEQSRRSFEPMDINQSSVNFQIEDQDEYHI | |
| FBte0001377 . start_codon 1726 1728 . + 1 Ontology_term=SO:0000318 | |
| FBte0001377 . CDS 1726 4839 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0040265,SPTREMBL:Q9NHF7,NCBI_PROTEIN:AAF36671.1;name=Dmel\Transpac\pol;translation=MGNKIKIRKLCRFPCFQEFEAEGYICEFLEYNFHNYFDGLIGCNILNDLHAVIDYSNKKIQLNNVYLDLLVQENHLDLGIHNLIPMNLICPQARSSINELIQKFEHIFYKEGQDLSFTSEIKHRIITKNDLPIYSKTYKYPEIHKDEVNRQIAEMLDQGIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNIDEIFDKLGDCKIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMNNILSPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDKCEFAREEIEFLGHTINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYSKIAQPLIKYLKKNSKINTHDQXYVEAFQKLKILITSDPIVVYPDFNKQFTIVTDASNYALGAVLMQDNKVISYASRSLKNHELNYSTIEKELLAIYWSTKFFKYYIYGRKFIIKTDHRPLVWLNNLKEPNLKLQRWKVQLNEFDFDITFIKGKENALADGLSRIVKASTEEYDKNAQTNIEINNLDIFMLENTNTLPEVTPKTKIINEDFSKDLIHIFANDIDDLETIHSADSDDLNFISITTNCLNVFKIQIQIIEAESDLSTFKILHNKKIRHIFKSSGNQENMLKFMQEKLPEKGLVVIFCENLSLFVKFQEIYRQYFSSNKNLRILKSGTLLEDINDKEKLLKIIENEHIKNNHRGINEIFISIREKYYYPKMQKFIQNYINNCKICNLAKYDRQPIKYNFNITETPDKINDIIHIDIWYPKRNIMYVTSIDKMSKYATAQHIKDRSWISLLNAIKLRIQYLGKPKKIVTDNEFDIVVIKQFLLENNIDIHFTTPYKKTGNSDVERLHLTLNEHMRLYNADPNNFDTIQENVYKAIVCYNNTIHSTTNIRPIDLFNNILCHEDISKLSEKLVRNKQTLNAKQDNINESNFSNIFVKNNQVGKSNPKYKEISNYTQYGNYLINNKDNKRKIYKDQVKRKYKYQNEDCET | |
| FBte0000616 . LTR_retrotransposon 1 7450 . . . ID=FBte0000616;name=Dmel\Circe;source=?;type=LTR;subtype=Gypsy | |
| FBte0000616 . five_prime_LTR 1 240 . + 1 Ontology_term=SO:0000425 | |
| FBte0000616 . three_prime_LTR 7211 7450 . + 1 Ontology_term=SO:0000426 | |
| FBte0000457 . non_LTR_retrotransposon 1 5149 . . . ID=FBte0000457;name=Dmel\Rt1a;source=AJ278684;type=LINE;subtype=R1 | |
| FBte0000457 . five_prime_UTR 1 436 . + 1 Ontology_term=SO:0000204 | |
| FBte0000457 . three_prime_UTR 4854 5149 . + 1 Ontology_term=SO:0000205 | |
| FBte0000457 . CDS 437 1903 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0041727,SPTREMBL:Q9N9Z2,NCBI_PROTEIN:CAB99191.1;name=Dmel\Rt1a\gag;translation=MDRTGGGSAPDPNDPFRRSGRLSRSPIRGVGTQIQGGGGEQAGPPPPKASDCSAAVEVETLATTVSTTATSLKTMDFISVPAQRAGAKSPSGSPHRSPELTTTLQNEDLQGILDMMKAKITAILSSFETRRHVTSEDRGVLVDLSALNKRAIELQEGINKKPPPRSTATQTEAEKTKRSQVAPPRQALPNVQVRKTDNHRSAAKSTGKALPTTADSKPESYASVAKDANKDEEWAKVKPKRLRKKPEALILKKTGEVTYSDMLRKMKAEPSLTEFGKHVRKIRRTQQGELLLELEGKASEVIPSFKNELEATLKEIASVRTGAHRTALICSGLDETTTAQDLHNSLVSQFQGIRLEPEDVRGLRRRRDGTQIASVLMCANDAIAVINRGVVTVGWSRCRIAQDVRPIRCFRCLEFGHRAPYCKSVDRSDCCLRCGEHGHKAKGCVAPPRCLICSSDVDKNHATGGFACPTYKANTKGANSRQNDARRN | |
| FBte0000457 . CDS 1884 4853 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0041726,SPTREMBL:Q9N9Z1,NCBI_PROTEIN:CAB99192.1;name=Dmel\Rt1a\pol;translation=MMPEEINIIQLNVNHCAAAQNLLTQTAKERHADVVLLSEPYLPGVGNSGVLLDETGKAAIKCTSRLLVEEWDTVPMRGIAYAKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNNDRGTSFIDVTFVSRVLVAGSNWMVHEDITLSDHNLITFGARTMRPSPKQRRCALGPVWDIRKLDEDMLAYQIEGMESIIGHAETMVTALMDRLRAMCDAVMPRKRNTKRKPPVYWWSDSLHQLRTECIKARRQAQRSRGQPHHSQCIEVYKAKRTELKNGISAAKANAFKDLIDSVDDDPWGLAYKVVRKKLNSAGAGSPQDPAALANIVSELFPSQHTLWQPAVDPPASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGVFPKRWKKMKLVLLLKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRSHQVSAGVPQGSVLGPILWNIMYDGILSISKPRGVELHCFADDVAITAVAKTIPELQDISNVAITAAIEWLEKVGLKIAAHKTEVVLLSSRKSVECMRVEVKGVEIASAETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMPNVGGPRLPARRLLVAVSKATLLYAAPIWSCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYTQLEIKEWIRGVWQTRWQESQRGRWTYKLIPQLTEWADCEHKTVDYHMTQFLTDHGCFRGYLCRFRHVDTAQCLYCTDAVETAEHILLHCSRFAEERAQLVALAGSPLSPRGLVAAMMADKIVWDGAHVIIVTMMKRVRKDEMANRNYR | |
| FBte0000603 . non_LTR_retrotransposon 1 5171 . . . ID=FBte0000603;name=Dmel\Rt1b;source=AC005734;type=LINE;subtype=R1 | |
| FBte0000603 . CDS 383 1879 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0042680;name=Dmel\Rt1b\gag | |
| FBte0000603 . CDS 1863 4826 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0042681;name=Dmel\Rt1b\RTase | |
| FBte0000640 . LTR_retrotransposon 1 7387 . . . ID=FBte0000640;name=Dmel\Quasimodo;source=AF364550;type=LTR;subtype=Gypsy | |
| FBte0000640 . five_prime_LTR 1 658 . + 1 Ontology_term=SO:0000425 | |
| FBte0000640 . three_prime_LTR 6729 7387 . + 1 Ontology_term=SO:0000426 | |
| FBte0000640 . start_codon 1074 1076 . + 1 Ontology_term=SO:0000318 | |
| FBte0000640 . CDS 1074 2081 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044353,SPTREMBL:Q967T3,NCBI_PROTEIN:AAK52060.1;name=Dmel\Quasimodo\gag;translation=MAQPSEQIMILSELHLNQALGQIRHISTFDGSTRELASFVRRVDFVMSLYPTTDKRQHSVLYSAIERQLSQHAQEVSQLQQCNTWAELRSVLIDEFKTQIPYEELLRRLYNTYWSGSIRKFVEELENKMFEISSKLSLENNYTNTTLYTAAMANTIKDVIYKRIPDRMFMTLARYDITTTTLLRQVAQREGLYDTIVLNTEKAKAKLNSPSTLQSSSKNNGSQKNKGNNNDQGIKPYYIQAQQSQNRNNYASNNSKKVESNQATYNEFKQKLEQGRAQNALNFQKPTSYSTTNQPQKRQRESSSGQSKMDTSENFHQLASGSESEVEEEHTHSYK | |
| FBte0000640 . start_codon 2084 2086 . + 1 Ontology_term=SO:0000318 | |
| FBte0000640 . CDS 2084 5281 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044352,SPTREMBL:Q967T2,NCBI_PROTEIN:AAK52058.1;name=Dmel\Quasimodo\pol;translation=MNNIKLKCLIDTGSSINLMSKNFFNCPINSKAPLDVHTINGQIILKSKITLKPSKLCPTKQTFYLHKFSEKYDILLGREYLEDSKATICYTSNTVTLNKYTFKLRLEDINEEEETPKESLKENLLDSPNIEYVNYVIDNELNETNEFRLDHLNDEERKALTSVLYEFSDIQYKEGENLTFTSTTKHVITTKHEDPIYRRPYKYPQSFDEEVENQMKDMIRQGIIRKSNSPYCSPVWVVPKKPDASGKSKFRIVIDYRNLNEITVDDKYPIPVMDEILDKLGNCQYFTTIDLAKGFHQIQMDENSIAKTAFSTKNGHFEYTRMPFGLKNAPATFQRCMNNLLADLIYKNCLVYLDDIIVYSTSLEEHIMSLRKVFLKLREANLKLQLDKCEFLKKETEFLGHIITTDGIKPNPAKIKAVVNFPIPKSTKEIKSFLGLCGFYRKFIPNFAKIAKPMTLRLKKGSIINIKDSDYYLAFEKLKVLITSDPILIHPDFKKSFSLTTDASNFAIGAVLSQEHKPICYASRTLNEHEVNYSAIEKELLAIVWATKYFRSYLFGRKFEIHSDHRPLVWLDSIKEPNMKLQRWKIKLNEFDYHIKYLPGKENHVADALSRVKIEENFLGETSSNISLPTQATIHSAQEDNQSYISLTERPINYYNRQIEFIKDDNNNVETKRYFHKTKIKIHYIEMTNVHAKELIKEYLCTKRSVIFFHNEIDFLTFQNAYIEIVSPNNVTKVMKSNIKLKDIETYSEFKEIIIKSHRELLHPGIEKQTNLFKEKYYYPDYQKLIQNIINECEVCNISKTEHRDTKLRYELTPETFNPREKYVIDFYLINNKTFLSCIDIYSKYAALIEVSSRDWLEAKRALLKIFNEMGKPSEIKADKDSAFICSALHLWLRSENVNINITTSKNGISDIERFHKTVNEKLRIINSESDPENKITQFETILYVYNHKTKHNTTGRTPADIFLYAGTPAYDTQKEKQSKIDKLNKDRHSYEVDTRYKQAPLVKSKTTNPFKKTGHVEQIDEKHYEETNRGRKVEHYKSKFKKQKRINKSKYNSSSTPENQVGSD | |
| FBte0000640 . start_codon 5145 5147 . + 1 Ontology_term=SO:0000318 | |
| FBte0000640 . CDS 5145 6701 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044354,SPTREMBL:Q967T1,NCBI_PROTEIN:AAK52059.1;name=Dmel\Quasimodo\env;translation=MRNITKKQIEEEKLNIINLNLKNKRELIKVNTIPAQLPKIKWGPIKQLFIITLIICFIRAVRGQSLEVNPIQAKNGYLIFKTGSINIPINYEYHYLSVNLTKTEQTFANLIKQAEEYGTIAQIQYLTEKLDREMNGIRIIKRNKRGLINIIGTAYKYLFGTLDQNDKEELEQKIYDLSQHSIQINELNEVIEVVNRGIEVINHLSAISEGDRRLELLVFNLQQFTEYIEDIELGMQLTRLGIFNPKLLRHDPLSHVNSEKLLNIKTSTWLKSDANEILIISHIPRDIIKTALFNIVPYPDKDNNILIENVNDKYYIQDNQVYKQNSGKPIINKCITGILNQIPTECRYSKTHNNIGITYVEPNIILTWKLSKIVLNQNCIINREIIIEGDNIIKAFNCSVQIENILITSTTLDYTQTVYINNNVTKLEPLSYLNAKEIIKEHTNTYNTLQIITLTILAIIILTLILYFIYKYKGIPKKLIVKYKKENPKQIEQQNNTTTENINTVLDTNPVLYPRISA | |
| FBte0000726 . LTR_retrotransposon 1 7062 . . . ID=FBte0000726;name=Dmel\HMS-Beagle;source=AF365402;type=LTR;subtype=Gypsy | |
| FBte0000726 . five_prime_LTR 1 266 . + 1 Ontology_term=SO:0000425 | |
| FBte0000726 . three_prime_LTR 6796 7062 . + 1 Ontology_term=SO:0000426 | |
| FBte0000726 . CDS 1527 2930 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044442,SPTREMBL:Q967S7,NCBI_PROTEIN:AAK53387.1;name=Dmel\HMS-Beagle\gag;translation=MANPNNIIRPSAFSSNERPVPSERHDLPEQHRVDMSVEQLTALIGQTVAQVLPGLIKQMNNNTLDFTDVSDQVVEPEYRNNLADFDRVPDIVKSIREFSGNPAEFGSWKKSVDRIMETYTPFVGTPKYYGILHTIRNKIVGSADVALESYSIPLDWKAMSRCLTLHYADKRDITTLEYQMSTLVQGHQQSVEDFHQDVYKNLSLILNKVGCMQMSRESEHFVTKMYREKALDTFIRGLRGDLPRLLAIKEPADLPSALHYCLKLENQTFRSNHAANKGQQSSFRGNEKPIPAPRNFQPSNAFGHRQPPPVPPRHPMRRPPQYLGQPFPAPRQHVSNFGNAPFIPPRQNYQQQWQQYNAPPRPFATKPQPRPEPMDVDGSVQTRNINYMNRPHSDINKRQKNYNIQTVNMRQPSIEVTGSSSSMTGYQRSMQDYETQNNINSTLNEYCDGQIDNLDSEQRDHVLHFLE | |
| FBte0000726 . CDS 2870 6049 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044441,SPTREMBL:Q967S6,NCBI_PROTEIN:AAK53386.1;name=Dmel\HMS-Beagle\pol;translation=WTNRQFGQRTTRPRVAFFRVEDSSLPYFECRVGSGKVLRVLIDTGSNKNYIQPNLVTNAIPNNKPYIADTPGGDVKISHYKRASLFDFEIKFFLLPTLKTFDAILGKDTMKGMGAQIDLKNLTMTLENGKRVVLKEKQFEAVSTISPRIKHLEVEQRMILNKIIDSYPGLFADPNQKLTYTTSVRAAIRTISDTPIYSKFYQYPMSLKDEVHKQISELLHDGIIRPSRSPYNSPVWIVPKKLDSSGKKKYRVVIDYRKLNMVTVADRYPIPDINEVLAQLGDNKIFSVLDLKSGFHQILLKESDIEKTAFSINNGKYEFTRLPFGLKNAPSIFQRALDDILHEHIGKICFIYIDDIIIFSKDDETHYQNLDTIFRTLQQANMKCQLDKCEFMKRKVEFLGFVVSDKGIETSPTKVQAISDFPIPRTLKELRSFLGLSGYYRRFIPNYAKLAKPLSSLLRGEDGRISRTLSSKKSVSLNREAIEAFKKLKSSLVSPDVILHYPDFKKEFHLTTDASNFAVGAVLSQENRPISFLSRTLSKAEENYATNEKEMLAIIWALKKLKIYLYGKAKVKIFTDHQPLTHSLSSWNGNARIKRWKAYLEEYDYEIFYKPGRENTVADALSRGPTVEQINTVASTMHSSDSSSHGLIPSVEAPINAFKNQIFFRESESENYSFSIPFPTFQRHLVDRNLFTPDSLLSDLKEYLNPSVINGIFTSEDVMGKIQILYPIHFQGFKIRFCQSKVKDLVNEAEQEEEILRTHNRAHRNAVENKAQLSERVYFPKMRKKVSAIVNQCLVCKTAKYDRHPTHPEIRQTPLPEYPGQIIHIDIYSTERHLVLTAIDKFSKLAMGRVIKSKAVEDIRKALRDIVFYYGVPKLIVMDNEKSLNSASIKFMLTDQLGIELYKAPPYKSTVNGQIERFHSTLSEIMRCLKGDGTHRGFEELLDRAIYEYNYTVHSVTKKRPLEVFFGRIATVAPEKYEQARLDNIDRLRQKQETDIEYHNRTRKPIKTYIKGQEIFVRVNTRLGSKLSSRFRKELVKEDRSTTILTESGKLVHKSNIRS | |
| FBte0000001 . LTR_retrotransposon 1 6112 . . . ID=FBte0000001;name=Dmel\diver;source=AC004377;type=LTR;subtype=Bel-Pao | |
| FBte0000001 . five_prime_LTR 1 224 . + 1 Ontology_term=SO:0000425 | |
| FBte0000001 . three_prime_LTR 5889 6112 . + 1 Ontology_term=SO:0000426 | |
| FBte0000001 . CDS 577 5820 . + 1 Ontology_term=SO:0000316 | |
| FBte0000974 . LTR_retrotransposon 1 7345 . . . ID=FBte0000974;name=Dmel\Tabor;source=AC007146;type=LTR;subtype=Gypsy | |
| FBte0000974 . five_prime_LTR 1 506 . + 1 Ontology_term=SO:0000425 | |
| FBte0000974 . three_prime_LTR 6840 7345 . + 1 Ontology_term=SO:0000426 | |
| FBte0000974 . CDS 1229 1456 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0045967;name=Dmel\Tabor\sORF;translation=MGWFGSDDSQTKDNTANVVNNVKIVDHTEDIQALWVLLLILTITSVAQFLLTLYIKHNKILKRRYMSRANNLDRV | |
| FBte0000974 . CDS 1531 2851 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0045969;name=Dmel\Tabor\gag;translation=MRTGNYIVPHNFHVVDDNFPIPGDGIVGIDFIKTFNCQLDFTTESDFFILRPNNIKQAIQIPIFHNIDNTEITIPSRCEVIRQITVSSVDNQILIPNQEIEDGVFVGNSISDSKNTYIRILNTTNSNKILNVNKINFEPLTSYKIADLNDSIRAESILSRLKKNFPSAHKKMLTELCSQYTDIFGLETEPITTNKFYKQKIRLRDDEPSYIKNYRTPHSQQAEISRQVTKLIEDKIVEPAVSEYNSPLLLVPKKSLPDSKEKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELEEDSRNITSFSTSSGSYRFTRLPYGLKIAPNSFQRMMTMAFTGLEPSQAFLYMDDLIVIGCSEKHMTKNLTNVFELCRKNNLKLHPDKCSFFMSEVTFLGHKCTDKGILPDDTKYDAIQRYPVPTDADSARRFVAFCNYYRRFIQNFADYSRHITRLCKKNVKFEWTADCQHAFEHLKKQLMNPTLLKYPDFSKEFCIITDASKEACGAVLTQNYNGIHLPVAYASRSFTKGESNKSTTEQELSAIHWAINHFKPYIYGRHFTVKTDHRPLTYLFSMVNPSSKLTRMRLDLEEYEFTVEYLKGKDNYVADALSRITIDQLKNISKQVLKVTTRNQSRQESCAGKGNKNDKVELPKQTTQEASKPKVYGVINNDEVRKVVTLHVNNMICFFKHEKKITARYNVEDLYINGTLDLGQFFHRLEKQAGMHNINQLKMAPWENIFDNISIDTFKKMGNKTLKLLRVALLNPVTLVNTKKEKEAILSTHHDDPTQGGHAGITKTLARIKRHYFWKGMTREITEYIRKCPKCQKAKIMKHTKTPLSITETPISAFDRVIVDTIGPLPKSENGNEYAVTLICDLTKYLVTIPIANKSANTVAKAIFESFVLKFGPMKTFISDMGTEYRNSIIKDLCKYLKVENITSSAHHHQTVGTVERSHRTFNEYIRSYISVDKTDWDVWIKYFEFCFNTTPSMAHNYCPYELIFGKTCNLPKHFNSTDRIEPIYNIEDYPKESKYRLEVAYNRARIMLEEQKKKNKELYDLKLNDISISIGDKVLLKNETGHKLDFKYTGPYTVVKIEERDNIVISNDKKKPQTVHKDRLKLFSS | |
| FBte0000974 . CDS 2787 6479 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0045968;name=Dmel\Tabor\pol;translation=MRTGNYIVPHNFHVVDDNFPIPGDGIVGIDFIKTFNCQLDFTTESDFFILRPNNIKQAIQIPIFHNIDNTEITIPSRCEVIRQITVSSVDNQILIPNQEIEDGVFVGNSISDSKNTYIRILNTTNSNKILNVNKINFEPLTSYKIADLNDSIRAESILSRLKKNFPSAHKKMLTELCSQYTDIFGLETEPITTNKFYKQKIRLRDDEPSYIKNYRTPHSQQAEISRQVTKLIEDKIVEPAVSEYNSPLLLVPKKSLPDSKEKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELEEDSRNITSFSTSSGSYRFTRLPYGLKIAPNSFQRMMTMAFTGLEPSQAFLYMDDLIVIGCSEKHMTKNLTNVFELCRKNNLKLHPDKCSFFMSEVTFLGHKCTDKGILPDDTKYDAIQRYPVPTDADSARRFVAFCNYYRRFIQNFADYSRHITRLCKKNVKFEWTADCQHAFEHLKKQLMNPTLLKYPDFSKEFCIITDASKEACGAVLTQNYNGIHLPVAYASRSFTKGESNKSTTEQELSAIHWAINHFKPYIYGRHFTVKTDHRPLTYLFSMVNPSSKLTRMRLDLEEYEFTVEYLKGKDNYVADALSRITIDQLKNISKQVLKVTTRNQSRQESCAGKGNKNDKVELPKQTTQEASKPKVYGVINNDEVRKVVTLHVNNMICFFKHEKKITARYNVEDLYINGTLDLGQFFHRLEKQAGMHNINQLKMAPWENIFDNISIDTFKKMGNKTLKLLRVALLNPVTLVNTKKEKEAILSTHHDDPTQGGHAGITKTLARIKRHYFWKGMTREITEYIRKCPKCQKAKIMKHTKTPLSITETPISAFDRVIVDTIGPLPKSENGNEYAVTLICDLTKYLVTIPIANKSANTVAKAIFESFVLKFGPMKTFISDMGTEYRNSIIKDLCKYLKVENITSSAHHHQTVGTVERSHRTFNEYIRSYISVDKTDWDVWIKYFEFCFNTTPSMAHNYCPYELIFGKTCNLPKHFNSTDRIEPIYNIEDYPKESKYRLEVAYNRARIMLEEQKKKNKELYDLKLNDISISIGDKVLLKNETGHKLDFKYTGPYTVVKIEERDNIVISNDKKKPQTVHKDRLKLFSS | |
| FBte0001066 . LTR_retrotransposon 1 7256 . . . ID=FBte0001066;name=Dmel\Stalker;source=AF420242;type=LTR;subtype=Gypsy | |
| FBte0001066 . five_prime_LTR 1 406 . + 1 Ontology_term=SO:0000425 | |
| FBte0001066 . three_prime_LTR 6849 7256 . + 1 Ontology_term=SO:0000426 | |
| FBte0000312 . terminal_inverted_repeat_element 1 611 . . . ID=FBte0000312;name=Dmel\INE-1;source=U66884;type=DNA;subtype=Helitron | |
| FBte0001062 . LTR_retrotransposon 1 7411 . . . ID=FBte0001062;name=Dmel\gtwin;source=AC006215;type=LTR;subtype=Gypsy | |
| FBte0001062 . five_prime_LTR 1 494 . + 1 Ontology_term=SO:0000425 | |
| FBte0001062 . three_prime_LTR 6917 7410 . + 1 Ontology_term=SO:0000426 | |
| FBte0001062 . CDS 981 2357 . + 1 Ontology_term=SO:0000316 | |
| FBte0001062 . CDS 2729 5392 . + 1 Ontology_term=SO:0000316 | |
| FBte0001040 . LTR_retrotransposon 1 6841 . . . ID=FBte0001040;name=Dmel\gypsy2;source=AL035631;type=LTR;subtype=Gypsy | |
| FBte0001040 . five_prime_LTR 1 351 . + 1 Ontology_term=SO:0000425 | |
| FBte0001040 . three_prime_LTR 6489 6840 . + 1 Ontology_term=SO:0000426 | |
| FBte0000956 . LTR_retrotransposon 1 7404 . . . ID=FBte0000956;name=Dmel\accord;source=?;type=LTR;subtype=Gypsy | |
| FBte0000956 . five_prime_LTR 1 557 . + 1 Ontology_term=SO:0000425 | |
| FBte0000956 . three_prime_LTR 6482 6910 . + 1 Ontology_term=SO:0000426 | |
| FBte0000956 . CDS 1552 2604 . + 1 Ontology_term=SO:0000316 | |
| FBte0000559 . terminal_inverted_repeat_element 1 3409 . . . ID=FBte0000559;name=Dmel\1360;source=AC005453;type=DNA;subtype=P | |
| FBte0000559 . terminal_inverted_repeat 1 30 . + 1 Ontology_term=SO:0000481 | |
| FBte0000559 . terminal_inverted_repeat 3379 3408 . + 1 Ontology_term=SO:0000481 | |
| FBte0000559 . start_codon 970 972 . + 1 Ontology_term=SO:0000318 | |
| FBte0000559 . CDS 970 2718 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0066320,SPTREMBL:Q86BW1,NCBI_PROTEIN:AAN39288.1;name=Dmel\1360\T;translation=MNASDKECILACDEVAIKKNLTYNVSVDIIDGIEHLLDRSNKIGSHICVFVLRGILKKWKFILNYFVAETNIKGDCLKSLIYKNIIIAETIGFKVRGVVYDQGGNNRKCTSLLEVTNEKPYFTLNNKKYMFYDIPHLFKSVRNNFLRANFETPDGLVDFDVIREVYELDHGSVTRMTKLTRSHVNPTRFELMRVCLATQTLSHTVAAAIKTCNQNKQLHRNSSEVAASTAAFVQKDNDYFDCLNSRVLTDKNPMKCALQVNNGVWNKLKEMQEYLKSVKYHGNKIYCVDGLIQTTEAIFGLVEDLFKDHTDHFFFLTSRVNQDPLENIFACVRAKGGNCRNPSVNEFNIIIAKLISLHIFKFSQKSNCESDDDVMLPIEFDSIIYQPFVEKKEIQQQEYSVSFSKIVQDNERYFDQNIDNFLCNDVPIELTSSRYFVGYIAKGSSCDKCRSVILKETEHLTAPSELFIHEKNYSIESDFGKLRAPSDLFFNIYKIHIKAFENIFKNNKKQMCIKKFIVEQCIKCTNESSAFPLWFYENNECYAHRTDLLNKLIKVLLFKHCKWTVIADRQKKQAKLSILSHE | |
| FBte0001030 . LTR_retrotransposon 1 6973 . . . ID=FBte0001030;name=Dmel\gypsy3;source=AC007477;type=LTR;subtype=Gypsy | |
| FBte0001030 . five_prime_LTR 1 397 . + 1 Ontology_term=SO:0000425 | |
| FBte0001030 . three_prime_LTR 6576 6972 . + 1 Ontology_term=SO:0000426 | |
| FBte0001030 . CDS 1046 2326 . + 1 Ontology_term=SO:0000316 | |
| FBte0000357 . LTR_retrotransposon 1 4032 . . . ID=FBte0000357;name=Dmel\invader1;source=?;type=LTR;subtype=Gypsy | |
| FBte0000357 . five_prime_LTR 1 423 . + 1 Ontology_term=SO:0000425 | |
| FBte0000357 . three_prime_LTR 3609 4032 . + 1 Ontology_term=SO:0000426 | |
| FBte0000357 . CDS 456 1321 . + 1 Ontology_term=SO:0000316 | |
| FBte0000357 . CDS 1919 2320 . + 1 Ontology_term=SO:0000316 | |
| FBte0000357 . CDS 2390 2923 . + 1 Ontology_term=SO:0000316 | |
| FBte0001084 . LTR_retrotransposon 1 5124 . . . ID=FBte0001084;name=Dmel\invader2;source=?;type=LTR;subtype=Gypsy | |
| FBte0001084 . five_prime_LTR 1 265 . + 1 Ontology_term=SO:0000425 | |
| FBte0001084 . three_prime_LTR 4859 5124 . + 1 Ontology_term=SO:0000426 | |
| FBte0000619 . LTR_retrotransposon 1 5484 . . . ID=FBte0000619;name=Dmel\invader3;source=?;type=LTR;subtype=Gypsy | |
| FBte0000619 . five_prime_LTR 1 298 . + 1 Ontology_term=SO:0000425 | |
| FBte0000619 . three_prime_LTR 5186 5484 . + 1 Ontology_term=SO:0000426 | |
| FBte0000800 . non_LTR_retrotransposon 1 3102 . . . ID=FBte0000800;name=Dmel\G2;source=AC006215;type=LINE;subtype=Jockey | |
| FBte0000800 . CDS 264 2960 . + 1 Ontology_term=SO:0000316 | |
| FBte0000140 . non_LTR_retrotransposon 1 4470 . . . ID=FBte0000140;name=Dmel\Cr1a;source=?;type=LINE;subtype=CR1 | |
| FBte0000140 . CDS 435 1466 . + 1 Ontology_term=SO:0000316 | |
| FBte0000140 . CDS 1622 4294 . + 1 Ontology_term=SO:0000316 | |
| FBte0000927 . terminal_inverted_repeat_element 1 1666 . . . ID=FBte0000927;name=Dmel\Tc1;source=?;type=DNA;subtype=Tc1-Mariner | |
| FBte0000927 . terminal_inverted_repeat 1 26 . + 1 Ontology_term=SO:0000481 | |
| FBte0000927 . terminal_inverted_repeat 1640 1666 . + 1 Ontology_term=SO:0000481 | |
| FBte0000927 . CDS 359 1354 . + 1 Ontology_term=SO:0000316 | |
| FBte0000103 . non_LTR_retrotransposon 1 4789 . . . ID=FBte0000103;name=Dmel\Doc2-element;source=?;type=LINE;subtype=Jockey | |
| FBte0000103 . CDS 1315 1989 . + 1 Ontology_term=SO:0000316 | |
| FBte0000103 . CDS 2023 4674 . + 1 Ontology_term=SO:0000316 | |
| FBte0001140 . non_LTR_retrotransposon 1 4740 . . . ID=FBte0001140;name=Dmel\Doc3-element;source=?;type=LINE;subtype=Jockey | |
| FBte0001140 . CDS 221 1939 . + 1 Ontology_term=SO:0000316 | |
| FBte0001140 . CDS 1939 4608 . + 1 Ontology_term=SO:0000316 | |
| FBte0000608 . non_LTR_retrotransposon 1 5402 . . . ID=FBte0000608;name=Dmel\Ivk;source=?;type=LINE;subtype=I | |
| FBte0000608 . CDS 192 1511 . + 1 Ontology_term=SO:0000316 | |
| FBte0000608 . CDS 1607 5290 . + 1 Ontology_term=SO:0000316 | |
| FBte0000666 . non_LTR_retrotransposon 1 5443 . . . ID=FBte0000666;name=Dmel\Rt1c;source=?;type=LINE;subtype=R1 | |
| FBte0000688 . LTR_retrotransposon 1 6852 . . . ID=FBte0000688;name=Dmel\gypsy4;source=?;type=LTR;subtype=Gypsy | |
| FBte0000688 . five_prime_LTR 1 287 . + 1 Ontology_term=SO:0000425 | |
| FBte0000688 . three_prime_LTR 6565 6852 . + 1 Ontology_term=SO:0000426 | |
| FBte0000688 . CDS 731 1987 . + 1 Ontology_term=SO:0000316 | |
| FBte0000688 . CDS 2241 5073 . + 1 Ontology_term=SO:0000316 | |
| FBte0000688 . CDS 5174 6667 . + 1 Ontology_term=SO:0000316 | |
| FBte0000292 . LTR_retrotransposon 1 3105 . . . ID=FBte0000292;name=Dmel\invader4;source=?;type=LTR;subtype=Gypsy | |
| FBte0000292 . five_prime_LTR 1 346 . + 1 Ontology_term=SO:0000425 | |
| FBte0000292 . three_prime_LTR 2759 3105 . + 1 Ontology_term=SO:0000426 | |
| FBte0000292 . CDS 395 1267 . + 1 Ontology_term=SO:0000316 | |
| FBte0000906 . non_LTR_retrotransposon 1 5453 . . . ID=FBte0000906;name=Dmel\baggins;source=?;type=LINE;subtype=Loa | |
| FBte0000906 . CDS 398 1771 . + 1 Ontology_term=SO:0000316 | |
| FBte0000906 . CDS 1771 5385 . + 1 Ontology_term=SO:0000316 | |
| FBte0001171 . non_LTR_retrotransposon 1 4605 . . . ID=FBte0001171;name=Dmel\G3;source=?;type=LINE;subtype=Jockey | |
| FBte0001171 . CDS 787 1818 . + 1 Ontology_term=SO:0000316 | |
| FBte0001171 . CDS 1982 4504 . + 1 Ontology_term=SO:0000316 | |
| FBte0001033 . terminal_inverted_repeat_element 1 912 . . . ID=FBte0001033;name=Dmel\mariner2;source=?;type=DNA;subtype=Tc1-Mariner | |
| FBte0001033 . terminal_inverted_repeat 1 29 . + 1 Ontology_term=SO:0000481 | |
| FBte0001033 . terminal_inverted_repeat 883 912 . + 1 Ontology_term=SO:0000481 | |
| FBte0001033 . CDS 134 802 . + 1 Ontology_term=SO:0000316 | |
| FBte0000626 . terminal_inverted_repeat_element 1 2167 . . . ID=FBte0000626;name=Dmel\transib1;source=?;type=DNA;subtype=Transib | |
| FBte0000626 . terminal_inverted_repeat 1 36 . + 1 Ontology_term=SO:0000481 | |
| FBte0000626 . terminal_inverted_repeat 2132 2167 . + 1 Ontology_term=SO:0000481 | |
| FBte0000626 . CDS 544 1926 . + 1 Ontology_term=SO:0000316 | |
| FBte0000725 . terminal_inverted_repeat_element 1 2883 . . . ID=FBte0000725;name=Dmel\transib3;source=?;type=DNA;subtype=Transib | |
| FBte0000725 . terminal_inverted_repeat 1 40 . + 1 Ontology_term=SO:0000481 | |
| FBte0000725 . terminal_inverted_repeat 2571 2610 . + 1 Ontology_term=SO:0000481 | |
| FBte0000725 . CDS 543 2610 . + 1 Ontology_term=SO:0000316 | |
| FBte0000885 . terminal_inverted_repeat_element 1 2844 . . . ID=FBte0000885;name=Dmel\transib2;source=?;type=DNA;subtype=Transib | |
| FBte0000885 . terminal_inverted_repeat 1 43 . + 1 Ontology_term=SO:0000481 | |
| FBte0000885 . terminal_inverted_repeat 2801 2844 . + 1 Ontology_term=SO:0000481 | |
| FBte0000885 . CDS 543 2612 . + 1 Ontology_term=SO:0000316 | |
| FBte0000308 . LTR_retrotransposon 1 7369 . . . ID=FBte0000308;name=Dmel\gypsy5;source=AE003485;type=LTR;subtype=Gypsy | |
| FBte0000308 . five_prime_LTR 1 429 . + 1 Ontology_term=SO:0000425 | |
| FBte0000308 . three_prime_LTR 6940 7368 . + 1 Ontology_term=SO:0000426 | |
| FBte0000308 . CDS 708 1865 . + 1 Ontology_term=SO:0000316 | |
| FBte0000308 . CDS 2156 5344 . + 1 Ontology_term=SO:0000316 | |
| FBte0000308 . CDS 5374 6612 . + 1 Ontology_term=SO:0000316 | |
| FBte0001175 . LTR_retrotransposon 1 7826 . . . ID=FBte0001175;name=Dmel\gypsy6;source=?;type=LTR;subtype=Gypsy | |
| FBte0001175 . five_prime_LTR 1 407 . + 1 Ontology_term=SO:0000425 | |
| FBte0001175 . three_prime_LTR 7419 7826 . + 1 Ontology_term=SO:0000426 | |
| FBte0001175 . CDS 1026 2003 . + 1 Ontology_term=SO:0000316 | |
| FBte0001175 . CDS 2277 5315 . + 1 Ontology_term=SO:0000316 | |
| FBte0001175 . CDS 556 7012 . + 1 Ontology_term=SO:0000316 | |
| FBte0000188 . LTR_retrotransposon 1 4038 . . . ID=FBte0000188;name=Dmel\invader5;source=?;type=LTR;subtype=Gypsy | |
| FBte0000188 . five_prime_LTR 1 352 . + 1 Ontology_term=SO:0000425 | |
| FBte0000188 . three_prime_LTR 3686 4038 . + 1 Ontology_term=SO:0000426 | |
| FBte0001178 . LTR_retrotransposon 1 4917 . . . ID=FBte0001178;name=Dmel\diver2;source=?;type=LTR;subtype=Bel-Pao | |
| FBte0001178 . five_prime_LTR 1 385 . + 1 Ontology_term=SO:0000425 | |
| FBte0001178 . three_prime_LTR 4532 4917 . + 1 Ontology_term=SO:0000426 | |
| FBte0001178 . CDS 436 4147 . + 1 Ontology_term=SO:0000316 | |
| FBte0001174 . terminal_inverted_repeat_element 1 2656 . . . ID=FBte0001174;name=Dmel\transib4;source=?;type=DNA;subtype=Transib | |
| FBte0001174 . terminal_inverted_repeat 1 36 . + 1 Ontology_term=SO:0000481 | |
| FBte0001174 . terminal_inverted_repeat 2621 2656 . + 1 Ontology_term=SO:0000481 | |
| FBte0001174 . CDS 545 2152 . + 1 Ontology_term=SO:0000316 | |
| FBte0000709 . terminal_inverted_repeat_element 1 1735 . . . ID=FBte0000709;name=Dmel\S2;source=?;type=DNA;subtype=Tc1-Mariner | |
| FBte0000709 . terminal_inverted_repeat 1 233 . + 1 Ontology_term=SO:0000481 | |
| FBte0000709 . terminal_inverted_repeat 1501 1735 . + 1 Ontology_term=SO:0000481 | |
| FBte0000709 . CDS 403 1437 . + 1 Ontology_term=SO:0000316 | |
| FBte0000267 . LTR_retrotransposon 1 4558 . . . ID=FBte0000267;name=Dmel\Dm88;source=?;type=LTR;subtype=Copia | |
| FBte0000267 . five_prime_LTR 1 198 . + 1 Ontology_term=SO:0000425 | |
| FBte0000267 . three_prime_LTR 4360 4558 . + 1 Ontology_term=SO:0000426 | |
| FBte0000267 . CDS 317 4285 . + 1 Ontology_term=SO:0000316 | |
| FBte0000982 . non_LTR_retrotransposon 1 4236 . . . ID=FBte0000982;name=Dmel\Juan;source=AY180919;type=LINE;subtype=Jockey | |
| FBte0000982 . CDS 179 1330 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\Juan\ORF1;translation=MRTKRNKPLVERQNERGSKQFTNYFRPLQTLDDDNDDKPIETDTLDEIIIKPPPITLIKQNTKFVHELMAKIKTDDYFIKTISIGIKIFLPNMDCFNAACNQLKEHNCEFYTYDTRSNKPYKAILSGLDKLPIETVKSMLQNLGLQCTEVKIVEKKTKSDHELLLYIVYFVNKSITVKELRKNFMYVNHTKVRWEYKVKLQNKITQCYNCQLFGHGSNNCSVKTSCAHCAGSHQTAVCMDVNNKKCANCKGDHPSTELTCPCRISYLNLLSKRSSQRIGRNNLEAHGMRNSKQHIAPSALFGNQPQISLPTQTKRVQQLNFGSYSNALTNIHTLPNPKANITNETNLFSCEEINSLLSELITRFNECSNKGEQFQVISQLAIKYVYTNK | |
| FBte0000982 . CDS 1329 3983 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0062541,SPTREMBL:Q8I7P8,NCBI_PROTEIN:AAN87272.1;name=Dmel\Juan\pol;translation=MFTQTNNFIDNLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNHKAKASTLDLCLTNIPNQLANPAVMQELSSDHLPVVIKYSTNFMRNVKTYPILGRANWALFKRIINERLMVEEVVVNCSQISTLDIDNLIGSFTRVINYAFLKAVPHKPIHHSKLTLPVHITELFKTRNIIQRQWFRSRHPLLKSRCDHLNYIIRKELFIYNNAKWNNKLQKLDKCSKPFWNITKAIKKRKQIVPCLSKADEIYASGKEKANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGVQKVQQKIQY | |
| FBte0000314 . LTR_retrotransposon 1 2483 . . . ID=FBte0000314;name=Dmel\frogger;source=AF492763;type=LTR;subtype=Copia | |
| FBte0000314 . five_prime_LTR 1 203 . + 1 Ontology_term=SO:0000425 | |
| FBte0000314 . three_prime_LTR 2281 2483 . + 1 Ontology_term=SO:0000426 | |
| FBte0000314 . CDS 997 2244 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0061512,SPTREMBL:Q8T5U5,NCBI_PROTEIN:AAM11672.1;name=Dmel\frogger\polyprotein;translation=MLLAVAAEKDLHMHQIDISNAYLNSDLEEDVYLKQPKNYVDKENPGKVLKLQKAIYGLKQSERLWNDALNEVLQNMGFKRSKNEACLYYKKQQNGFSYIAVYVDDLIIISPKESDIEDIKGSIATKFDMKDGGQLRYFLGMEISRKGQTGPIKLCQKRYIENLLRRYGMQSCRLVGTPFDPGYESGCTNEKCAKVNLTHFQSLIGSLMYLAVVSRPDILHSVSKLSQRNTDPHHEDEAAAKHVLRYLCGTINLSIIYMKTGELVKEFADADWANDKVDRKSYSGYAFLMAGSAFSWGSSKQSVIAQSSTEAEYIALSTAAKEAVFLRRLLQEMGWFDKGPLKLLCDNLSASSIAKNPINHKRTKHIDVRYHFIRDKVNKNEIIVEYVNTQNNVADILTKAKALWLFEITWICLNL | |
| FBte0000692 . LTR_retrotransposon 1 7318 . . . ID=FBte0000692;name=Dmel\rover;source=AF492764;type=LTR;subtype=Gypsy | |
| FBte0000692 . five_prime_LTR 1 367 . + 1 Ontology_term=SO:0000425 | |
| FBte0000692 . three_prime_LTR 6952 7318 . + 1 Ontology_term=SO:0000426 | |
| FBte0000692 . start_codon 1282 1284 . + 1 Ontology_term=SO:0000318 | |
| FBte0000692 . CDS 1282 2535 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAM11673.1;translation=MATASPIILSDSNMSQVERQINAVEIFNGDPNTLHTFITRIDFILALYQTTDERQKLIIYGHIERNISGDVIRTLGTNNFTSWIELRTRLILYYKPQAPSHQLLEDFRNIQYKGNIRQFLEEAEKRRQVLMSKLELENNSAETALFTRLIQDSIENLILKLPNHIHLRIVNCQIPDLRSLINILQEKGLYEPQTLNKDNFKPAPNSNRTPNNLPNRQVNGQNKPITPFQPYHNNVFQPYYPPYPYAPIHTPRPNQTPFPQYQPRPTYPQPNIPRPNPVFNRQNIFDQNRFGPNQTYTPNNFPPTGNTQTNNPVKRQRPSDSGQTKMSIEELRYQEMVSNQPEYPYHYYYPYYPDNFQPQPYPYQMSYIPDPTQIPFEQDHDTSDKTQQEQTAPNDDESDNTKEAENFRLVAPDQTNI | |
| FBte0000692 . start_codon 2595 2597 . + 1 Ontology_term=SO:0000318 | |
| FBte0000692 . CDS 2595 5144 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAM11674.1;translation=MLTWNIFETPIQQTNHLIHTSNGSVTINETTTIPPNNYFPIAQEFLIHKFSDHYDMLIGRKLLSKAKAIIDYQKKTATLFNKVYKIKDTEKLTDQNHAQVDSSFPQDPTFLETSTLQENLFRLNHLNAEEKYKLTNLLTRFKDIQFHEGDKLSFTNQEKHTINTTHNIPVYSKMYSFQQSYEQEVERQIQEMLEQGIIRESSSPYCSPIWVVPKKLDASGQQKLRIVIDYRKLNEITINDRYPMPNIDEILGKLGRSNYFTTIDLAKGFHQIEMDSESIAKTAFSTKYGHYEYTRMPFGLKNAPATFQRCMNNLLRPLLNKNCLVYLDDIIVFSTSLEEHLQSLEAVFEKLSQANLKLQLDKCEFLRQETTFLGHVITKDGIKPNPEKIKAIQDYPLPSKPKEIKAFLGITGYYRKFIPNFSDIAKPLTKCLKKGVKIDTKHKEYIEAFQKLKLLISEDPILKIPNFERKFVLTTDASNVALGAVLSQDGHPISYISRTLNEHEVNYSAIEKELLAIVWATKTFRHYLLGRHCEIASDHQPLCWLHKLKEPNSKLTRWKIRLSEYDFDIKYIKGKENHVADALSRIKIEQAFFGESTQHSAEEDNSDLIGLSEKAINYHKRQIIFSKGPNSSIEHETYFKKQIIHISYKEMTLEAAKQYLLNHFCSKNSALYIESDADFEMIQNAYTTTMNPKCTKIFRSLVLLKNIPTYASFKELILNTHEKLLHPGIQKTVKLFSENYYFPNSQLLIQNIINECQVCNLAKTEHRNTEMPMKITPKPEHCRDKFVIDIYSSEGNHYLSCIDIYSKFATLEQIKTKDWVECKNALMRIFNQLGKPKLLKADRDGDSPA | |
| FBte0000692 . start_codon 5823 5825 . + 1 Ontology_term=SO:0000318 | |
| FBte0000692 . CDS 5823 6575 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAM11675.1;translation=MLRELNAITLHQTNRQKRGLINIMGSAFKYLFGTLDNNDRIQIHNQLESATNNSINIHEMSDIIQLINSNMQKIKEFEDEHNNREQMLYELIQFTEYIEDIAMGMQLSRLGLFNPKLLNYDKLENVDSSNILQTKTSTWINTNQLLIIAHIPTKQKTIHTINIIPYPDNNGYQLDHIDKDTYFEEQDKIYNQNYQEINNECIKNIIKRTNPICNFVPITVEQIIKYVEPNSIITWNLNNTIIEQKLPRNK | |
| FBte0001166 . LTR_retrotransposon 1 7650 . . . ID=FBte0001166;name=Dmel\accord2;source=AF541947;type=LTR;subtype=Gypsy | |
| FBte0001166 . five_prime_LTR 1 223 . + 1 Ontology_term=SO:0000425 | |
| FBte0001166 . three_prime_LTR 7432 7650 . + 1 Ontology_term=SO:0000426 | |
| FBte0001166 . CDS 2298 3512 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0063781,NCBI_PROTEIN:AAN34649.1;name=Dmel\accord2\gag;translation=MLGKKANISNTVRGRLGLRSESGLSEIREATEPKEKDQSVQSEDNNPTNTMDSGNDTAAISPIVNSSRNTNLSLQQLLTLVHQLPTYEGPPDNLDRFIDRVDQLLLLASSVDQTTGGKYLLGTIRDKIKGRADEALNVCDVLLTWDDIKINLKRLYSSKKTEEMLVRELHNLPDGLSMGKLYYSAAKIRSDLMSLAREADPSAHSLAVKRDQYDRFCLNTFLTGLKDPLSSAIRNQRPETIEKAYEYGQIELNFHRSLNKHQDNRRRDNPFHRNHPYAKGQPTNSDYNNRYIPRQQNYNNGNNARHVPRYDNNSNNNDSRFIQRQQNFNNNNNRRFTRQHNSHNDSNGRQDRETLGRNPFHNNEQPDQTLSHQNRNKHNPSAPLCNINDDANFLLEASGSQSAT | |
| FBte0001166 . CDS 3811 5034 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0063780,NCBI_PROTEIN:AAN34648.1;name=Dmel\accord2\pol;translation=MDILSSLNAKINLAESILETPETAIPILTRANPVDTVYNLPQNTKMLLPLPVNLMEGDFIYETTNLDNQVSITGGLNTANAGSAYFEVCNNSDQIQTLYLEEPLQAEEFSSQTHQYLNCMTAATDTERQDDQQLNILTEHLNSEEKQYILKLCKSFKRLFHNENNQLTFSNAIKHSIPTTDNIPIHTKSYRYPFVHKDEVRKQISKMLEQNIIKNSHSPWSAPVWVVPKKSDNIGEKKWRLVIDFRKLNEKTVSDRYPIPNIADILDSIGKTMYFTTIDLASGFHQIQMNPRDASKTAFTVENGHYEFTRMPFGLKNAPATFQRVMDNVLGDLVGNVCLVYLDDIIVFSPSLQKHIADIKSVFTKLQNANLKIQPSKCSFLRKEIDFLGHIVTQEGVKPNPLKIQTI | |
| FBte0000926 . LTR_retrotransposon 1 6450 . . . ID=FBte0000926;name=Dmel\McClintock;source=AF541948;type=LTR;subtype=Gypsy | |
| FBte0000926 . five_prime_LTR 1 498 . + 1 Ontology_term=SO:0000425 | |
| FBte0000926 . three_prime_LTR 5953 6450 . + 1 Ontology_term=SO:0000426 | |
| FBte0000926 . start_codon 1279 1281 . + 1 Ontology_term=SO:0000318 | |
| FBte0000926 . CDS 1279 2562 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0063916,SPTREMBL:Q8IT57,NCBI_PROTEIN:AAN34650.1;name=Dmel\McClintock\gag;translation=MAVAAPSPIILSDSNMIQVERQINGVEQFNGDPQTLYTFISRIDFILALYQTTDERQKLTIFGHIERNIAGEVIRTLGVTNLTTWTELRTHLILNYKPQRPNHLLLEDFRNTQFRGNVREFLEEAERRRQILTNKLDLESDTAETTLYNQLIRTSIETLILRLPIHIQLRIVKCEIPNLRSLINILQEKGIYEIATTYKNNTKPVSNPIKSPNNATHRQTTNYYNHTTPFQPSYNAMYQPIRQPISYIPPQLPRTNPNPFSQYQYRQLHPQPNVSVIAQPRPLNRQHTFDQNRPGLSYSNALNTRENITTGGPALKRQRPSDSGQSRMSFDEAHYQEELDQTHQQFNPYMHYGNHPQYPFDLYMPYGPPPNNIPIYYMPYDPPQQHPVGIQEMAEAREEPTEPPMELITEAQTAENFRPQASEQANS | |
| FBte0000926 . start_codon 2622 2624 . + 1 Ontology_term=SO:0000318 | |
| FBte0000926 . CDS 2622 5642 . + 1 Ontology_term=SO:0000316;db_xref=SPTREMBL:Q8IT56,FLYBASE:FBgn0063915,NCBI_PROTEIN:AAN34651.1;name=Dmel\McClintock\pol;translation=MATQNFFKLPIQEIAKKINSSNGQFIAQKKVTLPKNNLFPKPYDFFIYPFSTKYDLILGRQLLDEGTTSVNYGPRTVTIYGHVHEMIDAFLPSEEIHIQDTQNNSFRLDHLNSEEKAKLITLLKEFQDLQYKKGDQLTFTNNVKHTIRTSHNDPVYRKPYGYAPGLDTEVENQIKEMLDQGIIRESNSPYCSPIVVVPKKPDISGQKKYRIAIDYRYLNEITIADKYPIPNMDEILSKLGGCNYFTTIDLIKGFHQIEMDPESIPKTAFTTKTGHYEYTRMPFGLKNAPATFQRCMNDVLRPLLNKICMVYLDDIIVFSASLEEHLQSLRAVFQALSNANLKLQLDKCEFLKHDTYFLGHMVSPEGIRPNPEKLRAIENYPLPTKPKEIKSFLGLTGFYRKFIPHFAQIAKPLTTCLKKDKKVDIKNPEYIEAFKRLKLLISNDPILRSPDFKKKFVLTTDASNVALGAVLSQDGHPISYISRTLNDHETNYSTIEKELLAIVWATKTFRHYLLGRHFEIASDHQPLCWLHKMKEPNAKLTRWKFRLAEYDFDIKYVKGKENHVADALSRITIEEAFFTEATQHSAQEDNQNLISLTEKAVNNYNRQVIFTKGPEKVKQENYYKKKIIHISYETLTHKKAKQYLIDYFVNNHSALYIDSDADFETIQAAHKEIINPSTTKVIRSLTLLKNIKSYAEFKELILQSHEKLLHPGIQKTKKLFSENYFFPNSQLQIQNIINECQVCNLAKSEHRNTKVPFKLTPSIEFCRDKFVIDIYSVEGKHYLSCIDTYSKFATLEQIKTKDWIECKNALMRIFNQLGKPKLLKADRDGAFSSLALKEWLETEGVELQLNTTKTGVADIERFHKTINEKIRIINTMKNTETDLSKIETILYTYNHKTKHDTTGQTPAHIFLYAGQPTLNTQELKRTKIDKLNKGREDHDIDTRYRKGPLQKGKLDNPYKPTKNVEQTDADHYKITNRNRAMHYYKTQFKKRKKINQTHTPTQMATS | |
| FBte0000151 . LTR_retrotransposon 1 7359 . . . ID=FBte0000151;name=Dmel\Stalker4;source=Release3na_arms;type=LTR;subtype=Gypsy | |
| FBte0000151 . five_prime_LTR 1 403 . + 1 Ontology_term=SO:0000425 | |
| FBte0000151 . three_prime_LTR 6957 7359 . + 1 Ontology_term=SO:0000426 | |
| FBte0000930 . terminal_inverted_repeat_element 1 1593 . . . ID=FBte0000930;name=Dmel\hopper2;source=AF541950;type=DNA;subtype=Transib | |
| FBte0000472 . LTR_retrotransposon 1 7672 . . . ID=FBte0000472;name=Dmel\Stalker2;source=?;type=LTR;subtype=Gypsy | |
| FBte0000472 . five_prime_LTR 1 424 . + 1 Ontology_term=SO:0000425 | |
| FBte0000472 . three_prime_LTR 7248 7672 . + 1 Ontology_term=SO:0000426 | |
| FBte0001157 . LTR_retrotransposon 1 372 . . . ID=FBte0001157;name=Dmel\Stalker3;source=?;type=LTR;subtype=Gypsy | |
| FBte0001157 . long_terminal_repeat 1 372 . + 1 Ontology_term=SO:0000286 | |
| FBte0000963 . terminal_inverted_repeat_element 1 1064 . . . ID=FBte0000963;name=Dmel\Bari2;source=AF541951;type=DNA;subtype=Tc1-Mariner | |
| FBte0000963 . five_prime_LTR 1 119 . + 1 Ontology_term=SO:0000425 | |
| FBte0000963 . three_prime_LTR 946 1064 . + 1 Ontology_term=SO:0000426 | |
| FBte0000963 . start_codon 565 567 . + 1 Ontology_term=SO:0000318 | |
| FBte0000963 . CDS 565 873 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,NCBI_PROTEIN:AAN34654.1;translation=MKEVDINSYEKRLSFALEYKEKPIEFWFDVLWTDEIGFQFQRSFSKKFMHFPKKLKVECRPANQSIWWWHGDVLGLFKLLWIWRHGTDRGYNKSNRIPPYLK | |
| FBte0000304 . LTR_retrotransposon 1 8556 . . . ID=FBte0000304;name=Dmel\Max-element;source=AJ487856;type=LTR;subtype=Bel-Pao | |
| FBte0000304 . five_prime_LTR 1 321 . + 1 Ontology_term=SO:0000425 | |
| FBte0000304 . three_prime_LTR 8236 8556 . + 1 Ontology_term=SO:0000426 | |
| FBte0000304 . polyA_signal_sequence 282 287 . + 1 Ontology_term=SO:0000551 | |
| FBte0000304 . polyA_signal_sequence 8445 8450 . + 1 Ontology_term=SO:0000551 | |
| FBte0000304 . primer_binding_site 394 411 . + 1 Ontology_term=SO:0005850 | |
| FBte0000304 . RR_tract 8296 8305 . + 1 Ontology_term=SO:0000435 | |
| FBte0000304 . CDS 1710 7202 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0063918,NCBI_PROTEIN:CAD32253.1;name=Dmel\Max-element\gag-pol;translation=MPLEGDKKKTPAPGKEQKFNPQSPISTRGRPAPKSVSPRVKTATPTPKPKVLPSTSSKTTPRLVISRPVTRASSESSLSRKSESPSAVGTDFLRVTRSTTKRMASSEQPTPANAALHKFIAVSDRVSLFEAKINTPDQASPSLHTLQVRLQQVRALWDKVEREYETCSDLMAQEGSLDTVPILQAKYDYCYSVYESCAAQIGETIDRATPQVAQAPSQPLISSGCRLPPCDTEVFDGDYLRWPTFRDLFTAIYVNNPRLTPVEKLFHLLTKTSGEAKAIVAKSPLTNDGFASAWEALRDRFQNKRLLVNSQLKLLFNLSSISQESGHALKELQSTIQGCLTALEHSQVSTENWDCILVFLCASKLPKQTLSLWEQSLTAKSEIPAWEEMNAFLSERYRTLEAIEDMKPTQAVPKRLQSFETKVSTKQKGCDICSKENHPVRLCPRFLQMSVDSRSGYIKKKQLCLNCFARGHQLRDCTSMHSCFTCKGRHHTLLHRSPPNSENASSSTSPPTQQLPRPSSRNASASTSAVQNFFASGTSAVLLSTAMIDVCHLGTNYRARALIDSGSEATFISERLFNLIKLPFRNTRTQVSGLNHSVSAKSSKLCHFGIRSPTKPGLQLDTEAYVLPELSGKLPSYPIPRNSLKDLPALRWADPTFFESSQIDVLIGADILPSIMMDGTRQNICGSLLGQETIFGWVLTGPISKGKPKRVASFTTQVHQTGDPDSLDTLLSKFWEVEDLPVKMVKESDSYCERNFLQTTTKDASGRYVVTLPFRDPENTGSDLGYSRSIALAQFLRNENRLKRDFPLKEQYDSVIQEYLDLGHMKEVPPTHNSPSYHLPHHAVVKPESTTTKLRVVFNASSPSANGISLNDILHAGPVLQSDLTIQVLKWRYFQYVFSADITKMYRQIWVDPKHTPFQRILFRNKEGDIRDFELKTVTFGVNCAPFLAIRVLQQLAEDIQVPFPNASRIIQQHMYVDDVLAGANSVNEAQSSIRELQAALSASGFPLRKWTSNNKSVLKDVPAEHLLHSEFLDIDAESTAKTLGIRWRAKSDEFYFVPPDIVVEASYTKREVLSQIARLFDPAGWLAPFIIRSKIFMQEIWLQNLGWDDKLPTEMSQRWQSFLEEYSDLNQIRVPRWIWYQPEVVIEHHGFCDASQRAYGAAIYIRVEMGQKILTRLLTAKTRVAPVKTVSLPRLELCGAVLLTEMVTAILPHMPSASSDIRCWTDSTIVLAWLRKPACNWTTFVANRVAKITQATPVDCWAHVRSEQNSADLASRGVSLQELAENHLWWHGPEWLQGPRELWPAQSDTLPVTELEQRAVKVHFVKGPSIDFLERFSKLDKALRVLVYVQRFFKRCRKGSFLPSSRPTSEEIREAERTLTSIAQRRAYGQELQHLTEKRPLPVSSPLVTLFPFIDQHGLLRACGRLTASKTLQYDERHPILLPYDCRLSRLIVQFTHQITLHGGSQLIVRLIRTKYWIPKIKNLVKAVVNPCKICTIYKKRLQTQLMGDFPTDRVSFSRAFTYTGIDYAGPFEIKNYTGRACLITKGYVCVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVARRGCPQRVHSDNGKTFVGAAALISRDFLQAIKESVTDAYSHQGLVWRFIPPGAPHMGGLWEAGVKSFKTLFLKSTSVRKYTFEELATLLAKIEACLNSRPLSPMSEDPSDLLALTPGHFLIGGPLLSTAEPEIKGEAKSIINRWQHLKAQHQQFSARWKEEYLKELHKRSKWQFPTRNLQADDMVVVKEDNLPPNEWRLGRIVSAFPGADERIRVVEIRTSRGTIKRPVHKVILLPMEDKESSVPRD | |
| FBte0000420 . non_LTR_retrotransposon 1 1790 . . . ID=FBte0000420;name=Dmel\BS3;source=?;type=LINE;subtype=Jockey | |
| FBte0000420 . CDS 2 1618 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\BS3\RT;translation=IKRRCARKAPLADNSGAWCRTFIEQAEVFAVHLAERFQPLNLASPQDVDATHDQLSQALQMDLPMQPITPSEIADVIAKQNPKKAPGHDTTCNSTLRTLPRCAILYITLLFNAMVRLQYFPPQWKLGIISMIHKPGKPEKNPGSYRPISLLPSISKVFERLIAARMVRIMEAKGILPEHQFGFRAGHCTVEQLHRVVEQILSAFENKEYCNALFLDVREAFDRVWHSGILLKIKNTLPAPYFGLLRSYLEKRRFAVRFHSALSNEHNVAAGVPQGSVLGPLLYCLYSYDMPRPDVSLPGTSMLATFADDVCVTYRSCCEHDAADDIQDFASTFAEWAKRWNIGINGDKSANVCYTLKRKTPPAVLIDGTPVPQSNSAKYLGVILDRRLNFSKQVSAMRVRIRAAASKHFWLINSRSKLSLSNKVTIYKQIIAPIWRYGCQIWGLACDSQIRRIQAAQNKIARMITGCEWYVRNTTLHKDLKLATVFEAINMHSSRYHDRLERHRNRLAKALSRARPPRRLHRRQPKDLIIRSPLTRARR | |
| FBte0001042 . non_LTR_retrotransposon 1 754 . . . ID=FBte0001042;name=Dmel\BS4;source=?;type=LINE;subtype=Jockey | |
| FBte0001039 . non_LTR_retrotransposon 1 2791 . . . ID=FBte0001039;name=Dmel\Doc4-element;source=?;type=LINE;subtype=Jockey | |
| FBte0000791 . non_LTR_retrotransposon 1 4682 . . . ID=FBte0000791;name=Dmel\Porto1;source=?;type=LINE;subtype=Jockey | |
| FBte0000791 . start_codon 211 213 . + 1 Ontology_term=SO:0000318 | |
| FBte0000791 . CDS 211 1947 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,FLYBASE:FBgnXXXXXXX;name=Dmel\Porto1\ORF1,Dmel\Porto1\ORF2;translation=MSASDAQNQKRELQAKQNKNNSYLSFTHISNYTNNYQSLHPQSDGRARSCSPALERPNNYSQHRSAECAPNSSARTPTTTSAIPINTHSTLPLTAVTLSALPLWTLPLSATSETNTTTVATIATTTTVFYVSMPICSSSANIKTPSSIPASTKINKTQSSLPNQQNLKLYRDNQSPNSSKDLLNNNKKQRNKAQTATQKTLKKYWLAEPHSSNRFELLAQDDEDENQTDNGTNATINTQMQIEHKSAKPPPIYVQNVENIYALTTALNSLEETRYELKALSSNEIKIQPLETTHYHNILRLLKDKSTKYYTFRPKDQRGFKVILRNVHHATDKDDIINELAQQGHEVINLHNIQRYDSKQPLPLFSIELKMKDNNKDIYKIEHLLHCKVIFEPPRPKRTLPQCTNCQKYGHTKNYCTKDPTCVKCAGKHSSSSCTINTRSDRTSIKCALCSENHTANYKGCMVYKALQIQKYPTLRKKEIPVTETTHQTTQHSTTNNVVSLKTPALSYAEVLNKNQVTSHQTNSTPQPTIVPDIQPASTQLSQTAQNDFDELKQMMKQLIAQMTNMMNIFTLLLFKLDK,NRLQYYLSKLETTLSTNYSLWKATKKFTNSTIHKPPIKRNNNTWARSNKEKADTIYNDNAELPRQITNLNCAIKTITKAEIKSHIKQIKNKKAPGYDLIGGKILKELPDAIITYIRNLFNGILRLQYFPITWKVGQIKAIPKPNKNANTVSSYRPISLLPVLSKVFEKVLFEKLLFNRIEPILKQKNIIPPHQFGFRKQHSTVQQVHRVINKITDDFDKKKFCYAVYLDIAKAFDKVWHKGLLHKLRNILPYNLYTILQSYITDRYFYIKYDNECSDIMPVSAGVPQGSVLGPILYLIYTSDIPAPTTPGSMIATFADDTVLMSSSACEKTAASTLQQIMTQTVSWFERWGIEINKDKTQQVIYTKRQPKNFAIKINDNQILLHPYAKYLGLTIDSKLTWKQHILNKRNEIKNKFRQLNWLIGKHSKLELHNKIAIYKAIIKPIWTYGIELWGTASKSHLQLIQRTQSKMLRIITKAEWYIRNEDIHNDLNIETVNETIKKKQQKTHKSTT | |
| FBte0001002 . non_LTR_retrotransposon 1 3961 . . . ID=FBte0001002;name=Dmel\Fw2;source=?;type=LINE;subtype=Jockey | |
| FBte0001002 . start_codon 2 4 . + 1 Ontology_term=SO:0000318 | |
| FBte0001002 . CDS 2 1249 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\Fw2\ORF1;translation=XSTTQTAIDRYIQIKRKLSPQNYSMGNKSKINCDITRQKTNMPNNDNRFAILADLDDLPNSDKDIKKTPKPPPIYIREKSSSALVNKKMDLIEKDSFHIIPLTKGNIHETKVQVKTEVNFRALTKYLNDAKKNFYTYQPKSSKGLQSSIKGLRPEITPEEISGAQIEQGFKPKSVINIFNKDKKPQPLFKVELEPDSWALKKNESHPIYKLQYLLHRRISVEEPHKRKGPVQCANCQEYGHTKTYCTLRTVCVACGELHSSVNCPSNKADPGMKKCSNCGGNHTANYRGCPVYKDLKNRLHQKVTMMRGQSTPSTIIPSKHTPDVHLNSLTNRNVTFASALKSGLASTNPTTPFPLAEQNKVNADQPTGQPQGNIETMIFNLQQSMTEFMTFMRTTMENLMRNQDLLIQMLVSQQSK | |
| FBte0001002 . start_codon 1256 1258 . + 1 Ontology_term=SO:0000318 | |
| FBte0001002 . CDS 1249 1256 . - 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\Fw2\ORF2;translation=MAPLRITLWNANGVSRHKLEMAQFLQDKHIDVMLLSETHLTNKYKFQINGYIFYGTNHPDGKAHGGTGVLIRNRIKHTFRNDFGTNYLQATSLNIQLGNGQITLAAVYWPPRFTISENQFLDFFNTLGDRFIAAGDYNAKHTHWGSRLVTAKGKLLYKTIIKVSNKLSCASPGTPTYWPTDPRKIPDLIDFAVTRNISHNHINAESLPDLSSLAGLINYLQYADLKNSPCRVTSNRTNWLKYKKFVSSHIQCLNPRKKQTVQYMQRKPNVQIEQLVLKKRRLRREWQSYRSPFAKQGLNNATHTIRKEVINEQECAQRPYIAQLSPFSTKYPLWGLHPSVSPPVESVVPIRNSAGEWVRSDKHRASTFAEHLQNVFQPKPATNNFVLQEQTVVSQTTQNTIEFRPTEIAKIIKELKPNKSPGSDLINPKMIIELPFCAVQTICQLFNAINRIGHFPSLWKKSIIIMIPKPGKDHTVPSSYRPVSLLPCMSKLFEKCLLTFIIPYLRTFNKIPEHQFGFQEKHGTIExVNRITTEIRTAFEKREYCTAIFLDVAQAFDRVWLDGLMHKIMSTLPECTHKLLKSYLHNRVFSVRCGTVTSEDHIIEAGVPQGSVLGPTLYLLYTADIPTSRQLTISTFADDTAILSRSKCPRQATAQLALYLAHIEKWLSDWRIKVNEQKCKHVTFTLNRQDCPSLILNNTVIPKSNEVTYLGIHLDRRLTWRRHIEAKRTHLKLKANSLHWLLSIRSPLRLEYKVLLYNSVLKPTWTYGSQLWGNASNSSVEIIQRAQSKILRTITGAPWYVRSDNLHRDLFILPVRDEIAKQMEKYRNKLRAHPNRLARDLTRLSSRTRLRRNDMPTQR | |
| FBte0000636 . non_LTR_retrotransposon 1 3132 . . . ID=FBte0000636;name=Dmel\Fw3;source=?;type=LINE;subtype=Jockey | |
| FBte0000170 . helitron 1 564 . . . ID=FBte0000170;name=Dmel\Helitron;source=AE002840;type=RC;subtype=Helitron | |
| FBte0000720 . non_LTR_retrotransposon 1 3216 . . . ID=FBte0000720;name=Dmel\R1-2;source=?;type=LINE;subtype=R1 | |
| FBte0000838 . terminal_inverted_repeat_element 1 1644 . . . ID=FBte0000838;name=Dmel\Tc1-2;source=?;type=DNA;subtype=Tc1-Mariner | |
| FBte0000174 . non_LTR_retrotransposon 1 2841 . . . ID=FBte0000174;name=Dmel\G5A;source=?;type=LINE;subtype=Jockey | |
| FBte0000174 . start_codon 16 18 . + 1 Ontology_term=SO:0000318 | |
| FBte0000174 . CDS 16 2727 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=G5A\ORF;translation=MGPLRIPTWNSIGASLKTNEFLALIELHDIDILLLSEVHFSSRSNFRVNGFTLHTANHPDDSQHGGAAILVGSNISHQPFATLSQNHIQAVVIQLTASRGNFNVASVYCPPTLRWTDAIVGQFITQFGTKFLAAGDWNAKHRWWGNYRMRTRGRVLYSALAEEGIDIVATGEATCYPYRATASPSAIDFGISKGFRQQQIKVQLLSSDHLPLLFELDEDAQSFRSVTKMLSPQANIRIFKEHIEATVELNIPIDTCSRLEAYVDYFTPAIIEAARQATPTPHQARLTAIRRPPILSIEARDLLSHKRRLRRRYIATGDPSIYQQYSSTTNRLRRLLANNRKANLDTLLEGAGPDSNSGFSIWKLTRGIKRQPLFQSPIQDRGGLWLKTDDEKASAFASHLSSTFMPFNLTDDTNREAIANFLDTPTAPTRPIRHTSPQEVMMQLKALQPKKNPGYDGIDNRTAKFLPRKGVLALVKIFNVMLRLGHFPRQWKRARIVMIPKPGKSPTQIDSYRPISLLPTFSKVFERILLTRLMELPQVTEHIPQHQFGFRKSHGCPEQIHRLVKHITHGFEHKLYTVGVFLDVKQAFDKVWHEGLLYKMKDLLPAAHYAILSSFIADRTFDVAVRDSRSSMEHIHAGVPQGSVLGPFLYTLYTADMPTPVNNTDEASPAQLILATYADDTAMLASHSSLQFASNAVQEWLHAIERWTAKWNIAINCTKSACVTFTLRPQTCLGLLFDGNTIDYVSSHCYLGVHLDRTLSWKAHITAVRAKSSWKLKKLDWLFHSSKLHMATKALLIKAILGPTLTYAIQVWGTASKTQLNRLRVIQSRAARHASGLPWYVSNRVIERDLKVVPLGDQINFHSSRYADRLSAHPNTLANDLVDPISLRRLKRIHPHELLTRKIV | |
| FBte0000690 . non_LTR_retrotransposon 1 1192 . . . ID=FBte0000690;name=Dmel\G7;source=AC003788;type=LINE;subtype=Jockey | |
| FBte0000171 . LTR_retrotransposon 1 5486 . . . ID=FBte0000171;name=Dmel\gypsy7;source=AE003788;type=LTR;subtype=Gypsy | |
| FBte0000171 . five_prime_LTR 1 251 . + 1 Ontology_term=SO:0000425 | |
| FBte0000171 . three_prime_LTR 5236 5486 . + 1 Ontology_term=SO:0000426 | |
| FBte0000168 . LTR_retrotransposon 1 4955 . . . ID=FBte0000168;name=Dmel\gypsy8;source=AE003788;type=LTR;subtype=Gypsy | |
| FBte0000168 . five_prime_LTR 1 304 . + 1 Ontology_term=SO:0000425 | |
| FBte0000168 . three_prime_LTR 4652 4955 . + 1 Ontology_term=SO:0000426 | |
| FBte0000764 . LTR_retrotransposon 1 5349 . . . ID=FBte0000764;name=Dmel\gypsy9;source=AE002591;type=LTR;subtype=Gypsy | |
| FBte0000764 . five_prime_LTR 1 336 . + 1 Ontology_term=SO:0000425 | |
| FBte0000764 . three_prime_LTR 5014 5349 . + 1 Ontology_term=SO:0000426 | |
| FBte0000351 . LTR_retrotransposon 1 6006 . . . ID=FBte0000351;name=Dmel\gypsy10;source=?;type=LTR;subtype=Gypsy | |
| FBte0000351 . five_prime_LTR 1 364 . + 1 Ontology_term=SO:0000425 | |
| FBte0000351 . three_prime_LTR 5643 6006 . + 1 Ontology_term=SO:0000426 | |
| FBte0001041 . LTR_retrotransposon 1 4428 . . . ID=FBte0001041;name=Dmel\gypsy11;source=?;type=LTR;subtype=Gypsy | |
| FBte0001041 . five_prime_LTR 1 452 . + 1 Ontology_term=SO:0000425 | |
| FBte0001041 . three_prime_LTR 3977 4428 . + 1 Ontology_term=SO:0000426 | |
| FBte0001136 . LTR_retrotransposon 1 10218 . . . ID=FBte0001136;name=Dmel\gypsy12;source=AE003789;type=LTR;subtype=Gypsy | |
| FBte0001136 . five_prime_LTR 1 2336 . + 1 Ontology_term=SO:0000425 | |
| FBte0001136 . three_prime_LTR 7883 10218 . + 1 Ontology_term=SO:0000426 | |
| FBte0001136 . CDS 3141 4553 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\gypsy12\gag;translation=MGLDRSPTRKSPSVSNPVCKLCAAEISTQDLYVTTCHHEFYRECIGNHFKKSEICSRCKLTCRPPAEATERVGRETRSKTKNRRNSRRGSFDISQRCGEKLAVKLKIAATVDGGPSTSASGANANEASSSAVSANAALLAMERRLLATLSEKMADLVQNAITSSMQRIMPTPSPAVVVTASEMSADHPNAYERQYLASPNPVPSPRSASSDLFDRPDKVVHILNGWKIKYSGVGVSVDNFIYRVEAVTRQTLNGNFNLLCRNISVLFEGKANDFFWRYHKFDRVATMGTERFCTALRLQFRQSRDDGDIEELIRNTKQKPNETFDSFYDTVSELVDQLEQPWTANKLVRVLRNNLRPEIRHEILNLDVRTVSELREICKRREAFLADVRRCSSYAKDTPFKREISEVCHESEDEVRSTYEAENDIESFSLVCWNCRIEGHRYQECIAERRVFCYGCGAANTYKPSCRKCSKNFKVGMSKLPVKPKTSNAARNQSTMTDQ | |
| FBte0001136 . CDS 4740 7710 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\gypsy12\pol;translation=KKCKASLDYISSIPTGPRDPRPFLPMRLLNCLVYGLLDSGASISCIGGGVVQAAMENEKFKSLIGEAATADGNSQRIVGLLKIEVEYGDIKKLLKLYVVPSLKQDLYLGIDFWKLYDLLPANLKIAEILSPEPNQQTVVDQHELCEGDKAKLANVINCFPSFSQEGLGKTNLVSHSIDVGTARPVKQRHFPVSPAVEKAMYAEIDRMLRLGVIGESESAWSSPIVMVTKPGKVRICLECRKVNSFTEMDAYPLPQINGILSRLPRAEYISSLDLKDAYWQVPLDPKSRDKTAFTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLIVSSCFESHLNVLRELALQIKRAGLTLNVAKSHFCMRRVRYLGHIIGDGGIRTDPEKVSAITDFPLPKSLKSLRSFMGLCGWYRKFVANFATLSAPLTDLMTTKRKFLLTKEAIEAFSKLKECLSKAPVLCSPDFAKPFAIHCDASKSGVGAVLVQVSEEGDERPIAFVSKKLNKAQRNYTVTEQECLAAIVALKNFRAYVEGLPFKIITDHASLKWLMSNHDLNSRLARWALALQRFKFEIEHRKGSLNVVPDTLSRVNEEIVAAMDLQEDLIVDFDSEFFQSGDYVKLVETVKENTSNFSDLKVESGFLYRKAEHLTGERMHDEYAWKLWVPKELVSKILARAHDSPLAAHGGIHKTLERIRRYYFWPGLVSDVRAYISACEVCKSTKSQNFTLRPPLGKAPESQRFFQRLFIDFLGPYPRSRSGNIGIFIVLDHFSKYVFLKPVKKIDSSVVIKYLEDELFMTFGVPEVILSDNGSQFRARTFQRLIRYGVKHTLTAVHSPQANASERVNRSVIAAIRAYLRLDQKDWDEFLSRICCALRSAVHSSIGTSPYYMVFGQHMITSGSTYSLIRRLNLLDDRSLKFDRHESFEIMRKQAVDQMRNKHNENEKRCNIRSRVVSFVEGQEVYREISSQAVSKPVTTPSLDRRS | |
| FBte0000591 . LTR_retrotransposon 1 4885 . . . ID=FBte0000591;name=Dmel\invader6;source=NT_033778;type=LTR;subtype=Gypsy | |
| FBte0000591 . five_prime_LTR 1 393 . + 1 Ontology_term=SO:0000425 | |
| FBte0000591 . three_prime_LTR 4494 4885 . + 1 Ontology_term=SO:0000426 | |
| FBte0000773 . LTR_retrotransposon 1 7060 . . . ID=FBte0000773;name=Dana\Tom;source=Z24451;type=?;subtype=? | |
| FBte0000773 . five_prime_LTR 1 474 . + 1 Ontology_term=SO:0000425 | |
| FBte0000773 . three_prime_LTR 6587 7060 . + 1 Ontology_term=SO:0000426 | |
| FBte0000773 . intron 1277 5158 . + 1 Ontology_term=SO:0000188 | |
| FBte0000773 . CDS 859 2055 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0028827,SPTREMBL:V9H1F7,NCBI_PROTEIN:CAA80823.1;name=Dana\Tom\gag;translation=MAQPAQPENTLNESNLAEARGQLKDVPPFRGEPETLFTFISRVDYILSLYHTNDVRQQRILLGAIERNIEGHVTRTLGLPTIEDWPTLRSRMINEYKPQAPNYKLLENFRETPYKGNLRAFCEEAERRRQILISKLHLEGNQSNLIIYLQAVRDSMKTLVRKLPIQLFTILAHHDIPDLRSLINIAQNEGIYEEHINFETNKNIEIKNKTPNFYQNPKAFKNYPINQSQYQPRYPQYPHPLQPNFNPYMHAPRPIYTQQLSNNQPMGPGQTYPGPNRYMNPQPIFNRIPFPKSNFNLTPQTQQPRMPSNPNFPLQQTTKRPRPSDSEQTKMSIDELRLQEAQEYEQNYQQPYEQEYYDYTQYQDQTYEEQCQAPINQDQAEINFDENFQSPAPEDTNT | |
| FBte0000773 . CDS 2115 5237 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0028826,SPTREMBL:V9H1K3,NCBI_PROTEIN:CAA80824.1;name=Dana\Tom\pol;translation=MMRKNFFSLPIHNTECEVFTSNGPMTLKDSITLPSNNIFRTPEQFYLHDFSDDYDVLIGRKLLNKAQGIINYKTHTITLFDKTYPLIDTDSNKGQFFYTQDSYEKPIPKSDKKIDFSPFRLDHLNPEETYKLKHLLNKFKDLQYFEGERLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHENEVENQVQEMLEQGLIRESNSPYNSPTWVVPKKPDASGKAKYRVVIDYRKLNEITIPDRFPIPNMDEILGKLGKCQYFTTIDLARGFHQIEMDSESIQKTAFSTKRGHYEYVRMPFGLRNAPATFQRCMNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFEKLSESNLKLQLDKCEFLKKEATFLGHIVTPDGIKPNPLKVEAIASYPIPTKVKEIRAFLGMTGYYRKFIPSYADIAKPMTRYLKKGAKIDINNHEYVEAFEKLKTLITSEPILQLPNFEKKFVLTTDASNLALGAVLSQDNHPISFISRTLNDHELNYSTIEKELLAIVWATKTFRHYLLGRHFQIASDHQPLRWLHNLKEPNAKLQRWRIRLAEFDFHIEYIKGKQNSIADALSRIKVEENHFSEATQHSAVEDNNDLIQLTEKPINVFKKQIIFIKSDQNSVRQTTVFGNSITTIHYNNMTVENAKQFLLDHFISKSIAMYIVSDADFEIILTAYREIINPSYTKVTRSLILLNNVSSYAEFKEIILQAHEKLLHPGIQKMTKLFKENHYFPNSQLLIQNIINECRVCNLAKTEHRNTKMPFKVTPSPGHCRDKFVIDIYSSEGKHYLSCIDIYSKFATLEQIKTKDWIECKNALMRIFNQLGKPTLLKADRDGAFSSLALKQWLESEGVELQLNTAKTGVADVERLHKTINEKIRIINSSKNDEIKLGKMENILYIYNHKTRHDTTGQTPAHIFLYAGQPTLDAQKIKEQKINKLNDDRQEYDIDTKFRKGPLQKGKLENPFKENKNVEQTDPDHYKITNRNRTTNYYKTQFKKRKKLMRSPFHRYLAHSDDTVPVAYHELCPTNSDRRH | |
| FBte0000773 . CDS 5176 6564 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0028828,SPTREMBL:V9H1L4,NCBI_PROTEIN:CAA80825.1;name=Dana\Tom\env;translation=MILSLLLTMSYAQQIQIGGIDTNHGYLLFSSKPIQRPSAFEHHCLTVNLTEINTITTYFGNKIQNSTDTPRIKFLYNKLIKELNGITLHKERRQKRGLFNFVGSAFKFLFGTLDDNDRIQFEEKLNSEAENSIKIHEFNEVMQFVNDGLQRIKKYENNRNSIDTLVYELMQFIEYIEDLEMGMQLSRLGLFNPKLLNYDKLQNVNSENILLTKTSTWINYKNNEILIISHIPINHVLINTIKIIPYPDRNGYQLEYSGSDSYFENDNKIYNQDNKEVNSECIANIIKRRNPTCNFVPALTKEIIKYIEPNVIITWNLTQTTLTQNCQNSNSNIQIKGNKIIRITQCKVKIENIILSENYLHPEIDLTPLYPPLNITKIKILKHNDIIKMISQNNITLYTIIIPAILALVAMILILKYINFNPFIFLYIKLRKQTERNQPQLQENELGENPLPTLYPSMPAQV | |
| FBte0000773 . intron 1277 5158 . + 1 Ontology_term=SO:0000188 | |
| FBte0001189 . SINE-like elements 1 227 . . . ID=FBte0001189;name=Dhyd\Bungy;source=U14600;type=?;subtype=? | |
| FBte0000647 . transposable_element 1 845 . . . ID=FBte0000647;name=Dvir\Dv;source=X03936;type=?;subtype=? | |
| FBte0000647 . direct_repeat 1 58 . + 1 Ontology_term=SO:0000314 | |
| FBte0000647 . direct_repeat 790 845 . + 1 Ontology_term=SO:0000314 | |
| FBte0000588 . LTR_retrotransposon 1 9045 . . . ID=FBte0000588;name=Dbuz\Osvaldo;source=AJ133521;type=?;subtype=? | |
| FBte0000588 . five_prime_LTR 1 1195 . + 1 Ontology_term=SO:0000425 | |
| FBte0000588 . three_prime_LTR 7850 9045 . + 1 Ontology_term=SO:0000426 | |
| FBte0000588 . intron 5624 6439 . + 1 Ontology_term=SO:0000188 | |
| FBte0000588 . CDS 1267 2509 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027838,SPTREMBL:Q9XZR6,NCBI_PROTEIN:CAB39732.1;name=Dbuz\Osvaldo\gag;translation=TMVRAWVYNLKKDDVLRYGDEFGVTLSGTLDVMRRQFGEWVETNEGRIPYSLTVAELARLHGRRPSNSEDVPTVIVGNDQYEEDPNAARQSLPSTSAAARLQQTEQGAWRATSTPQPEIRTRGPSSSEQEYPKVAKHVREWNFRFDGTSKPLEFLEQVEWSADTYGLDLDLIPRAMPELLKGMALKWYVANNRHWRTWGTFVRSFQEFFFAEDYLEDLKDEVKRRKQMVDEPFKIYMVEMQTLMRPLRYGPDHEMKLIYNNSIPDLRAYARPYQFQSLMELMKLADEFEELERDRERLRRLQRPARTRLMAMEEDDGHEEEMLRRGALEESPRPAPRTGATGQRTHIPNPSRACRVCGQEGHRAVRCRNRALDFCWQCGRIGVRTVACCQSGNDQRYPQSRGEREQCQTAPRH | |
| FBte0000588 . CDS 2214 5658 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027837,SPTREMBL:Q9XZR7,NCBI_PROTEIN:CAB39733.1;name=Dbuz\Osvaldo\pol;translation=WPRRGDAAERSPGGESSSCTKDWCHGTKDTHPKSIQSVPGVWPRRTPSCQVPQQGTGLLLAMWTHRRAHRGLLPIGKRPAVPAVQGGAGAMPNSPKTLIGSLHDEGHQLTAIVAIGAEQQKATIDTGASSSFISERLAKRLHGGGVVRATRRRIRLANGSCSEVNSQLDLKIRLGSRQMEVPLLVLPGVIDDLVLGCDFLAGMGTPWNVAAWRSTIEPRNPQRSGRREAKLSVAIASGEIGHETPLDATQVDQKLIHADPEVDAFLRHELEKFQHVKGTTKITEHRITMQDTRPIKQRYFPKNPKMQAEINKQVDELLVKGCIEPSKSPHTRTYSNGQGRKNGKWRLCVDFRQLNSRSIKDAYPLPRVHHILDQLREARYITSLDLKDGYWQIPMEKSSRPLTAFTVPGKGLFQWKVMPFGLHSAPATFQRALDQVIGPDMMPHAFAYLDDIIVIGRTRQEHMDNLREVFRRLRAANLRINIDKCDFFKKELKYLGHKVTENGIRTDPEKVAAIAQLKPPTNVKELRQYVGVASWYRRYVPDFASTVHPLNALLKKGVKWEWTEEHQRAFETVKAKLTESPVLACPDFSKPFCLQTDASNYGLGAILTQTSEEGERVISYASRTLNSAERNYSATEKECLAIIWGIRKLRPYLEGYHFIVITDHMALKWLNSIESPSGRIARWALELQQYDFEVRYRKGKQNVVADALSRQPLEEDACCLAKSRETPDGTACRWLQRLRQDMRKAPQKFADYREEAGNIYRHIPHQAGHEDVAAWKLCVSTDRRKQVLKENHDAVTAGHLGSRKTIARVAARYYWPGMYRDVRNYVQRCEVCQRYKPSQLQAAGQMLTQVPEEPWATVCADFVGPLPRSKHGNTMLLVFIDRFSKWTEMVPLRSANTAALQKAFRERILARFGAPKVLITDNGTQFTSRAFKNFLDELGVRHQLTAPYTPQENPTERANRTVKTMIAQFAGSDQRCWDEALPELTLAVNSSVSASTGYTAAFITQGREPRLPKTMFDAQTLGTGQEAQSPIERAAKMREVLEIVRRNLERAAQDQARITICGGGSGSRLLGTKCGRRNATCPMPRTDLQRSWHRDTEGHIRWSSLYRRSSAGISSDAEKRTRTAHVADLKPWRGETGESQSGAEQAA | |
| FBte0000588 . CDS 5163 5623 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027839,SPTREMBL:Q9XZR8,NCBI_PROTEIN:CAB39734.1;name=Dbuz\Osvaldo\env;translation=LTLAVNSSVSASTGYTAAFITQGREPRLPKTMFDAQTLGTGQEAQSPIERAAKMREVLEIVRRNLERAAQDQARITICGGGSGSRLLGTKCGRRNATCPMPRTDLQRSWHRDTEGHIRWSSLYRRSSAGISSDAEKRTRTAHVADLKPWRGETGGQTRMRDKGSIAAVLDDTVASRPAWKSATAEGVLEQADVHIPFDVDAPTTPAAKRPGLKTRARFETAYYSELCEQRRSSNSTTSWKAHPADPRLLAAIRLERRPSTPCTNQGAGTTSRVRLPPVRLPFHPRRRIRPNLRRHQPYLELEPSSSEESRSPASSSGTERRTSLEGTRDEWPEEVAQLATQLEAKGSSRTARIIWVRGVNTASAGHAWDVASSPSATMLVVVGRRKVWAPATRPVAATGVTGGERGSGKSSCIGQRFRWSYAKTKRVLSLPFLNVTTPLTGLRTTPILTKVQQQPRKVMAWSHPGVLKGIQSPSAVKNITVPAPRDEVCQLKDLAILPAHLRRSHPGAAITRGVFAAAPGVWAEAAAGPSGPGASIRHQLGLEEWKLTLKIRKRKLKKNIIFTYQQRTELPAANGKQLVSSAALLTER | |
| FBte0000588 . CDS 6440 7746 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0027839,SPTREMBL:Q9XZR8,NCBI_PROTEIN:CAB39734.1;name=Dbuz\Osvaldo\env;translation=LTLAVNSSVSASTGYTAAFITQGREPRLPKTMFDAQTLGTGQEAQSPIERAAKMREVLEIVRRNLERAAQDQARITICGGGSGSRLLGTKCGRRNATCPMPRTDLQRSWHRDTEGHIRWSSLYRRSSAGISSDAEKRTRTAHVADLKPWRGETGGQTRMRDKGSIAAVLDDTVASRPAWKSATAEGVLEQADVHIPFDVDAPTTPAAKRPGLKTRARFETAYYSELCEQRRSSNSTTSWKAHPADPRLLAAIRLERRPSTPCTNQGAGTTSRVRLPPVRLPFHPRRRIRPNLRRHQPYLELEPSSSEESRSPASSSGTERRTSLEGTRDEWPEEVAQLATQLEAKGSSRTARIIWVRGVNTASAGHAWDVASSPSATMLVVVGRRKVWAPATRPVAATGVTGGERGSGKSSCIGQRFRWSYAKTKRVLSLPFLNVTTPLTGLRTTPILTKVQQQPRKVMAWSHPGVLKGIQSPSAVKNITVPAPRDEVCQLKDLAILPAHLRRSHPGAAITRGVFAAAPGVWAEAAAGPSGPGASIRHQLGLEEWKLTLKIRKRKLKKNIIFTYQQRTELPAANGKQLVSSAALLTER | |
| FBte0000028 . terminal_inverted_repeat_element 1 979 . . . ID=FBte0000028;name=Dkoe\Gandalf;source=U29466;type=?;subtype=? | |
| FBte0000028 . terminal_inverted_repeat 1 12 . + 1 Ontology_term=SO:0000481 | |
| FBte0000028 . terminal_inverted_repeat 967 979 . + 1 Ontology_term=SO:0000481 | |
| FBte0000102 . terminal_inverted_repeat_element 1 1286 . . . ID=FBte0000102;name=Dmau\mariner;source=M14653;type=?;subtype=? | |
| FBte0000102 . terminal_inverted_repeat 1 28 . + 1 Ontology_term=SO:0000481 | |
| FBte0000102 . terminal_inverted_repeat 1259 1286 . + 1 Ontology_term=SO:0000481 | |
| FBte0000102 . start_codon 172 174 . + 1 Ontology_term=SO:0000318 | |
| FBte0000102 . CDS 172 1209 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0013835,NCBI_PROTEIN:AAA28678.1;name=Dmau\mariner\T;translation=MSSFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKKCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVSPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKRGETVNTARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGKYLE | |
| FBte0000026 . terminal_inverted_repeat_element 1 1773 . . . ID=FBte0000026;name=Dhyd\Minos;source=Z29098;type=?;subtype=? | |
| FBte0000026 . terminal_inverted_repeat 1 253 . + 1 Ontology_term=SO:0000481 | |
| FBte0000026 . terminal_inverted_repeat 1519 1773 . + 1 Ontology_term=SO:0000481 | |
| FBte0000026 . CDS 332 745 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0013814,NCBI_PROTEIN:CAA82359.1;name=Dhyd\Minos\T;translation=MSQYSMQKNFRLLQISRSLATMVRGKPISKEIRVLIRDYFKSGKTLTEISKQLNLPKSSVHGVIQIFKKNGNIENNIANRGRTSAITPRDKRQLAKIVKADRRQSLRNLASKWSQQLAKLSSESGRDKLKSIGYGFYKAKEKPLLTLRQKKKRLQWARERMSWTQRQWDTIIFSDEAKFDVSVGDTRKRVIRKRSETYHKDCLKRTTKFPASTMVWGCMSAKGLGKLHFIEGTVNAEKYINILQDSLLPSIPKLLDCGEFTFQQDGASSHTAKRTKNWLQYNQMEVLDWPSNSPDLSPIENIWWLMKNQLRNEPQRNISDLKIKLQEMWDSISQEHCKNLLSSMPKRVKCVMQAKGDVTQF | |
| FBte0000026 . CDS 806 1477 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0013814,NCBI_PROTEIN:CAA82359.1;name=Dhyd\Minos\T;translation=MSQYSMQKNFRLLQISRSLATMVRGKPISKEIRVLIRDYFKSGKTLTEISKQLNLPKSSVHGVIQIFKKNGNIENNIANRGRTSAITPRDKRQLAKIVKADRRQSLRNLASKWSQQLAKLSSESGRDKLKSIGYGFYKAKEKPLLTLRQKKKRLQWARERMSWTQRQWDTIIFSDEAKFDVSVGDTRKRVIRKRSETYHKDCLKRTTKFPASTMVWGCMSAKGLGKLHFIEGTVNAEKYINILQDSLLPSIPKLLDCGEFTFQQDGASSHTAKRTKNWLQYNQMEVLDWPSNSPDLSPIENIWWLMKNQLRNEPQRNISDLKIKLQEMWDSISQEHCKNLLSSMPKRVKCVMQAKGDVTQF | |
| FBte0001144 . terminal_inverted_repeat_element 1 928 . . . ID=FBte0001144;name=Dfun\Isfun-1;source=AJ309320;type=?;subtype=? | |
| FBte0001144 . terminal_inverted_repeat 1 14 . + 1 Ontology_term=SO:0000481 | |
| FBte0001144 . terminal_inverted_repeat 915 928 . + 1 Ontology_term=SO:0000481 | |
| FBte0000039 . non_LTR_retrotransposon 1 5540 . . . ID=FBte0000039;name=Dsub\bilbo;source=U73803;type=?;subtype=? | |
| FBte0000039 . CDS 464 1865 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,SPTREMBL:O46183,NCBI_PROTEIN:AAB92392.1;translation=RRALPGWTVPLLCSSWEPYGEIIKYCKQNQKRERHSPNACREKSQAGEGSGPKAGPIRSDAGKTCTVKDAGMNPGGSHPKPGMGGKSTPKTDTMVGQLSNIAAAQPSGEAAGEDLPSTSVQAKKYSYAEKRSAGHILRRQNASQEVSPTADWLKKVEWASTVLPNFSVEPQKVAAQQKRQRSQETPGPAAKRSRILPNVSFAQIAKERTLIGVLDKGSAEGKIPRSQWKWVEAALADRCFELLEKDPGPPPVCKDMGWFQGNIKVVACEDERSVKLYKAAVAQIGEVYAGAKLVAVDWSEVPSRPRARIWVPATFKEPERILTMLQRCNPTLPTSDWKVAKVEASKGPTNQAVVILNKESLAPIEAARGELNFGFSSVTMKVYKSDAAAEARSANKPVEQDVASEIEAPEVDPEPEPALESYSSETELLLDFEAMCRDDILDDSDADITVVENVSNEVSEASADKSPPL | |
| FBte0000039 . CDS 1801 3465 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,SPTREMBL:O46184,NCBI_PROTEIN:AAB92393.1;translation=QWWRMFLMKSLRLLQINLHHCKAASAALILRLVASGGDIVLIQEPWVVGGRVCGLATKDYNLIVAQTEGKIRTCILARKHLNIFLLHNFSNGDNTAASLELQGTRLNLVSSYMAHEESDPPSDLVRKIVSDSERSDTSLLIGCDANAHHTQWGSSDTNVRGESLFSFILNSNLFIGNRGNDPTFIIKNRQEVIDLTLLSHKLLDTIKSWRVLEDHSFSDHRYIETTLSLESTIPTSYVNPRKTNWDTYSAKMEELLPPLAPKCPDTQDDFNRLVDNFTEACNKAFMAACPSTKPRGKKKPPWWSKHIDTLRKDCRTLFNRAKSSSEVAHWENYKSKLTLYKKETRRAKRASWHKFCSEIEDTSEAARLRKVLSKTSPSVGYLKRTDGTWTNSSEDSLHILLETHFPGCTTIEPADTPSEGPETSMGHILTKRNISWAVNSFKSYKSPGPDQVIPAQLQKAGDVAINWLQSIFRKILTVGKIPRAWLKAKIVFIPKAGKPSHTTPKDFRPISLSSFLLKTFERLVGLQLRKTIKPQAVRRSTCLPKREIHGNGTP | |
| FBte0000039 . CDS 3386 5413 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,SPTREMBL:O46185,NCBI_PROTEIN:AAB92394.1;translation=GKPLNLRLSGAQHAYRKGKSTETALHEVISAVEKSLHVKEYSLIAFLDIEGAFNNVIPGAITEALTDLGVDRHLVMLIDQLLTCRTVTSSMGSSTQSRYVNRGTPQGGVLSPLLWNIAVNKILCDLEGEGCKVVAYADDVAIIFSGKFPQTLCELMTAKLARLSEWTKSRGLGINPSKTELVLFTNKYKIPPLNPPILNGCRLSFSDSASYLGLVIDKKLSWNLSIKDRVKKATIALYTCKKAIGLKWGMNPRIVQWIYLAIVRPILLYGVTVWWTALSKGTITKQLSKVQRTAALSISGALSTTPTDALNAILCLQSPELAGKEQAEMAAIRLRDSDQWVSQRTGHASILNGNNIVPAKTDYCVPREYTDTPFETIIPHRNDWLEGPPGPKEAIQIFTDGSKLDNKVGGGIYSELLNISYSFRLPDHCSVFQAEVIAIKEALSCLQELTPEATYINIYSDSQAAIKSLNAITTSSATVANCRKSLHEMAYQFVISLIWVPGHQDIEGNCIADELARAGTTIPLLNDKEDIRMPMATCKLRIKEHFKKLTNDRWQTVPLCRITRQTWPNINRKRTDELCKLSRSRCSSVIRSLTGHWLIGTHANRLGAPYNDFCRSCRDEDEEETVEHLFCSCPALSRRRLQYLGSPFLNDISDMSTISPRRIAGFIRASGWDNG | |
| FBte0000284 . non_LTR_retrotransposon 1 7779 . . . ID=FBte0000284;name=Dsil\Loa;source=X60177;type=?;subtype=? | |
| FBte0000284 . CDS 689 1816 . + 1 Ontology_term=SO:0000316 | |
| FBte0000284 . CDS 1786 7716 . + 1 Ontology_term=SO:0000316 | |
| FBte0000190 . terminal_inverted_repeat_element 1 1658 . . . ID=FBte0000190;name=Dhet\Uhu;source=X63028;type=?;subtype=? | |
| FBte0000190 . terminal_inverted_repeat 1 50 . + 1 Ontology_term=SO:0000481 | |
| FBte0000190 . terminal_inverted_repeat 1609 1658 . + 1 Ontology_term=SO:0000481 | |
| FBte0000190 . TATA_box 293 296 . + 1 Ontology_term=SO:0000174 | |
| FBte0000190 . CDS 366 1121 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044280,SPTREMBL:Q02881,NCBI_PROTEIN:CAA44763.1;name=Dhet\Uhu\T;translation=MGKRTTIEQRNLILEHFKIGYSYRQIAKMVNLSTTTVFNIIRRFVDENRIEDKGRKAPNKIFTEQEKRRIIRKIRENPKLSAPKLTQQVQDEMGKKCSVQTVRRVLHNHDFNAQVPRKKPFISTKNKGTRMTFAKTHLDKDLEFWNTVIFEDESKFNIFDSDGRNYVWRQSNTELNPKHLKATVKHGGGSVMVWACISAAGVGNLVCIETTTDRNVDLRILKENLLQSAEKLGIRRTFRFYQDNDQDNNQA | |
| FBte0000536 . LTR_retrotransposon 1 6644 . . . ID=FBte0000536;name=Dsim\ninja;source=D83207;type=?;subtype=? | |
| FBte0000536 . five_prime_LTR 1 316 . + 1 Ontology_term=SO:0000425 | |
| FBte0000536 . three_prime_LTR 6329 6644 . + 1 Ontology_term=SO:0000426 | |
| FBte0000536 . transcription_start_site 183 188 . + 1 Ontology_term=SO:0000315 | |
| FBte0000536 . primer_binding_site 323 338 . + 1 Ontology_term=SO:0005850 | |
| FBte0000536 . CDS 411 4493 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044186,SPTREMBL:O02006,NCBI_PROTEIN:BAA19771.1;name=Dsim\ninja\pol;translation=RFRRPARICVSAASATYRQRSRSQRQWRAVSDIEGRSLRRTPVRTSRSQRQGDARSVICGDRSQRSEGVRDAILEAQRRHHLELGKMQHSPRKSARLNGGEATPITTASQQPASSGAGTRTRVNITAASIPCPATTVTTVASQPRSTAVTAASSVPEVNQPLVLELMERIAALERELEKARSLESVSTANCAPIAVGPSAVGANSGASGRPPFWSGQPIPTSNGEALHNGVGSVPYNGDGASGAACTLPPSSSGPPLLTTSNYFVEPLCATGTAQPAHGLVLPGVSIHNAATASPLVGSYAATTPSGIQGAYGPRKLPDLPIFGGQPEEWPIFSCAFVETTRAYNCTDLENNQRLLKALKDEAREAVKALLIHPGNVSAVMEQLRFRFGRPEQLIRSQLNNVREVQPISEHNLAKIIPFATRVSNLAAFLQSAKAEQHLGNPTLMEELVAKLPTSKRVDWARHAATIAPFPTVVHFSAWLQEYANVVCTVLDVEGKEPRRRLLHASVDHNECDQQDDRHGGCSICGGQHGILNCRKFIAASPQERWSNVKRHRLCFNCLRSGHTARSCYTQGECQINGCRREHHRLLHGADEERRPLQRGGFRRHEGNQQPTVSRRSPARRPSLRDGHKDQERNRQPAVPSNSLERGAPREAGAPMQRNLSCVDAEGGRLLFRILPVTLYGAGRKVDTYALLDEGSSVTMIDDELRRDLGVQGERRQLNIKWFGGKATREPTNVVSLKISGVGKPTRHVLRNVYAVSSLSLPMQTLSRRDVQGVHRDARLPMKPYSNVVPKLLIGLDHGHLGLPLRTRRFAREGPYAAVTELGWVVFGPVSGQPTTPSPRSSLLAVSVDDAMEKMVEDYFDMENFGVKTAPPVAASDDVRAQRILEDTTVKVGRRYQTGLLWKDDHVVLPPSYEMAYRRLVNVEKKMKRNKPLAQEYDRIIKDYVSKGYARRLQPEEVAVRSDRLWYLPHFSVENPNKPGKVRLVFDAAAKVGGTSLNSELDKGPQHYKPLPAVLFHFREGAVGVCGDIKEMFHQVLIRPEDRCSQRFLWRDGDDERDPDVYEMNVMTFGAACSPSAAHYVKTMNALKYRDSDPRAVKAITDYHYVDDYVDSFATESEAISVSTRVKEIHKDAGFELCQFSSSSPTVETALGPGRVKSVGWGEAEEKILGMRWQVATDDFRFNVEYHRVPSSVLSGDRVPTKREYLSLVMSTFDPLGFLCCLMVTAKLLLREIWRQKIQWDEPLPEELSKAFAIWRKEMDAVGQFRCPRHYFGRGAVRAVELHVFVDASQAAFAAVAYWRVTYEDDDVQVSFVSAKTKCAPMRTMTIPRLELQAAVLGTRLMNTVKQEHSVVITDLLLWT | |
| FBte0000536 . CDS 4471 6237 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044186,SPTREMBL:O02007,NCBI_PROTEIN:BAA19772.1;name=Dsim\ninja\pol;translation=RTCCYGLDSKTVLRWIGSTHRRYKQFVGNRVAEILESSKVSQWRWVPTADNAADDATRSQKGVDLSQESRWLRGPAFLRQPAASWPGPEEGTERVPDAPDEEEMPSEFALVAADDFVIPFQRFSSFSRLVRTTAWVLRFARWCRKQRNELEEYGLTAAECKAAENLLVRQAQLESFPDEMRSAETGQDVGGSSDIRGLVPYLDEDGILRAYGRIDAALCMPYSARRPVLLSHRHSLTELIVRDFHDRMKHQNVDATIAEIRTKFWVTKMRRVMRKSHLIVQRVQVAATATDAADNGTPSGRQTGCGWMAIQIHRTGLLWATAGDCVPSQGEALGRLVYVFDDKGDSPGVAHDLSTDSCIIAIRNFVCRRGPVYRLRNDNGKNFVGADREARRFGDVFEMEKLQSELSSRSIEWVFNCPANPSEGGVWERMVQCVKRVLRHTLKEVAPRDHVLESFLIEAENIVNSRPLTHLPVDADQEAPLTPNDLLKGVANLPDTPGLDAECPRRVLRESSGGLLACSETVSGGGGSWSTCLRLCAARSGAAERSPSTRVIWSSSAILPWPDESGARASWRRSTAELMESSDALRCA | |
| FBte0000536 . primer_binding_site 6318 6327 . + 1 Ontology_term=SO:0005850 | |
| FBte0000536 . polyA_signal_sequence 6544 6549 . + 1 Ontology_term=SO:0000551 | |
| FBte0000017 . non_LTR_retrotransposon 1 691 . . . ID=FBte0000017;name=Dvir\Helena;source=U26847;type=?;subtype=? | |
| FBte0000017 . CDS 3 540 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0026901,REMTREMBL:CAB35346;name=Dvir\Helena\RTase | |
| FBte0000158 . non_LTR_retrotransposon 1 4158 . . . ID=FBte0000158;name=Dvir\Penelope;source=U49102;type=?;subtype=? | |
| FBte0000158 . start_codon 617 619 . + 1 Ontology_term=SO:0000318 | |
| FBte0000158 . CDS 617 3190 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044148,SPTREMBL:Q24736,NCBI_PROTEIN:AAA92124.2;name=Dvir\Penelope\ORF1;translation=MERSPEPSININGRHAVCTATNMSYAKIKTKYKDSKRTINKFQLTLVKLTKLKSSLKFLLKCRKSNLIPNFIKNLTQHLTILTTDNKTHPDITRTLTRHTHFYHTKILNLLIKHKHNLLQEQTKHMEKAKTNIEQLMTTDDAKAFFESERNIENKITTTLKKRQETKHDKLRDQRNLALADNNTQREWFVNKTKIEFPPNVVALLAKGPKFALPISKRDFPLLKYIADGEELVQTIKEKETQESARTKFSLLVKEHKTKNNQNSRDRAILDTVEQTRKLLKENINIKILSSDKGNKTVAMDEDEYKNKMTNILDDLCAYRTLRLDPTSRLQTKNNTFVAQLFKMGLISKDERNKMTTTTAVPPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIIQILKNLTMDSRYNIKNAVDFKDRVNNSQIREEETLVSFDVVSLFPSIPIELALDTIRQKWTKLEEHTNIPKQLFMDIVRFCIEENRYFKYEDKIYTQLKGMPMGSPASPVIADILMEELLDKITDKLKIKPRLLTKYVDDLFAITNKIDVENILKELNSFHKQIKFTMELEKDGKLPFLDSIVSRMDNTLKIKWYRKPIASGRILNFNSNHPKSMIINTALGCMNRMMKISDTIYHKEIEHEIKELLTKNDFPPNIIKTLLKRRQIERKKPTEPAKIYKSLIYVPRLSERLTNSDCYNKQDIKVAHKPTNTLQKFFNKIKSKIPMIEKSNVVYQIPCGGDNNNKCNSVYIGTTKSKLKTRISQHKSDFKLRHQNNIQKTALMTHCIRSNHTPNFDETTILQQEQHYNKRHTLEMLHIINTPTYKRLNYKTDTENCAHLYRHLLNSQTTSVTISTSKSADV | |
| FBte0000322 . LTR_retrotransposon 1 10653 . . . ID=FBte0000322;name=Dvir\Ulysses;source=X56645;type=?;subtype=? | |
| FBte0000322 . five_prime_LTR 1 2136 . + 1 Ontology_term=SO:0000425 | |
| FBte0000322 . three_prime_LTR 8518 10653 . + 1 Ontology_term=SO:0000426 | |
| FBte0000322 . polyA_signal_sequence 536 541 . + 1 Ontology_term=SO:0000551 | |
| FBte0000322 . polyA_signal_sequence 570 575 . + 1 Ontology_term=SO:0000551 | |
| FBte0000322 . TATA_box 580 584 . + 1 Ontology_term=SO:0000174 | |
| FBte0000322 . TATA_box 612 616 . + 1 Ontology_term=SO:0000174 | |
| FBte0000322 . polyA_signal_sequence 615 620 . + 1 Ontology_term=SO:0000551 | |
| FBte0000322 . polyA_signal_sequence 1138 1143 . + 1 Ontology_term=SO:0000551 | |
| FBte0000322 . primer_binding_site 2140 2150 . + 1 Ontology_term=SO:0005850;bound_moiety=tRNA-lys | |
| FBte0000322 . CDS 3422 4870 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044141,NCBI_PROTEIN:CAA39966.1;name=Dvir\Ulysses\ORF2;translation=MGRRSATAEPSWRAGANANEFPGSLMRETDPCKGGSPGRLGGKNWRNSLDLHGTWSSQKPRKTQCSNPAANAAIAQAHQRISACSAIWHQRVHPRGDASWLHGNDEGHPLMCLGRQGAKPAETNTAPKPPRTCRAGTANRRHPERTEVFQREHSTTVPPKPRRQAHRAEYSSSSPVYVADAQSRNWRNPNNRHFRVEDRRADDFQPEEAYANVRETAYMKLERWNVKFDGEDAMNSVEDFVFRLEFLQRQYQCPWKEVLRGFHLLLTGRAREWYWMHVRHSRVDSWMQLRHALLDRFRGYQTEHEVMQELLQREQQASEGVDDYIHHMRQLAARFQKPLRDRELVRIIKRGLKESLAKYIYAMDVLTVDELRQECLEVERHMGRRSRTGYLQPSRCPQGTRPVVHEVEVPPHLTETPPGELEEAFVRTRNSSELYAGTRDSSTTSLETACPRSGKYSAIGVESRTRSARSVKTVRETPEGAR | |
| FBte0000322 . CDS 4836 8027 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044142,NCBI_PROTEIN:CAA39967.1;name=Dvir\Ulysses\ORF1;translation=KLSGKPQRERGDGGTDAFRDGDRGKAGEGHLPEPIIIGKETEIWNKDQDKANYNNSISKGGTLRGLPYEERVRAYMSARNRIFGERQLEGMTLATRRMVKARARFRRRRITRRQVVEAVRREESIDPRVFAEVEVAGAKMKGLLDTGASVSLLGQGCRELVEKLGWEARPYESMVRTACMGANRPILGRVVLPVKYGIERLDIVFYMCPDLRQELYLGIDFWRAFEIAPELLGPARKSETPPEASEVTVANPEVAYYRDDDDCVTDPEMWDLDNDQRSQLESVKRRFLQFEKDGLGKTHLLQHRIQLIEGAEPVKDRLNPLSPAKQEIVWAEVDKMLKLGIIEESDSPWSNRTTVVMRPGKNRFCLDARKLNSVTVKDAYPLPCIEGILSRSTRLILSLASTLSSRSGNRDGGEEQGVYGVYCTRRPLYQFRHMPFGLCNAAQHFEAHDKVIPANLRSNVFVYLDDLLIISADFPTHLKYLELVAECLRNANLTIGMAKSKFLFRNLNYLGFIQLRRRTWRMDPGRVEAIRNIPNPRTVKELRSFLGTAGWYRRFIKNFAEISVPLTDALKKRTGRFVLSDEAIEAIESLKLALTTAPVLVHADFRRPFFIQCDASHYGVGAVLFQLDDEQQERPIAFFSAKLNKHQINYSVTEKECLAAKLAIHRFRPYVEMMPFTVITDHASLQWLMSLKDLSGRLARWSLELQAFPFSMQYRKGADNVCRHIVRSVEEVELTPEDLLGFQTPEFESPNIEELIREVMSQQGKFPDLSSGRTDFSSRGTVHESLEDEVEGTSWKLWVPESLTAGLIQQATRRTRRSAHGGMRKTLHALARQYYWPNMAIQVRDYVRKCDTCKETKAQNYRMQVGIGEEVRTDRPFQKLYIDFLGKYPRSKRGHAWIFVVVDHFSKFTFLKAMREATAADVVNFLVHEVFFKFGVPEVIHSDNGRQFVSKSFDAMVQAFGITHLRTPVYSPQSNAAERVNRTVLSAIRTYLGQDHREWDAYLPEVEVAIRNAVHSGYGSHSVLRGLWTADVPEWFQLQTGQEAVDHWPTTVFLTLTQRTDWL | |
| FBte0000322 . polyA_signal_sequence 9053 9058 . + 1 Ontology_term=SO:0000551 | |
| FBte0000322 . polyA_signal_sequence 9087 9092 . + 1 Ontology_term=SO:0000551 | |
| FBte0000322 . TATA_box 9095 9100 . + 1 Ontology_term=SO:0000174 | |
| FBte0000322 . polyA_signal_sequence 9101 9106 . + 1 Ontology_term=SO:0000551 | |
| FBte0000322 . TATA_box 9129 9134 . + 1 Ontology_term=SO:0000174 | |
| FBte0000032 . LTR_retrotransposon 1 6868 . . . ID=FBte0000032;name=Dvir\Tv1;source=AF056940;type=?;subtype=? | |
| FBte0000032 . five_prime_LTR 1 452 . + 1 Ontology_term=SO:0000425 | |
| FBte0000032 . three_prime_LTR 6416 6868 . + 1 Ontology_term=SO:0000426 | |
| FBte0000032 . start_codon 857 859 . + 1 Ontology_term=SO:0000318 | |
| FBte0000032 . CDS 857 1642 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0028756,SPTREMBL:O76325,NCBI_PROTEIN:AAC33317.1;name=Dvir\Tv1\gag;translation=MTMELSEQHLNQALSQLRQVPSFDGSTDQLNAFIKRIDYILHLYPTRDVRQHSILYGAIELQVTGDAQRISQRTAANTWQELRNALIEEYKVQTPFEELLRRLYNTNYQGNVRKFIEELENKSFVILNKLALENIPSNTTLYTNAMNNTIKDVITKKLPDRLFMMLARHDITSTQKLKQVAQREGLYENSVTEKPKNNNVQGNPNNNRRNMGNYQQNANPTTISSGYSNTNQSYHAQNKQHNKSEDNQKAHHEFPTEIKSR | |
| FBte0000032 . CDS 1416 4982 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0028755,SPTREMBL:O76326,NCBI_PROTEIN:AAC33318.1;name=Dvir\Tv1\pol;translation=MKIVLLKNLKIIMFREIQITIVGTWEIISKMLTQPPFQVVIPTRIRVITHKINSIISPKTIRKLTTSFQQKLSQGRYQNPLNYQISPIHAECTKPSRLTSRDSNSGQIRIWDNIGKFLFSKPREPNRNKSIHKNWIMELTKFLKCVIDTGSTINLMKTNRLNFPVYNETLKVHTINGVIELKQSIRLGASKICPSKQKFYIHDFSEHYDVLIGREYLEACQAKIDYAQGSVTLGEFNFCFRYNDEEVEEDMTAQECLDPPSTEDRPFNFAINNELIENNEFRLEHLNSEEKEKIKKVLHEFVISSYHEGDNLTFTSYNLNTKFLTKHEDPIYKRSHTNILQLSNEEVIPFSDLIKPIPNGLPVIIVPKRNDAFGKPKFRLVIDYRHFNELTINDKYPIPIMDEILDKLGKCQYFTTIDLAKGFHQIQMDPGSIPKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIFKDCLVHLDDIIIFSTSLEEHILSLQKVFKKLREANLKLQLDKCEFMRKETEFLGHIITTEGIKPNPNKIQAIVKFPIPKTPKEIKSFLGLCGFYRKFIPNFANIVKPLTLKLKGSKINIKDRDYELAFEKLKVLITSDPILIYPNFEKPFSLTTDASNMAIGAVLSQEHKPICYASRTLNEHELNYSTIEKELLAIVWATKYFRSYLFGRQFQILSDHRPLVWLNNMKEPNMKLQRWKIKLNEFDFQIKYVPGKENYVADALSRIQLNENFLGEDTISTRATIHSAQEDNSNHLQITERPLNYYNRQIEFEKGTENETKVTNYFHKTNIKITYKDMTNTHAKELIKEYLCTKKSVLYFHNEADFPIFQEAYLEIISPNNSTKAMKTSTKLIDLQTYAEFKELILKKHKELLHPGIEKTINWFKETHYFPDYQNLINECETCNIAKTEHRDTKLTFEITPEIANIREKYVMDFYIVGDKQFLSCIDIYSKFASLIEIKSRDWLETKRAILQVFNQMGKPIEIKADKDSAFMCTALQLWLKSEAVNINITTSKNGISDVERFHKTVNEKLRIINSDSDVENKLTKFETILYTYNHKTKHKTTNRTPADIFIYAGTPEYDTQANKEKLINNLNKKRTNYEIDTRYKHSPLVKSKTTTPFKKTGELRQIDDKHFEETNRGRKITHYKTKFKKKKKTNQSKYNNYRSTTDSDQNIQAPA | |
| FBte0000032 . CDS 5005 5292 . - 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044143,SPTREMBL:O76327,NCBI_PROTEIN:AAC33320.1;name=Dvir\Tv1\epigene;translation=MLTKPLLLRLAIFKPFISLFNFSTRYSICIRLLNSLLCSIKLLKVSSVFVILTVKQWEFVICRNVYGSCFKYEISVMGFDRINFNTLCIYIVYSY | |
| FBte0000032 . start_codon 5445 5447 . + 1 Ontology_term=SO:0000318 | |
| FBte0000032 . CDS 5445 6110 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0028757,SPTREMBL:O76328,NCBI_PROTEIN:AAC33319.1;name=Dvir\Tv1\env;translation=MNELDQEKQKGKKLDILIFNLQHFTEYIEDIEMGMQLTRLGIFNPKLLKHDYLLHVNSEKLLNTKTSTWFKSDTNEILIISHIPREIIKSPVFEIIPYPDENNNILTEIAHEKYFTQDKKVYSRETKKLINNKCLTGILNQITSECSYTKILQNFQINYIEPNIILTWNLPKTILNHNCINNEITIEGNNIIKIFNCSLQINEISISNNMLDYTSKHLRRQ | |
| FBte0000942 . LTR_retrotransposon 1 2485 . . . ID=FBte0000942;name=Dvir\Tel;source=AF009439;type=?;subtype=? | |
| FBte0000942 . five_prime_LTR 1 431 . + 1 Ontology_term=SO:0000425 | |
| FBte0000942 . CDS 720 2485 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044144,SPTREMBL:O16111,NCBI_PROTEIN:AAB66824.1;name=Dvir\Tel\Tel1;translation=MFDEGASANGNDEATSASQVAVGTQAAVFKIKIKNLTDRLNRLSSELDPARLRDVDDYELQDYISMASDLQAKFEIVCDGLLEVDHASVDEDLQTSFESTIRQLRLSLQRERGNRSKVQQIPHCSTFNSAAADDSRSTFVVPNHSRLPQLKLPEFSGGYTEWADFSNLFTTVIDKDPYLTNIEKLQHLRSCLKGTALDTIRSLEISNANYAAALELLDKRFNNKRLIFQAHISEILGLRKVDKGATAQLREFSDKLNSHLRALKSMGSVEQIAGCVIVHTLLQKLDSVTQASWEDDAPLDVIPSCERFTTFIERRCQRLENADHATAMYTPSSQVGQNNSSRRTFVVTRNGTSACVFCEVAGHSIYKCLQFANLSPLLRLHEAKRLALCLNCLQRGHQLRVCGSSACRVCGSKHHSLLHLGNTSSHIAASSPNNAQDTETYSSSQNTLAALLSSPLTTAQHLKHDVVLLATAVINVKNRAGSLVPCRALLDSGSQLHIITSRLAHQLQLRKFKSTAIVSGIGDAAFASDGFSVNINVKSRVSEYSTCIPALIAPSITDNQPGFTLDPASWNIPSNIQLADPEFEYQAY | |
| FBte0000464 . LTR_retrotransposon 1 3452 . . . ID=FBte0000464;name=Dmir\TRAM;source=Y08905;type=?;subtype=? | |
| FBte0000464 . five_prime_LTR 1 372 . + 1 Ontology_term=SO:0000425 | |
| FBte0000464 . three_prime_LTR 3080 3452 . + 1 Ontology_term=SO:0000426 | |
| FBte0000176 . LTR_retrotransposon 1 3111 . . . ID=FBte0000176;name=Dmir\TRIM;source=X59239;type=?;subtype=? | |
| FBte0000176 . five_prime_LTR 1 792 . + 1 Ontology_term=SO:0000425 | |
| FBte0000176 . three_prime_LTR 3062 3111 . + 1 Ontology_term=SO:0000426 | |
| FBte0000176 . polyA_signal_sequence 308 313 . + 1 Ontology_term=SO:0000551 | |
| FBte0000176 . TATA_box 740 745 . + 1 Ontology_term=SO:0000174 | |
| FBte0000176 . primer_binding_site 795 811 . + 1 Ontology_term=SO:0005850 | |
| FBte0000176 . CDS 768 1286 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0063547,NCBI_PROTEIN:CAA41923.1;name=Dmir\TRIM\ORF0;translation=FTRESSPDTWLQTKVVFIPKAGKPSHTAPKDFRPISLSSFLLKAMELLLGLHLTACIPSSLISDSQHAYRKGRSTETALHSITSIIEASLNFKEYTLVAFLDIKGAFNNILPTAITGALTDLGVDSRTVSLIDQMLQCRTVEASLGTLTCTRFVSRGTPQGESSRPSYGTWQ | |
| FBte0000176 . CDS 1193 1444 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0063546,NCBI_PROTEIN:CAA41924.1;name=Dmir\TRIM\ORF1;translation=GITGDANVYQICQQRHTAGRVLSPLLWNVAVNTLLREIEGGGCRVVAYADDVAIAFSGKFPQTLCECITSTLTKMSNGQTNAG | |
| FBte0000176 . CDS 1390 2955 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0063545,NCBI_PROTEIN:CAA41925.1;name=Dmir\TRIM\ORF2;translation=VHYKYSHENVEWADKCGLGVNPSKTELVLFTRKYKVPVLIPPRLCGETLVFSNNAKYLGLILDRKLDWKLSIEDRVKKATVALYTCRKAIGLKWGMTPYIVRWLYTAIIRPIMLYGVVVWWPALDRRTCLNKLSRVQRMAELCITGGLRTTPGEALDTVLDLLPVDLMGKKVATLAALRMREARLWKASAVGHSGILMRLPQLPERTDYCIPSDHLSTPFQVSIPSREDWEMGEPGPANAVHFYTDGSKLDGRVGGGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIVSKLRLDTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSLHEIAEQLDLFLIWVPGHRDIEGNDAADELARQGTTIPLLSEREQVAMPLATCRLLTHELFEQNANRRWQQTVSCKVSRLICSYRSKKRSAELYRLSRAQCFAVTRAITGHWQIGTHASRLSIPHNDFCRSCRDEEEEESVLHFFCHCPALGNRRLRILGAAFLADISGLSEIKPGTLSKYIQATGWDCP | |
| FBte0000176 . CDS 2624 3103 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0063544,NCBI_PROTEIN:CAA41926.1;name=Dmir\TRIM\ORF3;translation=YAHIDRRSAQQSCTDSAEHSVLQLLEPLRDTGRSALMPPDCQSLITTSAGVVATRRRRNRSSTSSAIAQPLEIVVFVFSGPLSLRTFRACPKSNQGPCPNTSKPPDGTALNPAVVCSHGSGNEKGHMPMRQHNGPSIGPSELGGGRLLSPPSAYRLNLT | |
| FBte0000176 . RR_tract 3050 3059 . + 1 Ontology_term=SO:0000435 | |
| FBte0000415 . non_LTR_retrotransposon 1 1730 . . . ID=FBte0000415;name=Dvir\Paris;source=Z49253;type=?;subtype=? | |
| FBte0000415 . terminal_inverted_repeat 1 242 . + 1 Ontology_term=SO:0000481 | |
| FBte0000415 . terminal_inverted_repeat 1489 1730 . + 1 Ontology_term=SO:0000481 | |
| FBte0000415 . start_codon 394 396 . + 1 Ontology_term=SO:0000318 | |
| FBte0000415 . CDS 394 1440 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:CAA89219.1,FLYBASE:FBgn0044149,SPTREMBL:Q27281;name=Dvir\Paris\T;translation=MPGQRINENVIQLVYFHYHKGKCAKELAEMFSIKLRTIYNIINRAEKENRLELKHSGGRPAKLSRRDHSKILKQINENPQTSLRQLALDLKNDCNKTVSHETVRKVLKMHKYSSQIARKKPLLSAVNIQRRLNFSITNVNKPAEYWDDVIFCDETKIMLYYHDGPSKVWRKPNTALEQKNIIPTVKFGKLSVMVWGCISSKGVGELRIFNDVMTKEFYLDILKNELSRSAIKFGFVDPQNPSKQRYKLYQDNDPKHKSFLCRTWLLYNCSKVIDTPAQSPDLNPIENLWAFLKKRVGKRSPTNKNALIKAIQEEWIKIPEIYDLHNLIQSMSRRLRAVMDANGQYTKY | |
| FBte0000948 . non_LTR_retrotransposon 1 4952 . . . ID=FBte0000948;name=Dmir\spock;source=AY144571;type=?;subtype=? | |
| FBte0000599 . non_LTR_retrotransposon 1 4174 . . . ID=FBte0000599;name=Dmir\worf;source=AY144572;type=?;subtype=? | |
| FBte0000353 . mite 1 884 . . . ID=FBte0000353;name=Dwil\Vege;source=AF518730;type=?;subtype=? | |
| FBte0000353 . terminal_inverted_repeat 1 12 . + 1 Ontology_term=SO:0000481 | |
| FBte0000353 . terminal_inverted_repeat 873 884 . + 1 Ontology_term=SO:0000481 | |
| FBte0000892 . mite 1 610 . . . ID=FBte0000892;name=Dwil\Mar;source=AF518731;type=?;subtype=? | |
| FBte0000892 . terminal_inverted_repeat 1 11 . + 1 Ontology_term=SO:0000481 | |
| FBte0000892 . terminal_inverted_repeat 600 610 . + 1 Ontology_term=SO:0000481 | |
| FBte0000984 . non_LTR_retrotransposon 1 1317 . . . ID=FBte0000984;name=Dmel\Helena;source=?;type=LINE;subtype=Jockey | |
| FBte0000823 . terminal_inverted_repeat_element 1 3329 . . . ID=FBte0000823;name=Damb\P-element;source=AF012414;type=?;subtype=? | |
| FBte0001485 . terminal_inverted_repeat_element 1 2986 . . . ID=FBte0001485;name=Dbif\P-element_O;source=X71634;type=?;subtype=? | |
| FBte0001485 . CDS 173 453 . + 1 Ontology_term=SO:0000316 | |
| FBte0001485 . CDS 542 1221 . + 1 Ontology_term=SO:0000316 | |
| FBte0001485 . CDS 1288 2013 . + 1 Ontology_term=SO:0000316 | |
| FBte0001485 . CDS 2198 2781 . + 1 Ontology_term=SO:0000316 | |
| FBte0001486 . terminal_inverted_repeat_element 1 2935 . . . ID=FBte0001486;name=Dbif\P-element_M;source=X60990;type=?;subtype=? | |
| FBte0001486 . terminal_inverted_repeat 1 31 . + 1 Ontology_term=SO:0000481 | |
| FBte0001486 . terminal_inverted_repeat 54 64 . + 1 Ontology_term=SO:0000481 | |
| FBte0001486 . start_codon 155 157 . + 1 Ontology_term=SO:0000318 | |
| FBte0001486 . CDS 155 447 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044301,NCBI_PROTEIN:CAA43305.1;name=Dbif\P-element\T;translation=MKYCKFCCKVVTAGVSLVHVPKCSVKRKLWEESLGCSLGGNSQICATHFNDSQWKSTENKGQANKRRRLNKDAIPTKEIEPEPENVKEGYTSSSTQTECCSLSKENKSLRQTIRAMEYDLQRLRSQLEESRQLEESLGKIFTETQIKILKNGGKRSTFTSDDISAAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVEIKTGCLDVAIDLMENDAMDEADKLCVVAFDEMKVAAAFEYDSSADVIYEPSNYVQLAIVRGLKKSWKQPIFFDFSTRMDADTLNNIIRKLHTKGYPVVAIVSDLGSGNQRLWSELGVSESKTWFSHPTDEHLKIFVFSDTPHLIKLVRNHYVDSGLTLNGKKLTKTTVQQTLNHCTKSDVSILFKISENHLNVRSLDKQKVKLATQLFSNTTASSIRRCYSLGYDVENACETSDLFKLLNDWFDVFNSKLSTANCIQSTQPYGKQLEFQRDVLEKMTKIMSSEILGKSQKLPFQKGIIVNNASLDGLFLYLKDKYNMEYLLTSRLNQDIVENFFGAMRSRGGQFDHPTPLQFKYRLRKYLIAKNTELLRNTGNVEEDNTDSWLNLDFSSKNSENWENNPEDVEPEDDEQTIANNIPADIEMDELTEDAIEYVAGYVIKRLRTSDCVEQSSTFTYVDEVSHGGLIKPSDQFKNKLKELEKIFLHYTKENFKITKNLKEKLIIAAQNVELDKFVISFYFKIRIYFRVKYLNKKICIKNQKQRLLGNSKLLKMKL | |
| FBte0001486 . CDS 512 1179 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044301,NCBI_PROTEIN:CAA43305.1;name=Dbif\P-element\T;translation=MKYCKFCCKVVTAGVSLVHVPKCSVKRKLWEESLGCSLGGNSQICATHFNDSQWKSTENKGQANKRRRLNKDAIPTKEIEPEPENVKEGYTSSSTQTECCSLSKENKSLRQTIRAMEYDLQRLRSQLEESRQLEESLGKIFTETQIKILKNGGKRSTFTSDDISAAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVEIKTGCLDVAIDLMENDAMDEADKLCVVAFDEMKVAAAFEYDSSADVIYEPSNYVQLAIVRGLKKSWKQPIFFDFSTRMDADTLNNIIRKLHTKGYPVVAIVSDLGSGNQRLWSELGVSESKTWFSHPTDEHLKIFVFSDTPHLIKLVRNHYVDSGLTLNGKKLTKTTVQQTLNHCTKSDVSILFKISENHLNVRSLDKQKVKLATQLFSNTTASSIRRCYSLGYDVENACETSDLFKLLNDWFDVFNSKLSTANCIQSTQPYGKQLEFQRDVLEKMTKIMSSEILGKSQKLPFQKGIIVNNASLDGLFLYLKDKYNMEYLLTSRLNQDIVENFFGAMRSRGGQFDHPTPLQFKYRLRKYLIAKNTELLRNTGNVEEDNTDSWLNLDFSSKNSENWENNPEDVEPEDDEQTIANNIPADIEMDELTEDAIEYVAGYVIKRLRTSDCVEQSSTFTYVDEVSHGGLIKPSDQFKNKLKELEKIFLHYTKENFKITKNLKEKLIIAAQNVELDKFVISFYFKIRIYFRVKYLNKKICIKNQKQRLLGNSKLLKMKL | |
| FBte0001486 . CDS 1242 1967 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044301,NCBI_PROTEIN:CAA43305.1;name=Dbif\P-element\T;translation=MKYCKFCCKVVTAGVSLVHVPKCSVKRKLWEESLGCSLGGNSQICATHFNDSQWKSTENKGQANKRRRLNKDAIPTKEIEPEPENVKEGYTSSSTQTECCSLSKENKSLRQTIRAMEYDLQRLRSQLEESRQLEESLGKIFTETQIKILKNGGKRSTFTSDDISAAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVEIKTGCLDVAIDLMENDAMDEADKLCVVAFDEMKVAAAFEYDSSADVIYEPSNYVQLAIVRGLKKSWKQPIFFDFSTRMDADTLNNIIRKLHTKGYPVVAIVSDLGSGNQRLWSELGVSESKTWFSHPTDEHLKIFVFSDTPHLIKLVRNHYVDSGLTLNGKKLTKTTVQQTLNHCTKSDVSILFKISENHLNVRSLDKQKVKLATQLFSNTTASSIRRCYSLGYDVENACETSDLFKLLNDWFDVFNSKLSTANCIQSTQPYGKQLEFQRDVLEKMTKIMSSEILGKSQKLPFQKGIIVNNASLDGLFLYLKDKYNMEYLLTSRLNQDIVENFFGAMRSRGGQFDHPTPLQFKYRLRKYLIAKNTELLRNTGNVEEDNTDSWLNLDFSSKNSENWENNPEDVEPEDDEQTIANNIPADIEMDELTEDAIEYVAGYVIKRLRTSDCVEQSSTFTYVDEVSHGGLIKPSDQFKNKLKELEKIFLHYTKENFKITKNLKEKLIIAAQNVELDKFVISFYFKIRIYFRVKYLNKKICIKNQKQRLLGNSKLLKMKL | |
| FBte0001486 . CDS 2159 2733 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgn0044301,NCBI_PROTEIN:CAA43305.1;name=Dbif\P-element\T;translation=MKYCKFCCKVVTAGVSLVHVPKCSVKRKLWEESLGCSLGGNSQICATHFNDSQWKSTENKGQANKRRRLNKDAIPTKEIEPEPENVKEGYTSSSTQTECCSLSKENKSLRQTIRAMEYDLQRLRSQLEESRQLEESLGKIFTETQIKILKNGGKRSTFTSDDISAAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVEIKTGCLDVAIDLMENDAMDEADKLCVVAFDEMKVAAAFEYDSSADVIYEPSNYVQLAIVRGLKKSWKQPIFFDFSTRMDADTLNNIIRKLHTKGYPVVAIVSDLGSGNQRLWSELGVSESKTWFSHPTDEHLKIFVFSDTPHLIKLVRNHYVDSGLTLNGKKLTKTTVQQTLNHCTKSDVSILFKISENHLNVRSLDKQKVKLATQLFSNTTASSIRRCYSLGYDVENACETSDLFKLLNDWFDVFNSKLSTANCIQSTQPYGKQLEFQRDVLEKMTKIMSSEILGKSQKLPFQKGIIVNNASLDGLFLYLKDKYNMEYLLTSRLNQDIVENFFGAMRSRGGQFDHPTPLQFKYRLRKYLIAKNTELLRNTGNVEEDNTDSWLNLDFSSKNSENWENNPEDVEPEDDEQTIANNIPADIEMDELTEDAIEYVAGYVIKRLRTSDCVEQSSTFTYVDEVSHGGLIKPSDQFKNKLKELEKIFLHYTKENFKITKNLKEKLIIAAQNVELDKFVISFYFKIRIYFRVKYLNKKICIKNQKQRLLGNSKLLKMKL | |
| FBte0000136 . mite 1 823 . . . ID=FBte0000136;name=Dsub\SGM;source=AF043638;type=?;subtype=? | |
| FBte0000136 . terminal_inverted_repeat 1 16 . + 1 Ontology_term=SO:0000481 | |
| FBte0000136 . terminal_inverted_repeat 765 780 . + 1 Ontology_term=SO:0000481 | |
| FBte0000962 . terminal_inverted_repeat_element 1 1676 . . . ID=FBte0000962;name=Ddip\Bari1;source=Y13852;type=?;subtype=? | |
| FBte0000962 . terminal_inverted_repeat 1 198 . + 1 Ontology_term=SO:0000481 | |
| FBte0000962 . terminal_inverted_repeat 1423 1676 . + 1 Ontology_term=SO:0000481 | |
| FBte0000962 . CDS 331 1349 . + 1 Ontology_term=SO:0000316 | |
| FBte0000962 . pseudogene 331 1349 . + 1 Ontology_term=SO:0000336 | |
| FBte0000044 . terminal_inverted_repeat_element 1 1743 . . . ID=FBte0000044;name=Dmel\Tc3;source=AC009537;type=DNA;subtype=Tc1-Mariner | |
| FBte0000044 . terminal_inverted_repeat 1 27 . + 1 Ontology_term=SO:0000481 | |
| FBte0000044 . terminal_inverted_repeat 1717 1743 . + 1 Ontology_term=SO:0000481 | |
| FBte0001399 . LTR_retrotransposon 1 7220 . . . ID=FBte0001399;name=Dmel\HMS-Beagle2;source=3R.Release.3;type=LTR;subtype=Gypsy | |
| FBte0001487 . retrotransposon 1 4622 . . . ID=FBte0001487;name=Dpse\INE-1;source=AC131959;type=?;subtype=? | |
| FBte0001487 . CDS 2480 3364 . + 1 Ontology_term=SO:0000316 | |
| FBte0001487 . inverted_repeat 252 693 . + 1 Ontology_term=SO:0000294 | |
| FBte0001487 . inverted_repeat 4189 4622 . + 1 Ontology_term=SO:0000294 | |
| FBte0001487 . dinucleotide_repeat_microsatellite_feature 100 111 . + 1 Ontology_term=SO:0000290;remark=repeat%3DTA | |
| FBte0001487 . tetranucleotide_repeat_microsatellite_feature 150 197 . + 1 Ontology_term=SO:0000641;remark=repeat%3DGTCY | |
| FBte0001487 . region 117 149 . + 1 Ontology_term=SO:0000001;remark=Wilder and Hollocher core sequence | |
| FBte0000124 . non_LTR_retrotransposon 1 759 . . . ID=FBte0000124;name=Dmel\Q-element;source=AE002612;type=LINE;subtype=CR1 | |
| FBte0000332 . terminal_inverted_repeat_element 1 769 . . . ID=FBte0000332;name=Dbuz\BuT1;source=AF162798;type=?;subtype=? | |
| FBte0000339 . terminal_inverted_repeat_element 1 2775 . . . ID=FBte0000339;name=Dbuz\BuT2;source=AF368884;type=?;subtype=? | |
| FBte0000935 . terminal_inverted_repeat_element 1 795 . . . ID=FBte0000935;name=Dbuz\BuT3;source=AF368870;type=?;subtype=? | |
| FBte0000890 . terminal_inverted_repeat_element 1 1447 . . . ID=FBte0000890;name=Dbuz\BuT4;source=AF368868;type=?;subtype=? | |
| FBte0001188 . terminal_inverted_repeat_element 1 669 . . . ID=FBte0001188;name=Dbuz\BuT5;source=AY187768;type=?;subtype=? | |
| FBte0001122 . terminal_inverted_repeat_element 1 387 . . . ID=FBte0001122;name=Dbuz\BuT6;source=AY187768;type=?;subtype=? | |
| FBte0001076 . terminal_inverted_repeat_element 1 1467 . . . ID=FBte0001076;name=Dbuz\INE-1;source=AF368900;type=?;subtype=? | |
| FBte0000793 . terminal_inverted_repeat_element 1 726 . . . ID=FBte0000793;name=Dbuz\ISBu2;source=AF368867;type=?;subtype=? | |
| FBte0000139 . terminal_inverted_repeat_element 1 993 . . . ID=FBte0000139;name=Dbuz\ISBu3;source=AY313771;type=?;subtype=? | |
| FBte0000407 . foldback_element 1 1510 . . . ID=FBte0000407;name=Dbuz\Newton;source=AF368890;type=?;subtype=? | |
| FBte0001080 . foldback_element 1 2304 . . . ID=FBte0001080;name=Dbuz\Galileo;source=AY187769;type=?;subtype=? | |
| FBte0000662 . foldback_element 1 722 . . . ID=FBte0000662;name=Dbuz\Kepler;source=AF368884;type=?;subtype=? | |
| FBte0000737 . non_LTR_retrotransposon 1 5691 . . . ID=FBte0000737;name=Dyak\HeT-A;source=AF043258;type=?;subtype=? | |
| FBte0000737 . five_prime_UTR 1 587 . + 1 Ontology_term=SO:0000204 | |
| FBte0000737 . three_prime_UTR 3276 5691 . + 1 Ontology_term=SO:0000205 | |
| FBte0000737 . CDS 588 3275 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAC01742.1;translation=MAQVILSDDSSNDEVLSLFSSPESQNTPFYLEISPMSQNSNNSQFNISIINMKKSSSNSAINSLKNPSEAAIKIINSLTYKGKENRENKNAQKDPLFLTNTNKETAGAKSSVSNGPVVSLLSVTHTNRGKKLTTAHNTNAAETTNTNMDDKKSGALRNFPFPTHEDNSMERNLSSSTKIGSKSISPHSLSPTHTSKVINISTNSRSKSPALANADTLHKLANIYDNSRDHNQGETQHKFITRNTFFQNLYPKPDISKLSLKNKATILAKTTKNKCISPQLKGASLCSPVQPNLNFKVTTTHSMGNTSASRTLNRPAAKRDLFNSPPNSTNALPMSFSEVVAGTGPGIVASSDPAPITKTPGKRTNTNMDMDSFSYKTPNKKACVPTNFATPNPFPPLATPIFKSKAAKSIVEEIKAPRHPVESEKASARSVPAQTEIAPPPPKNSATELPPWQIVPQSRRAPPIHIKNVREIVPLLEKLNYSAGVDSFTTKTSIGNGVTIQAKDLTAHRIIKDILAKSGIPYYSNQNKSERGFRVVIRHLHPSTPCSWITSELQKLGHQTKFTRNMTNPATGGPMRMHEIEIVSAMDGSHLRILSIKQLGGQKVEIERKNRTRELVQCFRCQGFRHARNTCMKPPRCMKCAGQHWSSECTKPRSTPATCSNCQGNHISAYKGCPAYKAEKQKLAVNRIDFHKIRTIMDAKSNNNERQPRPPFNKTPRLPYSTEMAEARKEAARKSAMNPFRQNVKDSRPNLPYLSSHEIAIQKRLNKWRRSTNKASTNSRTNPKVKAPNMTKNPAQRHLEKFQNGLRKEQKNVEKAMEHKQGKDDSPPTTSRAALANLKPKIVKETTPSPQNINTFPENSQPDDPVIKLANRVDNLEKKIDILMALIIQARNAHE | |
| FBte0000683 . non_LTR_retrotransposon 1 8500 . . . ID=FBte0000683;name=Dvir\TART-element;source=AY219709;type=?;subtype=? | |
| FBte0000683 . five_prime_UTR 1 197 . + 1 Ontology_term=SO:0000204 | |
| FBte0000683 . three_prime_UTR 7957 8500 . + 1 Ontology_term=SO:0000205 | |
| FBte0000683 . CDS 198 3311 . + 1 Ontology_term=SO:0000316 | |
| FBte0000683 . CDS 3362 7957 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAO67563.1,NCBI_PROTEIN:AAO67562.1;translation=MQKPTVSKSPPKSPHNASEITANSAVPPHRATEECSISERAKSELSQLQQQLTKNPQKQLSREHRRQQLLRLCEEEERLMPDVPAQQPTLTLKHKPKLKTVLANSSPPSSAPLRMSLTKSSKAKARKESQSSACREKSPEENTYVNVLESDDESDIAANKNYDQPQQQTTIAQVHNFNTNTSITSTPKAASHCDPSPNVSAHEVELHNVDNTREASYVNNIDELTDVFDDEDDDDDCYRPAAVINSSVADMLNRTTTVEHNSTATANRGEILANVKTSDAFAANKINSITFEKIEPIPQTITPTVAKGPKFNCSMLPTTSLSAKKSLKRKGTLPQQSKQKRAQTLAVQGNSRPGMKIQDFLKSSTRVTKATNKAAIINKYKKSNRNTKKVNPSSSTKLNNSSMDIDLDSSDISANNIGSDDDIVQIQSNAQEVTNHATKVQQQQQHRQQQQHHQQQQQQQQQQPTKSTKIPTIFLPSISDIQQIIDMLNNTVGANKYTTKCTQNDGVRVQCSDLLSYNAAIALLGANTEIQMHTHQMRSERGYRVLLKNVHHSTPCEQIRAELAKHGHTVRFASVIKHRFERRPLNMFEVELAPNGDTNDKVLELKTLGNQHIEVERQLKRDEPVQCHRCQSFGHSKNYCRRPFACLKCGEQHPTTTCTKPRNTPAKCVNCKADHIASFKGCSVYKMEREKLAANRVRAAIDRQQQHQQQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQNRQLQQHQQQQQQQHRQLQQHHQQQQQLQHQHQQPQYLAINTSAPSGIKSTKERKQQQQQLRQQQQKQQQQQQQQHQQLKPNNQLTYSQVASGQANTSLSHNPAMQHLKKYQQQLQLEQQQQQRQQQQQQQQQLQPEQQQQLQRQQRLRQQQLPEQQKRQQYQRQQEQQSHEQQQRHQQQSQQQQHRQQADSPLLEALQQNVISINEMSKKIDMLISLLLTMAASNTNINKQGEQQTIPLTTSTSDTLNNVNKKNNFPNLMSTLISTAQPINNSQSANANCEHIATDSSQYV,RRGVELLRSIHSNKKLNILATGGATHFPYTSRNRPSAIDIAVYRALTMTGLQTHSTIDLESDHLPIHIGLRVGRFPYKQTTMRLLPINANVKKFQNHLDKNVRLNTEIISGPDIEDAIDILNKNIYNASLAATHPPRRHQQQQRQGTNTNRMNHGRFKLTNETIRLLAIKRQRKREHMVMRTPLTRSRLSQAQNKLKKALRMDKKKQTNKMFEQIDATDRYKIQKLWRITNNIKRQPEPNWPLKIQATDNNNSRSNRTQWTKTSKEKAEVFAAYLEQRFSPIFSNTAEYRLQVNNEINTRQQTNDCDSGAGVAGVIPFRPITYTEVTKEIGCLTIKKAAGIDNIDNRVIKALPKKAILYLVMIYNCILRHGHFPRQWKCAAIKTILKPGKPTEDVASYRPISLLAGFSKIFERLLMYRLYECSEFAKAVPLHQFGFRKDHGTEQQLARVTQFILSAFEKKQYCSAVYIDIREAFDRVWHEGLLLNLARYCLIGCIMVLKSYLLDRTFIVHGNEGIKSRIGKVSAGVPQGSVLGPILYIIYTSDMPLPHIATPPNPTTTAATITNTETSITNPYNCSMLLSTFADDTVIMSSADILQTSYSANQTYLRQFTIWCNRWCIQINDSKSAHVVHTLRNLNSRMNYLTPRLNGQEIPSKPRQKYLGVHLDRKLHMQHHVTQLRCRLKALYNKLEWLIGNKSVLSVECKITIYKQMIAPIWRYALPIWGAMISDTQLRRIESTQNWILRKIVKASWWTRNKDIRDTYDIGTVDEIFHTTSKRFADSLAIHPNANARKLIASPYVPIRLDRQRYSLQLQQHVRPLQQLVQQSQEQQQLPTLLRMELEEEEANSLRMQQQQQQQTPQQQPARFSEMRINSLRRHYREGRITLEELKLAIREQPLVIQQLVLPRELAIQIYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQEQQQQQQQQQHQYQQQHQQQQQQQIQQQQQQLEGLQHQPNQSPDVEIVLDTPQQQQEQQLERPLPQPQQANLQQQRLTEDEQQLEHRLERLRQQLEREMDEAANNEPTQQQRTPEQQQSNQQQHTIALTENKNTNINPSNSVCANITNFSISQSIIIAPYSLINIATDAPWQQNQPTTTQQLRQQHSNLHQQHLQQQREVVEAPSSNNAQSTVRGAKRRRSSSTSCIEPKRRSPAAPDNQQQRQLHTLLGKRHSGGPAQHNCWPPKRQKLVQQQQQRQACLRRTRLGTWQLQMPHRLGIWLLLSCFGMQTHHKVPQKLVWAPPADYGQSSTNGRHLQIARRRPWHSWQRLQRRWSNCGRQTHRKARPYNILIHET | |
| FBte0000538 . non_LTR_retrotransposon 1 6610 . . . ID=FBte0000538;name=Dvir\HeT-A;source=AY369259;type=?;subtype=? | |
| FBte0000538 . five_prime_UTR 1 1274 . + 1 Ontology_term=SO:0000204 | |
| FBte0000538 . three_prime_UTR 3999 6342 . + 1 Ontology_term=SO:0000205 | |
| FBte0000538 . CDS 1274 3998 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAQ75089.1;translation=MSDPNTTPTTHLSAEPTISPGLLSNLSGLLLSPILTMPASMNGLLSISVDSLAPATALSPQALISTASETPAQKGQEQKRAAGKETENTVSETTTTSSITAKTTATNTNIESIHIPADAQAQLAHFKRLIAQLELDTTPPNSQAADNFTSYYDEHSSSDSIVNIMDSDDAPCTPKPAQPLPMSTFRHHTPTSVVATKTSTQVISPTYAAILAGNAANQKPKNSTCISSSSDSSSNNAPGIGGPGGKITTTATTGASHYKLLHPTGKTANQIRKNNARKSNRQNSAISRLSQQDAQRRNQFANRFTLLSESDFEAPDTHQSQQLPAKTNNLAVPLQAALSPVKQSTTTTTTPTNTRAALTSIHFATAATAVNATPSNSPDCQQQQQAGAINVSAPAAKHYKPPQICIQHYNQPDQNGIDSVIAKLNGQNPPIIDYGLKLGGPGILRILPKTLETYSKIINVLNTDNSINYNTYQRREERSFRVVVRGIHASTSTDAIRNELTCMGYTIRNVYCPKYKNRSGPGTYQPNIFFVELAPDSTKNRSIFEIRNLCKYVVRFEWPKIDGKNLPQCHRCQRFNHTARYCRHPARCVKCGNEHLTQTCVKPANVPATCANCGSDHTANYKGCPLYLDLLQAKLLSLPNSKNISPNVRQPQPKLQRRQKQPQRQQSAQLQLQQQQQQQKQQQVQLQRQLPKPKLINNKNNKKSKQNGGQIGTQPIQNQKLQTSTPAGVPRKSTTPITNNNINTANNANNSNPPTVSSSNSLDPRSRWARIQSLQQQQQQQRQLERPDSVQTREQIISRQRQMLENWSIRQQATSANQPVTQQQSTPMQVDVEQRQLLPSPQQQQLYQTPSSNDLRNDILLQMANKQQEQLDGLMGSVLILQQQLQGVLRLGADSTPLAVPWSNSSQ | |
| FBte0000886 . non_LTR_retrotransposon 1 8444 . . . ID=FBte0000886;name=Dyak\TART-element;source=AF468026;type=?;subtype=? | |
| FBte0001482 . non_LTR_retrotransposon 1 1757 . . . ID=FBte0001482;name=Dnet\R1A-element;source=AF248067;type=?;subtype=? | |
| FBte0001482 . CDS 1 1134 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAF75688.1;translation=VVGSSRLELETKGAQLMSIVGAWGAEAGVAVSTSKTAVMLLKGILSRNRRPMVRFAGANLPYVDNYRYLGITVSERLNYQRHIASLRERLTGVVGALGRVLRVDWGVSPRDKRTIYAGLMMPCALFGASVWYRTTDRGVTAKKRLIRCQRLILLGCLPVCRTVSTVALQVLAGAPPFDLAAKKLAIKYKLKRDYPLEEGDWLYGQDLADLTSEQKMARLDECMLSEWQLRWDGDVHGRVTYAFSERKFVYLRRDFRFTLRAGFFLTGHGSLNEFLHGRALSETPTCTCGAVSEDSLHVLCECPLYADLRDLDGLGVRNLHGVWDVSGVKETRERMQLLDAFADAVFTRRRNAQHVQDGQDGLDGPDGQVRRGLPVPS | |
| FBte0001482 . three_prime_UTR 1135 1757 . + 1 Ontology_term=SO:0000205 | |
| FBte0001071 . non_LTR_retrotransposon 1 1753 . . . ID=FBte0001071;name=Dtak\R1-element;source=U23198;type=?;subtype=? | |
| FBte0001071 . CDS 1 1134 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAA91003.1;translation=ARSISGPFIWNLLMDVLLQRLEPHCAVSAYADDLFLFVDGNSRADLERKGEQLMGIVGAWGSEVGVSVSTSKTAIMLLKGSLSQQRRPTVRFAGTSLPYVIKCRYLGILVGERLSFLPHISALRDRLSGVVAGLARVLRVDWGLSSRAKRTIYRGLMMPCALFGASVWYKAVRRGKSLKLLTSCQRTILSGCLPVCRTVSTVALQVLAGAPPMDLDAHRSALKFKLRKEIPLDTNDWLHGLDMTGMNWKDKMALLDERLLNEWQLRWDNAITGHVTREFFPEAAFVYKRKDFVFTLKAGFLLTGHGSLNAFLHGRTLSTTTACSCGEEDESWLHVLYECRLYNELRDLDALGIVQDQGRWIVAGVVETPERMRLLGVFADAAFSRRRTDAADG | |
| FBte0001071 . three_prime_UTR 1184 1753 . + 1 Ontology_term=SO:0000205 | |
| FBte0001036 . non_LTR_retrotransposon 1 3772 . . . ID=FBte0001036;name=Dmer\R1-element;source=AF015277;type=?;subtype=? | |
| FBte0001036 . five_prime_UTR 1 468 . + 1 Ontology_term=SO:0000204 | |
| FBte0001036 . CDS 469 1786 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAB94026.1;translation=TEEAQPRSCSARAAMKDALIMPPPDSPPRKIVACYEVSEDSDTSLAATITGKGSRSRLLLLPLRLYPLLHLLLSLLLPLLLLLLPMRGHRHPPPTAATVAAVPDAKVSSNSVVERMQHIERKLRKAILVEDVPNAVALSVLDLAAKYQELVLDMYGAMKELETERRIRPQPVVTLAATTAAPAAPVAAPRIRKVAETWSAIVTSNNPEETPKQVAERVRKEVAPALGVRVHEVRELKRGGAIIRTPSSGEMRRVVANPKFKEVGLDVKQNAASKPKVMVRDVDSSITAKQFMNGMWNNHFSGRMSNVVFEKSVKITSKPWTAESGPTVNIQLEVDQKALDILEDHERIYVEWFSFRWHTVTPTYACYKCVSFDHRVAQCRMNEEICRQCGQAGHRASKCSNPVSCRNCSFKGMPSTHRMLSAACPIYGAVLARVASRH | |
| FBte0001036 . CDS 1779 3772 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAB94027.1;translation=TLIMFRVIQANCGRSRAAVIDLGVRMRDSGVTSALLQEPYVDRGGRITGLPAGMRVFSDSRNKAAVIVHQEVVCMPVSSLITEHGVYVSASGNFGSIFLTSVYCQFNAELEPYLLYMDAVLLLASRTPVIYGLDANAVSPLWFSKLPERSRGYLNRQRGELLADWIQGSRAGVLNVHSNVYTFDNRRARSDIDVTIVSDSATTWAAYEWSVSEWDLSDHNIITIVVTLDPASTVESYAPVPSWKLHSADWRRFGDELRTASMDFPLEQFRAMTSDEQVTALRSLVHQVSDAVFGRQQLRAKRRVSWWTAALTDARRELRRARRRLQHARRTHSDSATVLASYFRIARKEYERMMLHEKRNWKRYVGEHQRHPWGSVYRICRGRKKCTDLGCLRWNNELVVTWAACANVLLHSFFPAAERPVDVPVPPEVPPVLDPIEVDTCIAKVRSRRSPGLDGITGDMVKAVCTAIPEHMTTLYTRCLADGYFPTEWKRPRVIALLKGPDKDRSDPASYRGICLLPVFGKVLEGIMVNRIKEVLTDESRWQFGFRPGRCVEDAWSHVVSSVEASAAKYVLGVFIDFRGAFDHVEWDAALRRLSDLGCREVGIWRSFFSDRKASIVSSFGEVNVDVTRGCTQGSISGPFIWNILMDVLLHRLETHCTISAYAD | |
| FBte0001483 . non_LTR_retrotransposon 1 2038 . . . ID=FBte0001483;name=Dnet\R1B-element;source=AF248068;type=?;subtype=? | |
| FBte0001483 . three_prime_UTR 1078 2038 . + 1 Ontology_term=SO:0000205 | |
| FBte0001483 . CDS 1 1077 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAF75689.1;translation=VEGQSRAEIEALAGAHLRTVCDWGNSVGVSLAMDKTTTMLLKGRLSASRHPSIGLNGAFLRYVTEVKYLGITFGERMCFTPHFTGLKRRLLGVVGQVRRILRNEWGLSRRAVRTIYNGLFVACATYGSSVWCDAVTTVVGRKKVLACQRVTMMGCMPVCRTVSTEAMQVLLGVPPLDLEVRRRAVLFKVKRRIPLLQGEWLADRNVESLGLSVCKKLLDECVMSDWQVRWDTCLNGRDTYRYIRDVTFVGSRPDFGFNLSLGFLLTGHGSLNAFLHQRRLSDTQECHCGLSEETWEHVLCECPSYEDLRSLSAFGVRQVRGGFDVSQALSTSDRVRLLNEFARAAFARRRVLTHQGIV | |
| FBte0001481 . terminal_inverted_repeat_element 1 1730 . . . ID=FBte0001481;name=Dsub\GEM-element;source=AJ131629;type=?;subtype=? | |
| FBte0001481 . terminal_inverted_repeat 1 128 . + 1 Ontology_term=SO:0000481 | |
| FBte0001481 . terminal_inverted_repeat 982 1137 . + 1 Ontology_term=SO:0000481 | |
| FBte0000291 . non_LTR_retrotransposon 1 6564 . . . ID=FBte0000291;name=Dvir\U;source=AY369259;type=?;subtype=? | |
| FBte0000291 . five_prime_UTR 1 1230 . + 1 Ontology_term=SO:0000204 | |
| FBte0000291 . three_prime_UTR 3907 6564 . + 1 Ontology_term=SO:0000205 | |
| FBte0000291 . start_codon 1231 1233 . + 1 Ontology_term=SO:0000318 | |
| FBte0000291 . CDS 1231 3906 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAQ75088.1;translation=MIGLRIGIWHANGLSNKTDELEQFIIRHNVDLMLISETRFNFNSRVQIPGYSIITANSPQTHLCIGGAAILISNHIEYQALPGISLPQLQCAIVRLRTDLGGANIASCYWPPNHAVLADDYVCLFNQLGENFLIGGDWNAKHRLWGNMRRCPRGSILANILMDSNKYNVLTTAEPTHFPSNSNRPSVLDFGIYAGISSHRLAISRVTELHSDHLPLLVQLKITINGQSLWNNPNLIHRSRPRRRNRHRLLTERSNLEIFHQKLESSINLNIEIDCINDIDDMLENFMSKLHIAAEASNSRSAMASIIPPHQNSSNNTLNNENNNNVNLDLSSPQPLPLSAFIRTDEHRELMRLKRRLRKRWARTRQLDHWLEWQRVGRQLANQLEQQRRDYVDYVLSNADPQKKGAFNLWHATKYLKRQPHAQPSVRNLNGHWCQSAEEQAEAFADELQARFTPFNLAPSGQCERVKRTLNQQVNLYDNTLNAINPQYPILSSHIRHVTLCELNTYIGHLQMRKAPGLDQIDNYLIRSLPQKARLFLLLLFNGMLRLRYFPSAWKCAAVRMILKSGNRSAANLNSYRPISLLSTISKLFEKVIYERLNDELQSPLESESELECSRVIPNHQFGFRSGHGTIQQVHRIVEHINNSFERGHCTSGAFLDLQQAFDRVWHDGLLFKLRTHTSEPLYQLLKSFLSNRSFCVLSTNPTTNGNRGADACHSTLRPMVAGVPQGSVLAPLLFNIFVSDMPCIATHIQQVFQPPPGQTNTSIIGLTATYADDTAFLCSAMNAVVATTILQGHMHRFVKWANNWNIQINDNKSVHIIFTLRRQIANAGSLTTQLTINNNIIPAKSYVKYLGLNLDKKLNWARHARLQHKLCAKNCSNTNGYYLPANPDYH | |
| FBte0000242 . non_LTR_retrotransposon 1 5386 . . . ID=FBte0000242;name=Dtei\I-element;source=M28878;type=?;subtype=? | |
| FBte0000242 . CDS 190 1479 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAA74494.1;translation=MTDPPDIHNFTAKSYQSQLGNPKFIVIKRKDNNSLERISPFIIKKSVDFACGGEVEVCKRTRDGSLLIKTKNELQAIKLLKLTTMADVEVTATEHKTLNFSKGVIYCNDLRYIDEDTILQELKPQKVTEVKKIMKRQNPNSNSDTNNTTLIETGLIIITFESHKLPEILRIGYETVRVRDYIPLPLRCKKCLRFGHPAPICKSLETCTNCSEIKHTNDGETCTNEKNCLNCRNNPEINHQHSPLDRKCPTFIKNQELTAIKTTQKVDHKTAQRIYFERHGFQLRDSYAKTLTNGTTQIKTNTQAPNIDANTHTIQSQNQNSYITPTSTPHTTSSKTTTTGPAKTTPLSNQPQQRHHHHCYDEPEDMDTYHPTDHPTFTPYSSQHTEDLKIKIYSKDKSNNLSTNLKASKIKAKALNKKKHTNNSDSESI | |
| FBte0000242 . CDS 1559 5263 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAA74495.1;translation=MSLTVIQWNLKGYVNNYSQLLILIKKYSPHIISLQETHIQHTNTIPTPINYKLLTNIATNRFGGVRILVHKSIQYTTLNITSDPEAIAINIQSKIKLNIFSTYISPTKNISDQTLQNTFNIQQTPSLITGDFNGWHPSWGSPTTNTRGKITQRFIDNTHLILLNDKSPTHFSTHNTYSHIDLTLCSPILAPHANWKILNDLHGSDHFPIITTLFPTTNTQKFNRPFFKLKEANWDQYSAHTQQINEKYPTSQNVNKEAAQINRIILYSANLSIPQTSPNAHPTGFHGGTSTSTNCESKNNLRWKKLNRTITLENIIDYRRKNAKFRYELKKRKKEASSSFTSTIHPTTPSSKIWTNIRRFCGLNPIKQIHAISSPENNETTLASNEIANIFAQHLSELSGDWNFSEEFRNNKYRNNLHNYTPSPIAQTIEKNITYLELISALQTLKGSAPGLNRISYQMIKNSSPTTKHRITKLFNEIFNSHIPQAYKTSLIIPILKPNTDKTKTTSYRPISLNCCIAKKLDKIIAKRLWWLVTHSNLLSENQFGFKKGKSTSDCLLYVDYLITKSKMHTSLVTLDFSRAFDRVGVHSIIHQLQEWKTGPKIINYIQNFMINRKIIVRVGPHTSSPLPLSNGIPLGSPISVILFLIAFNKLSNIISLYKEIKFNAYADDFFLIINFKKNTNISLDNLLNDIGNWGSYSGASLSLSKCQHLHICKKHHCTSKISCNNIQIPTVTSLKILGITINNKYKWNTHIYSLLPKLYNKLNIIKCLSSPKFNCNTLSLLNVAKATVIAKLEYGLFLYGHAPKSILNKLKTPFNSAIRLALGAYRSTPINNLLYESNIPSLEMKRDLQIAKLSQNLSFCKNRPIHKFVRHKKYKKKTLSIIDQTIKLSLELNLPYKPIKLHKYKPSWDLPNLIDTSLRGHKKQETSPESYRKLFEHTKNKLKPHSFIFTDGSKINCIITFAITTDTNILKQGILPPYSSVLTSETIAILEAIELIKTRRGKFGIWFDSLSAIDSIKNPNNNSFYPNRIRSLITQLAPKIKIMWIPGHSGIIGNELADQAAKLASNMPLIVTPNINNTDIKRHLKAELATKQKENIINCNQWYQSLNTNNTHTCDYLKQTHQNWTRLDQIKIIRLRLGHTNITHQHYLNPNPITVCPFCQGDLSISHILNSCPSLIQTKQAIFRTLPLDLLSKPNPENIQKILVFLKKTRIIPPNFKKKKQMYNNKHSNHLTN | |
| FBte0000587 . LTR_retrotransposon 1 1543 . . . ID=FBte0000587;name=Dmel\Osvaldo;source=AY089271;type=LTR;subtype=Gypsy | |
| FBte0000587 . CDS 172 1527 . + 1 Ontology_term=SO:0000316;db_xref=NCBI_PROTEIN:AAL90009.1;translation=MGVGAATVRFRNLVQKGPAEHRCRRTFKTTSAGDEPKNELEVHEQPREQQGCRCFEEMRRKVKQPPQKFPDYLEEDGKLYRHIAHRACNEEVASWKMCIPIGQRQRVMTENHDMPTAARYYWPGMHRGVRKYVRNCECCMMYKPSQLQAAGKMLTQVPEEPWATVCADFVGPLPRSKHGNSMLLVLVDRFSKWTEIVPMRRATTETMRKAVRERIVARYGVPKVMITDNNVQLTIRAFRKFLEELGVRHQLTAPYTPQENPTERANRTVKTMIAQFTGADQRTWDEHWPELQLAVNTSVAETTGYSPAFITQGREPRLPNALFDEKTTGTGKCTQTPVENAEKLKEIFELVRRNMEKAVQDQARHYNLRRRPWKPKVRDTVWAKEHHLSKAAEGFAAKLAPRFDGPYMIKKFTSPVICVLEHKTSKKEKTAHISDLKPGSAGAGGPGDFEE | |
| FBte0000148 . non_LTR_retrotransposon 1 10463 . . . ID=FBte0000148;name=Dmel\TAHRE;source=AJ542581;type=LINE;subtype=Jockey | |
| FBte0000148 . five_prime_UTR 1 452 . + 1 Ontology_term=SO:0000425 | |
| FBte0000148 . three_prime_UTR 6698 10463 . + 1 Ontology_term=SO:0000426 | |
| FBte0000148 . CDS 453 3350 . + 1 Ontology_term=SO:0000316;db_xref=TAHRE:FBgn0069342,SPTREMBL:Q6KF09,NCBI_PROTEIN:CAD65868.3;name=Dmel\TAHRE\gag;translation=MSTSDHLFSDDEVHSISSSPEQRNSPFHLEISPMSHESDNSQSNISIINLRKLPLKPTNNISKCSSGTAINIFHSLSHKEKENMNTNIAQKDPLSIDNTAADTDGAKSSILKGKLPSPPLSSHTYKGKLPPATTHTNISALTHTDASQREKIPTSVICTNAAAATNTNADLGAKTSDALGNFPSLSHSDHSMENNLSSSTKIGPNTNSPSSHILTNTSQATNISAESRSKFPAPTNTDARLKKAITSDKGEIHTQIQTNKSKEHNQENKPFNYLSCYASWSTSNPKPDISKLSLTRKSTNRTGNSGKRSISPHQKNASLCPSAQGNLNSNLNSNSNPKSSATPTEVNLSAARTLSRPAAKRDLFNSSSRSPEEQPMSFSEVVAGTGPDIIAPSAPAPLTKTPGKRTNSDLDCSSFKTPNKRLRATPNFETPSLFPPLITPVFKSKAAQSVYEESKARNGPPRQPLPCSNNASARSATAPPGIAPLPPQNTDVELPPWKIVPQSRRAPPILVNNVREIVPLLEKLNYTAGVSSYSTRATEGNGVRIQAKDMTAYNKIKEVLTANGFPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLKLGFQARFARNMTNPATGGPMRMFEVEIVMAKDSSHGKIISLKQLGGQRVDIERKNRTREPVQCYRCQGFRHSKNSCMRPPRCMKCAGGHLSSCCTKPRTTPATCVNCSGEHISAYKGCPAYKTEKRKLAVNNIDINKIRTIKDANITNYGRQGPPSRNNFPRLPFSSSTSNRTTAESRQDTARARRNNPFRQNRNEARPIQPRFSSHDFAIQKRLNKWRRNSDNVSKKGTINPKDKPKPRTPNMTSNPAQKHLEMFQEKLRKARCERKEQDPEEKKTNIRMGDDESPPTTSRAARAFLKPRIIDDNIPTPMDTYSNPQKSPSDFDSKSLTQRVENIEKKIDNLMELLFKCLESTKESTLAHLMTS | |
| FBte0000148 . CDS 3386 6687 . + 1 Ontology_term=SO:0000316;db_xref=TAHRE:FBgn0069341,SPTREMBL:Q6KF08,NCBI_PROTEIN:CAD65869.1;name=Dmel\TAHRE\pol;translation=MTFNLNNGQASNTLKIGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHTYLAQNPTSHRKGGTATIVSQNIRHACLNPIETDFMQSAPIALIPSSRIRADMTIVAPIYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSSDHLPIQIVLDPDDSDWQHNKTNNAIIQKRTDLTKFKKNLENKILLNTEIRTGQDIDDCIDILINNIKSAANEATPPNRPQNNRTYNSSRRSTNLRLDEATKRLLEEKKELNRIFRAVGTDEARRWFKNVQNRLSKEIRKLKQKLLNRNLQDIDTTDRYRTQKLWKTTNTIKMQPRPCWPIKKDNDDSRQRTDYPWTRTLDEKAEAFASHLESRFRTNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELSKNRYVKQLSKYILPLQQHRPKPPAEPIYSSIHNYTKKEEAEIVAKMRTKFRQTLPTLLRIADQELEIRQSIAEEKRKEKEKSERRKALEKGPPDRWCELQINKYSKLYRKGLRAREEILELMLGQPATVIKIVIPDYEPEDDLTKKS | |
| FBte0001316 . LTR_retrotransposon 1 4533 . . . ID=FBte0001316;name=Dmel\Xanthias;source=FJ238509;type=LTR;subtype=Copia | |
| FBte0001316 . five_prime_LTR 1 206 . + 1 Ontology_term=SO:0000425 | |
| FBte0001316 . three_prime_LTR 4328 4533 . + 1 Ontology_term=SO:0000426 | |
| FBte0001316 . CDS 331 4290 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,UniProtKB:B6V6Z8,NCBI_PROTEIN:ACI62137.1;name=Dmel\Xanthias\pol;translation=MSVSIQIEKLGDDNYDVWSILMRSVLITADLWKVVCGQYVKPEDGSEDSERWNMLDQKALASLFLNLKETQLMHIKACTTSADAWKKLCDVHLPGGPIRKVQLYQKLSRLRMLEGDNVVQYVNKFAETVNKLAEMDITINDELKSIMLLSSLPNSWENFVVAIETRDTLPTFETVKVKLLEEGARKQERDDREGSVQAVYVHTKLHGTAKQKQREENNLEKHSFKGKCYICEKFGHRARECPNKGRHKKLGESKEKSNCLMHISATTQRKNIWCVDSGATSHMCCDKGLFTSFINKETSIMLAADKFVKSSGIGTVMLKSQNVNIELRDVIYVPSLHMNFLSVSKSAEYENITTFDKKAAVIKNKQGEVMMRAMQEDNLYLFTSSSKNGAVHLLNDSSRMATWHNRFGHLNFQCLKEIKEKELVIGMDFKNMSVNINCDTCNMAKIHVLPFPQNSERATQSVLELVHSDVCGPMNVSSLGGNKYFVTFIDDYSRKIFIYFMHAKNEVFDKFKLFKSYVECQTGKKIKALRSDNGTEYVNRQFTEYLNTCGIKRQLTVPYTPQQNGVAERANRTIVEMAKSMLIHAKLEEFLWAEAVSTASYLRNRCPSKALMGATPFEIWQNRKPSVKHLRVFGSRAFALDKTRKSKFQAKGKEYIFVGYSSTAKAYRLYDREKRIIVARRDVKFVEGEFESKKCTISEQNNDFATNIIHLESNIQVPEQQRPAMPMVVEQSSNSYDSCDSGEEEEEFVSASDEKQILTEEEIVPDVQEQESNAPRRGPGRPKIIRSGKSGRPRKQYNSLNYIEDIETPQCVGDALRGEHAQDWKTSMQKEYDALVSNNTWTLCDLPPGQKAIGSKWVFRVKRDKEGNIQKFKSRLVAQGCGQKMGVNYSETFSPVIRYETIRMLFAIAAEKQLCMHQVDISNAYLNGRLQEEVYMRQPQNFIDEKHPNKVLKLQKAIYGLKQSGRVWNDTLDEVLKSIGFKRSKNEACLYAKQQQQQHSYIAVYVDDLIIISYDENEISAIKRKIANKFDIHDGGQLNYFLGMEIQRESTRGSISLCQKQFIINLLDKYGMQNCRPAATPLDPGYKMGCRNENCVKVNITQFQSLIGSLMYLAVLSRPDILHTVSKLSQRNTDPHSEDETAAKHVLRYLSATVDLKITYSKSGEQVMGFADADWANDLSDRKSYSGYAFFLGGSAFSWTSAKQSVVAMSSTEAEYVALSTAAKEAVYLRRLLLEIGWSLDGPITICGDNISSHHIAKNPVHHKRTKHIDIKYHFVREKVECNEIILEYVPTDKNVADVLTKGLCKQKQQNFTKLLGLN | |
| FBte000XXXX . five_prime_LTR 1 493 . + 1 Ontology_term=SO:0000425 | |
| FBte000XXXX . CDS 1147 2511 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,GI:XXXXXXXX,NCBI_PROTEIN:XXXXXXXX.X;name=Dmel\gypsy1\gag;translation=MSESFRQYRNSKKCASDSESESDDSTENSVRKNTPTNAFTAYKMSLETEQIKALIRALQEQALESQRREADLRKTIQDLAGQVAAIQIAPARAEAPPIKVYRPVEITGLVPCGETLDAVKCLPDFMGTQETYVSWRQAANAAYHMFRKYEDSSRHYQAVVIIRSKVKGPADAVLSSFGTILNFDAIISRLDFTYSDKRPIHVIEQELGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSYEASAATVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMPSALALAQEVESNHERYTFATSFARSQEDRDHKQYPKVQERQRAPPQAGSQGSAGKNPHFTKQHRAQVHSAPRSDRMARENTPEPMDVDPSLSRMQPSHAPAYPKSKPAASGRSVPPKRQRVNHVAQASDDLDKVYNTAASSAAVKVDDDSILEYDSDTINFLGESPCYPSSDEE | |
| FBte000XXXX . CDS 2523 5564 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,GI:XXXXXXXX,NCBI_PROTEIN:XXXXXXXX.X;name=Dmel\gypsy1\pol;translation=MKLLIDTGAAKNFIRPFKGLKGVRPVQSPFTIHSIHGVTTITKKCFVSIFNLKATFFLLPDLTSFDAIVGLDLLKQAGASLCLASGKLKWGSGAEQIDFHTCPDVNFTKVDCSDAPPLIKGAFLKMLGNRKKAFADPNEALPYNTSVVATIRTVDEEPIYAKLYPYPMGAADFVNGEIQELLKNGIIQKSKSPYNNPIWVVDKKGTDDAGNKKMRLVLDFRKLNERTVPDRYPMPNISMILGNLGKAKYFTTLDLKSGYHQITLAERDREKTAFAVNGGKYEFRRLPFGLRNAASIFQRTIDDILREQIGKFCYVYVDDVIIFSEDENDHVKHVDWVLKSLYDANMRISAEKSRFFKKSVSFLGFIVTNNGAATDPEKVKAIKEFPEPKNVFEVRSFLGLASYYRCFIKDFASIARPISDILKGENGSVSRHRSRSIQVEFSEAQQRAFEKLRNILASEDVILRYPDYKKAFDLTTDASAYGIGAVLSQEGRPITMISRTLSDREVNYATNERELLAIVWALAKLRHYLYAVKEINIFTDHQPLTFAVSESNPNAKIKRWKARIDESGARIFYKPGKNNLVADALSRQQLNVVEEQEPESCAATIHSELSLTHTIESTDKPVNCFQNQIILEEARSHWKRTFILFGNKRRHSINFSCKQALLEELANIIIPNGVNAFHCDLHTLALIQDDVVRQFPATKFWHCKNRVTDIFAMQERKEILTVEHNRAHRSAQENVKQVLSEYYFPKMTKLASEIAANCKTCAKAKYDRHPKKQELGETPVPTHVGEILHIDIFSTDKKYFLTCVDKFSKFAMVQPILSRTIEDLKAPLLQLMNVFPKAKTIYCDNEPSLKSQTIVAMLENHFGVSISNAPPLHSVSNGQVERFHSTLIELARCLKIDKGISDTVELVLLATARYNMSIHSVINKKPAEVMRADPDDPHTDVQEKIKNAQILTRKRENASRQNRVFQVGDKVLVKSNRRLGNKLTPLCEEKTIEADLGTTVLIKGRVVHKDNLK | |
| FBte000XXXX . CDS 5958 7235 . + 1 Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX,GI:XXXXXXXX,NCBI_PROTEIN:XXXXXXXX.X;name=Dmel\gypsy1\env;translation=MLDMFPQSHMKKLLSVDIAHLRDMLDSLSIHHRVARSLDFLGTALKVVAGTPDAEDFEKVKFTEARLVDAHNSQIEINTKTQVRINELTDTINKLLKISKSAQIDTGHLYETLSTRNRIIVMELQNLMLTITLAKINVVSPNFLDHADLESIWGEEPTNTPIREILSVASVKVLQSLNILHFIIKFPKIIMACNKVTILPVVHHDTVLRLKDNVVAECNREIRTVKNCSITPGATFCQLSSVSSCAQELHAGVVAHCDAQQSDLHPITYVDEGIIVINDRPALVRVDNGTAIHIRGTHLITFIESAMVNETVFFNHDLVQNRAPGVANSPVLNISMKHEVLSLPYLHRLSEKNLEQIRNFEKDVDGYRLSQIALVAGAIFCALICIGLTWQRTTRAKKSTAQLKEVLAQIGSAEGGLNLEEGIVN | |
| FBte000XXXX . three_prime_LTR 7226 7718 . + 1 Ontology_term=SO:0000426 |